Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 63 of 130
Found at i:13309126 original size:19 final size:19
Alignment explanation
Indices: 13309104--13309235 Score: 70
Period size: 19 Copynumber: 6.8 Consensus size: 19
13309094 TTTTTAAAGA
13309104 TTAAAAAATTCTAAAAATT
1 TTAAAAAATTCTAAAAATT
* *
13309123 TTAAATAATTCTTAAAATAT
1 TTAAAAAATTCTAAAAAT-T
* * *
13309143 TAAAAAAATTTTAAAACTT
1 TTAAAAAATTCTAAAAATT
** **
13309162 TTTTAAAATT-TAAAAAAG
1 TTAAAAAATTCTAAAAATT
* ** *
13309180 TAAAAAAAGTGTAAAAAAATA
1 TTAAAAAA-T-TCTAAAAATT
**
13309201 TTAAAAATATTAAAAAAAATT
1 TTAAAAA-ATT-CTAAAAATT
13309222 TT-AAAAATTCTAAA
1 TTAAAAAATTCTAAA
13309236 CTTTTTTTAA
Statistics
Matches: 84, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
18 13 0.15
19 28 0.33
20 20 0.24
21 22 0.26
22 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (19 bp):
TTAAAAAATTCTAAAAATT
Found at i:13309150 original size:30 final size:29
Alignment explanation
Indices: 13309116--13309178 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
13309106 AAAAAATTCT
13309116 AAAAATTTTAAATA-ATTCTTAAAATATTAA
1 AAAAATTTTAAA-ACATTCTTAAAAT-TTAA
* *
13309146 AAAAATTTTAAAACTTTTTTAAAATTTAA
1 AAAAATTTTAAAACATTCTTAAAATTTAA
13309175 AAAA
1 AAAA
13309179 GTAAAAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (29 bp):
AAAAATTTTAAAACATTCTTAAAATTTAA
Found at i:13309411 original size:10 final size:10
Alignment explanation
Indices: 13309377--13309492 Score: 55
Period size: 9 Copynumber: 11.7 Consensus size: 10
13309367 TTTCGTATTC
*
13309377 AAAATTTTTA
1 AAAAATTTTA
*
13309387 AAAAATTTCTC
1 AAAAATTT-TA
13309398 AAAAATTTT-
1 AAAAATTTTA
*
13309407 AAAAATTCTA
1 AAAAATTTTA
*
13309417 AACAAA-TCTA
1 AA-AAATTTTA
**
13309427 AAAAA-TTCC
1 AAAAATTTTA
13309436 AAAAA-TTTA
1 AAAAATTTTA
*
13309445 AGAAAA-ATTA
1 A-AAAATTTTA
*
13309455 TAAAATTTTA
1 AAAAATTTTA
*
13309465 TAAAAACTTT-
1 -AAAAATTTTA
*
13309475 CAAAATTTATA
1 AAAAATTT-TA
13309486 AAAAATT
1 AAAAATT
13309493 AAAATATGAA
Statistics
Matches: 82, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
9 30 0.37
10 27 0.33
11 25 0.30
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:13309459 original size:19 final size:19
Alignment explanation
Indices: 13309437--13309493 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
13309427 AAAAATTCCA
13309437 AAAATTTAAGAAAAATTAT-
1 AAAATTTAA-AAAAATTATC
*
13309456 AAAATTTTATAAAAACTT-TC
1 AAAA-TTTA-AAAAAATTATC
13309476 AAAATTTATAAAAAATTA
1 AAAATTTA-AAAAAATTA
13309494 AAATATGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 17 0.53
20 14 0.44
21 1 0.03
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAATTTAAAAAAATTATC
Found at i:13309459 original size:20 final size:20
Alignment explanation
Indices: 13309377--13309493 Score: 73
Period size: 20 Copynumber: 5.9 Consensus size: 20
13309367 TTTCGTATTC
* *
13309377 AAAATTTTTAAAAAATTTCTCA
1 AAAATTTATAAAAAA-TTAT-A
*
13309399 AAAATTT-T-AAAAATTCTA
1 AAAATTTATAAAAAATTATA
* * **
13309417 AACAA-ATCTAAAAAATTCCA
1 AA-AATTTATAAAAAATTATA
13309437 AAAATTTA-AGAAAAATTATA
1 AAAATTTATA-AAAAATTATA
* * *
13309457 AAATTTTATAAAAACTT-TC
1 AAAATTTATAAAAAATTATA
13309476 AAAATTTATAAAAAATTA
1 AAAATTTATAAAAAATTA
13309494 AAATATGAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
18 4 0.05
19 26 0.34
20 38 0.49
21 2 0.03
22 7 0.09
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34
Consensus pattern (20 bp):
AAAATTTATAAAAAATTATA
Found at i:13311201 original size:20 final size:21
Alignment explanation
Indices: 13311172--13311211 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
13311162 TATATATTTT
*
13311172 ATTACTAATTTTAATATCATA
1 ATTACTAATTGTAATATCATA
*
13311193 ATTAC-AATTGTAATCTCAT
1 ATTACTAATTGTAATATCAT
13311212 TACTAAGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (21 bp):
ATTACTAATTGTAATATCATA
Found at i:13312224 original size:24 final size:25
Alignment explanation
Indices: 13312187--13312247 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 25
13312177 ATAAAATTAT
** *
13312187 TTTATTTAAATTAAAATTAAATGTA
1 TTTATTTATTTTAAAATTAAATATA
*
13312212 -TTATTTATTTTAATATTAAATATA
1 TTTATTTATTTTAAAATTAAATATA
*
13312236 TTTATGTATTTT
1 TTTATTTATTTT
13312248 CGAAAACAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 20 0.67
25 10 0.33
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (25 bp):
TTTATTTATTTTAAAATTAAATATA
Found at i:13312431 original size:14 final size:14
Alignment explanation
Indices: 13312412--13312461 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
13312402 TTTTGCATTA
13312412 TCAAAAATTTATTT
1 TCAAAAATTTATTT
13312426 TCAAAAATATT-TTT
1 TCAAAAAT-TTATTT
13312440 GT-AAAAATTTATTT
1 -TCAAAAATTTATTT
*
13312454 TCGAAAAT
1 TCAAAAAT
13312462 ATAATATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
13 3 0.10
14 25 0.81
15 3 0.10
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (14 bp):
TCAAAAATTTATTT
Found at i:13323141 original size:24 final size:24
Alignment explanation
Indices: 13323114--13323177 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
13323104 TGTTATTACT
13323114 TTATTTTTTTATTTATATTTAATG
1 TTATTTTTTTATTTATATTTAATG
* * *
13323138 TTATTTTATTAGTTATATTTAATT
1 TTATTTTTTTATTTATATTTAATG
13323162 TTAATTTATTTT-TTTA
1 TT-ATTT-TTTTATTTA
13323178 AGAATAAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
24 23 0.70
25 7 0.21
26 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (24 bp):
TTATTTTTTTATTTATATTTAATG
Found at i:13323578 original size:27 final size:27
Alignment explanation
Indices: 13323526--13323578 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
13323516 CAAGTTCTTA
**
13323526 TTTCATTTTTTCGTTTTCTTGTTTTTCC
1 TTTCATTTTTTCG-TTTCTTAATTTTCC
13323554 TTTCATTTTTTTC-TTTCTTAATTTT
1 TTTCA-TTTTTTCGTTTCTTAATTTT
13323579 AGTTTTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 10 0.45
28 5 0.23
29 7 0.32
ACGTcount: A:0.08, C:0.15, G:0.04, T:0.74
Consensus pattern (27 bp):
TTTCATTTTTTCGTTTCTTAATTTTCC
Found at i:13324995 original size:2 final size:2
Alignment explanation
Indices: 13324990--13325014 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13324980 ATTCTCTCAC
13324990 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
13325015 TTGTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13327702 original size:2 final size:2
Alignment explanation
Indices: 13327695--13327726 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13327685 TTTTACACTG
13327695 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13327727 TCAAAGTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13335148 original size:17 final size:16
Alignment explanation
Indices: 13335125--13335168 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
13335115 TTCTTTTTTT
*
13335125 AAAAAATATTTTAATA
1 AAAAAATATTATAATA
13335141 ATAAAAATATTATAATA
1 A-AAAAATATTATAATA
*
13335158 AATAAATATTA
1 AAAAAATATTA
13335169 ATGGTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAAAATATTATAATA
Found at i:13335315 original size:138 final size:137
Alignment explanation
Indices: 13335125--13335391 Score: 328
Period size: 139 Copynumber: 1.9 Consensus size: 137
13335115 TTCTTTTTTT
* * *
13335125 AAAAAATATTTTAATAATAAAAATATTATAATAAATAAATATTAATGGTTTTTAATGTTATA-AT
1 AAAAAATATTTTAATAATAAAAATATTATAATAAATAAATACTAATGATTTTTAATATTATATAT
* * ** * *
13335189 TACATTAATTGCTTTGT-TGGAATTTTTTAATTTAATCTTATTTTTTAAAAA-AT-TATTTCTAT
66 TAAAATAATTGCTCCGTCTGGAA-CTTTTAATTTAATCTTAATTTTTAAAAATATAT-TTTCTAT
13335251 TTTGAAAAG
129 TTTGAAAAG
* **
13335260 AAAAAATATTTTACTAATAAGTCATACTATACTAA-AAATAAATACTAATGATTTTTAATATTAT
1 AAAAAATATTTTAATAATAA-AAATA-T-TA-TAATAAATAAATACTAATGATTTTTAATATTAT
*
13335324 ATGTTAAAATAATTGCTCCGTCTGGAACTTTTAATTTAATCTTAATTTTTAAAAATATATTTTCT
62 ATATTAAAATAATTGCTCCGTCTGGAACTTTTAATTTAATCTTAATTTTTAAAAATATATTTTCT
13335389 ATT
127 ATT
13335392 AAAAAAATAC
Statistics
Matches: 111, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
135 19 0.17
136 3 0.03
137 1 0.01
138 29 0.26
139 43 0.39
140 15 0.14
141 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (137 bp):
AAAAAATATTTTAATAATAAAAATATTATAATAAATAAATACTAATGATTTTTAATATTATATAT
TAAAATAATTGCTCCGTCTGGAACTTTTAATTTAATCTTAATTTTTAAAAATATATTTTCTATTT
TGAAAAG
Found at i:13335868 original size:16 final size:17
Alignment explanation
Indices: 13335849--13335888 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
13335839 GCATTTCATT
*
13335849 TTATTTACTTTTTCAA-
1 TTATTTACATTTTCAAG
13335865 TTATTTACATTTTCAAG
1 TTATTTACATTTTCAAG
13335882 TTATTTA
1 TTATTTA
13335889 TTTATTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.60
Consensus pattern (17 bp):
TTATTTACATTTTCAAG
Found at i:13335909 original size:24 final size:25
Alignment explanation
Indices: 13335865--13335911 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
13335855 ACTTTTTCAA
13335865 TTATTTACATTTTCAAGTTATTTAT
1 TTATTTACATTTTCAAGTTATTTAT
13335890 TTATTTA-ATATTT-AAGTTATTT
1 TTATTTACAT-TTTCAAGTTATTT
13335912 GTTTCAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (25 bp):
TTATTTACATTTTCAAGTTATTTAT
Found at i:13336733 original size:41 final size:43
Alignment explanation
Indices: 13336683--13336768 Score: 115
Period size: 42 Copynumber: 2.0 Consensus size: 43
13336673 ATCAATTGTC
*
13336683 TTTCTAAATACTCT-AGCATTTTTG-TAACATTTTAGAAAAATA
1 TTTCTAAATA-TCTAAGCACTTTTGATAACATTTTAGAAAAATA
* *
13336725 TTTC-AAATATTTAAGTACTTTTGATAACATTTTAGAAAAATA
1 TTTCTAAATATCTAAGCACTTTTGATAACATTTTAGAAAAATA
13336767 TT
1 TT
13336769 CTACTCAGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
40 2 0.05
41 13 0.33
42 24 0.62
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (43 bp):
TTTCTAAATATCTAAGCACTTTTGATAACATTTTAGAAAAATA
Found at i:13337478 original size:17 final size:17
Alignment explanation
Indices: 13337456--13337496 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
13337446 TTTGTTTTAA
13337456 AATTAATTTCTTT-AATT
1 AATTAATTT-TTTAAATT
13337473 AATTAATTTTTTAAATT
1 AATTAATTTTTTAAATT
13337490 ATATTAA
1 A-ATTAA
13337497 CTAATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 14 0.64
18 5 0.23
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTAATTTTTTAAATT
Found at i:13339950 original size:20 final size:20
Alignment explanation
Indices: 13339913--13339950 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13339903 TGATGCACAT
*
13339913 ATTTTATTTTGTTTTTATAA
1 ATTTTATTTTGTTGTTATAA
13339933 ATTTTATTATT-TTGTTAT
1 ATTTTATT-TTGTTGTTAT
13339951 TTTTTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
ATTTTATTTTGTTGTTATAA
Found at i:13340468 original size:87 final size:87
Alignment explanation
Indices: 13340371--13340702 Score: 355
Period size: 87 Copynumber: 3.8 Consensus size: 87
13340361 AAATTAAATT
* * * *
13340371 TTTTTCAAAAGTCATTTAACCTTTATTTAAAGGAGCCTTATTTATTTATCAAAATTCA-TGAGCC
1 TTTTTCAAAAGTCATTGAACCTTTATTTAAAGGAGCCTTATTTATTTTTCAAAAGTCATTTAGCC
*
13340435 TTTGTTTAGCGAAGCCTTATTTA
66 TTTGTTTAGAG-AGCCTTATTTA
** * **
13340458 TTTTTCAAAAGTCA-AAAACCTCTATTTAAAGGAGCCTTATTCGTTTTTCAAAAGTCATTTAGCC
1 TTTTTCAAAAGTCATTGAACCTTTATTTAAAGGAGCCTTATTTATTTTTCAAAAGTCATTTAGCC
* *
13340522 GTTGTTTAGATGAGCCTTATCTA
66 TTTGTTTAGA-GAGCCTTATTTA
* * * * * * * ** *
13340545 TTTATAAAAAATC-GTGAGCCTTTATTTAGAGGGGTTTTATATATTTTTCAAAAGTCATTTAGCC
1 TTTTTCAAAAGTCATTGAACCTTTATTTAAAGGAGCCTTATTTATTTTTCAAAAGTCATTTAGCC
13340609 TTTGTTTAGAGGAGCCTTATTTA
66 TTTGTTTAGA-GAGCCTTATTTA
* * * * * * *
13340632 TTTTTCAAAAGTCATTGAACTTTTGTTTAGATGAGCCTTATTTATTTTTCAAAAATCATTAAGCT
1 TTTTTCAAAAGTCATTGAACCTTTATTTAAAGGAGCCTTATTTATTTTTCAAAAGTCATTTAGCC
13340697 TTTGTT
66 TTTGTT
13340703 GAAAAAAGCT
Statistics
Matches: 198, Mismatches: 43, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
86 36 0.18
87 116 0.59
88 46 0.23
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (87 bp):
TTTTTCAAAAGTCATTGAACCTTTATTTAAAGGAGCCTTATTTATTTTTCAAAAGTCATTTAGCC
TTTGTTTAGAGAGCCTTATTTA
Found at i:13340617 original size:44 final size:44
Alignment explanation
Indices: 13340371--13340702 Score: 319
Period size: 44 Copynumber: 7.6 Consensus size: 44
13340361 AAATTAAATT
* * * *
13340371 TTTTTCAAAAGTCATTTAACCTTTATTTAAAGGAGCCTTATTTA
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
* * * *
13340415 TTTATCAAAATTCA-TGAGCCTTTGTTTAGCGAAGCCTTATTTA
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
** * * * * **
13340458 TTTTTCAAAAGTCA-AAAACCTCTATTTAAAGGAGCCTTATTCG
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
* * * *
13340501 TTTTTCAAAAGTCATTTAGCCGTTGTTTAGATGAGCCTTATCTA
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
* * * * * * ** *
13340545 TTTATAAAAAATC-GTGAGCCTTTATTTAGAGGGGTTTTATATA
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
*
13340588 TTTTTCAAAAGTCATTTAGCCTTTGTTTAGAGGAGCCTTATTTA
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
* * *
13340632 TTTTTCAAAAGTCATTGAACTTTTGTTTAGATGAGCCTTATTTA
1 TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
* * *
13340676 TTTTTCAAAAATCATTAAGCTTTTGTT
1 TTTTTCAAAAGTCATTGAGCCTTTGTT
13340703 GAAAAAAGCT
Statistics
Matches: 226, Mismatches: 60, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
43 99 0.44
44 127 0.56
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (44 bp):
TTTTTCAAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTATTTA
Found at i:13341027 original size:18 final size:19
Alignment explanation
Indices: 13341006--13341047 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
13340996 ATTTAGATTA
*
13341006 TAAAGTTTG-AGTTGGACT
1 TAAAGTTTGAAGTTGGAAT
13341024 TAAAGTTTGAAGTTGGAAT
1 TAAAGTTTGAAGTTGGAAT
13341043 TAAAG
1 TAAAG
13341048 AACAATTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (19 bp):
TAAAGTTTGAAGTTGGAAT
Found at i:13342355 original size:15 final size:14
Alignment explanation
Indices: 13342335--13342409 Score: 59
Period size: 15 Copynumber: 5.4 Consensus size: 14
13342325 GAATTTCTTA
13342335 AGAAATCTCTATGTG
1 AGAAATCT-TATGTG
* *
13342350 AGAAAT-TTCT-TA
1 AGAAATCTTATGTG
13342362 AGAAATCTCTATGTG
1 AGAAATCT-TATGTG
* *
13342377 AGAAAT-TTCT-TA
1 AGAAATCTTATGTG
13342389 AGAAATCTTTATGTG
1 AGAAATC-TTATGTG
13342404 AGAAAT
1 AGAAAT
13342410 TTCTTTAAAG
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
12 14 0.30
13 5 0.11
14 7 0.15
15 20 0.43
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (14 bp):
AGAAATCTTATGTG
Found at i:13342358 original size:27 final size:27
Alignment explanation
Indices: 13342326--13342414 Score: 169
Period size: 27 Copynumber: 3.3 Consensus size: 27
13342316 TCAAATGATG
13342326 AATTTCTTAAGAAATCTCTATGTGAGA
1 AATTTCTTAAGAAATCTCTATGTGAGA
13342353 AATTTCTTAAGAAATCTCTATGTGAGA
1 AATTTCTTAAGAAATCTCTATGTGAGA
*
13342380 AATTTCTTAAGAAATCTTTATGTGAGA
1 AATTTCTTAAGAAATCTCTATGTGAGA
13342407 AATTTCTT
1 AATTTCTT
13342415 TAAAGTCAAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.40
Consensus pattern (27 bp):
AATTTCTTAAGAAATCTCTATGTGAGA
Found at i:13342692 original size:90 final size:91
Alignment explanation
Indices: 13342589--13342753 Score: 260
Period size: 91 Copynumber: 1.8 Consensus size: 91
13342579 TTCGATGATA
* * * *
13342589 AAATTCTTAGTAATTACAAATGGATGATTATCT-AAAAACTTCTAGATGAAAAAATATTTCTAAT
1 AAATTATTAGTAATCACAAATGGATAATTATCTAAAAAACTTCTAAATGAAAAAATATTTCTAAT
13342653 TTAGGCCCAATTTATTTTCAAAGATG
66 TTAGGCCCAATTTATTTTCAAAGATG
* * *
13342679 AAATTATTAGTAATCATAAATGGATAATTATCTAAAAAACTTCTAAATGAGAAAATATTTTTAAT
1 AAATTATTAGTAATCACAAATGGATAATTATCTAAAAAACTTCTAAATGAAAAAATATTTCTAAT
13342744 TTAGGCCCAA
66 TTAGGCCCAA
13342754 ATGGTAAAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
90 29 0.43
91 38 0.57
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (91 bp):
AAATTATTAGTAATCACAAATGGATAATTATCTAAAAAACTTCTAAATGAAAAAATATTTCTAAT
TTAGGCCCAATTTATTTTCAAAGATG
Found at i:13344692 original size:4 final size:4
Alignment explanation
Indices: 13344683--13344805 Score: 66
Period size: 4 Copynumber: 30.5 Consensus size: 4
13344673 TTCAATCTTG
* * * * * ***
13344683 ATAT ATAT ATAT ATAT ATAT GTAT GTAT ATGT ATAT GTAT GTAT ACGC
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* ** * * * * * * *
13344731 ATAC ATAT GCAT ACAA ATAC AAAT ACAT ATAC ATAT ACTAT ATCT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT A-TAT ATAT ATAT
*
13344780 ATAT ATAT ATAT ATAT ATAT AGAT AT
1 ATAT ATAT ATAT ATAT ATAT ATAT AT
13344806 GTACATGTAT
Statistics
Matches: 90, Mismatches: 28, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
4 86 0.96
5 4 0.04
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.41
Consensus pattern (4 bp):
ATAT
Found at i:13344692 original size:6 final size:6
Alignment explanation
Indices: 13344683--13344805 Score: 66
Period size: 6 Copynumber: 20.3 Consensus size: 6
13344673 TTCAATCTTG
* * * * * ***
13344683 ATATAT ATATAT ATATAT ATGTAT GTATAT GTATAT GTATGT ATACGC
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* ** * * * * * * *
13344731 ATACAT ATGCAT ACAAAT ACAAAT ACATAT ACATAT ACTATAT CTATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT A-TATAT ATATAT
*
13344780 ATATAT ATATAT ATATAT ATAGAT AT
1 ATATAT ATATAT ATATAT ATATAT AT
13344806 GTACATGTAT
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
6 94 0.96
7 4 0.04
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.41
Consensus pattern (6 bp):
ATATAT
Found at i:13344698 original size:10 final size:10
Alignment explanation
Indices: 13344683--13344805 Score: 66
Period size: 10 Copynumber: 12.2 Consensus size: 10
13344673 TTCAATCTTG
13344683 ATATATATAT
1 ATATATATAT
13344693 ATATATATAT
1 ATATATATAT
* *
13344703 GTATGTATAT
1 ATATATATAT
* *
13344713 GTATATGTAT
1 ATATATATAT
* ***
13344723 GTATACGCAT
1 ATATATATAT
* **
13344733 ACATATGCAT
1 ATATATATAT
* * * *
13344743 ACAAATACAA
1 ATATATATAT
* *
13344753 ATACATATAC
1 ATATATATAT
13344763 ATATACTATAT
1 ATATA-TATAT
*
13344774 CTATATATAT
1 ATATATATAT
13344784 ATATATATAT
1 ATATATATAT
*
13344794 ATATATAGAT
1 ATATATATAT
13344804 AT
1 AT
13344806 GTACATGTAT
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
10 83 0.91
11 8 0.09
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.41
Consensus pattern (10 bp):
ATATATATAT
Found at i:13351160 original size:2 final size:2
Alignment explanation
Indices: 13351155--13351203 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
13351145 CATATATTGG
* *
13351155 TA TA TA TA AA TA TA AA TA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13351196 TA TA TA TA
1 TA TA TA TA
13351204 CCTACAAAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:13359195 original size:20 final size:21
Alignment explanation
Indices: 13359159--13359197 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
13359149 TTTGTTAATT
13359159 TTACTTATATTTATTATTAAA
1 TTACTTATATTTATTATTAAA
*
13359180 TTACTTA-ATTTGTTATTA
1 TTACTTATATTTATTATTA
13359198 TGTGTAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (21 bp):
TTACTTATATTTATTATTAAA
Found at i:13359315 original size:17 final size:16
Alignment explanation
Indices: 13359295--13359357 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 16
13359285 TAAATCAATG
*
13359295 TTAAATTTATAATTTAT
1 TTAAATTAATAATTT-T
13359312 TTAAATTAAAATAATATTT
1 TTAAATT--AATAAT-TTT
13359331 TTAAATTAATAA--TT
1 TTAAATTAATAATTTT
13359345 TT-AATTAATAATT
1 TTAAATTAATAATT
13359358 CAAAAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 9 0.22
14 4 0.10
17 12 0.30
19 13 0.32
20 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAATTAATAATTTT
Found at i:13359350 original size:13 final size:14
Alignment explanation
Indices: 13359317--13359357 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
13359307 TTTATTTAAA
* *
13359317 TTAAAATAATATTT
1 TTAAATTAATAATT
13359331 TTAAATTAATAATT
1 TTAAATTAATAATT
13359345 TT-AATTAATAATT
1 TTAAATTAATAATT
13359358 CAAAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAAATTAATAATT
Found at i:13360339 original size:2 final size:2
Alignment explanation
Indices: 13360332--13360362 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
13360322 TTGCAAAATA
13360332 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13360363 TGATGTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13364381 original size:21 final size:23
Alignment explanation
Indices: 13364355--13364405 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
13364345 ATTTCAATTG
*
13364355 TTTTTAATTGC-TACT-TTTTTT
1 TTTTTAATTGCAGACTCTTTTTT
*
13364376 TTTTTAATTTCAGACTCTTTTTT
1 TTTTTAATTGCAGACTCTTTTTT
13364399 TTTTTAA
1 TTTTTAA
13364406 ATAGCCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 10 0.38
22 3 0.12
23 13 0.50
ACGTcount: A:0.18, C:0.10, G:0.04, T:0.69
Consensus pattern (23 bp):
TTTTTAATTGCAGACTCTTTTTT
Found at i:13366021 original size:15 final size:17
Alignment explanation
Indices: 13365991--13366032 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
13365981 GTTGTAGGGA
* *
13365991 AGAAAAAGGAGGAAAA-
1 AGAAAAAAGAGAAAAAG
13366007 A-AAAAAAGAGAAAAAG
1 AGAAAAAAGAGAAAAAG
13366023 AGAAAAAAGA
1 AGAAAAAAGA
13366033 TGATGAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 12 0.55
16 2 0.09
17 8 0.36
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AGAAAAAAGAGAAAAAG
Found at i:13367639 original size:2 final size:2
Alignment explanation
Indices: 13367632--13367657 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13367622 TTCCCATCAA
13367632 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13367658 GAGATATCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13370683 original size:6 final size:6
Alignment explanation
Indices: 13370669--13370738 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
13370659 TGTATTTCAC
* * * *
13370669 ATTTCT ATTTTT ATTTTT ATTTTT ATTATT ATTATT ATTTTTT ATATATAT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A-TTTTT AT-T-TTT
*
13370720 ATTTTT -CTTTT ATTTTT AT
1 ATTTTT ATTTTT ATTTTT AT
13370739 CTTAGGTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
5 4 0.08
6 38 0.72
7 7 0.13
8 4 0.08
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:13370867 original size:28 final size:29
Alignment explanation
Indices: 13370836--13370905 Score: 74
Period size: 28 Copynumber: 2.4 Consensus size: 29
13370826 TTATATTATA
13370836 TTTT-ATTTAATTTTAATTTATCT-ATTTT
1 TTTTAATTT-ATTTTAATTTATCTGATTTT
* *
13370864 TTTTAATTTA-TCTGATTTATCTGATTTT
1 TTTTAATTTATTTTAATTTATCTGATTTT
*
13370892 TTTTCATTTTATTT
1 TTTT-AATTTATTT
13370906 CTTTGATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
27 10 0.29
28 14 0.41
29 9 0.26
30 1 0.03
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (29 bp):
TTTTAATTTATTTTAATTTATCTGATTTT
Found at i:13370869 original size:18 final size:19
Alignment explanation
Indices: 13370846--13370881 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
13370836 TTTTATTTAA
13370846 TTTTAATTTATCT-ATTTT
1 TTTTAATTTATCTGATTTT
13370864 TTTTAATTTATCTGATTT
1 TTTTAATTTATCTGATTT
13370882 ATCTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTAATTTATCTGATTTT
Found at i:13371245 original size:18 final size:19
Alignment explanation
Indices: 13371226--13371262 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13371216 CAGATTTCAA
13371226 TTGAATTTTTCGACGAAAT
1 TTGAATTTTTCGACGAAAT
* *
13371245 TTGTATTTTTCGATGAAA
1 TTGAATTTTTCGACGAAA
13371263 ATTCTGGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (19 bp):
TTGAATTTTTCGACGAAAT
Found at i:13371783 original size:5 final size:5
Alignment explanation
Indices: 13371773--13371856 Score: 59
Period size: 5 Copynumber: 16.6 Consensus size: 5
13371763 TCTTTTCACC
* *
13371773 TTTAT TTTATT TTTAT TCTTGT TTTACT TTT-C TTTAT TTTAT TTT-T
1 TTTAT TTTA-T TTTAT T-TTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
* *
13371819 TTTAT TTTCACT TTTAT CTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
13371857 CTTTAAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 18
0.70 0.09 0.20
Matches are distributed among these distances:
3 3 0.05
4 7 0.11
5 33 0.53
6 15 0.24
7 4 0.06
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:13371833 original size:15 final size:15
Alignment explanation
Indices: 13371794--13371833 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
13371784 TTTATTCTTG
13371794 TTTTACTTTTCTTTA
1 TTTTACTTTTCTTTA
*
13371809 TTTTA-TTTTTTTTA
1 TTTTACTTTTCTTTA
13371823 TTTTCACTTTT
1 TTTT-ACTTTT
13371834 ATCTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 12 0.55
15 6 0.27
16 4 0.18
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTACTTTTCTTTA
Found at i:13371942 original size:58 final size:59
Alignment explanation
Indices: 13371874--13372448 Score: 612
Period size: 59 Copynumber: 9.7 Consensus size: 59
13371864 TAAAAATAAA
* * *
13371874 AAAACAATA-TTTTGGGGAAAAGTTAAAAATATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
* *
13371933 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTT-
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
** * * **
13371990 AAAAAAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTAAA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTT-TC
* * * *
13372049 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAAT--AAATTTTG
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
*** * * **
13372106 AAAAAAGGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTAAAA
1 AAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTT--TC
* *
13372168 AAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATCAAAATTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
* * *
13372226 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATC-AAAGTTTC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
* * ** *
13372284 AAAAAAAAAAAAAAATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTT
1 -------AAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTT
13372349 TC
58 TC
** * * *
13372351 AAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT--GAATTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
* *
13372408 AAAAGATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
13372449 CTGCATAAAA
Statistics
Matches: 442, Mismatches: 56, Indels: 38
0.82 0.10 0.07
Matches are distributed among these distances:
57 99 0.22
58 104 0.24
59 126 0.29
60 24 0.05
61 33 0.07
62 6 0.01
65 7 0.02
66 37 0.08
67 6 0.01
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.34
Consensus pattern (59 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC
Found at i:13372312 original size:66 final size:68
Alignment explanation
Indices: 13372226--13372356 Score: 203
Period size: 66 Copynumber: 2.0 Consensus size: 68
13372216 CAAAATTTCC
*
13372226 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATCAAAG-TTTCAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTCAAAAATCAAAGTTTTCAAAAAA
13372290 AAA
66 AAA
* * * *
13372293 AAAAAAT-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATCAAAGTTTTCAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTCAAAAATCAAAGTTTTCAAAAAA
13372357 TATTTTTAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 41 0.71
67 17 0.29
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (68 bp):
AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTCAAAAATCAAAGTTTTCAAAAAA
AAA
Found at i:13374159 original size:22 final size:23
Alignment explanation
Indices: 13374085--13374166 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 23
13374075 GTTAGCAATG
* * *
13374085 ATTTACTATTATATATTATCAATG
1 ATTTACTATTAAATA-TATGAATA
* *
13374109 ATTTACTACTAAATTATATGATTA
1 ATTTACTATTAAA-TATATGAATA
13374133 ATTTACTATTAAA-ATATGAATA
1 ATTTACTATTAAATATATGAATA
* *
13374155 GTTTATTATTAA
1 ATTTACTATTAA
13374167 GTTATCCATA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
22 18 0.38
24 28 0.58
25 2 0.04
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (23 bp):
ATTTACTATTAAATATATGAATA
Found at i:13374379 original size:22 final size:22
Alignment explanation
Indices: 13374072--13374480 Score: 115
Period size: 22 Copynumber: 19.0 Consensus size: 22
13374062 AAAAAATTAA
*
13374072 TAAGTTAGCAATGATTTACTAT
1 TAAGTTATCAATGATTTACTAT
* *
13374094 TATATATTATCAATGATTTACTAC
1 TA-A-GTTATCAATGATTTACTAT
* *
13374118 TAAATTAT-ATGATTAATTTACTAT
1 TAAGTTATCA--A-TGATTTACTAT
** * *
13374142 TAAAATATGAAT-AGTTTATTAT
1 TAAGTTATCAATGA-TTTACTAT
* *
13374164 TAAGTTATCCAT-ACTTTACTAC
1 TAAGTTATCAATGA-TTTACTAT
* * *
13374186 TAAGCTA-AAATTGATTTATTA-
1 TAAGTTATCAA-TGATTTACTAT
* * *
13374207 TAAATTATC-ATTAGTT--TAT
1 TAAGTTATCAATGATTTACTAT
*
13374226 T--GTTATCATTGATTTA-TAACT
1 TAAGTTATCAATGATTTACT-A-T
13374247 TAA-TTAT-AACTGATTTA-TCAT
1 TAAGTTATCAA-TGATTTACT-AT
* * * *
13374268 TAAGTTATCAATAAATTACAAC
1 TAAGTTATCAATGATTTACTAT
* * *
13374290 TAAATTAACATTGA--TA-TAT
1 TAAGTTATCAATGATTTACTAT
* *
13374309 T-A-TTAT-AATTAATTTATTAT
1 TAAGTTATCAA-TGATTTACTAT
* * *
13374329 TATGTTATTAATGA-TTATTAT
1 TAAGTTATCAATGATTTACTAT
*
13374350 TAAATTATCAATGATTTACTAT
1 TAAGTTATCAATGATTTACTAT
* * *
13374372 TAAGTTATGAATGATTTATTAC
1 TAAGTTATCAATGATTTACTAT
** * *
13374394 TAAGTTATTGATAATTTATTAT
1 TAAGTTATCAATGATTTACTAT
* * *
13374416 AAAGTTAT-AACTAATTTTCTAT
1 TAAGTTATCAA-TGATTTACTAT
* * *
13374438 GAAGTTATAAATGATTTACAAT
1 TAAGTTATCAATGATTTACTAT
* * *
13374460 AAAATTATCAATGATTAACTA
1 TAAGTTATCAATGATTTACTA
13374481 ATTTATTACT
Statistics
Matches: 287, Mismatches: 69, Indels: 62
0.69 0.17 0.15
Matches are distributed among these distances:
16 1 0.00
17 10 0.03
18 7 0.02
19 6 0.02
20 11 0.04
21 35 0.12
22 171 0.60
23 11 0.04
24 34 0.12
25 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (22 bp):
TAAGTTATCAATGATTTACTAT
Found at i:13374445 original size:66 final size:65
Alignment explanation
Indices: 13374311--13374455 Score: 159
Period size: 66 Copynumber: 2.2 Consensus size: 65
13374301 TGATATATTA
* * * * * * *
13374311 TTATAATTAATTTATTATTATGTTATTAATGATTATTATTAAATTATCAATGATTTACTATTAAG
1 TTATAAATGATTTATTACTAAGTTATTAATAATTATTATTAAATTATCAATAATTTACTATGAAG
* * *
13374376 TTATGAATGATTTATTACTAAGTTATTGATAATTTATTA-TAAAGTTAT-AACTAATTTTCTATG
1 TTATAAATGATTTATTACTAAGTTATTAATAA-TTATTATTAAA-TTATCAA-TAATTTACTATG
13374439 AAG
63 AAG
13374442 TTATAAATGATTTA
1 TTATAAATGATTTA
13374456 CAATAAAATT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
65 31 0.47
66 35 0.53
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (65 bp):
TTATAAATGATTTATTACTAAGTTATTAATAATTATTATTAAATTATCAATAATTTACTATGAAG
Found at i:13374663 original size:22 final size:22
Alignment explanation
Indices: 13374638--13374700 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
13374628 AATTAGCTGT
*
13374638 TAAGTTATTAATTATTTAGTAC
1 TAAGTTATTAATTATTTACTAC
* *
13374660 TAAGTTATCAATTGAATTACTAC
1 TAAGTTATTAATT-ATTTACTAC
* *
13374683 TAAGTTATTTATGATTTA
1 TAAGTTATTAATTATTTA
13374701 TTATTAATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 16 0.48
23 17 0.52
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (22 bp):
TAAGTTATTAATTATTTACTAC
Found at i:13375038 original size:44 final size:44
Alignment explanation
Indices: 13374969--13375082 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 44
13374959 TTATCATTGA
* * * * * *
13374969 TTACTTCTAAATTATCATTAATTTATCACTAAGTTATAGATGAT
1 TTACTACTAAGTTATAAATAATTTATCACTAAATTATAGATAAT
* * * *
13375013 TTATTACTAAGTTATAAATGATTTATTACTAAATTATTGATAAT
1 TTACTACTAAGTTATAAATAATTTATCACTAAATTATAGATAAT
* *
13375057 TTACTATTAAGTTATAGATAATTTAT
1 TTACTACTAAGTTATAAATAATTTAT
13375083 TATAAAGTTA
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (44 bp):
TTACTACTAAGTTATAAATAATTTATCACTAAATTATAGATAAT
Found at i:13375049 original size:11 final size:10
Alignment explanation
Indices: 13375033--13375141 Score: 74
Period size: 11 Copynumber: 10.1 Consensus size: 10
13375023 GTTATAAATG
13375033 ATTTATTACTA
1 ATTTATTA-TA
*
13375044 AATTATTGATA
1 ATTTATT-ATA
*
13375055 ATTTACTATTA
1 ATTTATTA-TA
* *
13375066 AGTTATAGATA
1 ATTTAT-TATA
13375077 ATTTATTATAA
1 ATTTATTAT-A
*
13375088 AGTTATTACTA
1 ATTTATTA-TA
*
13375099 ATTTACTATA
1 ATTTATTATA
13375109 ATTTATTATAA
1 ATTTATTAT-A
*
13375120 AATTATTACTA
1 ATTTATTA-TA
*
13375131 ATTTACTATA
1 ATTTATTATA
13375141 A
1 A
13375142 CGTTATTGAT
Statistics
Matches: 76, Mismatches: 15, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
10 16 0.21
11 56 0.74
12 4 0.05
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.49
Consensus pattern (10 bp):
ATTTATTATA
Found at i:13375060 original size:19 final size:21
Alignment explanation
Indices: 13374998--13375114 Score: 92
Period size: 22 Copynumber: 5.4 Consensus size: 21
13374988 AATTTATCAC
* *
13374998 TAAGTTATAGATGATTTATTA
1 TAAGTTATAGATAATTTACTA
* * *
13375019 CTAAGTTATAAATGATTTATTA
1 -TAAGTTATAGATAATTTACTA
* *
13375041 CTAAATTATTGATAATTTACTA
1 -TAAGTTATAGATAATTTACTA
*
13375063 TTAAGTTATAGATAATTTATTA
1 -TAAGTTATAGATAATTTACTA
*
13375085 TAAAGTTATTA-CTAATTTACTA
1 T-AAGTTA-TAGATAATTTACTA
*
13375107 TAATTTAT
1 TAAGTTAT
13375115 TATAAAATTA
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
20 1 0.01
21 6 0.08
22 71 0.89
23 2 0.03
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (21 bp):
TAAGTTATAGATAATTTACTA
Found at i:13375083 original size:44 final size:44
Alignment explanation
Indices: 13374987--13375131 Score: 138
Period size: 44 Copynumber: 3.3 Consensus size: 44
13374977 AAATTATCAT
* * * * * *
13374987 TAATTTATCACTAAGTTATAGATGATTTATTACTAAGTTATAAA
1 TAATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAAA
* *
13375031 TGATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAGA
1 TAATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAAA
*
13375075 TAATTTATTA-TAAAGTTATT-ACTAATTTACTA-TAATTTATTATAA
1 TAATTTATTACTAAA-TTATTGA-TAATTTACTATTAAGTTA-TA-AA
13375120 -AA-TTATTACTAA
1 TAATTTATTACTAA
13375132 TTTACTATAA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
43 17 0.20
44 67 0.79
45 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (44 bp):
TAATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAAA
Found at i:13375090 original size:22 final size:23
Alignment explanation
Indices: 13374987--13375093 Score: 116
Period size: 22 Copynumber: 4.9 Consensus size: 23
13374977 AAATTATCAT
*
13374987 TAATTTATCACT-AAGTTATAGA
1 TAATTTATTACTAAAGTTATAGA
* *
13375009 TGATTTATTACT-AAGTTATAAA
1 TAATTTATTACTAAAGTTATAGA
* *
13375031 TGATTTATTACTAAA-TTATTGA
1 TAATTTATTACTAAAGTTATAGA
* *
13375053 TAATTTACTA-TTAAGTTATAGA
1 TAATTTATTACTAAAGTTATAGA
13375075 TAATTTATTA-TAAAGTTAT
1 TAATTTATTACTAAAGTTAT
13375094 TACTAATTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
21 3 0.04
22 67 0.93
23 2 0.03
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (23 bp):
TAATTTATTACTAAAGTTATAGA
Found at i:13375103 original size:66 final size:64
Alignment explanation
Indices: 13374976--13375119 Score: 157
Period size: 66 Copynumber: 2.2 Consensus size: 64
13374966 TGATTACTTC
* * * * *
13374976 TAAATTATCATTAATTTA-TCACTAAGTTATAGATGATTTATTACTAAGTTATAAATGATTTATT
1 TAAATTATTA-TAATTTACT-ATTAAGTTATAGATAATTTATTACTAAGTTATAAATAATTTACT
13375040 A
64 A
* *
13375041 CTAAATTATTGATAATTTACTATTAAGTTATAGATAATTTATTA-TAAAGTTATTACTAATTTAC
1 -TAAATTATT-ATAATTTACTATTAAGTTATAGATAATTTATTACT-AAGTTATAAATAATTTAC
13375105 TA
63 TA
*
13375107 TAATTTATTATAA
1 TAAATTATTATAA
13375120 AATTATTACT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
64 4 0.06
65 9 0.13
66 52 0.78
67 2 0.03
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (64 bp):
TAAATTATTATAATTTACTATTAAGTTATAGATAATTTATTACTAAGTTATAAATAATTTACTA
Found at i:13375115 original size:32 final size:32
Alignment explanation
Indices: 13375074--13375141 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
13375064 TAAGTTATAG
*
13375074 ATAATTTATTATAAAGTTATTACTAATTTACT
1 ATAATTTATTATAAAATTATTACTAATTTACT
13375106 ATAATTTATTATAAAATTATTACTAATTTACT
1 ATAATTTATTATAAAATTATTACTAATTTACT
13375138 ATAA
1 ATAA
13375142 CGTTATTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (32 bp):
ATAATTTATTATAAAATTATTACTAATTTACT
Found at i:13375167 original size:76 final size:76
Alignment explanation
Indices: 13375033--13375182 Score: 182
Period size: 76 Copynumber: 2.0 Consensus size: 76
13375023 GTTATAAATG
* *
13375033 ATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAGATAATTTATTATAAAGTTATTACT
1 ATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAGATAATTTACTATAAAGTTATTAAT
*
13375098 AATTTACTATA
66 AATTAACTATA
* * *
13375109 ATTTATTA-TAAAATTATT-ACTAATTTACTA-TAACGTTATTGATGATTTACTA-AGAAGTTGT
1 ATTTATTACT-AAATTATTGA-TAATTTACTATTAA-GTTATAGATAATTTACTATA-AAGTTAT
13375170 TAATAATTAACTA
62 TAATAATTAACTA
13375183 ATTTACAACT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
75 6 0.09
76 58 0.91
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.47
Consensus pattern (76 bp):
ATTTATTACTAAATTATTGATAATTTACTATTAAGTTATAGATAATTTACTATAAAGTTATTAAT
AATTAACTATA
Found at i:13375206 original size:22 final size:22
Alignment explanation
Indices: 13375181--13375253 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 22
13375171 AATAATTAAC
*
13375181 TAATTTACAACTAAATCATTAT
1 TAATTTACAACTAAATCATCAT
* *
13375203 TAATTTA-TACTAAATTATCAT
1 TAATTTACAACTAAATCATCAT
* * * * *
13375224 TGATTTACAGCTAAGTTATCAA
1 TAATTTACAACTAAATCATCAT
13375246 TAATTTAC
1 TAATTTAC
13375254 TATAACATTA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
21 17 0.41
22 24 0.59
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.42
Consensus pattern (22 bp):
TAATTTACAACTAAATCATCAT
Found at i:13375264 original size:22 final size:22
Alignment explanation
Indices: 13375239--13375332 Score: 100
Period size: 22 Copynumber: 4.2 Consensus size: 22
13375229 TACAGCTAAG
13375239 TTATCAATAATTTACTATAACA
1 TTATCAATAATTTACTATAACA
* * *
13375261 TTATTAGTGATTTACTACTAA-A
1 TTATCAATAATTTACTA-TAACA
* *
13375283 TTGTCAATAATTTACTATAAAA
1 TTATCAATAATTTACTATAACA
*
13375305 TTATCAATGATTTACTATATACTA
1 TTATCAATAATTTACTATA-AC-A
13375329 TTAT
1 TTAT
13375333 GCATTTGGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
21 3 0.05
22 46 0.79
23 4 0.07
24 5 0.09
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (22 bp):
TTATCAATAATTTACTATAACA
Found at i:13375275 original size:44 final size:43
Alignment explanation
Indices: 13375183--13375321 Score: 147
Period size: 44 Copynumber: 3.2 Consensus size: 43
13375173 TAATTAACTA
* * * * *
13375183 ATTTACAACTAAATCATTATTAATTTA-TACTAAATTATCATTG
1 ATTTACTACTAAATTATCAATAATTTACTA-TAAATTATCAATG
* * *
13375226 ATTTAC-AGCTAAGTTATCAATAATTTACTATAACATTATTAGTG
1 ATTTACTA-CTAAATTATCAATAATTTACTATAA-ATTATCAATG
*
13375270 ATTTACTACTAAATTGTCAATAATTTACTATAAAATTATCAATG
1 ATTTACTACTAAATTATCAATAATTTACTAT-AAATTATCAATG
13375314 ATTTACTA
1 ATTTACTA
13375322 TATACTATTA
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
42 1 0.01
43 24 0.30
44 53 0.65
45 3 0.04
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.42
Consensus pattern (43 bp):
ATTTACTACTAAATTATCAATAATTTACTATAAATTATCAATG
Found at i:13375296 original size:66 final size:67
Alignment explanation
Indices: 13375205--13375332 Score: 156
Period size: 66 Copynumber: 1.9 Consensus size: 67
13375195 ATCATTATTA
* * *
13375205 ATTTATACTAAATTATCATTGATTTAC-AGCT-AAGTTATCAATAATTTACTATA-AC-ATTATT
1 ATTTATACTAAATTATCAATAATTTACTA--TAAAATTATCAATAATTTACTATATACTATTATT
13375266 AGTG
64 AGTG
* *
13375270 ATTTACTACTAAATTGTCAATAATTTACTATAAAATTATCAATGATTTACTATATACTATTAT
1 ATTTA-TACTAAATTATCAATAATTTACTATAAAATTATCAATAATTTACTATATACTATTAT
13375333 GCATTTGGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
65 6 0.11
66 39 0.74
67 3 0.06
68 5 0.09
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (67 bp):
ATTTATACTAAATTATCAATAATTTACTATAAAATTATCAATAATTTACTATATACTATTATTAG
TG
Found at i:13375492 original size:22 final size:21
Alignment explanation
Indices: 13375466--13375703 Score: 113
Period size: 22 Copynumber: 10.9 Consensus size: 21
13375456 AACTAAAACA
*
13375466 GATTTACTATTAAGTTATCTGT
1 GATTTACTATTAAATTATCT-T
* * *
13375488 AATTTATTATTAAATTTTCATT
1 GATTTACTATTAAATTATC-TT
*
13375510 GATTTACTATTAAATTATCAAT
1 GATTTACTATTAAATTATC-TT
* * *
13375532 GATTAACTATTAAGTTATAATT
1 GATTTACTATTAAATTAT-CTT
* ** *
13375554 TATTTTTTATTAAGTTATCATT
1 GATTTACTATTAAATTATC-TT
* * *
13375576 GATTTACTACTATGA-TATTTT
1 GATTTACTATTA-AATTATCTT
* ** *
13375597 GCATTTACAATTATGTTATAATT
1 G-ATTTACTATTAAATTAT-CTT
*
13375620 GATTTACTATTAAGTTAT-TAT
1 GATTTACTATTAAATTATCT-T
* * *
13375641 GCATTTACTATTATATTGTTATT
1 G-ATTTACTATTAAATT-ATCTT
* *
13375664 GATTTACTACTAAGTTATCAATT
1 GATTTACTATTAAATTATC--TT
13375687 -ATTTACTATTAAATTAT
1 GATTTACTATTAAATTAT
13375704 TATTGATATG
Statistics
Matches: 162, Mismatches: 41, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
20 1 0.01
21 6 0.04
22 145 0.90
23 9 0.06
24 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.52
Consensus pattern (21 bp):
GATTTACTATTAAATTATCTT
Found at i:13375669 original size:66 final size:64
Alignment explanation
Indices: 13375248--13375706 Score: 214
Period size: 66 Copynumber: 7.0 Consensus size: 64
13375238 GTTATCAATA
* * * * * * * * * *
13375248 ATTTACTATAACATTATTAGTGATTTACTACTAAATTGTCAATAATTTACTATAAAATTATCAAT
1 ATTTACTATTATATTATTATTGATTTACTATTAAGTTAT-AATTATTTACTATTAAGTTAT-TAT
13375313 G
64 G
* ** ** * * *
13375314 ATTTACTA-TATACTATTA-TGCATTTGGTACCATGTTATCATTGATTTACAATTAAGTT-TTAG
1 ATTTACTATTATATTATTATTG-ATTTACTATTAAGTTATAATT-ATTTACTATTAAGTTATTA-
13375376 TG
63 TG
* * * * * * * * * *
13375378 ATTAACTACTAAATTATCATTGATTTA-TTTCTAAGTTATTTATGATTTGCTACTAAGTTTATAA
1 ATTTACTATTATATTATTATTGATTTACTAT-TAAGTTA-TAATTATTTACTATTAAG-TTATTA
*
13375442 TTT
63 -TG
* * * ** ** * * *
13375445 AATTACTATTAAACTAAAACAGATTTACTATTAAGTTAT-CTGTAATTTATTATTAAATT-TTCA
1 ATTTACTATTATATTATTATTGATTTACTATTAAGTTATAAT-T-ATTTACTATTAAGTTATT-A
13375508 TTG
63 -TG
* * * * ** *
13375511 ATTTACTATTAAATTATCAATGATTAACTATTAAGTTATAATTTATTTTTTATTAAGTTATCATT
1 ATTTACTATTATATTATTATTGATTTACTATTAAGTTATAA-TTATTTACTATTAAGTTATTA-T
13375576 G
64 G
* * *
13375577 ATTTACTACTATGA-TATT-TTGCATTTACAATTATGTTATAATTGATTTACTATTAAGTTATTA
1 ATTTACTATTAT-ATTATTATTG-ATTTACTATTAAGTTATAATT-ATTTACTATTAAGTTATTA
13375640 TG
63 TG
* * *
13375642 CATTTACTATTATATTGTTATTGATTTACTACTAAGTTATCAATTATTTACTATTAAATTATTAT
1 -ATTTACTATTATATTATTATTGATTTACTATTAAGTTAT-AATTATTTACTATTAAGTTATTAT
13375707 TGATATGTTA
Statistics
Matches: 294, Mismatches: 76, Indels: 46
0.71 0.18 0.11
Matches are distributed among these distances:
63 1 0.00
64 15 0.05
65 65 0.22
66 162 0.55
67 48 0.16
68 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (64 bp):
ATTTACTATTATATTATTATTGATTTACTATTAAGTTATAATTATTTACTATTAAGTTATTATG
Found at i:13375678 original size:44 final size:44
Alignment explanation
Indices: 13375511--13375710 Score: 170
Period size: 44 Copynumber: 4.5 Consensus size: 44
13375501 ATTTTCATTG
* * * * * * **
13375511 ATTTACTATTAAATTATCAATGATTAACTATTAAGTTATAATTT
1 ATTTACTATTATATTATTATTGATTTACTACTAAGTTATTATGC
** * * * *
13375555 ATTTTTTATTA-AGTTATCATTGATTTACTACTATGATATTTTGC
1 ATTTACTATTATA-TTATTATTGATTTACTACTAAGTTATTATGC
* * * *
13375599 ATTTACAATTATGTTATAATTGATTTACTATTAAGTTATTATGC
1 ATTTACTATTATATTATTATTGATTTACTACTAAGTTATTATGC
* * *
13375643 ATTTACTATTATATTGTTATTGATTTACTACTAAGTTATCAAT-T
1 ATTTACTATTATATTATTATTGATTTACTACTAAGTTAT-TATGC
*
13375687 ATTTACTATTAAATTATTATTGAT
1 ATTTACTATTATATTATTATTGAT
13375711 ATGTTATTAA
Statistics
Matches: 124, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
43 1 0.01
44 121 0.98
45 2 0.02
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (44 bp):
ATTTACTATTATATTATTATTGATTTACTACTAAGTTATTATGC
Found at i:13375722 original size:44 final size:44
Alignment explanation
Indices: 13375511--13375738 Score: 122
Period size: 44 Copynumber: 5.2 Consensus size: 44
13375501 ATTTTCATTG
* * * *
13375511 ATTTACTATTAAATTATCAATGAT-TAACTATTAAGTTAT-AATTT
1 ATTTACTATTAAATTATTATTGATAT-ACTACTAAGTTATCAA-TA
** * * * * * ** *
13375555 ATTTTTTATTAAGTTATCATTGATTTACTACTATGATAT-TTTGC
1 ATTTACTATTAAATTATTATTGATATACTACTAAGTTATCAAT-A
* ** * * * * *
13375599 ATTTACAATTATGTTATAATTGATTTACTATTAAGTTAT-TATGC
1 ATTTACTATTAAATTATTATTGATATACTACTAAGTTATCAAT-A
* * * *
13375643 ATTTACTATTATATTGTTATTGATTTACTACTAAGTTATCAATT
1 ATTTACTATTAAATTATTATTGATATACTACTAAGTTATCAATA
** * *
13375687 ATTTACTATTAAATTATTATTGATATGTTATTAAGTTATCACTA
1 ATTTACTATTAAATTATTATTGATATACTACTAAGTTATCAATA
13375731 ATTTACTA
1 ATTTACTA
13375739 CATAAAATTA
Statistics
Matches: 147, Mismatches: 34, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
43 1 0.01
44 143 0.97
45 3 0.02
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (44 bp):
ATTTACTATTAAATTATTATTGATATACTACTAAGTTATCAATA
Found at i:13375868 original size:22 final size:23
Alignment explanation
Indices: 13375818--13375869 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
13375808 ATTTTCAATT
* *
13375818 ATTAA-TTACTACTAAGTTCTAA
1 ATTAATTTACTACTAAATTATAA
*
13375840 ATT-ATTTACTACTAAATTAT-C
1 ATTAATTTACTACTAAATTATAA
13375861 ATTAATTTA
1 ATTAATTTA
13375870 TTATTAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTAATTTACTACTAAATTATAA
Found at i:13376214 original size:22 final size:22
Alignment explanation
Indices: 13376189--13376373 Score: 89
Period size: 22 Copynumber: 8.5 Consensus size: 22
13376179 ATTGAATCTT
13376189 ATTTACTATTAAATTATTATTA
1 ATTTACTATTAAATTATTATTA
* * * *
13376211 ATTTACAACTAAATCATCATTA
1 ATTTACTATTAAATTATTATTA
* *
13376233 TTTTACTATTAAGTT-TTCACTT-
1 ATTTACTATTAAATTATT-A-TTA
* **
13376255 ATTT-TTATTAAATTATCCTTA
1 ATTTACTATTAAATTATTATTA
**
13376276 ATTTACTATTGTATTATTA-TA
1 ATTTACTATTAAATTATTATTA
* * *
13376297 TATTTACAATT--ATGTATAAATA
1 -ATTTACTATTAAAT-TATTATTA
* *
13376319 ATTTACCATTAAGTTATTTATT-
1 ATTTACTATTAAATTA-TTATTA
* *
13376341 ATTTACTACTATATTATTATGT-
1 ATTTACTATTAAATTATTAT-TA
*
13376363 ATTTATTATTA
1 ATTTACTATTA
13376374 TGTTATCATT
Statistics
Matches: 119, Mismatches: 32, Indels: 24
0.68 0.18 0.14
Matches are distributed among these distances:
20 4 0.03
21 32 0.27
22 77 0.65
23 6 0.05
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.53
Consensus pattern (22 bp):
ATTTACTATTAAATTATTATTA
Found at i:13378878 original size:17 final size:17
Alignment explanation
Indices: 13378858--13378906 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
13378848 TTTAATATAG
13378858 TTTAATTTGATATAAAT
1 TTTAATTTGATATAAAT
*
13378875 TTT-ATTT-ATA-AATT
1 TTTAATTTGATATAAAT
*
13378889 TTTAA-TTGATTTAAAT
1 TTTAATTTGATATAAAT
13378905 TT
1 TT
13378907 AAATAACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
14 8 0.31
15 6 0.23
16 9 0.35
17 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (17 bp):
TTTAATTTGATATAAAT
Found at i:13379113 original size:153 final size:154
Alignment explanation
Indices: 13378897--13379181 Score: 475
Period size: 153 Copynumber: 1.9 Consensus size: 154
13378887 TTTTTAATTG
* *
13378897 ATTTAAATTTAAATAACTAACAAATAAAAAGCTATATTTTTAATGACAAATAATCTTTATTAAAT
1 ATTTAAATTTAAATAACTAACAAATAAAAAGCTATATATTTAATGACAAATAATCATTATTAAAT
* * *
13378962 AAATAAGA-AATGCTAGAAATTGAAATATAAATTTGTTATTTTTTAAAATTTATAAAGATATTTA
66 AAATAA-ATAATGCTAGAAATTGAAAAATAAATTTGTTATTTCTTAAAATTTATAAAAATATTTA
13379026 TGTTATTCATTTTTAACACTTTTAT
130 TGTTATTCATTTTTAACACTTTTAT
*
13379051 ATTTAAATTTAAATAACTAACTAAT-AAAAGCTATATATTTAATGACAAATAATCATTATTAAAT
1 ATTTAAATTTAAATAACTAACAAATAAAAAGCTATATATTTAATGACAAATAATCATTATTAAAT
* *
13379115 AAATAAATAATGCTAGAAATTTAAAAATAAATTTGTTATTTCTTAAAATTTGTAAAAATATTTAT
66 AAATAAATAATGCTAGAAATTGAAAAATAAATTTGTTATTTCTTAAAATTTATAAAAATATTTAT
13379180 GT
131 GT
13379182 CGTTTACTAT
Statistics
Matches: 122, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
152 1 0.01
153 97 0.80
154 24 0.20
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (154 bp):
ATTTAAATTTAAATAACTAACAAATAAAAAGCTATATATTTAATGACAAATAATCATTATTAAAT
AAATAAATAATGCTAGAAATTGAAAAATAAATTTGTTATTTCTTAAAATTTATAAAAATATTTAT
GTTATTCATTTTTAACACTTTTAT
Found at i:13382678 original size:20 final size:18
Alignment explanation
Indices: 13382627--13382680 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
13382617 GTCTGAAATT
13382627 GAGTTTTTTTTATTTTAAG
1 GAGTTTTTTTT-TTTTAAG
* **
13382646 CAGTTTTGATTTTTTGGAAG
1 GAGTTTT--TTTTTTTTAAG
13382666 GAGTTTTTTTTTTTT
1 GAGTTTTTTTTTTTT
13382681 TTTTTTTTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
18 6 0.22
19 6 0.22
20 11 0.41
21 4 0.15
ACGTcount: A:0.17, C:0.02, G:0.19, T:0.63
Consensus pattern (18 bp):
GAGTTTTTTTTTTTTAAG
Found at i:13385122 original size:12 final size:12
Alignment explanation
Indices: 13385115--13385144 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13385105 TTTTTATTTG
13385115 TATATTTATTCA
1 TATATTTATTCA
13385127 TATATTTATTCA
1 TATATTTATTCA
*
13385139 TTTATT
1 TATATT
13385145 GCATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (12 bp):
TATATTTATTCA
Found at i:13385462 original size:98 final size:99
Alignment explanation
Indices: 13385325--13385623 Score: 388
Period size: 100 Copynumber: 3.0 Consensus size: 99
13385315 AATTGTTTTT
* * * *
13385325 ATAATAATAAAATTTTCAATCCTACCAAACTATTGGAGGATTTAAATCTTGAATTAATTCTTATC
1 ATAATAATAAAATTTTTAATCCTACCAAACTATTGGAGGATTTAAATATTGAATTAAATCTTACC
13385390 -AACTATTGGAAGAATTAATGAATTTTTTTAAATA
66 AAACTATTGGAAGAATTAATGAATTTTTTTAAA-A
* * * *
13385424 ATAATAAT-AAATTTTTAATCCTACCATACTATTAGAGGATTTAAATATTTAATTAAGTCTTACC
1 ATAATAATAAAATTTTTAATCCTACCAAACTATTGGAGGATTTAAATATTGAATTAAATCTTACC
* * * *
13385488 AAAATATTAGAGGACTTAATGAATTTTTTGT-AAA
66 AAACTATTGGAAGAATTAATGAATTTTTT-TAAAA
** *
13385522 ATAATAATAAAATTTTTCAATCCTACCAAACTATTGGAGGATCAAAATTTTGAATTAAATCTTAC
1 ATAATAATAAAATTTTT-AATCCTACCAAACTATTGGAGGATTTAAATATTGAATTAAATCTTAC
* *
13385587 CAAACTATTGAAAGATTTAATGAATTTTCTTTAAAA
65 CAAACTATTGGAAGAATTAATGAATTTT-TTTAAAA
13385623 A
1 A
13385624 AATTTTATAA
Statistics
Matches: 171, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
98 58 0.34
99 42 0.25
100 65 0.38
101 6 0.04
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.38
Consensus pattern (99 bp):
ATAATAATAAAATTTTTAATCCTACCAAACTATTGGAGGATTTAAATATTGAATTAAATCTTACC
AAACTATTGGAAGAATTAATGAATTTTTTTAAAA
Found at i:13391758 original size:21 final size:20
Alignment explanation
Indices: 13391726--13391765 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
13391716 TTAAACTTTT
*
13391726 TTTAAAGTCCTCCAAGCATA
1 TTTAAAGACCTCCAAGCATA
13391746 TTTATAAGACCTCCAAGCAT
1 TTTA-AAGACCTCCAAGCAT
13391766 GATCTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (20 bp):
TTTAAAGACCTCCAAGCATA
Found at i:13393546 original size:96 final size:98
Alignment explanation
Indices: 13393440--13393735 Score: 345
Period size: 96 Copynumber: 3.0 Consensus size: 98
13393430 TTCATAGTAT
*
13393440 ATTTTTTTAATAATAATGAAATGTTTAATCCTACCAAACTATTAGAA-GATTTAAATCTTGAATT
1 ATTTTTTTAATAATAAT-AAATTTTTAATCCTACCAAACTATTAGAAGGATTTAAATCTTGAATT
*
13393504 AAGTTTTACCAAACTATTGA-AAGACTTAAT-AA
65 AAGTATTACCAAACTATTGAGAAGACTTAATGAA
13393536 ATTTTTTTAATAATAATAAAATTTTTAATCCTACCAAACTATTA-AAGGATTTAAATCTTGAATT
1 ATTTTTTTAATAATAAT-AAATTTTTAATCCTACCAAACTATTAGAAGGATTTAAATCTTGAATT
* * *
13393600 AAGTCTTACCAAAATATT-AGAGGACTTAATGAA
65 AAGTATTACCAAACTATTGAGAAGACTTAATGAA
* **
13393633 TTTTTTTTAAAAGAATAATAATAAATATTTTCAATCCTACCAAACTATT-GAAGGATCAAAATCT
1 ATTTTTTT-----AATAATAATAAAT-TTTT-AATCCTACCAAACTATTAGAAGGATTTAAATCT
* * * * *
13393697 TGCATTAAATATTATCAAACTATTG-GAAAATTTAATGAA
59 TGAATTAAGTATTACCAAACTATTGAGAAGACTTAATGAA
13393736 CTTTCTCAAA
Statistics
Matches: 172, Mismatches: 16, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
95 3 0.02
96 84 0.49
97 9 0.05
101 4 0.02
102 13 0.08
103 59 0.34
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (98 bp):
ATTTTTTTAATAATAATAAATTTTTAATCCTACCAAACTATTAGAAGGATTTAAATCTTGAATTA
AGTATTACCAAACTATTGAGAAGACTTAATGAA
Found at i:13394371 original size:23 final size:24
Alignment explanation
Indices: 13394327--13394371 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
13394317 TTGGGTGGGG
**
13394327 TTTGGTTCGGTTTGGGTTTAGGGA
1 TTTGGTTCAATTTGGGTTTAGGGA
13394351 TTTGGTTCAATTT-GGTTTAGG
1 TTTGGTTCAATTTGGGTTTAGG
13394372 TTGGTTTAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (24 bp):
TTTGGTTCAATTTGGGTTTAGGGA
Found at i:13394515 original size:29 final size:27
Alignment explanation
Indices: 13394466--13394531 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 27
13394456 TAGGTTTTGT
*
13394466 TTAGGGTTTTAAGTTGGTTTAGGGCTTGG-
1 TTAGGG-TTTAAGTTGATTTA-GG-TTGGA
*
13394495 TTAGGGTTTAGGATTGATTTAGGTTGGA
1 TTAGGGTTTAAG-TTGATTTAGGTTGGA
13394523 TTAGGGTTT
1 TTAGGGTTT
13394532 GGTTAGGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 4 0.12
28 16 0.48
29 13 0.39
ACGTcount: A:0.17, C:0.02, G:0.36, T:0.45
Consensus pattern (27 bp):
TTAGGGTTTAAGTTGATTTAGGTTGGA
Found at i:13394534 original size:39 final size:39
Alignment explanation
Indices: 13394473--13394556 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
13394463 TGTTTAGGGT
* *
13394473 TTTAAGTTGGTTTAGGGCTTGGTTAGGGTTTAGGATT-G
1 TTTAGGTTGGATTAGGGCTTGGTTAGGGTTTAGGATTAG
* *
13394511 ATTTAGGTTGGATTAGGGTTTGGTTAGGGTTTTGGATTAG
1 -TTTAGGTTGGATTAGGGCTTGGTTAGGGTTTAGGATTAG
13394551 TTTAGG
1 TTTAGG
13394557 GTTTTAGGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.98
40 1 0.03
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.45
Consensus pattern (39 bp):
TTTAGGTTGGATTAGGGCTTGGTTAGGGTTTAGGATTAG
Found at i:13394544 original size:12 final size:12
Alignment explanation
Indices: 13394518--13394550 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13394508 TTGATTTAGG
13394518 TTGGATTAGGGT
1 TTGGATTAGGGT
13394530 TTGG-TTAGGGTT
1 TTGGATTAGGG-T
13394542 TTGGATTAG
1 TTGGATTAG
13394551 TTTAGGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 6 0.32
12 9 0.47
13 4 0.21
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (12 bp):
TTGGATTAGGGT
Found at i:13394603 original size:20 final size:20
Alignment explanation
Indices: 13394581--13394688 Score: 94
Period size: 21 Copynumber: 5.2 Consensus size: 20
13394571 GTTGGTTTGA
*
13394581 GTTAGGGTTTAAAGGTTTAA
1 GTTAGGGTTTAAAGGTTTAG
13394601 GTTAGGGGTTTAAA-GTTTAGGTTG
1 GTTA-GGGTTTAAAGGTTTA----G
* * *
13394625 GTTTAGGGTCTAAGGGTTTTG
1 G-TTAGGGTTTAAAGGTTTAG
13394646 GTTTAGGGTTTAAAGGTTTAG
1 G-TTAGGGTTTAAAGGTTTAG
*
13394667 GTTAGGATTTAAAGGTTT-G
1 GTTAGGGTTTAAAGGTTTAG
13394686 GTT
1 GTT
13394689 TGGGGCTTGG
Statistics
Matches: 73, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.05
20 25 0.34
21 29 0.40
24 8 0.11
25 7 0.10
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (20 bp):
GTTAGGGTTTAAAGGTTTAG
Found at i:13394611 original size:21 final size:20
Alignment explanation
Indices: 13394574--13394684 Score: 80
Period size: 20 Copynumber: 5.2 Consensus size: 20
13394564 GGTTTAGGTT
*
13394574 GGTTTGAGTTAGGGTTTAAA
1 GGTTTAAGTTAGGGTTTAAA
13394594 GGTTTAAGTTAGGGGTTTAAA
1 GGTTTAAGTTA-GGGTTTAAA
* * *
13394615 -GTTTAGGTTGGTTTAGGGTCTAAG
1 GGTTTA----AG-TTAGGGTTTAAA
**
13394639 GGTTTTGGTTTAGGGTTTAAA
1 GGTTTAAG-TTAGGGTTTAAA
* *
13394660 GGTTTAGGTTAGGATTTAAA
1 GGTTTAAGTTAGGGTTTAAA
13394680 GGTTT
1 GGTTT
13394685 GGTTTGGGGC
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
20 31 0.41
21 29 0.39
24 8 0.11
25 7 0.09
ACGTcount: A:0.23, C:0.01, G:0.34, T:0.42
Consensus pattern (20 bp):
GGTTTAAGTTAGGGTTTAAA
Found at i:13394631 original size:45 final size:46
Alignment explanation
Indices: 13394549--13394669 Score: 120
Period size: 45 Copynumber: 2.5 Consensus size: 46
13394539 GTTTTGGATT
* * *
13394549 AGTTTAGGGTTTTAGGGTTTAGGTTGGTTTGAGTTAGGGTTTAAAGGTTTA
1 AGTTTAGGGTTTAAAGGTTTAGGTTGG--T---TTAGGGTCTAAAGGTTTA
* *
13394600 AG-TTAGGGGTTTAAA-GTTTAGGTTGGTTTAGGGTCTAAGGGTTTT
1 AGTTTA-GGGTTTAAAGGTTTAGGTTGGTTTAGGGTCTAAAGGTTTA
*
13394645 GGTTTAGGGTTTAAAGGTTTAGGTT
1 AGTTTAGGGTTTAAAGGTTTAGGTT
13394670 AGGATTTAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
45 25 0.41
46 12 0.20
48 1 0.02
50 14 0.23
51 9 0.15
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.44
Consensus pattern (46 bp):
AGTTTAGGGTTTAAAGGTTTAGGTTGGTTTAGGGTCTAAAGGTTTA
Found at i:13394753 original size:20 final size:21
Alignment explanation
Indices: 13394730--13394802 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 21
13394720 TGTGGGTTGG
13394730 GTTTAGGGTTTGA-GGTTTAA
1 GTTTAGGGTTTGAGGGTTTAA
* *
13394750 GTTTAAGGTTT-ATGGGTTT-C
1 GTTTAGGGTTTGA-GGGTTTAA
*
13394770 GTTT-GGGATTTAAGGGTTTAA
1 GTTTAGGG-TTTGAGGGTTTAA
13394791 GTTTAGGGTTTG
1 GTTTAGGGTTTG
13394803 CCATGAATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
19 3 0.07
20 23 0.55
21 13 0.31
22 3 0.07
ACGTcount: A:0.18, C:0.01, G:0.34, T:0.47
Consensus pattern (21 bp):
GTTTAGGGTTTGAGGGTTTAA
Found at i:13396678 original size:143 final size:143
Alignment explanation
Indices: 13396444--13396790 Score: 327
Period size: 143 Copynumber: 2.4 Consensus size: 143
13396434 CCTAAAATGC
* * *
13396444 ATTTTGGTAATTTGAATCCTTCT-GAGGTGTAATC-AGGTTTTTAATGCACTAAAATTCATAAAG
1 ATTTTGGTAATTT-AATCCTTCTCGAGGTGCAATCAAGGTTTTAAATGCACTAAAAATCATAAAG
* * * * *
13396507 TAATGTTTAATCATGAAGTGGAACGTTTTGTGAA-AAATCAACCTCAAAAAGATTAAATTATGAA
65 TAATGATAAATCATGAAGTGGAACGTTTT-TCAACAAACCAACCTCAAAAAGATTAAATTACGAA
13396571 AATACC-CTTAAAGGAT
129 AA-ACCTC-TAAAGGAT
*
13396587 ATTTTGGTAATTTAAGT-CTTCTCGAGGTGCAATCAAGGTTTTAAATGCATTAAAAATCATGAAA
1 ATTTTGGTAATTTAA-TCCTTCTCGAGGTGCAATCAAGGTTTTAAATGCACTAAAAATCAT-AAA
* ** * ** *
13396651 -TTAT-ATAAATACATGATTTGG-AGGTTTTTCAACTAAACCAACCTTGAAAAGATTGAATTACG
64 GTAATGATAAAT-CATGAAGTGGAACGTTTTTCAAC-AAACCAACCTCAAAAAGATTAAATTACG
*
13396713 AAAAACCTCTAAAGGGT
127 AAAAACCTCTAAAGGAT
* * * * * * *
13396730 ATTTTAGTAATTTTATCCTTTTCAAGGTGCAATCATGACTTTT-AATGCA-TCAAAATCATAA
1 ATTTTGGTAATTTAATCCTTCTCGAGGTGCAATCAAG-GTTTTAAATGCACTAAAAATCATAA
13396791 TATTATTAAC
Statistics
Matches: 170, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
141 2 0.01
142 20 0.12
143 80 0.47
144 65 0.38
145 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (143 bp):
ATTTTGGTAATTTAATCCTTCTCGAGGTGCAATCAAGGTTTTAAATGCACTAAAAATCATAAAGT
AATGATAAATCATGAAGTGGAACGTTTTTCAACAAACCAACCTCAAAAAGATTAAATTACGAAAA
ACCTCTAAAGGAT
Found at i:13399758 original size:37 final size:35
Alignment explanation
Indices: 13399686--13399765 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 35
13399676 AGATTCATGT
*
13399686 TTTGAAAATTCACATCTAAAAATTAAAGATCCATA
1 TTTGAAAATTCACATCTAAAAATCAAAGATCCATA
* * *
13399721 TTTGAAGAGATTCACATCTAAAAGTCAAATATTCATA
1 TTTGAA-A-ATTCACATCTAAAAATCAAAGATCCATA
*
13399758 TTCGAAAA
1 TTTGAAAA
13399766 AAAAATCTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
35 7 0.18
36 2 0.05
37 29 0.76
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (35 bp):
TTTGAAAATTCACATCTAAAAATCAAAGATCCATA
Found at i:13399873 original size:45 final size:45
Alignment explanation
Indices: 13399824--13400215 Score: 371
Period size: 45 Copynumber: 8.7 Consensus size: 45
13399814 TTTTTCAAAA
* ** *
13399824 ATTCACATCTAAAAATCAAAGATTCATATTTGAAAATTTTTGGAG
1 ATTCACATCTAAAAATCAAAGATTCACATTTGAAAAAGTTTAGAG
* ** * *
13399869 ATTCACATTTTGAAATCAAAGATTCACATCT-AAAAATTTTAAGAG
1 ATTCACATCTAAAAATCAAAGATTCACATTTGAAAAAGTTT-AGAG
* * *
13399914 ATTCACATATAATAATCATAGATTCACATTT-AAAAAGTTT-GAAG
1 ATTCACATCTAAAAATCAAAGATTCACATTTGAAAAAGTTTAG-AG
* * * * * *
13399958 GTTTATATAC-AAAAATCAAAGATTTACATTTCAAAAACTTTAGAG
1 ATTCACAT-CTAAAAATCAAAGATTCACATTTGAAAAAGTTTAGAG
* * * *
13400003 ATTCACATCGAAATATCAAA-ATTTTACATTTGAAAAAGTTTAGAA
1 ATTCACATCTAAAAATCAAAGA-TTCACATTTGAAAAAGTTTAGAG
* * * *
13400048 ATTCACATCTAAAAATTAAAGATTCATATTTAAAAAAAGTTTAAAG
1 ATTCACATCTAAAAATCAAAGATTCACATTT-GAAAAAGTTTAGAG
* * *
13400094 ATTCATATTTAAAAATCAAAGATTCACATTTGAAAATAGTTTGGAG
1 ATTCACATCTAAAAATCAAAGATTCACATTTGAAAA-AGTTTAGAG
* * * *
13400140 ATTCACATCTAAAAATAAAATATTCTCATTTGAAAAAGTTTAAAG
1 ATTCACATCTAAAAATCAAAGATTCACATTTGAAAAAGTTTAGAG
* * *
13400185 ATTCACATTTAAAAACCAAATATTCACATTT
1 ATTCACATCTAAAAATCAAAGATTCACATTT
13400216 AGAGTTCAGC
Statistics
Matches: 282, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
43 1 0.00
44 35 0.12
45 168 0.60
46 78 0.28
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.34
Consensus pattern (45 bp):
ATTCACATCTAAAAATCAAAGATTCACATTTGAAAAAGTTTAGAG
Found at i:13400085 original size:24 final size:25
Alignment explanation
Indices: 13400058--13400108 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
13400048 ATTCACATCT
13400058 AAAA-ATTAAAGATTCATATTTAAA
1 AAAAGATTAAAGATTCATATTTAAA
*
13400082 AAAAGTTTAAAGATTCATATTTAAA
1 AAAAGATTAAAGATTCATATTTAAA
13400107 AA
1 AA
13400109 TCAAAGATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
AAAAGATTAAAGATTCATATTTAAA
Found at i:13400214 original size:21 final size:21
Alignment explanation
Indices: 13400140--13400216 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
13400130 TAGTTTGGAG
*
13400140 ATTCACATCTAAAAATAAAAT
1 ATTCACATTTAAAAATAAAAT
* * *
13400161 ATTCTCATTTGAAAAAGTTTAAAG
1 ATTCACATTT-AAAAA--TAAAAT
**
13400185 ATTCACATTTAAAAACCAAAT
1 ATTCACATTTAAAAATAAAAT
13400206 ATTCACATTTA
1 ATTCACATTTA
13400217 GAGTTCAGCA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
21 22 0.49
22 5 0.11
23 5 0.11
24 13 0.29
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (21 bp):
ATTCACATTTAAAAATAAAAT
Found at i:13400708 original size:247 final size:247
Alignment explanation
Indices: 13400265--13400762 Score: 951
Period size: 247 Copynumber: 2.0 Consensus size: 247
13400255 CTACCAAAAA
13400265 TTTTGGCAGATAAAAGCTAAAAATCCATCGATAATAGCATTAGTGATTGTTTTAGCGATAGAAAA
1 TTTTGGCAGATAAAAGCTAAAAATCCATCGATAATAGCATTAGTGATTGTTTTAGCGATAGAAAA
13400330 ATTCCATCGGGGCTAGCTATGTCGGTAATGCTATTCCATTGGTAATGGTTGAAACCTATTGGTAA
66 ATTCCATCGGGGCTAGCTATGTCGGTAATGCTATTCCATTGGTAATGGTTGAAACCTATTGGTAA
*
13400395 TTACCGATGGAAAATCCATCAATATATTTCATCAATAATTATCAACGGGTTATTACCAATGGTTT
131 TTACCGATGGAAAATCCATCAATAAATTTCATCAATAATTATCAACGGGTTATTACCAATGGTTT
13400460 TACATAATTATTTATGAAATTTTTCATCGATAATTTTGTCGATAAACAATTT
196 TACATAATTATTTATGAAATTTTTCATCGATAATTTTGTCGATAAACAATTT
* *
13400512 TTTTGGTAGATAAAAGCTAAAAATCCATCGATAATAGCATTAGTGATTGTTTTAGCGGTAGAAAA
1 TTTTGGCAGATAAAAGCTAAAAATCCATCGATAATAGCATTAGTGATTGTTTTAGCGATAGAAAA
13400577 ATTCCATCGGGGCTAGCTATGTCGGTAATGCTATTCCATTGGTAATGGTTGAAACCTATTGGTAA
66 ATTCCATCGGGGCTAGCTATGTCGGTAATGCTATTCCATTGGTAATGGTTGAAACCTATTGGTAA
*
13400642 TTACCGATGGAAAATCCATCAATAAATTTCATCAATAATTATCAATGGGTTATTACCAATGGTTT
131 TTACCGATGGAAAATCCATCAATAAATTTCATCAATAATTATCAACGGGTTATTACCAATGGTTT
*
13400707 TACATAATTATTTATGAAATTTTTCATCGATAATTTTGTCGATAAACGATTT
196 TACATAATTATTTATGAAATTTTTCATCGATAATTTTGTCGATAAACAATTT
13400759 TTTT
1 TTTT
13400763 TGTCGGTAAA
Statistics
Matches: 246, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
247 246 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (247 bp):
TTTTGGCAGATAAAAGCTAAAAATCCATCGATAATAGCATTAGTGATTGTTTTAGCGATAGAAAA
ATTCCATCGGGGCTAGCTATGTCGGTAATGCTATTCCATTGGTAATGGTTGAAACCTATTGGTAA
TTACCGATGGAAAATCCATCAATAAATTTCATCAATAATTATCAACGGGTTATTACCAATGGTTT
TACATAATTATTTATGAAATTTTTCATCGATAATTTTGTCGATAAACAATTT
Found at i:13404452 original size:24 final size:26
Alignment explanation
Indices: 13404425--13404477 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
13404415 AAACCACAAT
*
13404425 ATTTCAAT-AATTAGT-AATATATAA
1 ATTTCAATAAACTAGTAAATATATAA
* *
13404449 ATTTCACTAAACTATTAAATATATAA
1 ATTTCAATAAACTAGTAAATATATAA
13404475 ATT
1 ATT
13404478 ACTTCAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.29
25 5 0.21
26 12 0.50
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (26 bp):
ATTTCAATAAACTAGTAAATATATAA
Found at i:13404508 original size:38 final size:37
Alignment explanation
Indices: 13404466--13404553 Score: 115
Period size: 38 Copynumber: 2.4 Consensus size: 37
13404456 TAAACTATTA
13404466 AATATATAAATTACTTCAAAACAA-ATATACATCTTAAT
1 AATATATAAATTACTTCAAAACAATATAT-CAT-TTAAT
* * * *
13404504 AATATCTAAATTATTTCAAAACAATATATTATTTAGT
1 AATATATAAATTACTTCAAAACAATATATCATTTAAT
13404541 AATATATAAATTA
1 AATATATAAATTA
13404554 ATAACCTTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
37 16 0.36
38 24 0.55
39 4 0.09
ACGTcount: A:0.51, C:0.09, G:0.01, T:0.39
Consensus pattern (37 bp):
AATATATAAATTACTTCAAAACAATATATCATTTAAT
Found at i:13404544 original size:37 final size:38
Alignment explanation
Indices: 13404466--13404553 Score: 117
Period size: 37 Copynumber: 2.3 Consensus size: 38
13404456 TAAACTATTA
13404466 AATATATAAATTACTTCAAAACAAATATACATCTTAAT
1 AATATATAAATTACTTCAAAACAAATATACATCTTAAT
* * * *
13404504 AATATCTAAATTATTTCAAAAC-AATATATTAT-TTAGT
1 AATATATAAATTACTTCAAAACAAATATA-CATCTTAAT
13404541 AATATATAAATTA
1 AATATATAAATTA
13404554 ATAACCTTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
37 22 0.50
38 22 0.50
ACGTcount: A:0.51, C:0.09, G:0.01, T:0.39
Consensus pattern (38 bp):
AATATATAAATTACTTCAAAACAAATATACATCTTAAT
Found at i:13404970 original size:59 final size:59
Alignment explanation
Indices: 13404863--13405042 Score: 224
Period size: 59 Copynumber: 3.1 Consensus size: 59
13404853 ATATACATAA
* * * * *
13404863 AAATATATAACCAAC-AAATTTCAACAAATAT-ATAACAAAAACCCAAACAAATTTCAAC
1 AAATAAATAACCAACAAAAATTAAACAAAT-TGGTAACAAAAACCTAAACAAATTTCAAC
*
13404921 AAATATAA-AACCAACAAAAACTT-AACAAATTGGTAACTAAAACCTAAACAAATTTCAAC
1 AAATA-AATAACCAACAAAAA-TTAAACAAATTGGTAACAAAAACCTAAACAAATTTCAAC
* * *
13404980 AAATAAATAACCAACAAAAATTAAACACATTGGTAACCAAAACCTATACAAATTTCAAC
1 AAATAAATAACCAACAAAAATTAAACAAATTGGTAACAAAAACCTAAACAAATTTCAAC
13405039 AAAT
1 AAAT
13405043 TTATAATTAA
Statistics
Matches: 108, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
58 17 0.16
59 89 0.82
60 2 0.02
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (59 bp):
AAATAAATAACCAACAAAAATTAAACAAATTGGTAACAAAAACCTAAACAAATTTCAAC
Found at i:13405420 original size:14 final size:15
Alignment explanation
Indices: 13405394--13405434 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
13405384 TTCTTGTCGA
13405394 TAATGTAAAATTTTT
1 TAATGTAAAATTTTT
*
13405409 TAATGTAAATTTTTT
1 TAATGTAAAATTTTT
**
13405424 TTTTGTAAAAT
1 TAATGTAAAAT
13405435 ATTTGTTGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (15 bp):
TAATGTAAAATTTTT
Found at i:13405922 original size:16 final size:16
Alignment explanation
Indices: 13405872--13405922 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
13405862 ATGAATGTGC
13405872 AAAATTTCTTACTAGT
1 AAAATTTCTTACTAGT
* * * * *
13405888 AAACTTTGTTTCCAAT
1 AAAATTTCTTACTAGT
13405904 AAAATTTCTTACTAGT
1 AAAATTTCTTACTAGT
13405920 AAA
1 AAA
13405923 CCTTCATTCC
Statistics
Matches: 25, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAATTTCTTACTAGT
Found at i:13405933 original size:32 final size:32
Alignment explanation
Indices: 13405872--13405936 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
13405862 ATGAATGTGC
* **
13405872 AAAATTTCTTACTAGTAAACTTTGTTTCCAAT
1 AAAATTTCTTACTAGTAAACCTTCATTCCAAT
13405904 AAAATTTCTTACTAGTAAACCTTCATTCCAAT
1 AAAATTTCTTACTAGTAAACCTTCATTCCAAT
13405936 A
1 A
13405937 TGTAAATGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (32 bp):
AAAATTTCTTACTAGTAAACCTTCATTCCAAT
Found at i:13407201 original size:22 final size:23
Alignment explanation
Indices: 13407159--13407204 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
13407149 TAAAAATGGA
*
13407159 ATTATGATTTTTTATTTTTTTTT
1 ATTATGATTTTTTATTATTTTTT
13407182 ATTA-GATTTTTT-TTAATTTTTT
1 ATTATGATTTTTTATT-ATTTTTT
13407204 A
1 A
13407205 AAATTTTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 15 0.71
23 4 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (23 bp):
ATTATGATTTTTTATTATTTTTT
Found at i:13413033 original size:19 final size:18
Alignment explanation
Indices: 13413002--13413037 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
13412992 TATTTTTTCA
13413002 TTTTATTTGTTATTTGTT
1 TTTTATTTGTTATTTGTT
*
13413020 TTTTTTTTGTTTATTTGT
1 TTTTATTTG-TTATTTGT
13413038 GAATTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.08, C:0.00, G:0.11, T:0.81
Consensus pattern (18 bp):
TTTTATTTGTTATTTGTT
Found at i:13415101 original size:16 final size:16
Alignment explanation
Indices: 13415080--13415134 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
13415070 ACCAATATTA
13415080 TATTTGCATGATAATT
1 TATTTGCATGATAATT
* * *
13415096 TATTTGCTTAATATTT
1 TATTTGCATGATAATT
*
13415112 TATTTGCATGACTAATA
1 TATTTGCATGA-TAATT
13415129 TATTTG
1 TATTTG
13415135 TGTGACTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 22 0.71
17 9 0.29
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.53
Consensus pattern (16 bp):
TATTTGCATGATAATT
Found at i:13415109 original size:32 final size:33
Alignment explanation
Indices: 13415073--13415134 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
13415063 TTGTATAACC
*
13415073 AATATTATATTTGCATGA-TAATTTATTTGCTT
1 AATATTATATTTGCATGACTAATATATTTGCTT
*
13415105 AATATTTTATTTGCATGACTAATATATTTG
1 AATATTATATTTGCATGACTAATATATTTG
13415135 TGTGACTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (33 bp):
AATATTATATTTGCATGACTAATATATTTGCTT
Found at i:13415127 original size:20 final size:20
Alignment explanation
Indices: 13415104--13415214 Score: 77
Period size: 20 Copynumber: 5.7 Consensus size: 20
13415094 TTTATTTGCT
*
13415104 TAATATTTTATTTGCATGAC
1 TAATAATTTATTTGCATGAC
**
13415124 TAAT-A--TATTTGTGTGAC
1 TAATAATTTATTTGCATGAC
* *
13415141 TTATTAATATATTTGCATGAC
1 -TAATAATTTATTTGCATGAC
* *
13415162 TATTAATTTATTTGCAT-AG
1 TAATAATTTATTTGCATGAC
* *
13415181 TTATCAATTTATTTGCATGAT
1 TAAT-AATTTATTTGCATGAC
* *
13415202 TATTAATTAATTT
1 TAATAATTTATTT
13415215 ATTTGTGTGA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
17 10 0.14
18 3 0.04
19 4 0.06
20 41 0.58
21 13 0.18
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.51
Consensus pattern (20 bp):
TAATAATTTATTTGCATGAC
Found at i:13415150 original size:21 final size:20
Alignment explanation
Indices: 13415112--13415208 Score: 85
Period size: 20 Copynumber: 5.0 Consensus size: 20
13415102 CTTAATATTT
13415112 TATTTGCATGAC---TAATA
1 TATTTGCATGACTATTAATA
**
13415129 TATTTGTGTGACTTATTAATA
1 TATTTGCATGAC-TATTAATA
*
13415150 TATTTGCATGACTATTAATT
1 TATTTGCATGACTATTAATA
* * *
13415170 TATTTGCAT-AGTTATCAATT
1 TATTTGCATGA-CTATTAATA
*
13415190 TATTTGCATGATTATTAAT
1 TATTTGCATGACTATTAAT
13415209 TAATTTATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
17 10 0.15
19 1 0.02
20 39 0.59
21 16 0.24
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.49
Consensus pattern (20 bp):
TATTTGCATGACTATTAATA
Found at i:13415259 original size:21 final size:20
Alignment explanation
Indices: 13415224--13415530 Score: 203
Period size: 21 Copynumber: 15.4 Consensus size: 20
13415214 TATTTGTGTG
*
13415224 ATTGCATGATTATATATTTA
1 ATTGCATGTTTATATATTTA
13415244 ATTGCATGTTT-TATATTGTCA
1 ATTGCATGTTTATATATT-T-A
* *
13415265 ATTGCTTGATTATATATTTA
1 ATTGCATGTTTATATATTTA
*
13415285 GTTGCATGTTT-TATATTGTTA
1 ATTGCATGTTTATATA-T-TTA
* **
13415306 ATTGCATGATTATATGGTTA
1 ATTGCATGTTTATATATTTA
* *
13415326 GTTGCAAGTTT-TATATTATTA
1 ATTGCATGTTTATATA-T-TTA
13415347 ATTGCATG---ATATATTTA
1 ATTGCATGTTTATATATTTA
*
13415364 TTTGCATGTTT-TATATTGTTA
1 ATTGCATGTTTATATA-T-TTA
* *
13415385 ATTGCATGATAATATATTTA
1 ATTGCATGTTTATATATTTA
*
13415405 ATTGCTTGATTTATATATTTA
1 ATTGCATG-TTTATATATTTA
*
13415426 ATTGCATG---AT-CA--TA
1 ATTGCATGTTTATATATTTA
*
13415440 ATTGCATGTTT-TACATTGTTA
1 ATTGCATGTTTATATA-T-TTA
* *
13415461 ATTGCATGATTAGATATTTA
1 ATTGCATGTTTATATATTTA
* *
13415481 ATGGCATGTTT-TACATTGTTA
1 ATTGCATGTTTATATA-T-TTA
* *
13415502 ATTGCATGATTATATATTTG
1 ATTGCATGTTTATATATTTA
13415522 ATTGCATGT
1 ATTGCATGT
13415531 CTATTTGCAT
Statistics
Matches: 221, Mismatches: 38, Indels: 56
0.70 0.12 0.18
Matches are distributed among these distances:
14 10 0.05
16 2 0.01
17 14 0.06
18 1 0.00
19 23 0.10
20 66 0.30
21 87 0.39
22 18 0.08
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (20 bp):
ATTGCATGTTTATATATTTA
Found at i:13415269 original size:41 final size:41
Alignment explanation
Indices: 13415224--13415530 Score: 373
Period size: 41 Copynumber: 7.7 Consensus size: 41
13415214 TATTTGTGTG
*
13415224 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTCA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
* *
13415265 ATTGCTTGATTATATATTTAGTTGCATGTTTTATATTGTTA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
** * * *
13415306 ATTGCATGATTATATGGTTAGTTGCAAGTTTTATATTATTA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
*
13415347 ATTGCATG---ATATATTTATTTGCATGTTTTATATTGTTA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
* * *
13415385 ATTGCATGATAATATATTTAATTGCTTGATTTATATAT-TTA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATAT-TGTTA
* *
13415426 ATTGCATG---AT-CA--TAATTGCATGTTTTACATTGTTA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
* * *
13415461 ATTGCATGATTAGATATTTAATGGCATGTTTTACATTGTTA
1 ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
*
13415502 ATTGCATGATTATATATTTGATTGCATGT
1 ATTGCATGATTATATATTTAATTGCATGT
13415531 CTATTTGCAT
Statistics
Matches: 229, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
34 1 0.00
35 26 0.11
37 1 0.00
38 36 0.16
39 1 0.00
41 163 0.71
42 1 0.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (41 bp):
ATTGCATGATTATATATTTAATTGCATGTTTTATATTGTTA
Found at i:13415600 original size:32 final size:32
Alignment explanation
Indices: 13415539--13415600 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
13415529 GTCTATTTGC
* * **
13415539 ATGATTATGAATTTCTTTATTTGTGTGATTAT
1 ATGATTATGAATATATTTATTTGCATGATTAT
*
13415571 ATGATTATTAATATATTTATTTGCATGATT
1 ATGATTATGAATATATTTATTTGCATGATT
13415601 TTGTATTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.55
Consensus pattern (32 bp):
ATGATTATGAATATATTTATTTGCATGATTAT
Found at i:13415626 original size:19 final size:20
Alignment explanation
Indices: 13415583--13415631 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
13415573 GATTATTAAT
*
13415583 ATATTTATTTGCATGATTTTG
1 ATATTTA-TTGCATGATTATG
13415604 -TATTTATTGCATGA-TATG
1 ATATTTATTGCATGATTATG
13415622 ATATTATATT
1 ATATT-TATT
13415632 AATTTTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 3 0.12
19 12 0.48
20 10 0.40
ACGTcount: A:0.29, C:0.04, G:0.12, T:0.55
Consensus pattern (20 bp):
ATATTTATTGCATGATTATG
Found at i:13422243 original size:1 final size:1
Alignment explanation
Indices: 13422237--13422310 Score: 58
Period size: 1 Copynumber: 74.0 Consensus size: 1
13422227 AAGAGATGTT
** * * * * * * *
13422237 AAAAAAAAAAGCAAAACAAAATAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
13422302 AAAGAAAAA
1 AAAAAAAAA
13422311 GAAAGAAGGA
Statistics
Matches: 54, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.86, C:0.03, G:0.09, T:0.01
Consensus pattern (1 bp):
A
Found at i:13422262 original size:18 final size:15
Alignment explanation
Indices: 13422237--13422317 Score: 90
Period size: 17 Copynumber: 4.9 Consensus size: 15
13422227 AAGAGATGTT
13422237 AAAAAAAAAAGCAAAA
1 AAAAAAAAAAG-AAAA
13422253 CAAAATAAAAAAGAAAA
1 -AAAA-AAAAAAGAAAA
13422270 AAAAAAAAAAGAAAGAA
1 AAAAAAAAAAG-AA-AA
13422287 AAAAAAAAAAGAAAGA
1 AAAAAAAAAAGAAA-A
13422303 AAGAAAAAGAAAGAA
1 AA-AAAAA-AAAGAA
13422318 GGAAAACTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.14
16 11 0.19
17 26 0.45
18 13 0.22
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.01
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:13422278 original size:32 final size:32
Alignment explanation
Indices: 13422237--13422323 Score: 104
Period size: 32 Copynumber: 2.6 Consensus size: 32
13422227 AAGAGATGTT
*
13422237 AAAAAAAAAAGCAAA-ACAAAATAAAAAAGAAAA
1 AAAAAAAAAAG-AAAGA-AAAAAAAAAAAGAAAA
13422270 AAAAAAAAAAGAAAGAAAAAAAAAAAAGAAAGA
1 AAAAAAAAAAGAAAGAAAAAAAAAAAAGAAA-A
*
13422303 AAGAAAAAGAAAGAAGGAAAA
1 AA-AAAAA-AAAGAAAGAAAA
13422324 CTTAAACTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
32 17 0.35
33 15 0.31
34 5 0.10
35 11 0.23
ACGTcount: A:0.84, C:0.02, G:0.13, T:0.01
Consensus pattern (32 bp):
AAAAAAAAAAGAAAGAAAAAAAAAAAAGAAAA
Found at i:13422288 original size:17 final size:17
Alignment explanation
Indices: 13422237--13422323 Score: 99
Period size: 18 Copynumber: 5.1 Consensus size: 17
13422227 AAGAGATGTT
13422237 AAAAAAAAAAGCAAA-ACA
1 AAAAAAAAAAG-AAAGA-A
*
13422255 AAATAAAAAAG-AA-AA
1 AAAAAAAAAAGAAAGAA
13422270 AAAAAAAAAAGAAAGAA
1 AAAAAAAAAAGAAAGAA
13422287 AAAAAAAAAAGAAAGAA
1 AAAAAAAAAAGAAAGAA
* *
13422304 AGAAAAAGAAAGAAGGAA
1 A-AAAAAAAAAGAAAGAA
13422322 AA
1 AA
13422324 CTTAAACTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
15 11 0.18
16 5 0.08
17 21 0.34
18 25 0.40
ACGTcount: A:0.84, C:0.02, G:0.13, T:0.01
Consensus pattern (17 bp):
AAAAAAAAAAGAAAGAA
Found at i:13422315 original size:4 final size:4
Alignment explanation
Indices: 13422262--13422322 Score: 53
Period size: 4 Copynumber: 16.8 Consensus size: 4
13422252 ACAAAATAAA
* *
13422262 AAAG AAA- AAAA AAAA AAAG AAAG AAA- AAA- AAA- AAAG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
*
13422306 -AA- AAAG AAAG AAGG AAA
1 AAAG AAAG AAAG AAAG AAA
13422323 ACTTAAACTA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
3 16 0.32
4 34 0.68
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:13422317 original size:14 final size:13
Alignment explanation
Indices: 13422254--13422314 Score: 70
Period size: 14 Copynumber: 4.6 Consensus size: 13
13422244 AAAGCAAAAC
*
13422254 AAAATAAAAAAGA
1 AAAAGAAAAAAGA
*
13422267 AAAA-AAAAAAAA
1 AAAAGAAAAAAGA
*
13422279 AGAAAGAAAAAAAA
1 A-AAAGAAAAAAGA
13422293 AAAAGAAAGAAAGA
1 AAAAGAAA-AAAGA
13422307 AAAAGAAA
1 AAAAGAAA
13422315 GAAGGAAAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
12 8 0.19
13 14 0.33
14 21 0.49
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:13422322 original size:14 final size:14
Alignment explanation
Indices: 13422262--13422323 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
13422252 ACAAAATAAA
13422262 AAAGAAAAA-AAA-
1 AAAGAAAAAGAAAG
*
13422274 AAAAAAGAAAGAAA-
1 AAAGAA-AAAGAAAG
*
13422288 AAAAAAAAAGAAAG
1 AAAGAAAAAGAAAG
13422302 AAAGAAAAAGAAAG
1 AAAGAAAAAGAAAG
*
13422316 AAGGAAAA
1 AAAGAAAA
13422324 CTTAAACTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
12 5 0.11
13 10 0.23
14 29 0.66
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAGAAAG
Found at i:13422948 original size:24 final size:24
Alignment explanation
Indices: 13422910--13422957 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13422900 TTCCAAAAAA
*
13422910 GTTGAAGAAAAACATG-ATAAGAG
1 GTTGAAAAAAAACATGAATAAGAG
13422933 GTTGAAAAGAAAACATGAATAAGAG
1 GTTGAAAA-AAAACATGAATAAGAG
13422958 TCTTGAGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.32
24 8 0.36
25 7 0.32
ACGTcount: A:0.54, C:0.04, G:0.25, T:0.17
Consensus pattern (24 bp):
GTTGAAAAAAAACATGAATAAGAG
Found at i:13423780 original size:43 final size:43
Alignment explanation
Indices: 13423730--13424104 Score: 388
Period size: 43 Copynumber: 8.9 Consensus size: 43
13423720 AGAATAATCT
* * *
13423730 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAATTGCGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * *
13423773 CATTTTATTTTT-GAAAGTTTCAATGCCTCAGTTGTGGAGAAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * * ** *
13423815 CATTTTATTTTTCCAAAGTTTCAAAGCCTCAGTTATAGAATAA
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* ** * * *
13423858 CATTTTATTTTTTAAACCTTCCAAAGCATCAATTGTAGG-GGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGT-GGAGGAG
* * * *
13423901 CATTTTATTTTCCAAAA-TTTCAAAGTCTCAGTTATGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
** *
13423943 CATTTTA-TTTTCAAAAGTTTCAAAGTTTCAATTGT-GAGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * *
13423984 CATTTTATTTTTC-AAAGTTCCAAAGCCTTAGTTGTGG-TGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* *
13424025 CATTTTATTTTT-AAAAGTTTCAAAGCTTCAGTTGTGAAGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * *
13424067 CATTTTATCTTTCAAAAGTTTAAAAGCCTTAGTTGTGG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGG
13424105 GAGAGTATTT
Statistics
Matches: 269, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
41 74 0.28
42 95 0.35
43 99 0.37
44 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (43 bp):
CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
Found at i:13423790 original size:42 final size:42
Alignment explanation
Indices: 13423730--13424104 Score: 362
Period size: 42 Copynumber: 8.9 Consensus size: 42
13423720 AGAATAATCT
* * *
13423730 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAATTGCGGGGGAG
1 CATTTTATTTTT-AAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * *
13423773 CATTTTATTTTTGAAAGTTTCAATGCCTCAGTTGTGGAGAAG
1 CATTTTATTTTTAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * * ** *
13423815 CATTTTATTTTTCCAAAGTTTCAAAGCCTCAGTTATAGAATAA
1 CATTTTATTTTT-AAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
** * * *
13423858 CATTTTATTTTTTAAACCTTCCAAAGCATCAATTGTAGG-GGAG
1 CATTTTA-TTTTTAAAAGTTTCAAAGCCTCAGTTGT-GGAGGAG
* * * *
13423901 CATTTTATTTTCCAAAA-TTTCAAAGTCTCAGTTATGGGGGAG
1 CATTTTATTTT-TAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* ** *
13423943 CATTTTATTTTCAAAAGTTTCAAAGTTTCAATTGT-GAGGAG
1 CATTTTATTTTTAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * * *
13423984 CATTTTATTTTTCAAAGTTCCAAAGCCTTAGTTGTGG-TGAG
1 CATTTTATTTTTAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* *
13424025 CATTTTATTTTTAAAAGTTTCAAAGCTTCAGTTGTGAAGGAG
1 CATTTTATTTTTAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
* * *
13424067 CATTTTATCTTTCAAAAGTTTAAAAGCCTTAGTTGTGG
1 CATTTTAT-TTTTAAAAGTTTCAAAGCCTCAGTTGTGG
13424105 GAGAGTATTT
Statistics
Matches: 269, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
41 75 0.28
42 95 0.35
43 93 0.35
44 6 0.02
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (42 bp):
CATTTTATTTTTAAAAGTTTCAAAGCCTCAGTTGTGGAGGAG
Found at i:13423822 original size:85 final size:85
Alignment explanation
Indices: 13423730--13424115 Score: 413
Period size: 85 Copynumber: 4.6 Consensus size: 85
13423720 AGAATAATCT
* ** *
13423730 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAATTGCGGGGGAGCATTTTATTTTTGAAAGTTTCA
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGGGAGCATTTTATTTTTAAAAGTTTCA
* * * *
13423795 ATGCCTCAGTTGTGGAGAAG
66 AAGCTTCAATTGTGGAGGAG
* * *** * ** *
13423815 CATTTTATTTTTCCAAAGTTTCAAAGCCTCAGTTATAGAATAACATTTTATTTTTTAAACCTTCC
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGGGAGCATTTTA-TTTTTAAAAGTTTC
*
13423880 AAAGCATCAATTGTAGG-GGAG
65 AAAGCTTCAATTGT-GGAGGAG
* * *
13423901 CATTTTATTTTCCAAAA-TTTCAAAGTCTCAGTTATGGGGGAGCATTTTATTTTCAAAAGTTTCA
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGGGAGCATTTTATTTTTAAAAGTTTCA
*
13423965 AAGTTTCAATTGT-GAGGAG
66 AAGCTTCAATTGTGGAGGAG
* * * *
13423984 CATTTTATTTTTC-AAAGTTCCAAAGCCTTAGTTGT-GGTGAGCATTTTATTTTTAAAAGTTTCA
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGGGAGCATTTTATTTTTAAAAGTTTCA
* *
13424047 AAGCTTCAGTTGTGAAGGAG
66 AAGCTTCAATTGTGGAGGAG
* * * * * *
13424067 CATTTTATCTTTCAAAAGTTTAAAAGCCTTAGTTGTGGGAGAGTATTTT
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGGGAGCATTTT
13424116 TCAAAAAAGA
Statistics
Matches: 248, Mismatches: 46, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
82 41 0.17
83 47 0.19
84 42 0.17
85 77 0.31
86 39 0.16
87 2 0.01
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (85 bp):
CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGGGGAGCATTTTATTTTTAAAAGTTTCA
AAGCTTCAATTGTGGAGGAG
Found at i:13424124 original size:83 final size:81
Alignment explanation
Indices: 13423879--13424121 Score: 235
Period size: 82 Copynumber: 3.0 Consensus size: 81
13423869 TTAAACCTTC
* * * * * * *
13423879 CAAAGCATCAATTGTAGGGGAGCATTTTAT-TTTCCAAAATTTC-AAAGTCTCAGTTATGGGGGA
1 CAAAGCTTCAATTGT-GAGGAGCATTTTATCTTT-C-AAAGTTCAAAAGCCTTAGTTGT-GGTGA
* *
13423942 GCATTTTATTTTCAAAAGTTT
62 GCA-TGTATTTTTAAAAGTTT
* * *
13423963 CAAAGTTTCAATTGTGAGGAGCATTTTATTTTTCAAAGTTCCAAAGCCTTAGTTGTGGTGAGCAT
1 CAAAGCTTCAATTGTGAGGAGCATTTTATCTTTCAAAGTTCAAAAGCCTTAGTTGTGGTGAGCA-
*
13424028 TTTATTTTTAAAAGTTT
65 TGTATTTTTAAAAGTTT
* *
13424045 CAAAGCTTCAGTTGTGAAGGAGCATTTTATCTTTCAAAAGTTTAAAAGCCTTAGTTGTGG-GAG-
1 CAAAGCTTCAATTGTG-AGGAGCATTTTATCTTTC-AAAGTTCAAAAGCCTTAGTTGTGGTGAGC
13424108 A-GTATTTTTCAAAA
64 ATGTATTTTT-AAAA
13424122 AAGAAAAGTT
Statistics
Matches: 139, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
80 7 0.05
81 4 0.03
82 45 0.32
83 45 0.32
84 38 0.27
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.38
Consensus pattern (81 bp):
CAAAGCTTCAATTGTGAGGAGCATTTTATCTTTCAAAGTTCAAAAGCCTTAGTTGTGGTGAGCAT
GTATTTTTAAAAGTTT
Found at i:13425049 original size:20 final size:20
Alignment explanation
Indices: 13425024--13425146 Score: 74
Period size: 20 Copynumber: 6.7 Consensus size: 20
13425014 TTTTGTATGA
13425024 ATTTGCATGATTAATATTAT
1 ATTTGCATGATTAATATTAT
13425044 ATTTGCATGA-T-A-ATT-T
1 ATTTGCATGATTAATATTAT
*
13425060 ATTTGC----TTAATATTTT
1 ATTTGCATGATTAATATTAT
13425076 ATTTGCATGATTAATA-TAT
1 ATTTGCATGATTAATATTAT
* *
13425095 -TTGTGC--GATTTATTAATAT
1 ATT-TGCATGA-TTAATATTAT
* * *
13425114 ATTTGCATGACTATTAATT-G
1 ATTTGCATGATTAAT-ATTAT
13425134 ATTTGCATGATTA
1 ATTTGCATGATTA
13425147 TCAATTTATT
Statistics
Matches: 82, Mismatches: 6, Indels: 30
0.69 0.05 0.25
Matches are distributed among these distances:
13 1 0.01
14 1 0.01
15 3 0.04
16 14 0.17
17 5 0.06
18 8 0.10
19 12 0.15
20 34 0.41
21 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
ATTTGCATGATTAATATTAT
Found at i:13425059 original size:32 final size:32
Alignment explanation
Indices: 13425023--13425086 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
13425013 TTTTTGTATG
*
13425023 AATTTGCATGATTAATATTATATTTGCATGAT
1 AATTTACATGATTAATATTATATTTGCATGAT
** * *
13425055 AATTTATTTGCTTAATATTTTATTTGCATGAT
1 AATTTACATGATTAATATTATATTTGCATGAT
13425087 TAATATATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.52
Consensus pattern (32 bp):
AATTTACATGATTAATATTATATTTGCATGAT
Found at i:13425152 original size:20 final size:20
Alignment explanation
Indices: 13425113--13425177 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
13425103 TTTATTAATA
* *
13425113 TATTTGCATGACTATTAATT
1 TATTTGCATGATTATCAATT
*
13425133 GATTTGCATGATTATCAATT
1 TATTTGCATGATTATCAATT
*
13425153 TATTTACATGATTATCAATT
1 TATTTGCATGATTATCAATT
13425173 TATTT
1 TATTT
13425178 ATTTGCATGA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (20 bp):
TATTTGCATGATTATCAATT
Found at i:13425186 original size:24 final size:24
Alignment explanation
Indices: 13425134--13425189 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 24
13425124 CTATTAATTG
13425134 ATTTGCATGATTATCAATTTATTT
1 ATTTGCATGATTATCAATTTATTT
13425158 A----CATGATTATCAATTTATTT
1 ATTTGCATGATTATCAATTTATTT
13425178 ATTTGCATGATT
1 ATTTGCATGATT
13425190 GCATGATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
20 20 0.71
24 8 0.29
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (24 bp):
ATTTGCATGATTATCAATTTATTT
Done.