Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 52 of 130
Found at i:11419277 original size:12 final size:13
Alignment explanation
Indices: 11419251--11419279 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
11419241 TTTCATGGTC
11419251 AAATTTGGATTGA
1 AAATTTGGATTGA
11419264 AAATTTGG-TTGA
1 AAATTTGGATTGA
11419276 AAAT
1 AAAT
11419280 GGCATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (13 bp):
AAATTTGGATTGA
Found at i:11420296 original size:58 final size:57
Alignment explanation
Indices: 11420233--11420447 Score: 263
Period size: 60 Copynumber: 3.7 Consensus size: 57
11420223 TTGTGTAGAA
* *
11420233 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTT-ATTTTTAAGG
* * *
11420291 AAAATTGATACTTTCAACTTTT-CCTCAAAAACCTTTTTTTTTGAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA--TATTTTTTGGAAA-TTTATTTTTAAGG
* ** **
11420351 AAAATTGATACTTTCAACTTTTCCCCAAAAGCATTTTTTAAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGG
*
11420408 AAAATTTATACTTTCAACTTTTTCCC-AAAAATATTTTTTG
1 AAAATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTG
11420448 ATTTTTATTT
Statistics
Matches: 135, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
57 43 0.32
58 43 0.32
60 44 0.33
61 5 0.04
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGG
Found at i:11420419 original size:57 final size:57
Alignment explanation
Indices: 11420233--11420448 Score: 270
Period size: 57 Copynumber: 3.7 Consensus size: 57
11420223 TTGTGTAGAA
* * * * *
11420233 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTGAAAATTT-ATTTTTAAGG
* * * *
11420291 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTGAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-C--ATTTTTTGAAAATTTATTTTTAAGG
* *
11420351 AAAATTGATACTTTCAACTTTTCCCCAAAAGCATTTTTTAAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTGAAAATTTATTTTTAAGG
* * *
11420408 AAAATTTATACTTTCAACTTTTTCCCAAAAATATTTTTTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTGA
11420449 TTTTTATTTA
Statistics
Matches: 136, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
57 57 0.42
58 29 0.21
59 1 0.01
60 37 0.27
61 12 0.09
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTGAAAATTTATTTTTAAGG
Found at i:11420512 original size:10 final size:10
Alignment explanation
Indices: 11420484--11420533 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
11420474 AATAAGAGTG
*
11420484 AAAATAAATA
1 AAAATAAAAA
*
11420494 AAGAT-AAAA
1 AAAATAAAAA
11420503 AAAATAAAAA
1 AAAATAAAAA
*
11420513 AAAGTAAAACA
1 AAAATAAAA-A
11420524 AAAATAAAAA
1 AAAATAAAAA
11420534 TAAGATAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 7 0.21
10 17 0.52
11 9 0.27
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:11420528 original size:21 final size:22
Alignment explanation
Indices: 11420484--11420542 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
11420474 AATAAGAGTG
*
11420484 AAAAT-AAATAAAGAT-AAA-A
1 AAAATAAAAAAAAGATAAAACA
11420503 AAAATAAAAAAAAG-TAAAACA
1 AAAATAAAAAAAAGATAAAACA
*
11420524 AAAATAAAAATAAGATAAA
1 AAAATAAAAAAAAGATAAA
11420543 GATAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 6 0.18
20 10 0.29
21 14 0.41
22 4 0.12
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (22 bp):
AAAATAAAAAAAAGATAAAACA
Found at i:11420580 original size:4 final size:4
Alignment explanation
Indices: 11420573--11420612 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
11420563 AATCTAATCT
* *
11420573 AATA AATA AATA AATA AATAA AACA AATA AATA AAAA AAT
1 AATA AATA AATA AATA AAT-A AATA AATA AATA AATA AAT
11420613 TCAAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 28 0.90
5 3 0.10
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:11420602 original size:17 final size:16
Alignment explanation
Indices: 11420580--11420628 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
11420570 TCTAATAAAT
11420580 AAATAAATAAATAAAAC
1 AAATAAATAAA-AAAAC
11420597 AAATAAATAAAAAAATTC
1 AAATAAATAAAAAAA--C
11420615 AAA-AAA-AAAAAAAC
1 AAATAAATAAAAAAAC
11420629 CTGAAGCGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.03
16 11 0.37
17 14 0.47
18 4 0.13
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (16 bp):
AAATAAATAAAAAAAC
Found at i:11421594 original size:16 final size:15
Alignment explanation
Indices: 11421548--11421713 Score: 66
Period size: 16 Copynumber: 11.2 Consensus size: 15
11421538 AAATATTGCA
* *
11421548 AAATAAAAAAATAAT
1 AAATAATAATATAAT
11421563 -AATAATAATATAAT
1 AAATAATAATATAAT
11421577 AAATATATAACTAT-AT
1 AAATA-ATAA-TATAAT
* *
11421593 AAATAA-AATACATGT
1 AAATAATAATATA-AT
* * *
11421608 AAATATTAACAAAAT
1 AAATAATAATATAAT
*
11421623 AAAATAA-AATAAAAT
1 -AAATAATAATATAAT
11421638 AAATAAATAA-ATAGAT
1 AAAT-AATAATATA-AT
11421654 AAATAA-AGATATACAT
1 AAATAATA-ATATA-AT
* *
11421670 --ATATTAATA-CA-
1 AAATAATAATATAAT
*
11421681 CAATAATAATA-AAT
1 AAATAATAATATAAT
*
11421695 AAATAATAAAATACAT
1 AAATAATAATATA-AT
11421711 AAA
1 AAA
11421714 ACACAAAGAA
Statistics
Matches: 115, Mismatches: 18, Indels: 35
0.68 0.11 0.21
Matches are distributed among these distances:
12 1 0.01
13 11 0.10
14 34 0.30
15 28 0.24
16 38 0.33
17 3 0.03
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (15 bp):
AAATAATAATATAAT
Found at i:11421917 original size:7 final size:7
Alignment explanation
Indices: 11421907--11421940 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
11421897 ACATTTTCAT
11421907 TTTTTTG
1 TTTTTTG
11421914 TTTTTTG
1 TTTTTTG
*
11421921 TGTTTTTT
1 T-TTTTTG
11421929 TTTTTTG
1 TTTTTTG
11421936 TTTTT
1 TTTTT
11421941 AACCAAAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:11422045 original size:41 final size:41
Alignment explanation
Indices: 11421948--11422312 Score: 459
Period size: 41 Copynumber: 9.1 Consensus size: 41
11421938 TTTAACCAAA
* * *
11421948 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATT
* *
11421991 GCTCCTCTGAACAGAGGCACTACGAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
11422032 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
* * * *
11422074 GCTCCTCTCAGCAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
11422115 GCTCCTCTAAACAGAGGCATCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
11422156 GCTCCTCTAAATAGAGGTACCACGACTTTGGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GGAAAGTAAATT
11422198 G---------ACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
11422230 GCTCCTCTAAACAGA---ACTACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
11422268 GCTCCTCTAAACAGAGGCACCACAACTTTTGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
11422309 GCTC
1 GCTC
11422313 ATTGACAATC
Statistics
Matches: 282, Mismatches: 24, Indels: 34
0.83 0.07 0.10
Matches are distributed among these distances:
32 13 0.05
33 17 0.06
38 37 0.13
41 135 0.48
42 53 0.19
43 27 0.10
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:11422099 original size:83 final size:83
Alignment explanation
Indices: 11421948--11422312 Score: 463
Period size: 83 Copynumber: 4.5 Consensus size: 83
11421938 TTTAACCAAA
* * * * *
11421948 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTGAACAGAGGCACTA
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
11422013 CGAC-TTGGAAAAGTAAATT
64 CGACTTTGGAAAAGTAAATT
* *
11422032 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTCAGCAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
11422097 GACTTT-GAAAAATAAATT
65 GACTTTGGAAAAGTAAATT
* * *
11422115 GCTCCTCTAAACAGAGGCATCACGACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGTACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
11422180 ACTTTGGGAAAGTAAATT
66 ACTTTGGAAAAGTAAATT
*
11422198 G---------ACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA---ACTACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
11422251 ACTTTGG-AAAGTAAATT
66 ACTTTGGAAAAGTAAATT
* *
11422268 GCTCCTCTAAACAGAGGCACCACAACTTTTGAAAGTAAATTGCTC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTC
11422313 ATTGACAATC
Statistics
Matches: 250, Mismatches: 19, Indels: 29
0.84 0.06 0.10
Matches are distributed among these distances:
70 11 0.04
71 12 0.05
74 44 0.18
79 33 0.13
82 40 0.16
83 76 0.30
84 30 0.12
85 4 0.02
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAAGTAAATT
Found at i:11422172 original size:124 final size:122
Alignment explanation
Indices: 11421948--11422312 Score: 477
Period size: 124 Copynumber: 3.0 Consensus size: 122
11421938 TTTAACCAAA
* * *
11421948 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTGAACAGAGGCA-CT
1 GCTCCTCT--ACAGAGGCACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCATC-
11422012 ACGAC-TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
61 ACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
11422074 GCTCCTCTCAGCAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCATCACG
1 GCTCCTCT-A-CAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCATCACG
* * *
11422139 ACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGTACCACGACTTTGGGAAAGTAAATT
64 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
* * *
11422198 G-------ACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA-AC-T-ACGAC
1 GCTCCTCTACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCATCACGAC
*
11422253 TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTT-GAAAGTAAATT
66 TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
11422309 GCTC
1 GCTC
11422313 ATTGACAATC
Statistics
Matches: 219, Mismatches: 14, Indels: 24
0.85 0.05 0.09
Matches are distributed among these distances:
111 12 0.05
112 46 0.21
113 1 0.00
114 1 0.00
115 43 0.20
116 1 0.00
124 80 0.37
125 9 0.04
126 26 0.12
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (122 bp):
GCTCCTCTACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCATCACGAC
TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
Found at i:11422227 original size:32 final size:33
Alignment explanation
Indices: 11422168--11422230 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
11422158 TCCTCTAAAT
*
11422168 AGAGGTACCACGACTTTGGGAAAGTAAATTGAC
1 AGAGGCACCACGACTTTGGGAAAGTAAATTGAC
11422201 AGAGGCACCACGACTTT-GGAAAGTAAATTG
1 AGAGGCACCACGACTTTGGGAAAGTAAATTG
11422231 CTCCTCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.21
Consensus pattern (33 bp):
AGAGGCACCACGACTTTGGGAAAGTAAATTGAC
Found at i:11422253 original size:38 final size:39
Alignment explanation
Indices: 11422207--11422312 Score: 160
Period size: 38 Copynumber: 2.7 Consensus size: 39
11422197 TGACAGAGGC
11422207 ACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA-
1 ACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAG
*
11422245 ACTACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
1 ACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA-G
* *
11422285 CACCACAACTTTTGAAAGTAAATTGCTC
1 -ACCACGACTTTGGAAAGTAAATTGCTC
11422313 ATTGACAATC
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
38 37 0.61
41 24 0.39
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (39 bp):
ACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAG
Found at i:11422290 original size:112 final size:114
Alignment explanation
Indices: 11422085--11422309 Score: 357
Period size: 112 Copynumber: 2.0 Consensus size: 114
11422075 CTCCTCTCAG
*
11422085 CAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCATCACGACTTTGGAAAG
1 CAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGACATCACGACTTTGGAAAG
* * *
11422150 TAAATTGCTCCTCTAAATAGAGGTACCACGACTTTGGGAAAGTAAATTGA
66 TAAATTGCTCCTCTAAACAGAGGCACCACAACTTT-GGAAAGTAAATTGA
* *
11422200 CAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGA-AC-T-ACGACTTTGGAAAG
1 CAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGACATCACGACTTTGGAAAG
*
11422262 TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAGTAAATTG
66 TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAGTAAATTG
11422310 CTCATTGACA
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
111 12 0.12
112 46 0.45
113 1 0.01
114 1 0.01
115 43 0.42
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (114 bp):
CAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGACATCACGACTTTGGAAAG
TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAGTAAATTGA
Found at i:11425852 original size:35 final size:35
Alignment explanation
Indices: 11425802--11425889 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
11425792 AATTTCATGG
11425802 ATGA-AATGAAAATGATGCTGATGCATAATGTTAT
1 ATGATAATGAAAATGATGCTGATGCATAATGTTAT
*
11425836 ATGATAATGAAAATGATGTTGATGCATAATGTTAT
1 ATGATAATGAAAATGATGCTGATGCATAATGTTAT
11425871 ATGATAATGAAAATGATGC
1 ATGATAATGAAAATGATGC
11425890 AAAAAGTCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 4 0.08
35 47 0.92
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (35 bp):
ATGATAATGAAAATGATGCTGATGCATAATGTTAT
Found at i:11427091 original size:120 final size:120
Alignment explanation
Indices: 11426870--11427092 Score: 430
Period size: 119 Copynumber: 1.9 Consensus size: 120
11426860 TCTTGTGTAG
*
11426870 GAAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTTGAAATTTTATTTTTAAGGA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTTGAAAATTTATTTTTAAGGA
11426935 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACTTTGATTTTCAA
66 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACTTTGATTTTCAA
11426990 GAAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTT-AAAATTTATTTTTAAGGA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTTGAAAATTTATTTTTAAGGA
11427054 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTG
66 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTG
11427093 ATTTTTATTT
Statistics
Matches: 102, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
119 56 0.55
120 46 0.45
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (120 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTTTTGAAAATTTATTTTTAAGGA
AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAACTTTGATTTTCAA
Found at i:11427202 original size:27 final size:25
Alignment explanation
Indices: 11427138--11427206 Score: 61
Period size: 27 Copynumber: 2.7 Consensus size: 25
11427128 GAAAGTAAAT
*
11427138 AAAAATAAAAAAATAAAGAAAAGTAA
1 AAAAATATAAAAATAAAGAAAAGT-A
*
11427164 AACAAAAATAAAAAT-AAGATAAAGATA
1 AA-AAATATAAAAATAAAGA-AAAG-TA
*
11427191 AAAAATAT-TAAATAAA
1 AAAAATATAAAAATAAA
11427207 TCTAATCTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
25 4 0.11
26 13 0.37
27 17 0.49
28 1 0.03
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.16
Consensus pattern (25 bp):
AAAAATATAAAAATAAAGAAAAGTA
Found at i:11427240 original size:13 final size:13
Alignment explanation
Indices: 11427222--11427264 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
11427212 TCTAATAAAT
*
11427222 AAATAAATAAAAC
1 AAATAAATAAAAA
11427235 AAATAAATAAAAA
1 AAATAAATAAAAA
11427248 AAATTTAAA-AAAAA
1 AAA--TAAATAAAAA
11427262 AAA
1 AAA
11427265 CCTGGAGCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 15 0.56
14 8 0.30
15 4 0.15
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAATAAAAA
Found at i:11427250 original size:17 final size:17
Alignment explanation
Indices: 11427218--11427250 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11427208 CTAATCTAAT
*
11427218 AAATAAATAAATAAAAC
1 AAATAAATAAAAAAAAC
11427235 AAATAAATAAAAAAAA
1 AAATAAATAAAAAAAA
11427251 TTTAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (17 bp):
AAATAAATAAAAAAAAC
Found at i:11428127 original size:19 final size:19
Alignment explanation
Indices: 11428082--11428127 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
11428072 AAGAAAAAAA
*
11428082 AATAATAATCAGATAATCG
1 AATAAAAATCAGATAATCG
11428101 AA-AAAAATCAGATAAAT-G
1 AATAAAAATCAGAT-AATCG
11428119 AATAAAAAT
1 AATAAAAAT
11428128 AAAATTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.63, C:0.07, G:0.09, T:0.22
Consensus pattern (19 bp):
AATAAAAATCAGATAATCG
Found at i:11428204 original size:11 final size:12
Alignment explanation
Indices: 11428182--11428335 Score: 65
Period size: 12 Copynumber: 12.4 Consensus size: 12
11428172 ATATTGCAAG
*
11428182 ATAAAAATAATA
1 ATAAATATAATA
11428194 AT-AATATAATA
1 ATAAATATAATA
11428205 ATAAATATATAACTA
1 AT-AA-ATATAA-TA
11428220 TATAAATA-ACATA
1 -ATAAATATA-ATA
*
11428233 CATGTAAATATTAACAAA
1 -A--TAAATA-T-A-ATA
11428251 ATAAA-ATAA-A
1 ATAAATATAATA
11428261 ATAAA-ATAA-A
1 ATAAATATAATA
11428271 ATAAATA-AATA
1 ATAAATATAATA
*
11428282 GATAAATA-AAGA
1 -ATAAATATAATA
* *
11428294 TATACATATATTA
1 -ATAAATATAATA
*
11428307 ATACATAATAATA
1 ATAAAT-ATAATA
11428320 ATAAATA-AATA
1 ATAAATATAATA
11428331 ATAAA
1 ATAAA
11428336 ATACATAAAA
Statistics
Matches: 116, Mismatches: 10, Indels: 33
0.73 0.06 0.21
Matches are distributed among these distances:
10 18 0.16
11 22 0.19
12 26 0.22
13 18 0.16
14 11 0.09
15 14 0.12
16 2 0.02
17 1 0.01
18 4 0.03
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (12 bp):
ATAAATATAATA
Found at i:11428228 original size:31 final size:31
Alignment explanation
Indices: 11428193--11428291 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
11428183 TAAAAATAAT
* *
11428193 AATAATATAATAATAAATATATAACTATATA
1 AATAAAATAATAATAAATATATAACTAAATA
* * *
11428224 AATAACATACAT-GTAAATAT-TAACAAAATAA
1 AATAAAATA-ATAATAAATATATAACTAAAT-A
* * *
11428255 AATAAAATAA-AATAAAATAAATAAATAGATA
1 AATAAAATAATAAT-AAATATATAACTAAATA
11428286 AATAAA
1 AATAAA
11428292 GATATACATA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
30 9 0.17
31 36 0.68
32 8 0.15
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (31 bp):
AATAAAATAATAATAAATATATAACTAAATA
Found at i:11428258 original size:5 final size:5
Alignment explanation
Indices: 11428248--11428279 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
11428238 AAATATTAAC
11428248 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
11428280 TAGATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:11428266 original size:15 final size:14
Alignment explanation
Indices: 11428248--11428291 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 14
11428238 AAATATTAAC
11428248 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
11428263 AAAATAAAATAAAT
1 AAAATAAAATAAAT
*
11428277 -AAAT-AGATAAAT
1 AAAATAAAATAAAT
11428289 AAA
1 AAA
11428292 GATATACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 7 0.26
13 6 0.22
14 4 0.15
15 10 0.37
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:11430349 original size:15 final size:16
Alignment explanation
Indices: 11430329--11430365 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
11430319 TACATGCATC
11430329 CTTTCCCTT-AAAAAA
1 CTTTCCCTTAAAAAAA
11430344 CTTTCCCTTAAAAAAA
1 CTTTCCCTTAAAAAAA
11430360 CTTTCC
1 CTTTCC
11430366 TTTCTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.35, C:0.30, G:0.00, T:0.35
Consensus pattern (16 bp):
CTTTCCCTTAAAAAAA
Found at i:11430374 original size:5 final size:5
Alignment explanation
Indices: 11430360--11430396 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
11430350 CTTAAAAAAA
* *
11430360 CTTTC CTTTC TTTTC TTTTC CTTTC CTTTC CTTTC CT
1 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CT
11430397 CTATTTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (5 bp):
CTTTC
Found at i:11431221 original size:24 final size:24
Alignment explanation
Indices: 11431193--11431238 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
11431183 AAGCTTAAAA
* * *
11431193 AAATATTTATTCCTAATTTTTTTT
1 AAATATTAATTCATAATATTTTTT
11431217 AAATATTAATTCATAATATTTT
1 AAATATTAATTCATAATATTTT
11431239 CCTCTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (24 bp):
AAATATTAATTCATAATATTTTTT
Found at i:11432096 original size:115 final size:115
Alignment explanation
Indices: 11431889--11432111 Score: 274
Period size: 115 Copynumber: 1.9 Consensus size: 115
11431879 TTTTAGTCAA
*
11431889 AAATGCCTTCAATAACACAATTCAATATTTTGTAAAAGATTATTCAAGGCGTTTTCTAGTCAAAA
1 AAATGCCTTCAATAACACAATTCAATATTTTGTAAAAGATTATTCAAGACGTTTTCTAGTCAAAA
* *
11431954 ATACCTTCAATAATCCACTCATTAAAATT-TAAGAGGATTATTTAGGCTAG
66 ATACCTTCAATAATCCACTCATAAAAATTAAAAGA-GATTATTTAGGCTAG
* * * * * *
11432004 AAATGCCTTTAATAACCCTATTCAATTTTTTGTAAAGGATTATTCAAGATGTTTTAC-AGGT-AA
1 AAATGCCTTCAATAACACAATTCAATATTTTGTAAAAGATTATTCAAGACGTTTT-CTA-GTCAA
* * *
11432067 AAATGCCTTGAATAAT-TACTTCATAAAAATTAAAAGAGATTATTT
64 AAATACCTTCAATAATCCAC-TCATAAAAATTAAAAGAGATTATTT
11432112 TTGGCCAAAA
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
114 2 0.02
115 83 0.90
116 7 0.08
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.36
Consensus pattern (115 bp):
AAATGCCTTCAATAACACAATTCAATATTTTGTAAAAGATTATTCAAGACGTTTTCTAGTCAAAA
ATACCTTCAATAATCCACTCATAAAAATTAAAAGAGATTATTTAGGCTAG
Found at i:11432787 original size:16 final size:15
Alignment explanation
Indices: 11432748--11432798 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
11432738 ATATTTTTCT
*
11432748 ATATTATTTGTAAAAA
1 ATATT-TTTATAAAAA
*
11432764 GT-TTTTTATAAAATA
1 ATATTTTTATAAAA-A
*
11432779 ATATTTTTATATAAA
1 ATATTTTTATAAAAA
11432794 ATATT
1 ATATT
11432799 CTCTCCAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 8 0.28
15 10 0.34
16 11 0.38
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (15 bp):
ATATTTTTATAAAAA
Found at i:11433704 original size:19 final size:19
Alignment explanation
Indices: 11433680--11433749 Score: 101
Period size: 19 Copynumber: 3.7 Consensus size: 19
11433670 TAATAAGGTT
11433680 TATATAATTGTTTAGATTA
1 TATATAATTGTTTAGATTA
11433699 TATATAATTGTTTATTG-TT-
1 TATATAATTGTTTA--GATTA
11433718 TATAT-ATTGTTTAGATTA
1 TATATAATTGTTTAGATTA
11433736 TATATAATTGTTTA
1 TATATAATTGTTTA
11433750 TTATTTTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
16 1 0.02
17 2 0.04
18 13 0.28
19 27 0.59
20 2 0.04
21 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (19 bp):
TATATAATTGTTTAGATTA
Found at i:11433731 original size:37 final size:38
Alignment explanation
Indices: 11433677--11433751 Score: 143
Period size: 37 Copynumber: 2.0 Consensus size: 38
11433667 GCATAATAAG
11433677 GTTTATATAATTGTTTAGATTATATATAATTGTTTATT
1 GTTTATATAATTGTTTAGATTATATATAATTGTTTATT
11433715 GTTTATAT-ATTGTTTAGATTATATATAATTGTTTATT
1 GTTTATATAATTGTTTAGATTATATATAATTGTTTATT
11433752 ATTTTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 29 0.78
38 8 0.22
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.59
Consensus pattern (38 bp):
GTTTATATAATTGTTTAGATTATATATAATTGTTTATT
Found at i:11433968 original size:29 final size:30
Alignment explanation
Indices: 11433888--11433983 Score: 131
Period size: 29 Copynumber: 3.2 Consensus size: 30
11433878 GCATAATAAG
* *
11433888 GTTTATATAATTGCTTAGATTATATATAATT
1 GTTTATAT-ATTGTTTACATTATATATAATT
*
11433919 GTTTATATATTATTTACATTATATATAATT
1 GTTTATATATTGTTTACATTATATATAATT
*
11433949 GTTTA-ATATTGTTTATATTATATATAATT
1 GTTTATATATTGTTTACATTATATATAATT
*
11433978 ATTTAT
1 GTTTAT
11433984 TGCTTGGTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
29 26 0.45
30 24 0.41
31 8 0.14
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (30 bp):
GTTTATATATTGTTTACATTATATATAATT
Found at i:11433983 original size:14 final size:14
Alignment explanation
Indices: 11433907--11433983 Score: 57
Period size: 14 Copynumber: 5.3 Consensus size: 14
11433897 ATTGCTTAGA
*
11433907 TTATATATAATTGT
1 TTATATATAATTAT
* *
11433921 TTATATATTATTTACA
1 TTATATA-TAATTA-T
*
11433937 TTATATATAATTGT
1 TTATATATAATTAT
**
11433951 TTA-ATATTGTTTAT
1 TTATATA-TAATTAT
11433965 ATTATATATAATTAT
1 -TTATATATAATTAT
11433980 TTAT
1 TTAT
11433984 TGCTTGGTTT
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
13 3 0.06
14 18 0.38
15 16 0.34
16 10 0.21
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (14 bp):
TTATATATAATTAT
Found at i:11435669 original size:68 final size:68
Alignment explanation
Indices: 11435552--11435678 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 68
11435542 TCCTTACACT
* * * *
11435552 AATGAATAAAATGTTTATAAAATTATTTTTGCTGACATATAAATGGATGATTACCTTCTATATAT
1 AATGAATAAAATCTTTATAAAATTATTTCTACTGACATATAAATAGATGATTACCTTCTATATAT
11435617 ATG
66 ATG
* ** *
11435620 AATGAATAAGATCTTTATAAAATTATTTCTACTGGTATATGAATAGATGATTACCTTCT
1 AATGAATAAAATCTTTATAAAATTATTTCTACTGACATATAAATAGATGATTACCTTCT
11435679 CACCTTCTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 51 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.41
Consensus pattern (68 bp):
AATGAATAAAATCTTTATAAAATTATTTCTACTGACATATAAATAGATGATTACCTTCTATATAT
ATG
Found at i:11436224 original size:15 final size:15
Alignment explanation
Indices: 11436204--11436238 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11436194 GATGTAACTC
*
11436204 TTTATCTATATTTGT
1 TTTATCGATATTTGT
*
11436219 TTTATCGATGTTTGT
1 TTTATCGATATTTGT
11436234 TTTAT
1 TTTAT
11436239 TAGACTTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.66
Consensus pattern (15 bp):
TTTATCGATATTTGT
Found at i:11436716 original size:56 final size:55
Alignment explanation
Indices: 11436524--11436728 Score: 232
Period size: 55 Copynumber: 3.7 Consensus size: 55
11436514 AAATATAAAA
* * * * * *
11436524 AAAATTAAAATATACAAGTCTATACTAACA-ACTACTAACCATCGGTATAGGTAAG
1 AAAATTAAAACATACAAATCTATACTGACAGGCT-TTAACCGTCGGTATAGGTAAG
* * * *
11436579 AAAATTAAAATATACAATTCTATACTGATAGTCTTTAACCGTCGGTATAGGTAAG
1 AAAATTAAAACATACAAATCTATACTGACAGGCTTTAACCGTCGGTATAGGTAAG
* * * *
11436634 AAAATTAAAACATATAAATCTATACTGACGGGCTTTAAGCGTCGGTATAGGTAAAA
1 AAAATTAAAACATACAAATCTATACTGACAGGCTTTAACCGTCGGTATAGGT-AAG
* * *
11436690 AAAATTAAAACATACAAATATATACTGATAGGCGTTAAC
1 AAAATTAAAACATACAAATCTATACTGACAGGCTTTAAC
11436729 TGTCAATAAA
Statistics
Matches: 128, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
55 91 0.71
56 37 0.29
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (55 bp):
AAAATTAAAACATACAAATCTATACTGACAGGCTTTAACCGTCGGTATAGGTAAG
Found at i:11440059 original size:27 final size:26
Alignment explanation
Indices: 11440015--11440066 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
11440005 CTTATGAGTT
*
11440015 TCATAATTAATTTGTGGCCCATTAAC
1 TCATAATCAATTTGTGGCCCATTAAC
* *
11440041 TCATAACTCAATTTTTGGCCTATTAA
1 TCATAA-TCAATTTGTGGCCCATTAA
11440067 GAAAGTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (26 bp):
TCATAATCAATTTGTGGCCCATTAAC
Found at i:11440909 original size:34 final size:34
Alignment explanation
Indices: 11440838--11440909 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 34
11440828 TTCCGCATGC
* *
11440838 TTTTTTATTTTATTTTATGGATTTTAGTTATCTT
1 TTTTTTATTTTATTTTATGCATTTTAATTATCTT
*
11440872 TTTTTTATTTTATTTTATTCA-TTTAATTAT-TT
1 TTTTTTATTTTATTTTATGCATTTTAATTATCTT
*
11440904 ATTTTT
1 TTTTTT
11440910 GAAATATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 7 0.21
33 8 0.24
34 19 0.56
ACGTcount: A:0.19, C:0.03, G:0.04, T:0.74
Consensus pattern (34 bp):
TTTTTTATTTTATTTTATGCATTTTAATTATCTT
Found at i:11442654 original size:21 final size:21
Alignment explanation
Indices: 11442619--11442659 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11442609 TATTAAGTAG
*
11442619 AAATTTGTTATATATATTTTAA
1 AAATTTGTCATATAT-TTTTAA
11442641 AAATTT-TCATATATTTTTA
1 AAATTTGTCATATATTTTTA
11442660 TTCTAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 7 0.39
22 6 0.33
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
AAATTTGTCATATATTTTTAA
Found at i:11444176 original size:23 final size:22
Alignment explanation
Indices: 11444150--11444194 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
11444140 ACTTCTCAAT
11444150 TAATTAAATAAAATTATA-ATATA
1 TAATTAAA-AAAA-TATACATATA
11444173 TAATTAAAAAAATATACATATA
1 TAATTAAAAAAATATACATATA
11444195 AAAAATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 9 0.43
23 8 0.38
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TAATTAAAAAAATATACATATA
Found at i:11449117 original size:16 final size:16
Alignment explanation
Indices: 11449098--11449130 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11449088 TTTATTATAT
11449098 AAATATTATATAAATA
1 AAATATTATATAAATA
11449114 AAATATTATATAAATA
1 AAATATTATATAAATA
11449130 A
1 A
11449131 TATTAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATATTATATAAATA
Found at i:11449139 original size:18 final size:19
Alignment explanation
Indices: 11449100--11449203 Score: 83
Period size: 22 Copynumber: 5.4 Consensus size: 19
11449090 TATTATATAA
11449100 ATATTATATAAATAA-A--
1 ATATTATATAAATAATATT
11449116 ATATTATATAAATAATATT
1 ATATTATATAAATAATATT
11449135 A-ATTAATATTTTAAATAATATT
1 ATATT-ATA---TAAATAATATT
*
11449157 ATATTCATAAATAAATAGTATT
1 ATATT-AT--ATAAATAATATT
*
11449179 ATATTA-ATAAATATTATT
1 ATATTATATAAATAATATT
*
11449197 CTATTAT
1 ATATTAT
11449204 TAATAGCAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
16 15 0.21
17 1 0.01
18 19 0.26
19 4 0.05
21 1 0.01
22 27 0.37
23 5 0.07
25 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (19 bp):
ATATTATATAAATAATATT
Found at i:11449171 original size:22 final size:22
Alignment explanation
Indices: 11449123--11449191 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
11449113 AAAATATTAT
*
11449123 ATAAATAATATTA-ATTAATATT
1 ATAAATAATATTATATTAATA-A
* *
11449145 TTAAATAATATTATATTCATAA
1 ATAAATAATATTATATTAATAA
*
11449167 ATAAATAGTATTATATTAATAA
1 ATAAATAATATTATATTAATAA
11449189 ATA
1 ATA
11449192 TTATTCTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
22 34 0.85
23 6 0.15
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (22 bp):
ATAAATAATATTATATTAATAA
Found at i:11452276 original size:28 final size:26
Alignment explanation
Indices: 11452262--11452311 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11452252 ATTTTAAAAT
11452262 TATTTTTATGATTTTTTTTATTTGTAA
1 TATTTTTATGATTTTTTTTATTT-TAA
*
11452289 TGTTTTTATGA-TTTTTTTATTTT
1 TATTTTTATGATTTTTTTTATTTT
11452312 TAACTCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 11 0.50
27 10 0.45
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (26 bp):
TATTTTTATGATTTTTTTTATTTTAA
Found at i:11454178 original size:3 final size:3
Alignment explanation
Indices: 11454164--11454209 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
11454154 TCAAAGATTT
* * * *
11454164 TCA TCT TCA TCA TCA TCA TCA TCA TTA TTA TGA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
11454210 TATTATTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.41
Consensus pattern (3 bp):
TCA
Found at i:11454210 original size:21 final size:21
Alignment explanation
Indices: 11454175--11454242 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
11454165 CATCTTCATC
*
11454175 ATCATCATCATCATTATTATG
1 ATCATCATCATCATTATTATT
11454196 ATCATCATCATCATTATTATT
1 ATCATCATCATCATTATTATT
* *
11454217 ATTATCATTATCATTATTATT
1 ATCATCATCATCATTATTATT
11454238 ATCAT
1 ATCAT
11454243 TCTACATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.01, T:0.49
Consensus pattern (21 bp):
ATCATCATCATCATTATTATT
Found at i:11454225 original size:15 final size:15
Alignment explanation
Indices: 11454175--11454236 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
11454165 CATCTTCATC
* *
11454175 ATCATCATCATCATT
1 ATCATTATCATTATT
* * * *
11454190 ATTATGATCATCATC
1 ATCATTATCATTATT
*
11454205 ATCATTATTATTATT
1 ATCATTATCATTATT
11454220 ATCATTATCATTATT
1 ATCATTATCATTATT
11454235 AT
1 AT
11454237 TATCATTCTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.34, C:0.16, G:0.02, T:0.48
Consensus pattern (15 bp):
ATCATTATCATTATT
Found at i:11456488 original size:55 final size:54
Alignment explanation
Indices: 11456379--11456640 Score: 223
Period size: 55 Copynumber: 5.0 Consensus size: 54
11456369 TTTATTTTTA
*
11456379 TTTTTT-AAAATCTTGTTTGAAAATGGCTCCTCCC-AAATAGAGGCTTTGAAAC-
1 TTTTTTAAAAATCTTGTTTGAAAATGGCTCC-CCCTAAATAGAGGCTTTAAAACT
*
11456431 TTTTTTAAAAAGTCTTATTTGAAAATGGCCTCCCCCTAAATAGAGG-TTCTAAAACT
1 TTTTTTAAAAA-TCTTGTTTGAAAATGG-CTCCCCCTAAATAGAGGCTT-TAAAACT
*
11456487 TTTTTTAAAAAATCTTGTTTGAAAATGGCTCCCCCTAAATAGAGGCTTTGAAA--
1 TTTTTT-AAAAATCTTGTTTGAAAATGGCTCCCCCTAAATAGAGGCTTTAAAACT
* * * * * * *
11456540 ---TTTAAAAGT-TTGTTCGAAAATGACTCCTCCTAAATAAAAGCTTTGAAAC-
1 TTTTTTAAAAATCTTGTTTGAAAATGGCTCCCCCTAAATAGAGGCTTTAAAACT
* * * * *
11456589 ---TTT-AAAATCTTGTTTGAAAATAGCTCATCCC-AAACAAAGGCTTTGAAACT
1 TTTTTTAAAAATCTTGTTTGAAAATGGCTC-CCCCTAAATAGAGGCTTTAAAACT
11456639 TT
1 TT
11456641 AAAATCTGGT
Statistics
Matches: 178, Mismatches: 18, Indels: 28
0.79 0.08 0.12
Matches are distributed among these distances:
48 38 0.21
49 38 0.21
50 5 0.03
52 6 0.03
53 4 0.02
54 20 0.11
55 39 0.22
56 23 0.13
57 5 0.03
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (54 bp):
TTTTTTAAAAATCTTGTTTGAAAATGGCTCCCCCTAAATAGAGGCTTTAAAACT
Found at i:11456609 original size:49 final size:49
Alignment explanation
Indices: 11456382--11456653 Score: 228
Period size: 49 Copynumber: 5.3 Consensus size: 49
11456372 ATTTTTATTT
* * *
11456382 TTTAAAATCTTGTTTGAAAATGGCTCCTCCCAAATAGAGGCTTTGAAAC
1 TTTAAAATCTTGTTTGAAAATGACTCCTCCTAAATAAAGGCTTTGAAAC
* * * * *
11456431 TTTTTTAAAAAGTCTTATTTGAAAATGGCCTCCCCCTAAATAGAGG-TTCTAAAAC
1 ---TTT-AAAA-TCTTGTTTGAAAAT-GACTCCTCCTAAATAAAGGCTT-TGAAAC
* * *
11456486 TTTTTTTAAAAAATCTTGTTTGAAAATGGCTCCCCCTAAATAGAGGCTTTGAAA-
1 ----TTT--AAAATCTTGTTTGAAAATGACTCCTCCTAAATAAAGGCTTTGAAAC
* *
11456540 TTTAAAAGT-TTGTTCGAAAATGACTCCTCCTAAATAAAAGCTTTGAAAC
1 TTTAAAA-TCTTGTTTGAAAATGACTCCTCCTAAATAAAGGCTTTGAAAC
* * *
11456589 TTTAAAATCTTGTTTGAAAAT-AGCTCATCCCAAACAAAGGCTTTGAAAC
1 TTTAAAATCTTGTTTGAAAATGA-CTCCTCCTAAATAAAGGCTTTGAAAC
*
11456638 TTTAAAATCTGGTTTG
1 TTTAAAATCTTGTTTG
11456654 GATATGCCTC
Statistics
Matches: 190, Mismatches: 19, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
48 40 0.21
49 56 0.29
50 3 0.02
52 3 0.02
53 4 0.02
54 15 0.08
55 43 0.23
56 21 0.11
57 5 0.03
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35
Consensus pattern (49 bp):
TTTAAAATCTTGTTTGAAAATGACTCCTCCTAAATAAAGGCTTTGAAAC
Found at i:11457660 original size:26 final size:25
Alignment explanation
Indices: 11457596--11457684 Score: 65
Period size: 26 Copynumber: 3.4 Consensus size: 25
11457586 CATCTTTTCC
* *
11457596 TTTTTTT-TTTCTTCTTTAATTTTT
1 TTTTTTTGTTTATTCTTTTATTTTT
** *
11457620 TTTCATTGTGCTATTCTTTTATTTTT
1 TTTTTTTGT-TTATTCTTTTATTTTT
*
11457646 TATTTTTTGTTTATTGTTTT-TCTTTT
1 T-TTTTTTGTTTATTCTTTTAT-TTTT
11457672 TCTTATTTTGTTT
1 T-TT-TTTTGTTT
11457685 TTTTCCACTT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
24 5 0.10
25 2 0.04
26 29 0.58
27 14 0.28
ACGTcount: A:0.09, C:0.08, G:0.06, T:0.78
Consensus pattern (25 bp):
TTTTTTTGTTTATTCTTTTATTTTT
Found at i:11462737 original size:3 final size:3
Alignment explanation
Indices: 11462731--11462784 Score: 81
Period size: 3 Copynumber: 18.0 Consensus size: 3
11462721 TTTTTTTCTT
* * *
11462731 TTA TTA TTA TCA TTG TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11462779 TTA TTA
1 TTA TTA
11462785 GAAAGAATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:11466246 original size:15 final size:15
Alignment explanation
Indices: 11466226--11466275 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
11466216 TGTCGTTATC
11466226 ATTATTATCATTACT
1 ATTATTATCATTACT
* **
11466241 ATTATTATTAACACT
1 ATTATTATCATTACT
* *
11466256 ATTATTATGATTATT
1 ATTATTATCATTACT
11466271 ATTAT
1 ATTAT
11466276 CATTATACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTATTATCATTACT
Found at i:11466270 original size:12 final size:12
Alignment explanation
Indices: 11466221--11466281 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
11466211 TTCATTGTCG
11466221 TTATCATTATTA
1 TTATCATTATTA
*
11466233 TCATTACTATTATTA
1 TTA-T-C-ATTATTA
* *
11466248 TTAACACTATTA
1 TTATCATTATTA
*
11466260 TTATGATTATTA
1 TTATCATTATTA
11466272 TTATCATTAT
1 TTATCATTAT
11466282 ACATTTTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
12 26 0.68
13 2 0.05
14 1 0.03
15 9 0.24
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (12 bp):
TTATCATTATTA
Found at i:11470057 original size:13 final size:13
Alignment explanation
Indices: 11470039--11470065 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11470029 AGAGGTTAAC
11470039 AACATAAATTAGT
1 AACATAAATTAGT
11470052 AACATAAATTAGT
1 AACATAAATTAGT
11470065 A
1 A
11470066 GGGTTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
AACATAAATTAGT
Found at i:11472872 original size:304 final size:303
Alignment explanation
Indices: 11472510--11473243 Score: 920
Period size: 304 Copynumber: 2.4 Consensus size: 303
11472500 AAAAATGCCA
* * *
11472510 TCAATAATCCATAGAAAAAAGTTG-GAACGGATGT-TTGAAGGTG-TTTTTGCCTCAAAACGCCA
1 TCAATAATCCATACAAAAAGGTTGAG-ACGGAT-TCTTGAAGGTGTTTTTTGCC-CAAAACGCCT
** * *
11472572 TTAATATTTAAAACAATAAATTTTTAGGAGGATTATTGAAGTCAGTTTTGGTAAAAAATGTCTTT
63 TTAATATTCCACACAATAAATTTTTAGGAGGATTATTGAAG-CAGTTTTGGTAAAAAATGCCTTT
* * * * * * *
11472637 AATATTCCAGAAGACAAATTTTTATAGTCGGATTATTGAAGGCATTTATTTCCAAAAATGCCTTC
127 AATATTCCAAAAGACAAATTTTAATAATCAGATTATTAAAAGCAGTTATTTCCAAAAATGCCTTC
* * * * *
11472702 AATAACATTTTGTTAGGGATTATTCAAAGCGTTACCTGTAGGAAAATACCCTTCATAATCCATTC
192 AATAAAATTTTATTAAGGATTATTCAAAGCATTACCCGTAGGAAAATACCCTTCATAATCCATTC
* *
11472767 AATTATTTTTTAGTTGGTATTATTAAAGGCGTTTTTTTAAAACACAT
257 AATTAATTTTTAGTTGGTATTATTAAAGGCGTTTTCTTAAAACACAT
* *
11472814 TCAATAATCCATACAAAAAGGTTGAGACAGATTCTTGAAGGCGTTTTTTGCCCAAAACGCCTTTA
1 TCAATAATCCATACAAAAAGGTTGAGACGGATTCTTGAAGGTGTTTTTTGCCCAAAACGCCTTTA
* * *
11472879 ATATTCCACATAATAAATTTTTGAGG-GGATTATAGAAGGCATTTTTGGTAAAAAATGCCTTTAA
66 ATATTCCACACAATAAATTTTT-AGGAGGATTATTGAA-GCAGTTTTGGTAAAAAATGCCTTTAA
* **
11472943 TATTCCAAAAGATAAATTTTAATAATCAGATTATTAAAAGTGGTTATTTCCAAAAATGCCTTCAA
129 TATTCCAAAAGACAAATTTTAATAATCAGATTATTAAAAGCAGTTATTTCCAAAAATGCCTTCAA
* * * ** * **
11473008 TAAAATTTTATTAATGATTATTGAAGGCATTACCCGTAGGAAAATGTCTTTCATAATCCATTTGA
194 TAAAATTTTATTAAGGATTATTCAAAGCATTACCCGTAGGAAAATACCCTTCATAATCCATTCAA
* * ** *
11473073 TTAATTTTTAGTTGGTATTATTGAAGGTGTTTTCTTAAAATGCCT
259 TTAATTTTTAGTTGGTATTATTAAAGGCGTTTTCTTAAAACACAT
* * *
11473118 TCAATAATCCATACAAAAAGGCTGAGATGGATTCTTGAAGGTGTTTTTTGCCCAAAACACCTTTA
1 TCAATAATCCATACAAAAAGGTTGAGACGGATTCTTGAAGGTGTTTTTTGCCCAAAACGCCTTTA
* * * *
11473183 ATATTGCACACAATAAATTTTT-GGAGGGATTATTGAAAGCGGTTTTTGTAAAAAATACCTT
66 ATATTCCACACAATAAATTTTTAGGA-GGATTATTG-AAGCAGTTTTGGTAAAAAATGCCTT
11473244 CAAAATTTTC
Statistics
Matches: 368, Mismatches: 54, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
302 2 0.01
303 1 0.00
304 350 0.95
305 15 0.04
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (303 bp):
TCAATAATCCATACAAAAAGGTTGAGACGGATTCTTGAAGGTGTTTTTTGCCCAAAACGCCTTTA
ATATTCCACACAATAAATTTTTAGGAGGATTATTGAAGCAGTTTTGGTAAAAAATGCCTTTAATA
TTCCAAAAGACAAATTTTAATAATCAGATTATTAAAAGCAGTTATTTCCAAAAATGCCTTCAATA
AAATTTTATTAAGGATTATTCAAAGCATTACCCGTAGGAAAATACCCTTCATAATCCATTCAATT
AATTTTTAGTTGGTATTATTAAAGGCGTTTTCTTAAAACACAT
Found at i:11476731 original size:80 final size:79
Alignment explanation
Indices: 11476637--11476884 Score: 354
Period size: 80 Copynumber: 3.1 Consensus size: 79
11476627 CATCATTCAA
* * *
11476637 CAAACCATTCAGCATACGATTCAGCCCTCCAATATCATACAAAACCATTCAGCAAAACAATATTA
1 CAAACCATTCAGCATACGATTCAGCCCT-CAATATCATACAATACCATTAAGCAAAACAATATCA
11476702 GACAACAAGGTTTAG
65 GACAACAAGGTTTAG
* * * *
11476717 CAAACCATTCAGCATATGATTCAGGTCCCT-AATATCATATAATACCATTTAGTAAAACAATATC
1 CAAACCATTCAGCATACGATTCA-G-CCCTCAATATCATACAATACCATTAAGCAAAACAATATC
* *
11476781 CGACAACAAGGTTCAG
64 AGACAACAAGGTTTAG
*
11476797 CAAACCATCCAGCATACGATTCAGCCCTTCAATATCATACAATACCATTAAGCAAAACAATATCA
1 CAAACCATTCAGCATACGATTCAGCCC-TCAATATCATACAATACCATTAAGCAAAACAATATCA
*
11476862 GACAACAAGATTTAG
65 GACAACAAGGTTTAG
11476877 CAAACCAT
1 CAAACCAT
11476885 AATATTTAAA
Statistics
Matches: 148, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.02
79 2 0.01
80 138 0.93
81 1 0.01
82 4 0.03
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.23
Consensus pattern (79 bp):
CAAACCATTCAGCATACGATTCAGCCCTCAATATCATACAATACCATTAAGCAAAACAATATCAG
ACAACAAGGTTTAG
Found at i:11481150 original size:24 final size:26
Alignment explanation
Indices: 11481114--11481162 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
11481104 GAAAAAATTT
*
11481114 TATTATTATTATTATTATTTTATACA
1 TATTATTATTATTATTATTTAATACA
*
11481140 TATT-TTA-TATTTTTATTTAATAC
1 TATTATTATTATTATTATTTAATAC
11481163 TTGGATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 3 0.14
26 4 0.19
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (26 bp):
TATTATTATTATTATTATTTAATACA
Found at i:11489527 original size:134 final size:134
Alignment explanation
Indices: 11489329--11489659 Score: 319
Period size: 134 Copynumber: 2.5 Consensus size: 134
11489319 GAGCAATGAC
* * * * * *
11489329 ATTTTTCTCATAAAAATGCCACTAAATTAGCAGTGTCTCAAATATATAAACGCTGCCAATATAGA
1 ATTTTTCTCATAAAAATACCACTAAATTAGCAGCGTCTCAAAGATACAAACGCAGCCAAAATAGA
* * *
11489394 GGTGTTTTCATATACAAACACCTCTAAAGTAACGACGTTTTCATA-AACAAATGCCACCAAAGCA
66 AGTATTTTCAAATACAAACACCTCTAAAGTAACGACGTTTT-ATAGAACAAATGCCACCAAAGCA
*
11489458 ACGGT
130 ACAGT
* * *
11489463 ATTTTTCTCATAAAAATACCACTAAATTAG-TGACGTCTCAAAGATACAAATGCAGCTAAAATAG
1 ATTTTTCTCATAAAAATACCACTAAATTAGCAG-CGTCTCAAAGATACAAACGCAGCCAAAATAG
* ** * ** * * *
11489527 AAGTATTTTCAAATATAAATGCCTTTAAAGTAGTGACGTTTTTTAGTTATAAATGCCACCAAAGC
65 AAGTATTTTCAAATACAAACACCTCTAAAGTAACGACGTTTTATAG-AACAAATGCCACCAAAGC
11489592 AACAGT
129 AACAGT
*** * * * * *
11489598 A--TTTAAAAAAAAAAAACGTCACTAAATTAGCAGCATCTCAAAGATACAAACGCCGCTAAAAT
1 ATTTTTCTCATAAAAATAC--CACTAAATTAGCAGCGTCTCAAAGATACAAACGCAGCCAAAAT
11489660 GGTGCATTTC
Statistics
Matches: 160, Mismatches: 31, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
133 14 0.09
134 86 0.54
135 59 0.37
136 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.27
Consensus pattern (134 bp):
ATTTTTCTCATAAAAATACCACTAAATTAGCAGCGTCTCAAAGATACAAACGCAGCCAAAATAGA
AGTATTTTCAAATACAAACACCTCTAAAGTAACGACGTTTTATAGAACAAATGCCACCAAAGCAA
CAGT
Found at i:11490050 original size:14 final size:14
Alignment explanation
Indices: 11490022--11490063 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
11490012 TAAAAAAGAT
*
11490022 TCATTTTTTCCTTTA
1 TCATTTTTT-ATTTA
11490037 TCATTTTTTATTTA
1 TCATTTTTTATTTA
11490051 TC-TTTTATTATTT
1 TCATTTT-TTATTT
11490064 TATTTTTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 4 0.16
14 12 0.48
15 9 0.36
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (14 bp):
TCATTTTTTATTTA
Found at i:11490057 original size:21 final size:21
Alignment explanation
Indices: 11490024--11490072 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
11490014 AAAAAGATTC
*
11490024 ATTTTT-TCCTTTATCATTTT
1 ATTTTTATCTTTTATCATTTT
*
11490044 -TTATTTATCTTTTATTATTTT
1 ATT-TTTATCTTTTATCATTTT
11490065 ATTTTTAT
1 ATTTTTAT
11490073 GAAATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 2 0.08
20 3 0.12
21 17 0.71
22 2 0.08
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.73
Consensus pattern (21 bp):
ATTTTTATCTTTTATCATTTT
Found at i:11490096 original size:16 final size:15
Alignment explanation
Indices: 11490060--11490098 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
11490050 ATCTTTTATT
11490060 ATTTTATTTTTATGAA
1 ATTTT-TTTTTATGAA
* *
11490076 ATTTTTTTGTATTAA
1 ATTTTTTTTTATGAA
11490091 ATTTTTTT
1 ATTTTTTT
11490099 AAATACTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (15 bp):
ATTTTTTTTTATGAA
Found at i:11492935 original size:164 final size:164
Alignment explanation
Indices: 11492727--11493143 Score: 432
Period size: 161 Copynumber: 2.6 Consensus size: 164
11492717 AATCTCGACC
* * * *
11492727 TCTATGAATATTTCTCTAAAACA-AGACCTTGAAACTTTAAAATTTAAACATCCTGCCTTGAAGA
1 TCTATGAATACTCCTCTAAAA-AGAGGCCTTGAAACTTTAAAATTTAAACATTCTGCCTTGAAGA
* * * * * ** *
11492791 CTTACAAATCATGAAACTAGAATTGATTTAACTTA-AAAGACTTATGAATCTTG-TCTAAAGGAC
65 CTTAC-AATCATGAAACTAAAATAGATTCAACTTAGAAAAACCTAAAAATCTTGCTCGAAA-GAC
*** *
11492854 TAAGAGATTACATTTGGATGTCTTACAAATCATGACA
128 TAAGAGATTACACCCGGAGGTCTTACAAATCATGACA
* * * *
11492891 TTTATGAATACTCCTCTAAAAAGAGGCCTTGAAACTTAAAAATTTAAACATTATGCTTTGAAGAC
1 TCTATGAATACTCCTCTAAAAAGAGGCCTTGAAACTTTAAAATTTAAACATTCTGCCTTGAAGAC
** * * * *
11492956 TT---ATTGTGACACTAAAATAGATTCAACTTAGAAAAACCTAAAAATTTTGCTCGAAATACTTA
66 TTACAATCATGAAACTAAAATAGATTCAACTTAGAAAAACCTAAAAATCTTGCTCGAAAGACTAA
* * *
11493018 GAGATTACGCCCGGAGGTTTTACAAATCTTGACA
131 GAGATTACACCCGGAGGTCTTACAAATCATGACA
* * **
11493052 TCTATGAATACTCCTCTAAAAAGAGGCCTTCAAACTTTAAAATTTAAACATTCTACCCGGAAGAC
1 TCTATGAATACTCCTCTAAAAAGAGGCCTTGAAACTTTAAAATTTAAACATTCTGCCTTGAAGAC
* * *
11493117 TTACGAATCTTGACACCAAAATAGATT
66 TTAC-AATCATGAAACTAAAATAGATT
11493144 TAGTTCGAAA
Statistics
Matches: 206, Mismatches: 40, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
160 22 0.11
161 103 0.50
162 5 0.02
163 1 0.00
164 57 0.28
165 18 0.09
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (164 bp):
TCTATGAATACTCCTCTAAAAAGAGGCCTTGAAACTTTAAAATTTAAACATTCTGCCTTGAAGAC
TTACAATCATGAAACTAAAATAGATTCAACTTAGAAAAACCTAAAAATCTTGCTCGAAAGACTAA
GAGATTACACCCGGAGGTCTTACAAATCATGACA
Found at i:11493821 original size:23 final size:22
Alignment explanation
Indices: 11493795--11493848 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
11493785 AACTAAACTA
* * *
11493795 GGCTTAAAGTGTCAGCCAATTTG
1 GGCTTAAAGTGCCA-ACAATATG
*
11493818 GGCTT-AGGTGCCAACAATATG
1 GGCTTAAAGTGCCAACAATATG
11493839 GGCTTAAAGT
1 GGCTTAAAGT
11493849 ATTCGCTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 11 0.44
22 9 0.36
23 5 0.20
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (22 bp):
GGCTTAAAGTGCCAACAATATG
Found at i:11494730 original size:167 final size:164
Alignment explanation
Indices: 11494455--11494952 Score: 688
Period size: 167 Copynumber: 3.0 Consensus size: 164
11494445 GAAAATCCTT
**
11494455 AAATACTCACATAAAATAATTATTTATAATAATAATTTTTTTCTTAAAATATAGGAAATATATTA
1 AAATACTCACATAAAATAATTATTTATAATAATAATTTTTTT-TTAAAATATATAAAATATATTA
* * *
11494520 ATAATATATTAAAAGAA-ATTTTTAGGTACAACATAT-AAAACAAAATTCACAATTATAATAAGA
65 ATAATATA-TAAAA-AAGA-TTTTAGGTGCAATATATAAAAACAAAATTCAAAATTATAATAAGA
** * * *
11494583 AAAAACATTATAATACGAACATGTAATATATAATAAGC
127 AAAAATGTTATAATAAGAACATGTAACATATAATAAGA
11494621 AAATACTCACATAAAATAATTATTTATAATAATAAATTTTTTTTTGAAAATATATAAAATATATT
1 AAATACTCACATAAAATAATTATTTATAATAAT-AATTTTTTTTT-AAAATATATAAAATATATT
*
11494686 AATAATATATAAAAAAGATTTGTAGATGCAATATATAAAAACAAAATTCAAAATTATAATAAGAA
64 AATAATATATAAAAAAGATTT-TAGGTGCAATATATAAAAACAAAATTCAAAATTATAATAAGAA
*
11494751 AAAATGTTATAATAAAAACATGTAACATATAATAAGA
128 AAAATGTTATAATAAGAACATGTAACATATAATAAGA
* *
11494788 AAAAACTCACATAAAATAATTGTTTAT-AT--TAA-TTTTTTTTAAAATATATAAAATATATTAA
1 AAATACTCACATAAAATAATTATTTATAATAATAATTTTTTTTTAAAATATATAAAATATATTAA
* *
11494849 TAATTTATAAAAAAAAAGATTATTAGGTGCAATATATAAAAACAAAATTCAAAATTATAAT--TA
66 TAA--TAT-ATAAAAAAGATT-TTAGGTGCAATATATAAAAACAAAATTCAAAATTATAATAAGA
*
11494912 AAAAATGTTATGATAAGAACATGTAACATATAATAAGA
127 AAAAATGTTATAATAAGAACATGTAACATATAATAAGA
11494950 AAA
1 AAA
11494953 ACTATTTGGT
Statistics
Matches: 304, Mismatches: 19, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
161 24 0.08
162 48 0.16
163 5 0.02
164 49 0.16
165 6 0.02
166 54 0.18
167 118 0.39
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (164 bp):
AAATACTCACATAAAATAATTATTTATAATAATAATTTTTTTTTAAAATATATAAAATATATTAA
TAATATATAAAAAAGATTTTAGGTGCAATATATAAAAACAAAATTCAAAATTATAATAAGAAAAA
ATGTTATAATAAGAACATGTAACATATAATAAGA
Found at i:11495363 original size:20 final size:20
Alignment explanation
Indices: 11495312--11495368 Score: 68
Period size: 18 Copynumber: 3.0 Consensus size: 20
11495302 TAAAATAATT
*
11495312 ATTTA-TAATAATA-ATAAT
1 ATTTATTAATAATATATAAA
*
11495330 ATTT-TTTA-AATATATAAA
1 ATTTATTAATAATATATAAA
11495348 ATTTATTAATAATATATAAA
1 ATTTATTAATAATATATAAA
11495368 A
1 A
11495369 ATATTTTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 4 0.12
18 14 0.44
19 3 0.09
20 11 0.34
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTTATTAATAATATATAAA
Found at i:11495391 original size:251 final size:250
Alignment explanation
Indices: 11494760--11495517 Score: 862
Period size: 251 Copynumber: 3.0 Consensus size: 250
11494750 AAAAATGTTA
* * *
11494760 TAATAAAAACATGTAACATATAATAAGAAAAAACTCACATAAAATAATTGTTTAT-AT--TAATT
1 TAAT-AAAACATGTAACATATAATAAGCAAATACTCACATAAAATAATTATTTATAATAATAATT
*
11494822 TTTTTTAAAATATATAAAATATATTAATAATTTATAAAAAAAAAGATTATTAGGTGCAATATATA
65 TTTTTT-AAATATATAAAATATATTAATAA--TAT--ATAAAAAGATT-TTAGGTGCAATATATA
* * * *
11494887 AAAACAAAATTCAAAATTATAAT--TAAAAAATGTTATGATAAGAACATGTAACATATAATAAGA
124 AAAAAAAAATTCAAAATTATAATAAGAAAAAATGTTATAATAAGAACATATAACATATAATAA-A
** *** * *
11494950 AAA-ACTATTTGGTTGAAAAAAAAACAT-TTATTTATAATTGTGAATTATAATAAGAAAAAAAT-
188 AAATA-TATTTGGTT---AAAAAAA-ATGTTATTTATAATTGTGAATT-TTGTTTTAATAAATTG
***
11495012 ATTA
247 AACC
* *
11495016 TAATAAGAACATGTAACATATAATAAACAAATACTCACAAAAAATAATTATTTATAATAA-AATT
1 TAATAA-AACATGTAACATATAATAAGCAAATACTCACATAAAATAATTATTTATAATAATAATT
* * * *
11495080 TTCTTAAAATATATAAACTATATTAATAATATGTAAAAAGATTTTAGGTGCAATATATAAAAAAA
65 TTTTTTAAATATATAAAATATATTAATAATATATAAAAAGATTTTAGGTGCAATATATAAAAAAA
*
11495145 AAATTCAAAATTATAATAAGAAAAAATGTTATAATAAGAACATATAACATAAAATAATAAAATAT
130 AAATTCAAAATTATAATAAGAAAAAATGTTATAATAAGAACATATAACATATAATAA-AAAATAT
* * * *
11495210 ATTTGGTT-AAAAAAATGTTATTTATAATTATGAATTTTGTTTTTATACATTGCACC
194 ATTTGGTTAAAAAAAATGTTATTTATAATTGTGAATTTTGTTTTAATAAATTGAACC
*
11495266 TATTAAAACATGTAA-ATAT-ATAAGCAAATACTCACATAAAATAATTATTTATAATAATAATAA
1 TAATAAAACATGTAACATATAATAAGCAAATACTCACATAAAATAATTATTTATAATAATAAT--
* * * *
11495329 TATTTTTTAAATATATAAAATTTATTAATAATATATAAAAATATTTTAGGTACAACATATAAAAA
64 T-TTTTTTAAATATATAAAATATATTAATAATATATAAAAAGATTTTAGGTGCAATATATAAAAA
* * *
11495394 TAAAATTCAAAATTATAATAAGAAAAAATGTTATAATAAGAACATCTAATATATAATAAAAAATA
128 AAAAATTCAAAATTATAATAAGAAAAAATGTTATAATAAGAACATATAACATATAATAAAAAATA
* * * *
11495459 T-TTT-ATTGAAAAAAAA-GTTATTTATGATTGTGAATTTTGTTTTCATATATTGAACC
193 TATTTGGTT-AAAAAAAATGTTATTTATAATTGTGAATTTTGTTTTAATAAATTGAACC
11495515 TAA
1 TAA
11495518 AAGTTTTTAT
Statistics
Matches: 435, Mismatches: 52, Indels: 37
0.83 0.10 0.07
Matches are distributed among these distances:
247 36 0.08
248 9 0.02
249 57 0.13
250 44 0.10
251 110 0.25
252 38 0.09
253 9 0.02
254 47 0.11
255 6 0.01
256 47 0.11
257 24 0.06
258 8 0.02
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.35
Consensus pattern (250 bp):
TAATAAAACATGTAACATATAATAAGCAAATACTCACATAAAATAATTATTTATAATAATAATTT
TTTTTAAATATATAAAATATATTAATAATATATAAAAAGATTTTAGGTGCAATATATAAAAAAAA
AATTCAAAATTATAATAAGAAAAAATGTTATAATAAGAACATATAACATATAATAAAAAATATAT
TTGGTTAAAAAAAATGTTATTTATAATTGTGAATTTTGTTTTAATAAATTGAACC
Found at i:11495420 original size:15 final size:17
Alignment explanation
Indices: 11495402--11495435 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11495392 AATAAAATTC
11495402 AAAA-TTATAATAAGAA
1 AAAAGTTATAATAAGAA
11495418 AAAATGTTATAATAAGAA
1 AAAA-GTTATAATAAGAA
11495436 CATCTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAAGTTATAATAAGAA
Found at i:11495563 original size:21 final size:21
Alignment explanation
Indices: 11495521--11495569 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
11495511 AACCTAAAAG
** *
11495521 TTTTTATATATTATTAATATA
1 TTTTTATATATTAAGAAAATA
*
11495542 TTTTTATATTTTAAGAAAATA
1 TTTTTATATATTAAGAAAATA
*
11495563 TTATTAT
1 TTTTTAT
11495570 TATAAATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTTATATATTAAGAAAATA
Found at i:11495724 original size:23 final size:23
Alignment explanation
Indices: 11495694--11495740 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
11495684 CCATTTTTCA
11495694 AACTAATGAACCTGAATTAAATT
1 AACTAATGAACCTGAATTAAATT
11495717 AACTAATGAACCTGAATTAAATT
1 AACTAATGAACCTGAATTAAATT
11495740 A
1 A
11495741 TACTTAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.30
Consensus pattern (23 bp):
AACTAATGAACCTGAATTAAATT
Found at i:11500364 original size:20 final size:22
Alignment explanation
Indices: 11500339--11500379 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
11500329 ACAAAAAAAT
11500339 AAAAATTTTC-CC-CTTTTTTG
1 AAAAATTTTCTCCTCTTTTTTG
11500359 AAAAATTTTCTCCTCTTTTTT
1 AAAAATTTTCTCCTCTTTTTT
11500380 TATTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.24, C:0.20, G:0.02, T:0.54
Consensus pattern (22 bp):
AAAAATTTTCTCCTCTTTTTTG
Found at i:11504979 original size:23 final size:23
Alignment explanation
Indices: 11504916--11504979 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 23
11504906 AAAGGAATTT
* * *
11504916 AAGAAAGCTTAAATTGAATTAAA
1 AAGAAAACTAAAACTGAATTAAA
* * *
11504939 AACAAAA-TAGAACTTGAATTTAA
1 AAGAAAACTAAAAC-TGAATTAAA
11504962 AAGAAAACTAAAACTGAA
1 AAGAAAACTAAAACTGAA
11504980 CTTTGTGTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
22 3 0.10
23 23 0.74
24 5 0.16
ACGTcount: A:0.59, C:0.08, G:0.11, T:0.22
Consensus pattern (23 bp):
AAGAAAACTAAAACTGAATTAAA
Found at i:11506083 original size:20 final size:20
Alignment explanation
Indices: 11506029--11506086 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
11506019 TCTAATGTAC
*
11506029 CAAGAATCATTCAAGATTGAT
1 CAAGATTCA-TCAAGATTGAT
*
11506050 CAAGAACTTC--CAAGATTGTT
1 CAAG-A-TTCATCAAGATTGAT
11506070 CAAGATTCATCAAGATT
1 CAAGATTCATCAAGATT
11506087 CAATCTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.10
19 1 0.03
20 20 0.65
21 4 0.13
22 1 0.03
23 2 0.06
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (20 bp):
CAAGATTCATCAAGATTGAT
Found at i:11506640 original size:17 final size:17
Alignment explanation
Indices: 11506620--11506677 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
11506610 AAAGTTTTGT
*
11506620 TGAAACCAGAATAGTTA
1 TGAAACCAAAATAGTTA
11506637 TGAAACCAAAATAG-TA
1 TGAAACCAAAATAGTTA
* * *
11506653 TTGAAATCATAATAGTCA
1 -TGAAACCAAAATAGTTA
11506671 TGAAACC
1 TGAAACC
11506678 TTCTATCTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
16 2 0.06
17 31 0.91
18 1 0.03
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (17 bp):
TGAAACCAAAATAGTTA
Found at i:11508176 original size:2 final size:2
Alignment explanation
Indices: 11508169--11508196 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11508159 TTGCACCATG
11508169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11508197 TAACAACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11509344 original size:416 final size:418
Alignment explanation
Indices: 11508298--11509385 Score: 1200
Period size: 416 Copynumber: 2.6 Consensus size: 418
11508288 TAAACATCAA
* * * *
11508298 AACAATTAGTAGATCATAAATCATCTCTATGCACATTCATTCTAAATAATATTTAATTACATGAT
1 AACAATTA-TAGATCATCAATCATCTATATGCACATTCATTCTAAAAAATAATTAATTACATGAT
* * *
11508363 GATCATAGTGCTGCTAATAGATAA-AGGTCCTAAGCCATTAAAGGA-CTAATACAAAAGGACTTA
65 GATCAGAG-CCTGCTAATAGATAAGA-GTCCTAAGCCATTAAAGGAGC-AATACAAAAAGACTTA
* * *
11508426 AAAA-ATAATGATCACAGTGCAACTAATA-ACTAAGAGTCCTAAGCCATTAAAGGAGTATATTAG
127 AAAACATAATGATCACAATGCAACTAATAGA-TAAGAGTCCTAAGCCATTAAAGGAGCATATTCG
* * * * *
11508489 CCGAATGGACAAAATCGCAT--G----AGTTAAAGCAATCCAGTTAAAATTTTC--ACGTCATTA
191 CTGAATGAACAAAATAGCATGAGTTAAAGTTAAAGCAATCCAGTTAAGATTTTCATATGTCATTA
* * *
11508546 CAATGGATGGATGATAATACAAGGAACCGCAAGTGTACAAGTCGTATAAGTAATAAAATGGAAGA
256 C-A--GATGGATGATAATACAAGAAACCGCAAATGTACAAGTCGTACAAGTAATAAAATGGAAGA
* * * *
11508611 ATTAACTCTAAGTATCATCTTTCAAAGATTACCGTGGTGGCCTAATGTTAAGTACTAAAATTGAA
318 ATGAACTCTAAGTATCATCTTTCAAAGATTACCGTAGTGG-CTAATGCTAAATACTAAAATTGAA
* *
11508676 CATTCTAAGTATATTCAAATCTATCAAAAGCTTAATT
382 CATCCTAAGTATATTCAAATCTATCAAAAGCTCAATT
* * * *
11508713 AACAATTAATAGATCATCAATCATCTATATGCACATTCATTTTGAAAAATACTTCATTACATGAT
1 AACAATT-ATAGATCATCAATCATCTATATGCACATTCATTCTAAAAAATAATTAATTACATGAT
* * *
11508778 TATCAGAATGCC-ACTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCTATACAAAAAGACTTAA
65 GATCAG-A-GCCTGCTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCAATACAAAAAGACTTAA
* *
11508842 AAACATAATGATCCCATAT-CAACTAATAGATAAGAGTCCTAAGCCATTAAAGGATCATA-TCAG
128 AAACATAATGATCACA-ATGCAACTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCATATTC-G
* * * * *
11508905 CTGAATAAAAAAAATAGCATGAGTTAAAGTTAAAGCAATTCTA-TTAAGCTTTTCATATGCCATT
191 CTGAATGAACAAAATAGCATGAGTTAAAGTTAAAGCAA-TCCAGTTAAGATTTTCATATGTCATT
* * * * * * *
11508969 AC-GATGGATGATAATATAAGAAACTGCAAATGTTCAAGTTGTACAGGTAATAGAGT-GAAGTAA
255 ACAGATGGATGATAATACAAGAAACCGCAAATGTACAAGTCGTACAAGTAATAAAATGGAAG-AA
** * * * *
11509032 TGAA-TCTCAAGTATTGTCTCTT-GAGGATTA-CGATAGTGG-TATTGCTAAATA-TTAAATT-A
319 TGAACTCT-AAGTATCATCT-TTCAAAGATTACCG-TAGTGGCTAATGCTAAATACTAAAATTGA
* **
11509091 AGTATCCTAAGTATATTCTGATCTATCAAAAGCTCAATT
381 A-CATCCTAAGTATATTCAAATCTATCAAAAGCTCAATT
* * *
11509130 AACAATTATAGATTATCAATCATCTGTATGCACATTCATTCTAAAAAATAATTAATTACATGCTG
1 AACAATTATAGATCATCAATCATCTATATGCACATTCATTCTAAAAAATAATTAATTACATGATG
*
11509195 ATTAGAGCACTGCTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCAATACAAAAAGACTTAAAA
66 ATCAGAGC-CTGCTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCAATACAAAAAGACTTAAAA
* * * * *
11509260 ACATAATGATCACAATGCAACTCATAGATAAGAGCCCTAAGTCATTAAATGAGCATATTCG-TTA
130 ACATAATGATCACAATGCAACTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCATATTCGCTGA
* * * *
11509324 AGTGCACAAAATAACATGAGTTAAAGTTAAACCAATCCAGTCAAGATTTTCATATGTCATTA
195 A-TGAACAAAATAGCATGAGTTAAAGTTAAAGCAATCCAGTTAAGATTTTCATATGTCATTA
11509386 AAAAACTACA
Statistics
Matches: 564, Mismatches: 80, Indels: 57
0.80 0.11 0.08
Matches are distributed among these distances:
414 2 0.00
415 119 0.21
416 272 0.48
417 50 0.09
418 10 0.02
419 9 0.02
420 69 0.12
421 2 0.00
422 20 0.04
423 3 0.01
424 8 0.01
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (418 bp):
AACAATTATAGATCATCAATCATCTATATGCACATTCATTCTAAAAAATAATTAATTACATGATG
ATCAGAGCCTGCTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCAATACAAAAAGACTTAAAAA
CATAATGATCACAATGCAACTAATAGATAAGAGTCCTAAGCCATTAAAGGAGCATATTCGCTGAA
TGAACAAAATAGCATGAGTTAAAGTTAAAGCAATCCAGTTAAGATTTTCATATGTCATTACAGAT
GGATGATAATACAAGAAACCGCAAATGTACAAGTCGTACAAGTAATAAAATGGAAGAATGAACTC
TAAGTATCATCTTTCAAAGATTACCGTAGTGGCTAATGCTAAATACTAAAATTGAACATCCTAAG
TATATTCAAATCTATCAAAAGCTCAATT
Found at i:11515738 original size:19 final size:19
Alignment explanation
Indices: 11515714--11515750 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
11515704 GTTGCCAAAA
11515714 ACTTCATCAAAAAATTCAT
1 ACTTCATCAAAAAATTCAT
*
11515733 ACTTCATCGAAAAATTCA
1 ACTTCATCAAAAAATTCA
11515751 ACCAAACCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.30
Consensus pattern (19 bp):
ACTTCATCAAAAAATTCAT
Found at i:11515784 original size:11 final size:11
Alignment explanation
Indices: 11515770--11515811 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
11515760 AGAAAAATCC
11515770 AAAAAAATTCT
1 AAAAAAATTCT
*
11515781 -AAAAAATTTT
1 AAAAAAATTCT
*
11515791 TAAAAAA-TCT
1 AAAAAAATTCT
11515801 AAAAAAATTCT
1 AAAAAAATTCT
11515812 TAAATGGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAAAAATTCT
Found at i:11515809 original size:21 final size:21
Alignment explanation
Indices: 11515771--11515815 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
11515761 GAAAAATCCA
*
11515771 AAAAAATTCTAAAAAATTTTT
1 AAAAAATTCTAAAAAATTCTT
11515792 AAAAAA-TCTAAAAAAATTCTT
1 AAAAAATTCT-AAAAAATTCTT
11515813 AAA
1 AAA
11515816 TGGTTCTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAAATTCTAAAAAATTCTT
Found at i:11516379 original size:3 final size:3
Alignment explanation
Indices: 11516366--11516436 Score: 133
Period size: 3 Copynumber: 23.7 Consensus size: 3
11516356 TAAAAATATT
*
11516366 ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
11516414 ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
11516437 CACAAGCTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:11523681 original size:28 final size:28
Alignment explanation
Indices: 11523649--11523705 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
11523639 TATTTTAGAG
11523649 AAAGGTAATTTTCAATAGAATGCCTGTT
1 AAAGGTAATTTTCAATAGAATGCCTGTT
11523677 AAAGGTAATTTTCAATAGAATGCCTGTT
1 AAAGGTAATTTTCAATAGAATGCCTGTT
11523705 A
1 A
11523706 CGCCATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.35
Consensus pattern (28 bp):
AAAGGTAATTTTCAATAGAATGCCTGTT
Found at i:11529214 original size:3 final size:3
Alignment explanation
Indices: 11529206--11529251 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
11529196 AGACAAAAAT
* * * *
11529206 ATA ATA ATA ATA ATA ATA ATT ATA ATA ATT ATT ATT ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
11529252 CAATTTGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
ATA
Found at i:11529334 original size:26 final size:26
Alignment explanation
Indices: 11529279--11529340 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
11529269 CCTTGACCCA
* *
11529279 AATGGGCCTAACTAGGCCTAAACATT
1 AATGGGCCCAACTAGGCCTAAACATC
* *
11529305 AATGGGCCCAATTAGGCCTAGAC-TAC
1 AATGGGCCCAACTAGGCCTAAACAT-C
11529331 AATGGGCCCA
1 AATGGGCCCA
11529341 GATATAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.03
26 30 0.97
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (26 bp):
AATGGGCCCAACTAGGCCTAAACATC
Found at i:11531631 original size:25 final size:25
Alignment explanation
Indices: 11531593--11531641 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
11531583 AAGTGAAGTG
*
11531593 CTTGTTTATTTGTTAATGGCTTTAA
1 CTTGTTTATATGTTAATGGCTTTAA
*
11531618 CTTGTTTATATGTTAATGGTTTTA
1 CTTGTTTATATGTTAATGGCTTTA
11531642 TTTTTTGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.06, G:0.16, T:0.57
Consensus pattern (25 bp):
CTTGTTTATATGTTAATGGCTTTAA
Found at i:11532863 original size:112 final size:112
Alignment explanation
Indices: 11532666--11532889 Score: 421
Period size: 112 Copynumber: 2.0 Consensus size: 112
11532656 GATGTTGTGT
*
11532666 CCAATAATTCTAAGGTTTATTTTTTATTGGTATTTCATCCTTCTATTATTATTTATTTATAATTA
1 CCAATAATTCTAAGGTTTATTTTTTATTGGTATTTCATCCTTCTATTACTATTTATTTATAATTA
11532731 GACATTTGCTGGTGTAGTTTTGGATTACAGTTCTTTATTTATATTGC
66 GACATTTGCTGGTGTAGTTTTGGATTACAGTTCTTTATTTATATTGC
11532778 CCAATAATTCTAAGGTTTATTTTTTATTGGTATTTCATCCTTCTATTACTATTTATTTATAATTA
1 CCAATAATTCTAAGGTTTATTTTTTATTGGTATTTCATCCTTCTATTACTATTTATTTATAATTA
* *
11532843 GACATTTGTTGGTGTAGTTTTGGATTATAGTTCTTTATTTATATTGC
66 GACATTTGCTGGTGTAGTTTTGGATTACAGTTCTTTATTTATATTGC
11532890 TTTTTGTGTT
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 109 1.00
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.53
Consensus pattern (112 bp):
CCAATAATTCTAAGGTTTATTTTTTATTGGTATTTCATCCTTCTATTACTATTTATTTATAATTA
GACATTTGCTGGTGTAGTTTTGGATTACAGTTCTTTATTTATATTGC
Found at i:11546223 original size:21 final size:21
Alignment explanation
Indices: 11546198--11546249 Score: 95
Period size: 21 Copynumber: 2.4 Consensus size: 21
11546188 CTTAAAATTA
11546198 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
11546219 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
11546240 ATAAATATAT
1 ATAAA-ATAT
11546250 AAATATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:11546252 original size:14 final size:14
Alignment explanation
Indices: 11546235--11546278 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
11546225 TATTATTTTT
*
11546235 TAAATATAAATATA
1 TAAATATAAATAAA
*
11546249 TAAATATATATAAA
1 TAAATATAAATAAA
11546263 TAAAT-TAAATAAA
1 TAAATATAAATAAA
11546276 TAA
1 TAA
11546279 TTTTTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TAAATATAAATAAA
Found at i:11548046 original size:9 final size:8
Alignment explanation
Indices: 11548010--11548053 Score: 61
Period size: 8 Copynumber: 5.2 Consensus size: 8
11548000 CCAATTCCGG
11548010 TTAATTTT
1 TTAATTTT
11548018 TTAATTTT
1 TTAATTTT
*
11548026 TTAAGTTT
1 TTAATTTT
11548034 TTAATTTT
1 TTAATTTT
11548042 ATTAATTATT
1 -TTAATT-TT
11548052 TT
1 TT
11548054 TGCTTTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
8 22 0.69
9 8 0.25
10 2 0.06
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (8 bp):
TTAATTTT
Found at i:11548677 original size:17 final size:18
Alignment explanation
Indices: 11548655--11548696 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
11548645 TGACACAAAT
11548655 ATGACAAAAAT-ATTTAA
1 ATGACAAAAATAATTTAA
*
11548672 ATGACACAAATAATTTAA
1 ATGACAAAAATAATTTAA
11548690 AT-ACAAA
1 ATGACAAA
11548697 TATGTCTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.60, C:0.10, G:0.05, T:0.26
Consensus pattern (18 bp):
ATGACAAAAATAATTTAA
Found at i:11550110 original size:14 final size:15
Alignment explanation
Indices: 11550093--11550125 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11550083 ATTTATTTTC
*
11550093 AAAAATTTC-TTATA
1 AAAAATTACATTATA
11550107 AAAAATTACATTATA
1 AAAAATTACATTATA
11550122 AAAA
1 AAAA
11550126 TACAAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAAATTACATTATA
Found at i:11550443 original size:19 final size:19
Alignment explanation
Indices: 11550419--11550465 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
11550409 CCAAAATCGA
11550419 TTTTTCTTAT-TCATCTTCT
1 TTTTTCTT-TGTCATCTTCT
* *
11550438 TTTTTCTTTGTCCTTTTCT
1 TTTTTCTTTGTCATCTTCT
11550457 TTTTTCTTT
1 TTTTTCTTT
11550466 CTTTTCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 24 0.96
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTTTCTTTGTCATCTTCT
Found at i:11550473 original size:22 final size:22
Alignment explanation
Indices: 11550432--11550476 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
11550422 TTCTTATTCA
11550432 TCTTCTTTTTTCTTTGTCCTTT
1 TCTTCTTTTTTCTTTGTCCTTT
*
11550454 TCTTTTTTCTTTCTTT-TCCTTT
1 TCTTCTTT-TTTCTTTGTCCTTT
11550476 T
1 T
11550477 AAATGAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (22 bp):
TCTTCTTTTTTCTTTGTCCTTT
Found at i:11556264 original size:31 final size:31
Alignment explanation
Indices: 11556199--11556264 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
11556189 ACAAGTAAGA
* *
11556199 AAAACTAAAATACAAAATATAAAAATTATTT
1 AAAACCAAAATACAAAATATAAAAATTATCT
*
11556230 AAAACCAAAATATCAAAAT-TACAAATCTA-CT
1 AAAACCAAAATA-CAAAATATAAAAAT-TATCT
11556261 AAAA
1 AAAA
11556265 AAAAGTAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
31 22 0.73
32 8 0.27
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (31 bp):
AAAACCAAAATACAAAATATAAAAATTATCT
Found at i:11558235 original size:23 final size:23
Alignment explanation
Indices: 11558199--11558242 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
11558189 GCCATTTACT
11558199 CAAATTGCACAAAAAA-ATCCTC
1 CAAATTGCACAAAAAATATCCTC
*
11558221 CAAATTTGCATAAAAAATATCC
1 CAAA-TTGCACAAAAAATATCC
11558243 AAAATTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.23
Consensus pattern (23 bp):
CAAATTGCACAAAAAATATCCTC
Found at i:11558963 original size:7 final size:7
Alignment explanation
Indices: 11558951--11558991 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
11558941 ATTATTTTTG
11558951 TTCTTTC
1 TTCTTTC
11558958 TTCTTTC
1 TTCTTTC
11558965 TTCTTTC
1 TTCTTTC
*
11558972 TTCTCTC
1 TTCTTTC
11558979 TT-TTT-
1 TTCTTTC
11558984 TT-TTTC
1 TTCTTTC
11558990 TT
1 TT
11558992 TTTTATGACT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
5 5 0.16
6 4 0.13
7 22 0.71
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (7 bp):
TTCTTTC
Found at i:11563210 original size:12 final size:12
Alignment explanation
Indices: 11563177--11563212 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
11563167 AAGTATATAC
11563177 ACTTAAAAGTAT
1 ACTTAAAAGTAT
**
11563189 ACTTTTAAGTAT
1 ACTTAAAAGTAT
11563201 ACTTAAAAGTAT
1 ACTTAAAAGTAT
11563213 GAAATAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (12 bp):
ACTTAAAAGTAT
Found at i:11564304 original size:48 final size:43
Alignment explanation
Indices: 11564199--11564306 Score: 110
Period size: 45 Copynumber: 2.3 Consensus size: 43
11564189 TCATTAAATG
11564199 AAAAACCAAATAAAAAAAAATAATAATAATAATATAAAAAAACTA
1 AAAAACC--ATAAAAAAAAATAATAATAATAATATAAAAAAACTA
** *
11564244 AAAAACTTTAAAAATTAAATAATAATAAATAA-ATAAATAAAAACTAA
1 AAAAACCATAAAAA-AAAATAATAAT-AATAATAT-AA-AAAAACT-A
11564291 AAATAACCATAAAAAA
1 AAA-AACCATAAAAAA
11564307 TGAAAAAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
43 6 0.12
44 12 0.24
45 13 0.25
46 7 0.14
47 4 0.08
48 9 0.18
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.20
Consensus pattern (43 bp):
AAAAACCATAAAAAAAAATAATAATAATAATATAAAAAAACTA
Found at i:11564988 original size:21 final size:22
Alignment explanation
Indices: 11564964--11565009 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
11564954 AATAAAACTA
11564964 AACAGG-AAACAAAAAAAAAAG
1 AACAGGTAAACAAAAAAAAAAG
11564985 AACAGGTATAAACAAAAAAAAAAG
1 AACAGG--TAAACAAAAAAAAAAG
11565009 A
1 A
11565010 GAAGAGCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.27
24 16 0.73
ACGTcount: A:0.74, C:0.09, G:0.13, T:0.04
Consensus pattern (22 bp):
AACAGGTAAACAAAAAAAAAAG
Found at i:11566404 original size:14 final size:15
Alignment explanation
Indices: 11566385--11566429 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
11566375 GAGAAATTAT
11566385 TAAATAAAAATAAAA
1 TAAATAAAAATAAAA
11566400 T-AATAAAAGAT-AAA
1 TAAATAAAA-ATAAAA
*
11566414 TAAATAATAATAAAA
1 TAAATAAAAATAAAA
11566429 T
1 T
11566430 TTTAATGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
TAAATAAAAATAAAA
Found at i:11566412 original size:21 final size:21
Alignment explanation
Indices: 11566388--11566428 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11566378 AAATTATTAA
11566388 ATAAA-AATAAAATAATAAAAG
1 ATAAATAA-AAAATAATAAAAG
*
11566409 ATAAATAAATAATAATAAAA
1 ATAAATAAAAAATAATAAAA
11566429 TTTTAATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (21 bp):
ATAAATAAAAAATAATAAAAG
Found at i:11570031 original size:3 final size:3
Alignment explanation
Indices: 11570011--11570063 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
11570001 ATACAAGTAA
* *
11570011 AAT AAA AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11570059 AAT AA
1 AAT AA
11570064 CATGTGTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:11577467 original size:9 final size:8
Alignment explanation
Indices: 11577448--11577539 Score: 60
Period size: 9 Copynumber: 10.9 Consensus size: 8
11577438 TATTTCTCTT
11577448 AAAGAAAA
1 AAAGAAAA
11577456 AAAGATAAA
1 AAAGA-AAA
11577465 AAA-AATGAA
1 AAAGAA--AA
*
11577474 AATGAAATA
1 AAAGAAA-A
*
11577483 AATGAAAA
1 AAAGAAAA
11577491 AAGAGAAAA
1 AA-AGAAAA
*
11577500 AATGAAATA
1 AAAGAAA-A
* *
11577509 AATGAAAT
1 AAAGAAAA
*
11577517 AAACAAAA
1 AAAGAAAA
*
11577525 AAATAAAA
1 AAAGAAAA
11577533 AAAGAAA
1 AAAGAAA
11577540 GATGATTCAA
Statistics
Matches: 68, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
7 1 0.01
8 32 0.47
9 33 0.49
10 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAGAAAA
Found at i:11577491 original size:26 final size:26
Alignment explanation
Indices: 11577472--11577528 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
11577462 AAAAAAAATG
11577472 AAAATGAAATAAATGAAAAAAGAGAA
1 AAAATGAAATAAATGAAAAAAGAGAA
*
11577498 AAAATGAAATAAATGAAATAAACA-AA
1 AAAATGAAATAAATGAAA-AAAGAGAA
11577524 AAAAT
1 AAAAT
11577529 AAAAAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.14
Consensus pattern (26 bp):
AAAATGAAATAAATGAAAAAAGAGAA
Found at i:11577501 original size:35 final size:31
Alignment explanation
Indices: 11577447--11577535 Score: 97
Period size: 35 Copynumber: 2.6 Consensus size: 31
11577437 ATATTTCTCT
11577447 TAAAGAAAAAAAGATAAAAAAAATGAAAATGAAA
1 TAAAGAAAAAAAGA-AAAAAAAAT--AAATGAAA
11577481 TAAATGAAAAAAGAGAAAAAATGAAATAAATGAAA
1 TAAA-GAAAAAA-AGAAAAAA--AAATAAATGAAA
* *
11577516 TAAACAAAAAAATAAAAAAA
1 TAAAGAAAAAAAGAAAAAAA
11577536 GAAAGATGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
31 1 0.02
33 7 0.14
34 10 0.20
35 24 0.49
36 3 0.06
37 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.10, T:0.12
Consensus pattern (31 bp):
TAAAGAAAAAAAGAAAAAAAAATAAATGAAA
Found at i:11578691 original size:35 final size:34
Alignment explanation
Indices: 11578654--11578843 Score: 87
Period size: 35 Copynumber: 5.3 Consensus size: 34
11578644 ATTGTTTCTC
11578654 AACTTACGACTTAGTCCCAATCATCTTTATTTTT
1 AACTTACGACTTAGTCCCAATCATCTTTATTTTT
* ** *
11578688 CAACTTA-TAGCCCAGTCCCAAT-TTACTTTATTTTT
1 -AACTTACGA-CTTAGTCCCAATCAT-CTTTATTTTT
* * * *
11578723 AGAATTACGATTTAATGCCAATCTTCATTCTTTATTTCTT
1 A-ACTTACGACTTAGTCCCAA---TCA-TCTTTATTT-TT
* * * * * *
11578763 GACTTATGGCTTAGTCTCGATCATCATTATTTTTT
1 AACTTACGACTTAGTCCCAATCATCTTTA-TTTTT
* * * * *
11578798 GACTTGCGGCTCAGTCCCAATCATATTTATTTTTT
1 AACTTACGACTTAGTCCCAATCATCTTTA-TTTTT
*
11578833 AACTTGCGACT
1 AACTTACGACT
11578844 CAATTTCGAT
Statistics
Matches: 113, Mismatches: 31, Indels: 22
0.68 0.19 0.13
Matches are distributed among these distances:
34 3 0.03
35 80 0.71
36 7 0.06
38 1 0.01
39 19 0.17
40 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (34 bp):
AACTTACGACTTAGTCCCAATCATCTTTATTTTT
Found at i:11579322 original size:34 final size:34
Alignment explanation
Indices: 11579213--11579377 Score: 154
Period size: 34 Copynumber: 4.8 Consensus size: 34
11579203 ATGATCATTT
* * *
11579213 TTTATTTCCTGACTTGCGGCTTAATCCCAGTCATC
1 TTTATTTCTTGACTTG-TGCTTAATCTCAGTCATC
* * * * *
11579248 GTTGTTTCTCGACTTACG-GTTTAATCTCAATCAT-
1 TTTATTTCTTGACTT--GTGCTTAATCTCAGTCATC
*
11579282 TATTATTTCTTGACTTGTGCTTAGTCTCAGTCATC
1 T-TTATTTCTTGACTTGTGCTTAATCTCAGTCATC
* *
11579317 TTTATTTTTTGACTTGTGCTTAGTCTCAGTCATC
1 TTTATTTCTTGACTTGTGCTTAATCTCAGTCATC
* *
11579351 TTTATTTTTTGACTTGTGACTCAATCT
1 TTTATTTCTTGACTTGTG-CTTAATCT
11579378 TGGTCCTTGT
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
33 1 0.01
34 63 0.58
35 43 0.40
37 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.48
Consensus pattern (34 bp):
TTTATTTCTTGACTTGTGCTTAATCTCAGTCATC
Found at i:11579739 original size:35 final size:34
Alignment explanation
Indices: 11579581--11579749 Score: 108
Period size: 35 Copynumber: 4.8 Consensus size: 34
11579571 CCAGACCTAT
** **
11579581 AGTTCAATCCTGATCATTCTTTATTTCCTGACTTG
1 AGTTCAATCCCAATCA-TCTTTATTTTTTGACTTG
* * * * *
11579616 AAGTTCATTCCCAATCACCTTTATTTCTCGATTTG
1 -AGTTCAATCCCAATCATCTTTATTTTTTGACTTG
* * ** *
11579651 TGGCTCAATTTCGATCATCTTTATTTTTTGACTAATG
1 -AGTTCAATCCCAATCATCTTTATTTTTTGACT--TG
*
11579688 -GCTT-AATCCCATTCATCTTTATTTTTTGACTTG
1 AG-TTCAATCCCAATCATCTTTATTTTTTGACTTG
*
11579721 CAGTTCAATCTCAATCATCTTTTATTTTT
1 -AGTTCAATCCCAATCATC-TTTATTTTT
11579750 CAGTTCGCCT
Statistics
Matches: 101, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
33 2 0.02
34 2 0.02
35 72 0.71
36 23 0.23
37 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (34 bp):
AGTTCAATCCCAATCATCTTTATTTTTTGACTTG
Found at i:11580264 original size:15 final size:15
Alignment explanation
Indices: 11580235--11580276 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
11580225 CCAAAAATTT
11580235 ATAAATTAAAT-AATA
1 ATAAA-TAAATAAATA
11580250 ATAAATAAATAAATA
1 ATAAATAAATAAATA
* *
11580265 ACAAAAAAATAA
1 ATAAATAAATAA
11580277 CCATAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (15 bp):
ATAAATAAATAAATA
Found at i:11583118 original size:15 final size:17
Alignment explanation
Indices: 11583098--11583134 Score: 51
Period size: 15 Copynumber: 2.2 Consensus size: 17
11583088 CAACATTTCT
11583098 AAATAAA-TATTT-TTA
1 AAATAAATTATTTCTTA
11583113 AAATAAATTTATTTCTTA
1 AAATAAA-TTATTTCTTA
11583131 AAAT
1 AAAT
11583135 GAAGGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
17 5 0.26
18 7 0.37
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATAAATTATTTCTTA
Found at i:11584573 original size:60 final size:62
Alignment explanation
Indices: 11584422--11584573 Score: 148
Period size: 60 Copynumber: 2.5 Consensus size: 62
11584412 GTATTTTTGG
* **
11584422 CTAGAAACACCTTGAATAACCTCCATTA-AATCTTTTGTAAGGGATTATTCAAGGTGTTTTTAA
1 CTAGAAACACCTTGAATAA--TCCATTACAATCTTTTGTAAGGGATTATGCAAGGCATTTTTAA
* * * ** *** *
11584485 CTAAAAACACCTTCAATAGTCCCCTACAAT-TTTT-TTTTGGATTATGCAAGGCATTTTTAC
1 CTAGAAACACCTTGAATAATCCATTACAATCTTTTGTAAGGGATTATGCAAGGCATTTTTAA
*
11584545 CTAGAAACACCTTGAATAATCCTTTACAA
1 CTAGAAACACCTTGAATAATCCATTACAA
11584574 AAAATTTAAT
Statistics
Matches: 71, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
60 43 0.61
61 9 0.13
62 3 0.04
63 16 0.23
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (62 bp):
CTAGAAACACCTTGAATAATCCATTACAATCTTTTGTAAGGGATTATGCAAGGCATTTTTAA
Found at i:11584805 original size:192 final size:190
Alignment explanation
Indices: 11584464--11584945 Score: 489
Period size: 191 Copynumber: 2.6 Consensus size: 190
11584454 TTTTGTAAGG
* * * ** * * *
11584464 GATTATTCAAGGTGTTTTTAACTAAAAACACCTTCAATAGTCCC-CTACAATTTT--TTTTTGG-
1 GATTATTCAAGGTGTTTTTAGCTAAAAACACCTTGAATAATCCCAAAAAAATTTTGGTATTGGGC
* * * * * * *
11584525 ATTATGCAAGGCA-TTTTTACCTAGAAACACCTTGAATAATCCTTTACAAAAAATTTAATGCAAG
66 ATTATTCAAGACATTTTTTCCCAAAAAACGCCTTGAATAATCCCTTACAAAAAATTTAATGCAAG
* * * * *
11584589 TTATTCAAGGCATTTTCGACCAAAAATACCTTCAATAATCCTCTTATATTTTTTATGAGGT
131 TTATTCAAAGCATTTTCAACCAAAAACACCTTCAATAATCCCCTT-TAATTTTTATGAGGT
* * * *
11584650 GGTTATTCTAA-GTGTTTTTAGCTAAAAACATCTTGAATAATCCCTTACAAAAATTTT-TTATTG
1 GATTATTC-AAGGTGTTTTTAGCTAAAAACACCTTGAATAATCCC--AAAAAAATTTTGGTATTG
* * *
11584713 GGGATTATTTAAGAC-TTTTTTGCCCATAAAACGCCTTGAATAATCCCTTACAAAAAAATTTAAT
63 GGCATTATTCAAGACATTTTTT-CCCAAAAAACGCCTTGAATAATCCCTTAC-AAAAAATTTAAT
** * * *
11584777 G-GGGTTATTGAAAGC-GTTTCTAACCAAAAACACCTTTAATAATCCCCTTTAATTTTTATGAGG
126 GCAAGTTATTCAAAGCATTTTC-AACCAAAAACACCTTCAATAATCCCCTTTAATTTTTATGAGG
11584840 T
190 T
* ** *
11584841 GATTATTCAAGGTGTTTTTGGCTGGAAACCCCTTGAATAATCCCAAAAAAATTTTGGTATTGGGC
1 GATTATTCAAGGTGTTTTTAGCTAAAAACACCTTGAATAATCCCAAAAAAATTTTGGTATTGGGC
* *
11584906 ATTATTCAAGACATTTTTTCCTAAAAAATGCCTTGAATAA
66 ATTATTCAAGACATTTTTTCCCAAAAAACGCCTTGAATAA
11584946 AAAACACATT
Statistics
Matches: 242, Mismatches: 41, Indels: 22
0.79 0.13 0.07
Matches are distributed among these distances:
186 36 0.15
187 2 0.01
189 18 0.07
190 43 0.18
191 73 0.30
192 57 0.24
193 13 0.05
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (190 bp):
GATTATTCAAGGTGTTTTTAGCTAAAAACACCTTGAATAATCCCAAAAAAATTTTGGTATTGGGC
ATTATTCAAGACATTTTTTCCCAAAAAACGCCTTGAATAATCCCTTACAAAAAATTTAATGCAAG
TTATTCAAAGCATTTTCAACCAAAAACACCTTCAATAATCCCCTTTAATTTTTATGAGGT
Found at i:11585023 original size:82 final size:81
Alignment explanation
Indices: 11584873--11585027 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
11584863 TGGAAACCCC
* * **
11584873 TTGAATAATCCCAAAAAAATTTTGGTATTGGGCATTATTCAAGACATTTTTTCCTAAAAAATGCC
1 TTGAATAATCCCAAAAAAATTTTGGTATTGGCCATTATTCAAGACATTTTTTCCCAAAAAATAAC
11584938 TTGAATAAAAAACACA
66 TTGAATAAAAAACACA
* * ***
11584954 TTGAATAATCCCTAAAAAATTTTTGTATTGGCCATTATTCAAGGTGTTTTTTTCCCAAAAAATAA
1 TTGAATAATCCCAAAAAAATTTTGGTATTGGCCATTATTCAA-GACATTTTTTCCCAAAAAATAA
11585019 CTTGAATAA
65 CTTGAATAA
11585028 TCTCTTAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
81 39 0.61
82 25 0.39
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.35
Consensus pattern (81 bp):
TTGAATAATCCCAAAAAAATTTTGGTATTGGCCATTATTCAAGACATTTTTTCCCAAAAAATAAC
TTGAATAAAAAACACA
Found at i:11585208 original size:63 final size:62
Alignment explanation
Indices: 11584954--11585224 Score: 197
Period size: 62 Copynumber: 4.3 Consensus size: 62
11584944 AAAAAACACA
* * ** ** * * **
11584954 TTGAATAATCCCTAAAAAATTTTTGTATTGGCCATTATTCAAGGTGTTTTTTTCCCAAAAAATAA
1 TTGAATAATCCCTTACAAA-TTTT-TATTGGGGATTATTCAA-G-GCATTTTTGCCTAAAAATGC
11585019 C
62 C
* * * * * * * *
11585020 TTGAATAATCTCTTAAAAATTTTGAATGGGG-TTATTCAAGGCACTTTTGGCTAAATATGCT
1 TTGAATAATCCCTTACAAATTTTTATTGGGGATTATTCAAGGCATTTTTGCCTAAAAATGCC
* * * * * *
11585081 TTCAATAATCTCTTTC-AATTTTTATTAAGGGATTATTCAATGCATTTTTGGAC-AAAAATGCC
1 TTGAATAATCCCTTACAAATTTTTATT-GGGGATTATTCAAGGCATTTTT-GCCTAAAAATGCC
* * **
11585143 TTGAATAATCCCCTCCAAATTTTTATTGGGGATTATTCAAGGTGTTTTTGCCTAGAAAATGCC
1 TTGAATAATCCCTTACAAATTTTTATTGGGGATTATTCAAGGCATTTTTGCCTA-AAAATGCC
*
11585206 TTGAATAATCCCTAACAAA
1 TTGAATAATCCCTTACAAA
11585225 AATTGAATAG
Statistics
Matches: 160, Mismatches: 39, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
60 8 0.05
61 29 0.18
62 54 0.34
63 44 0.28
64 4 0.03
65 4 0.03
66 17 0.11
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (62 bp):
TTGAATAATCCCTTACAAATTTTTATTGGGGATTATTCAAGGCATTTTTGCCTAAAAATGCC
Found at i:11589092 original size:7 final size:7
Alignment explanation
Indices: 11589080--11589136 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
11589070 GCCCATTTTA
11589080 TTTTATT
1 TTTTATT
11589087 TTTTATT
1 TTTTATT
*
11589094 TTGTATT
1 TTTTATT
*
11589101 TTGTATT
1 TTTTATT
* *
11589108 TTTTGTA
1 TTTTATT
*
11589115 TCTTATT
1 TTTTATT
11589122 TATTTATT
1 T-TTTATT
*
11589130 ATTTATT
1 TTTTATT
11589137 GCTATTATTA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 35 0.88
8 5 0.12
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (7 bp):
TTTTATT
Found at i:11589154 original size:23 final size:21
Alignment explanation
Indices: 11589117--11589261 Score: 62
Period size: 19 Copynumber: 7.0 Consensus size: 21
11589107 TTTTTGTATC
11589117 TTATT-TAT-TTATTATTTA-
1 TTATTATATATTATTATTTAT
**
11589135 TTGCTAT-TATTATTATTTA-
1 TTATTATATATTATTATTTAT
*
11589154 TTAATATATATTATTATTTAT
1 TTATTATATATTATTATTTAT
* *
11589175 CTATTAATGTATATAAATT-TTTA-
1 TTATT-A--TATAT-TATTATTTAT
11589198 TTATTAACTATCATCTATTATTTAT
1 TTATT-A-TAT-AT-TATTATTTAT
* *
11589223 CTATTA-ATA-TATT-TGT-T
1 TTATTATATATTATTATTTAT
11589240 TTATTGATATATT-TTATTTAT
1 TTATT-ATATATTATTATTTAT
11589261 T
1 T
11589262 ATTTATCTAT
Statistics
Matches: 96, Mismatches: 15, Indels: 29
0.69 0.11 0.21
Matches are distributed among these distances:
17 5 0.05
18 7 0.07
19 25 0.26
20 15 0.16
21 6 0.06
22 6 0.06
23 11 0.11
24 14 0.15
25 7 0.07
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (21 bp):
TTATTATATATTATTATTTAT
Found at i:11589180 original size:34 final size:34
Alignment explanation
Indices: 11589142--11589262 Score: 82
Period size: 34 Copynumber: 3.4 Consensus size: 34
11589132 TTATTGCTAT
*
11589142 TATTATTATTTATTAATATATATTATTATTTATC
1 TATTATTATTTATTAATATATATTATTATTCATC
* * * * * *
11589176 TATTAATGTATATAAATTTTTATTATTAACTATCATC
1 TATTATTATTTATTAATATATATTATT-A-T-TCATC
* * * * *
11589213 TATTATTTATCTATTAATATATTTGTTTTATTGATA
1 TATTA-TTATTTATTAATATATAT-TATTATTCATC
11589249 TATT-TTATTTATTA
1 TATTATTATTTATTA
11589263 TTTATCTATT
Statistics
Matches: 64, Mismatches: 18, Indels: 10
0.70 0.20 0.11
Matches are distributed among these distances:
34 30 0.47
35 1 0.02
36 8 0.12
37 10 0.16
38 12 0.19
39 3 0.05
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (34 bp):
TATTATTATTTATTAATATATATTATTATTCATC
Found at i:11589259 original size:17 final size:17
Alignment explanation
Indices: 11589218--11589262 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
11589208 TCATCTATTA
*
11589218 TTTATCTATTAATATAT
1 TTTATTTATTAATATAT
*
11589235 TTGT-TTTATTGATATAT
1 TT-TATTTATTAATATAT
11589252 TTTATTTATTA
1 TTTATTTATTA
11589263 TTTATCTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTATTTATTAATATAT
Found at i:11590039 original size:22 final size:22
Alignment explanation
Indices: 11590014--11590063 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
11590004 AGGTTTTTTC
*
11590014 ATTATTTTTATT-TTTATTTTAT
1 ATTATTATTATTATTTA-TTTAT
11590036 ATTATTATTATTATTTATTTAT
1 ATTATTATTATTATTTATTTAT
11590058 -TTATTA
1 ATTATTA
11590064 GATTAGATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 6 0.23
22 16 0.62
23 4 0.15
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
ATTATTATTATTATTTATTTAT
Found at i:11590119 original size:16 final size:16
Alignment explanation
Indices: 11590094--11590129 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
11590084 GTATTCCTTA
*
11590094 TTTTATTTTTTAATTT
1 TTTTAATTTTTAATTT
11590110 TTTTAATTTTTAATTT
1 TTTTAATTTTTAATTT
11590126 TTTT
1 TTTT
11590130 TTTAAGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTAATTTTTAATTT
Found at i:11590324 original size:54 final size:55
Alignment explanation
Indices: 11590266--11590422 Score: 203
Period size: 55 Copynumber: 2.9 Consensus size: 55
11590256 CAATCTTGAA
*
11590266 AAAATTTTCAAATGCTTTAAGGAAAAGTTAAAAGTATCAATTTTTCTTA-AAAAT
1 AAAATTTTCAAATGCTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAAAT
* * * * *
11590320 AAAATTTTCAAAAAT-ATTTTAGGGAAAGTTGAAATTATCAATTTCTC-TAGAAAAT
1 AAAATTTTC--AAATGCTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAAAT
* *
11590375 AAAATTTCCAAATGCTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTT
1 AAAATTTTCAAATGCTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT
11590423 GTATGAAAGC
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
53 4 0.05
54 37 0.44
55 40 0.47
56 4 0.05
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (55 bp):
AAAATTTTCAAATGCTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAAAT
Done.