Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 69 of 130
Found at i:14385292 original size:20 final size:22
Alignment explanation
Indices: 14385250--14385297 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 22
14385240 GTAAAAGCTA
*
14385250 AAATAAAATTATTTTATATTTT
1 AAATAAAAGTATTTTATATTTT
14385272 AAATAAAAGTA-TTTA-ATTTT
1 AAATAAAAGTATTTTATATTTT
14385292 AAATAA
1 AAATAA
14385298 TTATTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.44
21 4 0.16
22 10 0.40
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AAATAAAAGTATTTTATATTTT
Found at i:14390811 original size:2 final size:2
Alignment explanation
Indices: 14390804--14390835 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14390794 TAAAGTATGT
14390804 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14390836 AAGGTAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14391337 original size:21 final size:22
Alignment explanation
Indices: 14391302--14391342 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14391292 TATTTTTTAT
**
14391302 ATTTTTAAACTTATT-TATTTG
1 ATTTTTAAAAATATTGTATTTG
14391323 ATTTTTAAAAATATTGTATT
1 ATTTTTAAAAATATTGTATT
14391343 GTTTTTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATTTTTAAAAATATTGTATTTG
Found at i:14391974 original size:28 final size:30
Alignment explanation
Indices: 14391929--14391987 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
14391919 AAAAACATCT
*
14391929 TTATAGTAAGTAATTAAATAAAATAAATAA
1 TTATAGTAAATAATTAAATAAAATAAATAA
* *
14391959 TTATA-TAAATAA-TAAATTAAATAGATAA
1 TTATAGTAAATAATTAAATAAAATAAATAA
14391987 T
1 T
14391988 CTTTATACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 15 0.58
29 6 0.23
30 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (30 bp):
TTATAGTAAATAATTAAATAAAATAAATAA
Found at i:14391976 original size:16 final size:16
Alignment explanation
Indices: 14391940--14391987 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
14391930 TATAGTAAGT
14391940 AATTAAATAAAATAA-A
1 AATTAAAT-AAATAATA
*
14391956 TAATTATATAAATAATA
1 -AATTAAATAAATAATA
*
14391973 AATTAAATAGATAAT
1 AATTAAATAAATAAT
14391988 CTTTATACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
AATTAAATAAATAATA
Found at i:14392512 original size:28 final size:29
Alignment explanation
Indices: 14392442--14392512 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 29
14392432 AGTGATAAAG
*
14392442 TATTATGAATAATTAAAATATTTTAAAAAA
1 TATTATGAATAA-TAAAATATATTAAAAAA
14392472 TATTTAT-AA-AATAATAA-ATATTAAAAAA
1 TA-TTATGAATAATAA-AATATATTAAAAAA
14392500 TA-TATGAATAATA
1 TATTATGAATAATA
14392513 TAGTACTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
26 3 0.08
27 2 0.06
28 19 0.53
29 4 0.11
30 4 0.11
31 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (29 bp):
TATTATGAATAATAAAATATATTAAAAAA
Found at i:14395365 original size:18 final size:18
Alignment explanation
Indices: 14395342--14395376 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
14395332 AATTTTTCGA
14395342 TTTTTTTTT-GAAATTTT
1 TTTTTTTTTGGAAATTTT
14395359 TTTTTTTTTGGAAATTTT
1 TTTTTTTTTGGAAATTTT
14395377 CTAAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTTTTTTTTGGAAATTTT
Found at i:14395827 original size:13 final size:13
Alignment explanation
Indices: 14395809--14395842 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14395799 CGAGCCAAGC
*
14395809 TGAGCCGTATCTT
1 TGAGCCGTACCTT
*
14395822 TGAGCCGCACCTT
1 TGAGCCGTACCTT
14395835 TGAGCCGT
1 TGAGCCGT
14395843 CATTTGTGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.15, C:0.29, G:0.26, T:0.29
Consensus pattern (13 bp):
TGAGCCGTACCTT
Found at i:14395953 original size:25 final size:24
Alignment explanation
Indices: 14395899--14395953 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
14395889 CCGTTTTTTG
* *
14395899 TTTTTCTTTGGTATTTTATTTATT
1 TTTTTATTTAGTATTTTATTTATT
14395923 TATTTTATTTAGTATTTT-TCTTAGTT
1 T-TTTTATTTAGTATTTTAT-TTA-TT
14395949 TTTTT
1 TTTTT
14395954 TTCCTTCTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 2 0.08
25 21 0.81
26 3 0.12
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.75
Consensus pattern (24 bp):
TTTTTATTTAGTATTTTATTTATT
Found at i:14399772 original size:13 final size:13
Alignment explanation
Indices: 14399751--14399780 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14399741 AAAAAATGAT
14399751 AAATATGAAATAA
1 AAATATGAAATAA
*
14399764 AAATCTGAAATAA
1 AAATATGAAATAA
14399777 AAAT
1 AAAT
14399781 GAAAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (13 bp):
AAATATGAAATAA
Found at i:14400128 original size:42 final size:42
Alignment explanation
Indices: 14400069--14400254 Score: 248
Period size: 42 Copynumber: 4.4 Consensus size: 42
14400059 ATTTGATCAA
* * *
14400069 AGCTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAAT
1 AGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT
* *
14400111 AGCTCCTCTAATCAGAGGCTCAACGACTTT-CAAAAATAAAT
1 AGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT
* * *
14400152 GGCTCATCTAATTAGAGGCTCAACGACTTTAGAATAATAAAT
1 AGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT
*
14400194 TGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT
1 AGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT
* *
14400236 AAAGCTCTTCTAAACAGAG
1 --AGCTCATCTAATCAGAG
14400255 TTAATTTTTT
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
41 37 0.29
42 77 0.60
44 14 0.11
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (42 bp):
AGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT
Found at i:14400214 original size:83 final size:84
Alignment explanation
Indices: 14400082--14400235 Score: 256
Period size: 83 Copynumber: 1.8 Consensus size: 84
14400072 TCCTCTAAAC
* *
14400082 AGAGGCTCAACGACTTTTGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAACGACTTT-CAAAA
1 AGAGGCTCAACGACTTTAGAAAAATAAATAGCTCATCTAATCAGAGGCTCAACGACTTTACAAAA
14400146 ATAAATGGCTCATCTAATT
66 ATAAATGGCTCATCTAATT
* * *
14400165 AGAGGCTCAACGACTTTAGAATAATAAATTGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAA
1 AGAGGCTCAACGACTTTAGAAAAATAAATAGCTCATCTAATCAGAGGCTCAACGACTTTACAAAA
14400230 ATAAAT
66 ATAAAT
14400236 AAAGCTCTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 55 0.85
84 10 0.15
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (84 bp):
AGAGGCTCAACGACTTTAGAAAAATAAATAGCTCATCTAATCAGAGGCTCAACGACTTTACAAAA
ATAAATGGCTCATCTAATT
Found at i:14400350 original size:102 final size:101
Alignment explanation
Indices: 14400195--14400382 Score: 268
Period size: 102 Copynumber: 1.9 Consensus size: 101
14400185 ATAATAAATT
* * * * *
14400195 GCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATAAAGCTCTTCTAAACAGAGTTAAT
1 GCTCATCTAAGCAGAGGCTCAACAACTTTAGAAAAATAAACAAAGCTCCTCTAAACAGAGGTAAT
*
14400260 TTTTTTTTTTTTTTATTTTTTAAAATTTTGATCAAA
66 TTTTTTTGTTTTTTATTTTTTAAAATTTTGATCAAA
* * * *
14400296 GCTCCTCTAAGCAGAGGCTTAACAACTTTGAGAAATATAAACAAAGCTCCTCTAAGCAGAGGTAA
1 GCTCATCTAAGCAGAGGCTCAACAACTTT-AGAAAAATAAACAAAGCTCCTCTAAACAGAGGTAA
*
14400361 TTTTTTTTGTTTTTTGTTTTTT
65 TTTTTTTTGTTTTTTATTTTTT
14400383 GTTTTTTTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
101 25 0.33
102 50 0.67
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (101 bp):
GCTCATCTAAGCAGAGGCTCAACAACTTTAGAAAAATAAACAAAGCTCCTCTAAACAGAGGTAAT
TTTTTTTGTTTTTTATTTTTTAAAATTTTGATCAAA
Found at i:14400375 original size:7 final size:7
Alignment explanation
Indices: 14400363--14400393 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
14400353 AGAGGTAATT
14400363 TTTTTTG
1 TTTTTTG
14400370 TTTTTTG
1 TTTTTTG
14400377 TTTTTTG
1 TTTTTTG
14400384 TTTTTT-
1 TTTTTTG
14400390 TTTT
1 TTTT
14400394 AAATTTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (7 bp):
TTTTTTG
Found at i:14400472 original size:42 final size:42
Alignment explanation
Indices: 14400410--14400656 Score: 254
Period size: 42 Copynumber: 5.9 Consensus size: 42
14400400 TGATCAAAGT
*
14400410 TCCTCTAAGT-AGAGGCTCAACGACTTTTGAAAAATAAATGGC
1 TCCTCTAA-TCAGAGGCTCAACGACTTTAGAAAAATAAATGGC
** * *
14400452 TTTTCTAATCAGAGGATCAACGACTTT-GAAAAATAAATAGC
1 TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGC
*
14400493 TCCTCTAATCAGAGGCTCAATGACTTTAGAAAAATAAATGGC
1 TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGC
* * *
14400535 TCCTCTAATTAGAGGCTCAATGACTTTAGAAAAATAAATTGC
1 TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGC
* * * * * ** *
14400577 TCTTCTAATCAGAGGCACTACAACTTT-TAAAAGCAAATTGC
1 TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGC
*
14400618 TCCTCTAAAT-AGAGG--CAACGAAACTTTGGAAAAATAAAT
1 TCCTCT-AATCAGAGGCTCAACG--ACTTTAGAAAAATAAAT
14400657 TGCTTATTGA
Statistics
Matches: 173, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.02
41 63 0.36
42 107 0.62
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (42 bp):
TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGC
Found at i:14400549 original size:83 final size:84
Alignment explanation
Indices: 14400410--14400656 Score: 263
Period size: 83 Copynumber: 3.0 Consensus size: 84
14400400 TGATCAAAGT
* **
14400410 TCCTCTAAGT-AGAGGCTCAACGACTTTTGAAAAATAAATGGCTTTTCTAATCAGAGGATCAACG
1 TCCTCTAA-TCAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCCTCTAATCAGAGGATCAACG
14400474 ACTTT-GAAAAATAAATAGC
65 ACTTTAGAAAAATAAATAGC
* * * *
14400493 TCCTCTAATCAGAGGCTCAATGACTTTAGAAAAATAAATGGCTCCTCTAATTAGAGGCTCAATGA
1 TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCCTCTAATCAGAGGATCAACGA
*
14400558 CTTTAGAAAAATAAATTGC
66 CTTTAGAAAAATAAATAGC
* * * * * ** *
14400577 TCTTCTAATCAGAGGCACTACAACTTT-TAAAAGCAAATTGCTCCTCTAAAT-AGAGG--CAACG
1 TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCCTCT-AATCAGAGGATCAACG
*
14400638 AAACTTTGGAAAAATAAAT
65 --ACTTTAGAAAAATAAAT
14400657 TGCTTATTGA
Statistics
Matches: 140, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
81 4 0.03
82 1 0.01
83 97 0.69
84 38 0.27
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (84 bp):
TCCTCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCCTCTAATCAGAGGATCAACGA
CTTTAGAAAAATAAATAGC
Found at i:14400551 original size:338 final size:324
Alignment explanation
Indices: 14399932--14400590 Score: 958
Period size: 338 Copynumber: 2.0 Consensus size: 324
14399922 ATTCAACTGG
* *
14399932 ATTTTTTATTTTTTTTATTTTTTAAATTTTGATCAAAGCTCCTCTAAGCAGATGCTCAACGACTT
1 ATTTTTTATTTTTTTTATTTTTTAAATTTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACAACTT
*
14399997 TGAGAAACATAAACAAAGCTCTTCTAAACAGAGGTAATTTTTTTGTTTTTTTGTTTTTTTAAATT
66 TGAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAATTTTTTTGTTTTTTTGTTTTTTTAAATT
14400062 TGATCAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAATAGCTCCTCTAATCAGA
131 TGATCAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAATAGCTCCTCTAATCAGA
* * * *
14400127 GGCTCAACGACTTTCAAAAATAAATGGCTCATCTAATTAGAGGCTCAACGACTTTAGAATAATAA
196 GGATCAACGACTTTCAAAAATAAATAGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAA
*
14400192 ATTGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATAAAGCTCTTCTAAACAGAGTT
261 ATGGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAAT--AGCTCTTCTAAACAGAGTT
14400257 A
324 A
* *
14400258 ATTTTTTTTTTTTTTTATTTTTTAAAATTTTGATCAAAGCTCCTCTAAGCAGAGGCTTAACAACT
1 ATTTTTTATTTTTTTTATTTTTT-AAATTTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACAACT
* *
14400323 TTGAGAAATATAAACAAAGCTCCTCTAAGCAGAGGTAATTTTTTTTGTTTTTTGTTTTTTGTTTT
65 TTGAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAA-TTTTTTTG-----T-TTTTTTG---T
* ** *
14400388 TTTTTTAAATTTTGATCAAAGTTCCTCTAAGTAGAGGCTCAACGACTTTTGAAAAATAAATGGCT
120 TTTTTTAAA-TTTGATCAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAATAGCT
** * * *
14400453 TTTCTAATCAGAGGATCAACGACTTTGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAATGACT
184 CCTCTAATCAGAGGATCAACGACTTTCAAAAATAAATAGCTCATCTAATCAGAGGCTCAACGACT
* * * *
14400518 TTAGAAAAATAAATGGCTCCTCTAATTAGAGGCTCAATGACTTTAGAAAAATAAATTGCTCTTCT
249 TTAGAAAAATAAATGGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATAGCTCTTCT
*
14400583 AATCAGAG
314 AAACAGAG
14400591 GCACTACAAC
Statistics
Matches: 295, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
326 22 0.07
327 73 0.25
328 8 0.03
333 1 0.00
334 7 0.02
336 15 0.05
337 10 0.03
338 159 0.54
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.37
Consensus pattern (324 bp):
ATTTTTTATTTTTTTTATTTTTTAAATTTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACAACTT
TGAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAATTTTTTTGTTTTTTTGTTTTTTTAAATT
TGATCAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAATAGCTCCTCTAATCAGA
GGATCAACGACTTTCAAAAATAAATAGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAA
ATGGCTCATCTAATCAGAGGCTCAACGACTTTAGAAAAATAAATAGCTCTTCTAAACAGAGTTA
Found at i:14400644 original size:125 final size:124
Alignment explanation
Indices: 14400410--14400656 Score: 311
Period size: 125 Copynumber: 2.0 Consensus size: 124
14400400 TGATCAAAGT
* * *
14400410 TCCTCTAAGTAGAGGCTCAACGACTTTTGAAAAATAAATGGCTTTTCTAATCAGAGGATCAACGA
1 TCCTCTAAGTAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCTTCTAATCAGAGGATCAACAA
* *
14400475 CTTTGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAATGACTTTAGAAAAATAAATGGC
66 CTTTGAAAAACAAATAGCTCCTCTAATCAGAGGCACAA-GACTTTAGAAAAATAAATGGC
* * * *
14400535 TCCTCTAATTAGAGGCTCAATGACTTTAGAAAAATAAATTGCTCTTCTAATCAGAGGCA-CTACA
1 TCCTCTAAGTAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCTTCTAATCAGAGG-ATCAACA
* * * *
14400599 ACTTTTAAAAGCAAATTGCTCCTCTAAAT-AGAGGCAACGAA-ACTTTGGAAAAATAAAT
65 ACTTTGAAAAACAAATAGCTCCTCT-AATCAGAGGC-AC-AAGACTTTAGAAAAATAAAT
14400657 TGCTTATTGA
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
125 98 0.93
126 5 0.05
127 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (124 bp):
TCCTCTAAGTAGAGGCTCAACGACTTTAGAAAAATAAATGGCTCTTCTAATCAGAGGATCAACAA
CTTTGAAAAACAAATAGCTCCTCTAATCAGAGGCACAAGACTTTAGAAAAATAAATGGC
Found at i:14401007 original size:43 final size:42
Alignment explanation
Indices: 14400925--14401033 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 42
14400915 TTCAAGGCTT
* ** *
14400925 TTCAAAGGTTCTCATTTGGCAAACTTGGAATTCATATCCAAAAA
1 TTCAAAGCTTCTCATTT-G-AATTTTGGAATTCACATCCAAAAA
*
14400969 -TCTAAAGCTTTTCATTTGAATTTTGGAGATTCACATCCAAAAA
1 TTC-AAAGCTTCTCATTTGAATTTTGGA-ATTCACATCCAAAAA
14401012 TTCAAAGCTTCTCATTTGAATT
1 TTCAAAGCTTCTCATTTGAATT
14401034 CAAAGGCTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 7 0.12
43 35 0.62
44 14 0.25
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (42 bp):
TTCAAAGCTTCTCATTTGAATTTTGGAATTCACATCCAAAAA
Found at i:14407231 original size:58 final size:58
Alignment explanation
Indices: 14407166--14407320 Score: 197
Period size: 59 Copynumber: 2.7 Consensus size: 58
14407156 TTTTGTGCAT
14407166 GAAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGAA-ACTTTAATTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAATA-TTTAATTTCAA
* * * * * *
14407224 GAAAAATTGATACTTTCAATTTTTCTTCAAAAAAACCTTTTTTGAATATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAATATTTAATTTCAA
* *
14407283 GAAAAATTGATACTTTTAACTTTTTCTCAAAAATATTT
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTT
14407321 AAGGAAGCTA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
58 32 0.39
59 49 0.60
60 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (58 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAATATTTAATTTCAA
Found at i:14410025 original size:13 final size:13
Alignment explanation
Indices: 14409983--14410035 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
14409973 TAAGTAGACC
*
14409983 ATAAGATAAAAATT
1 ATAAAATAAAAA-T
* *
14409997 AAAAAATGACAAAT
1 ATAAAAT-AAAAAT
*
14410011 ATGAAATAAAAAT
1 ATAAAATAAAAAT
14410024 ATAAAATAAAAA
1 ATAAAATAAAAA
14410036 AAATTTTTAC
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
13 16 0.52
14 11 0.35
15 4 0.13
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.21
Consensus pattern (13 bp):
ATAAAATAAAAAT
Found at i:14412042 original size:17 final size:17
Alignment explanation
Indices: 14412012--14412048 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14412002 AGACTCCACT
14412012 TTTCTCTTACAAGATTG
1 TTTCTCTTACAAGATTG
14412029 TTTCT-TTACTAAGATTG
1 TTTCTCTTAC-AAGATTG
14412046 TTT
1 TTT
14412049 AATTTGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.22, C:0.14, G:0.11, T:0.54
Consensus pattern (17 bp):
TTTCTCTTACAAGATTG
Found at i:14413098 original size:21 final size:21
Alignment explanation
Indices: 14413072--14413120 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
14413062 AAGTAAGGGG
14413072 ATCGATCCCTCCTTTTAGGTA
1 ATCGATCCCTCCTTTTAGGTA
*
14413093 ATCGATCCCTCTTTTTAGGTA
1 ATCGATCCCTCCTTTTAGGTA
14413114 ATCGATC
1 ATCGATC
14413121 TCTTCCACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.39
Consensus pattern (21 bp):
ATCGATCCCTCCTTTTAGGTA
Found at i:14420790 original size:37 final size:36
Alignment explanation
Indices: 14420748--14420820 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 36
14420738 CCAAGAGGGG
*
14420748 ATGAATTGGTTAATTATGATTTGTTTTC-AATTTAATA
1 ATGAATTGGTTAATTATGA-AT-TTTTCAAATTTAATA
*
14420785 ATGAATTGGTTATTTATGAATTTTTCAAATTTAATA
1 ATGAATTGGTTAATTATGAATTTTTCAAATTTAATA
14420821 TCTAATGAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 5 0.15
36 10 0.30
37 18 0.55
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.51
Consensus pattern (36 bp):
ATGAATTGGTTAATTATGAATTTTTCAAATTTAATA
Found at i:14438716 original size:115 final size:114
Alignment explanation
Indices: 14438576--14438803 Score: 402
Period size: 115 Copynumber: 2.0 Consensus size: 114
14438566 CACTTCTGGG
*
14438576 AGTTACCATAAAATATTAACTTGCTTAATTACAATTATAAATTTTAAGTTAAATTAATTAATTAA
1 AGTTACCAGAAAATATTAACTTGCTTAATTACAATTATAAATTTTAAGTTAAATTAATTAATT-A
**
14438641 AAAATAAAATTATTAATTAAAATATATAAAACAAAATTTATTTATTATTA
65 AAAATAAAATTATTAATTAAAATATATAAAACAAAAAATATTTATTATTA
*
14438691 AGTTACCAGAAAATATTAACTTGCTTTATTACAATTATAAATTTTAAGTTAAATTAATTAATTAA
1 AGTTACCAGAAAATATTAACTTGCTTAATTACAATTATAAATTTTAAGTTAAATTAATTAATTAA
*
14438756 AAATAAAATTATTAATTAAAATATTTAAAACAAAAAATATTTATTATT
66 AAATAAAATTATTAATTAAAATATATAAAACAAAAAATATTTATTATT
14438804 GTAAATTAAA
Statistics
Matches: 108, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
114 47 0.44
115 61 0.56
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (114 bp):
AGTTACCAGAAAATATTAACTTGCTTAATTACAATTATAAATTTTAAGTTAAATTAATTAATTAA
AAATAAAATTATTAATTAAAATATATAAAACAAAAAATATTTATTATTA
Found at i:14439421 original size:22 final size:22
Alignment explanation
Indices: 14439390--14439436 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
14439380 CCATATGAGA
14439390 AAATTAAATTAATT-AATCTTC
1 AAATTAAATTAATTAAATCTTC
*
14439411 AAATTACAATTAATTAAATTTTC
1 AAATTA-AATTAATTAAATCTTC
14439434 AAA
1 AAA
14439437 AAGATCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.26
22 8 0.35
23 9 0.39
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATTAAATTAATTAAATCTTC
Found at i:14444374 original size:12 final size:13
Alignment explanation
Indices: 14444351--14444382 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14444341 TATTATTGTT
14444351 ATTATTTAAAAAC
1 ATTATTTAAAAAC
*
14444364 ATTATTTAAAAAT
1 ATTATTTAAAAAC
14444377 ATTATT
1 ATTATT
14444383 ATTATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTATTTAAAAAC
Found at i:14444467 original size:29 final size:29
Alignment explanation
Indices: 14444425--14444486 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
14444415 GATTAAAGTC
* *
14444425 AATAGTAAAAATAACAAAATTTATAGATA
1 AATAGTAAAAATAACAAAATTAATAGAAA
14444454 AATAGTAAAAATAACAAAATTAATAGAAA
1 AATAGTAAAAATAACAAAATTAATAGAAA
14444483 AATA
1 AATA
14444487 TGAACAGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.24
Consensus pattern (29 bp):
AATAGTAAAAATAACAAAATTAATAGAAA
Found at i:14444933 original size:34 final size:34
Alignment explanation
Indices: 14444863--14444941 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
14444853 AAAATAGATG
* * * * **
14444863 TTGAGAAGCCTTTAAGGCTCTTAGAAATGTCGTT
1 TTGAGAAGCCTTTAAAGCTCTCAAAAATCTAATT
*
14444897 TTGAGAAGCCTTTAAAGTTCTCAAAAATCTAATT
1 TTGAGAAGCCTTTAAAGCTCTCAAAAATCTAATT
14444931 TTGAGAAGCCT
1 TTGAGAAGCCT
14444942 AAAAAGATCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (34 bp):
TTGAGAAGCCTTTAAAGCTCTCAAAAATCTAATT
Found at i:14445928 original size:21 final size:21
Alignment explanation
Indices: 14445901--14445983 Score: 66
Period size: 21 Copynumber: 3.9 Consensus size: 21
14445891 TGGTTGATTG
14445901 TTGTTGTTGATGTTATTGTTTA
1 TTGTTGTTGAT-TTATTGTTTA
*
14445923 -TGTTGTT-A-TTATTAGTGATA
1 TTGTTGTTGATTTATT-GT-TTA
14445943 TTGTTGTTGATCTTATTG-TTA
1 TTGTTGTTGAT-TTATTGTTTA
* *
14445964 TTGTTTTTGTTATTATTGTT
1 TTGTTGTTGAT-TTATTGTT
14445984 ATATGAGTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
18 5 0.10
19 2 0.04
20 3 0.06
21 31 0.63
22 2 0.04
23 1 0.02
24 5 0.10
ACGTcount: A:0.16, C:0.01, G:0.19, T:0.64
Consensus pattern (21 bp):
TTGTTGTTGATTTATTGTTTA
Found at i:14445984 original size:21 final size:21
Alignment explanation
Indices: 14445911--14445985 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 21
14445901 TTGTTGTTGA
14445911 TGTTATTGTTTATGTTGTTATTAT
1 TGTTATTG-TT-T-TTGTTATTAT
* * *
14445935 TAGTGATATTGTTGTTGATCTTAT
1 T-GT--TATTGTTTTTGTTATTAT
14445959 TGTTATTGTTTTTGTTATTAT
1 TGTTATTGTTTTTGTTATTAT
14445980 TGTTAT
1 TGTTAT
14445986 ATGAGTGAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
21 21 0.50
23 2 0.05
24 10 0.24
25 2 0.05
26 2 0.05
27 5 0.12
ACGTcount: A:0.17, C:0.01, G:0.17, T:0.64
Consensus pattern (21 bp):
TGTTATTGTTTTTGTTATTAT
Found at i:14448093 original size:19 final size:19
Alignment explanation
Indices: 14448045--14448082 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14448035 TGACATGTTT
*
14448045 AATATATAAAGCATAAACA
1 AATATATAAACCATAAACA
14448064 AATATATAAACCATAAACA
1 AATATATAAACCATAAACA
14448083 TTAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.63, C:0.13, G:0.03, T:0.21
Consensus pattern (19 bp):
AATATATAAACCATAAACA
Found at i:14450319 original size:14 final size:14
Alignment explanation
Indices: 14450300--14450326 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14450290 TTTATGATAT
14450300 ATTTTTGAAAATTC
1 ATTTTTGAAAATTC
14450314 ATTTTTGAAAATT
1 ATTTTTGAAAATT
14450327 ATGTTGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (14 bp):
ATTTTTGAAAATTC
Found at i:14450351 original size:34 final size:35
Alignment explanation
Indices: 14450280--14450359 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 35
14450270 TCTAGATAGT
*
14450280 TTTTTAAAAATTTATGATATATTTTTGAAAATTCA
1 TTTTTAAAAATTTATGATATATTTTTGAAAATGCA
* * * * *
14450315 TTTTTGAAAA-TTATGTTGTATTTTTGGACATGCA
1 TTTTTAAAAATTTATGATATATTTTTGAAAATGCA
*
14450349 TTTTAAAAAAT
1 TTTTTAAAAAT
14450360 GCATCACAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
34 27 0.75
35 9 0.25
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (35 bp):
TTTTTAAAAATTTATGATATATTTTTGAAAATGCA
Found at i:14451901 original size:6 final size:6
Alignment explanation
Indices: 14451890--14451942 Score: 106
Period size: 6 Copynumber: 8.8 Consensus size: 6
14451880 TTAGTCCGTT
14451890 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
14451938 ATATA
1 ATATA
14451943 TAGCTTTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAA
Found at i:14453595 original size:27 final size:28
Alignment explanation
Indices: 14453530--14453614 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 28
14453520 ATTTTTAAAA
*
14453530 TATAATAAAATATTTAAATTTAAAAATT
1 TATAATATAATATTTAAATTTAAAAATT
*
14453558 TATAATATAATATTTAAA-TTATAAATT
1 TATAATATAATATTTAAATTTAAAAATT
* * *
14453585 TATTAAT-TAATA-TGATATTTAAAAAAT
1 TA-TAATATAATATTTAAATTTAAAAATT
14453612 TAT
1 TAT
14453615 TTATCTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
26 4 0.08
27 24 0.49
28 21 0.43
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (28 bp):
TATAATATAATATTTAAATTTAAAAATT
Found at i:14453704 original size:29 final size:29
Alignment explanation
Indices: 14453672--14453731 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
14453662 AGTCAATAAA
* *
14453672 TTTATAATTTAAGTATTATATTAAAAATT
1 TTTAAAATTTAAGTATCATATTAAAAATT
*
14453701 TTTAAAATTTAAGTATCATATTAAATATT
1 TTTAAAATTTAAGTATCATATTAAAAATT
14453730 TT
1 TT
14453732 ATTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (29 bp):
TTTAAAATTTAAGTATCATATTAAAAATT
Found at i:14457406 original size:2 final size:2
Alignment explanation
Indices: 14457394--14457425 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
14457384 AGAGCAAAGA
14457394 AG AG CAG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG -AG AG AG AG AG AG AG AG AG AG AG AG AG A
14457426 TGGGGAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14458596 original size:18 final size:17
Alignment explanation
Indices: 14458575--14458610 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
14458565 TGATAATTAA
*
14458575 AATTAAATTGTAATTGAT
1 AATTAAATT-AAATTGAT
14458593 AATTAAATTAAATTGAT
1 AATTAAATTAAATTGAT
14458610 A
1 A
14458611 TTGATAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (17 bp):
AATTAAATTAAATTGAT
Found at i:14458604 original size:23 final size:24
Alignment explanation
Indices: 14458558--14458616 Score: 95
Period size: 23 Copynumber: 2.5 Consensus size: 24
14458548 CTAATCTTAC
14458558 TTGATATTGATAATTAAAATTAAA
1 TTGATATTGATAATTAAAATTAAA
14458582 TTG-TAATTGATAATT-AAATTAAA
1 TTGAT-ATTGATAATTAAAATTAAA
14458605 TTGATATTGATA
1 TTGATATTGATA
14458617 GTTTTTGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
23 19 0.58
24 14 0.42
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (24 bp):
TTGATATTGATAATTAAAATTAAA
Found at i:14466986 original size:63 final size:63
Alignment explanation
Indices: 14466918--14467661 Score: 280
Period size: 62 Copynumber: 11.8 Consensus size: 63
14466908 CATTTTACCA
* *
14466918 AAAAAATACCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAATGTGTTTTTTGT
1 AAAAAATACCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTGT
* * ** * * * * * *
14466981 AAAAAATACCTTTAATAAT--TTTTTTAAAAATTTTTTAA-GGGATTAATAAAGGTTTTTTTTTT
1 AAAAAATACCTTCAATAATCCCTTGATAAAAA--ATTAAAGGGGATTATTGAAGGTATTTTTTGT
* * * *
14467043 ATTAAAAACT-CCTTCAATAATCCCCTGATAAAAAATTGATGGGGATTATTGAAGGTATTTTTTA
1 A--AAAAA-TACCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTG
14467107 T
63 T
* *** ** ** * * * *
14467108 AAAAAAATGCCTTCAATAATTTTTTTTTAAAATTTTCAA-GGGATTATTGAAAGTGTTTTTTACT
1 -AAAAAATACCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTT-GT
** * * * * * * *
14467172 -AAAAACGCCTTTAATAATCCTTTGATAAAATA-T-AAGGAGATTATTGAAAGCATTTTATGCAA
1 AAAAAATACCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTG---
*
14467234 AA
63 -T
* * ** * * *
14467236 AAAAAAAAGCCTTGAATAAT-TTTTTA-AAAAAATTTAAAGGGG-TTATTAAAAGTATTTTCTTG
1 AAAAAATA-CCTTCAATAATCCCTTGATAAAAAA-TTAAAGGGGATTATTGAAGGTATTTT-TTG
14467298 -
63 T
* * * ** * * *
14467298 AAAATACACCTTCAATAGTTTCTT-ATAAAAAATTTTAAA--GGATTATTGAAGGTGTTTTGTGC
1 AAAAAATACCTTCAATAATCCCTTGATAAAAAA--TTAAAGGGGATTATTGAAGGTATTTTTTGT
* * * * *
14467360 AAAAAATACCTTTAATAATCTCC-TAATAAAAAATTGAAA-GAGATTATTGAAGGTATTTTCTAT
1 AAAAAATACCTTCAATAATC-CCTTGATAAAAAATT-AAAGGGGATTATTGAAGGTATTTTTTGT
* * ** ** * *
14467423 AAAATACACCTTCAATAATTATCTT--TAAAAAATTTTAGAGAATTATTGAAGGT-TTTTTT-T
1 AAAAAATACCTTCAATAA-TCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTGT
** * * * * * * *
14467483 ACTAAAAACGCCTTCAATAAT-TCTCTAATAAAAAATTATAGTGAATTATTGAAGGCATTTTTTA
1 A--AAAAATACCTTCAATAATCCCT-TGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTG
*
14467547 C
63 T
* ** ** * *
14467548 AAAAAATACCTTCAATAATCCCTCG-TCCAAAATTGAAA-AAGATTATTGAAAGTATTTTTAGT
1 AAAAAATACCTTCAATAATCCCTTGATAAAAAATT-AAAGGGGATTATTGAAGGTATTTTTTGT
* * * * * * *
14467610 AAACAACATCTTCAATAATCTCC-TCATCAAAATTTAAA-GAGATTATTGAAGG
1 AAAAAATACCTTCAATAATC-CCTTGATAAAAAATTAAAGGGGATTATTGAAGG
14467662 CGTTGTCTAC
Statistics
Matches: 515, Mismatches: 121, Indels: 91
0.71 0.17 0.13
Matches are distributed among these distances:
60 7 0.01
61 51 0.10
62 183 0.36
63 144 0.28
64 59 0.11
65 31 0.06
66 33 0.06
67 7 0.01
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (63 bp):
AAAAAATACCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTGT
Found at i:14467167 original size:127 final size:126
Alignment explanation
Indices: 14466926--14467219 Score: 355
Period size: 127 Copynumber: 2.3 Consensus size: 126
14466916 CAAAAAAATA
* * *
14466926 CCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAATGTGTTTTTTGTAAAAAATACC
1 CCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTATAAAAAATACC
* * * * *
14466991 TTTAATAATTTTTTTAAAAATTTTTTAAGGGATTAATAAAGGTTTTTTTTTTATTAAAAACT
66 TTCAATAATTTTTTTAAAAATTTTTCAAGGGATTAATAAAGG-TTGTTTTTTACTAAAAACG
* * * *
14467053 CCTTCAATAATCCCCTGATAAAAAATTGATGGGGATTATTGAAGGTATTTTTTATAAAAAAATGC
1 CCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTAT-AAAAAATAC
* *
14467118 CTTCAATAATTTTTTTTTAAAA-TTTTCAAGGGATTATTGAAA-G-TGTTTTTTACTAAAAACG
65 CTTCAATAA-TTTTTTTAAAAATTTTTCAAGGGATTAAT-AAAGGTTGTTTTTTACTAAAAACG
* * * *
14467179 CCTTTAATAATCCTTTGATAAAATA-T-AAGGAGATTATTGAA
1 CCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAA
14467220 AGCATTTTAT
Statistics
Matches: 144, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
124 13 0.09
125 1 0.01
126 36 0.25
127 49 0.34
128 31 0.22
129 14 0.10
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (126 bp):
CCTTCAATAATCCCTTGATAAAAAATTAAAGGGGATTATTGAAGGTATTTTTTATAAAAAATACC
TTCAATAATTTTTTTAAAAATTTTTCAAGGGATTAATAAAGGTTGTTTTTTACTAAAAACG
Found at i:14467344 original size:62 final size:62
Alignment explanation
Indices: 14467245--14467566 Score: 239
Period size: 63 Copynumber: 5.2 Consensus size: 62
14467235 AAAAAAAAAG
* * * * *
14467245 CCTTGAATAATTT-TT-TAAAAAAATTTAAAGGGGTTATTAAAAGTATTTTCTTGAAAATACA
1 CCTTCAATAATTTCTTATAAAAAATTTTAAA-GGATTATTGAAGGTATTTTCTTGAAAATACA
* * * * *
14467306 CCTTCAATAGTTTCTTATAAAAAATTTTAAAGGATTATTGAAGGTGTTTT-GTGCAAAAAATA
1 CCTTCAATAATTTCTTATAAAAAATTTTAAAGGATTATTGAAGGTATTTTCTTG-AAAATACA
* * * *
14467368 CCTTTAATAATCTCCTAATAAAAAA-TTGAAAGAGATTATTGAAGGTATTTTCTAT-AAAATACA
1 CCTTCAATAAT-TTCTTATAAAAAATTTTAAAG-GATTATTGAAGGTATTTTCT-TGAAAATACA
* * * * *
14467431 CCTTCAATAATTATCTT-TAAAAAATTTTAGAGAATTATTGAAGGT-TTTT-TTTACTAAAAACG
1 CCTTCAATAATT-TCTTATAAAAAATTTTAAAGGATTATTGAAGGTATTTTCTTGA--AAATACA
* * ** * * * * *
14467493 CCTTCAATAATTCTCTAATAAAAAATTATAGTGAATTATTGAAGGCATTTT-TTACAAAAAATA
1 CCTTCAATAATT-TCTTATAAAAAATTTTAAAGGATTATTGAAGGTATTTTCTT-GAAAATACA
14467556 CCTTCAATAAT
1 CCTTCAATAAT
14467567 CCCTCGTCCA
Statistics
Matches: 211, Mismatches: 35, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
59 1 0.00
60 2 0.01
61 17 0.08
62 78 0.37
63 105 0.50
64 6 0.03
65 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (62 bp):
CCTTCAATAATTTCTTATAAAAAATTTTAAAGGATTATTGAAGGTATTTTCTTGAAAATACA
Found at i:14467419 original size:125 final size:124
Alignment explanation
Indices: 14467236--14467566 Score: 346
Period size: 125 Copynumber: 2.7 Consensus size: 124
14467226 TTATGCAAAA
* * * * * * * * *
14467236 AAAAAAAAGCCTTGAATAATTTTTTAA-AAAAATTTAAAGGGGTTATTAAAAGTATTTTCT-TGA
1 AAAAAACA-CCTTCAATAATTCTCTAATAAAAAATTAAAGAGATTATTGAAGGTATTTTCTAT-A
* * *
14467299 AAATACACCTTCAATAGTT-TCTTATAAAAAATTTTAAAGGATTATTGAAGGTGTTTTGTGC
64 AAATACACCTTCAATAATTATCTT-TAAAAAATTTTAAAGAATTATTGAAGGTGTTTTGTAC
* *
14467360 AAAAAATACCTTTAATAA-TCTCCTAATAAAAAATTGAAAGAGATTATTGAAGGTATTTTCTATA
1 AAAAAACACCTTCAATAATTCT-CTAATAAAAAATT-AAAGAGATTATTGAAGGTATTTTCTATA
* * *
14467424 AAATACACCTTCAATAATTATCTTTAAAAAATTTTAGAGAATTATTGAAGGTTTTTTTTAC
64 AAATACACCTTCAATAATTATCTTTAAAAAATTTTAAAGAATTATTGAAGGTGTTTTGTAC
* * * * * * *
14467485 TAAAAACGCCTTCAATAATTCTCTAATAAAAAATTATAGTGAATTATTGAAGGCATTTTTTACAA
1 AAAAAACACCTTCAATAATTCTCTAATAAAAAATTAAAGAG-ATTATTGAAGGTATTTTCTATAA
* *
14467550 AAAATACCTTCAATAAT
65 AATACACCTTCAATAAT
14467567 CCCTCGTCCA
Statistics
Matches: 174, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
122 2 0.01
123 12 0.07
124 18 0.10
125 134 0.77
126 8 0.05
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (124 bp):
AAAAAACACCTTCAATAATTCTCTAATAAAAAATTAAAGAGATTATTGAAGGTATTTTCTATAAA
ATACACCTTCAATAATTATCTTTAAAAAATTTTAAAGAATTATTGAAGGTGTTTTGTAC
Found at i:14467580 original size:62 final size:63
Alignment explanation
Indices: 14467298--14467716 Score: 241
Period size: 62 Copynumber: 6.8 Consensus size: 63
14467288 TATTTTCTTG
* * * * * * * ** * *
14467298 AAAATACACCTTCAATAGTT-TCTTATAAAAAATTTTAAAGGATTATTGAAGGTGTTTTGTGC
1 AAAAAACACCTTCAATAATTCCCTAATAAAAAATTATAGAGAATTATTGAAGGCATTTTTTAC
* * * * * *
14467360 AAAAAATACCTTTAATAA-TCTCCTAATAAAAAATTGAAAGAG-ATTATTGAAGGTATTTTCTAT
1 AAAAAACACCTTCAATAATTC-CCTAATAAAAAATT-ATAGAGAATTATTGAAGGCATTTTTTAC
* ** * * **
14467423 AAAATACACCTTCAATAATTATCT-TTAAAAAATTTTAGAGAATTATTGAAGGTTTTTTTTAC
1 AAAAAACACCTTCAATAATTCCCTAATAAAAAATTATAGAGAATTATTGAAGGCATTTTTTAC
* * * *
14467485 TAAAAACGCCTTCAATAATTCTCTAATAAAAAATTATAGTGAATTATTGAAGGCATTTTTTAC
1 AAAAAACACCTTCAATAATTCCCTAATAAAAAATTATAGAGAATTATTGAAGGCATTTTTTAC
* ** ** * * * * *
14467548 AAAAAATACCTTCAATAA-TCCCTCGTCCAAAATTGAAAAAG-ATTATTGAAAGTA-TTTTTAGT
1 AAAAAACACCTTCAATAATTCCCTAATAAAAAATT-ATAGAGAATTATTGAAGGCATTTTTTA-C
* * * * * * * * *
14467610 AAACAACATCTTCAATAA-TCTCCTCATCAAAATTTAAAGAG-ATTATTGAAGGCGTTGTCTAC
1 AAAAAACACCTTCAATAATTC-CCTAATAAAAAATTATAGAGAATTATTGAAGGCATTTTTTAC
** * * *
14467672 CTAAAACGCCTTCAATAATTTCCT-A-AAAAAATT-TAGAGGATTATT
1 AAAAAACACCTTCAATAATTCCCTAATAAAAAATTATAGAGAATTATT
14467717 AATTAAAGGT
Statistics
Matches: 276, Mismatches: 69, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
59 4 0.01
60 12 0.04
61 12 0.04
62 131 0.47
63 113 0.41
64 4 0.01
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (63 bp):
AAAAAACACCTTCAATAATTCCCTAATAAAAAATTATAGAGAATTATTGAAGGCATTTTTTAC
Found at i:14467580 original size:125 final size:125
Alignment explanation
Indices: 14467323--14467690 Score: 325
Period size: 125 Copynumber: 3.0 Consensus size: 125
14467313 TAGTTTCTTA
* * * *
14467323 TAAAAAATTTTAAAGGATTATTGAAGGTGTTTTGTGCAAAAAATACCTTTAATAATCTCCTAATA
1 TAAAAAATTTTAAAGAATTATTGAAGGTGTTTTGTACAAAAAACACCTTCAATAATCTCCTAATA
* * * * *
14467388 AAAAATTGAAAGAGATTATTGAAGGTATTTTCTATAAAATACACCTTCAATAATTATCTT
66 AAAAATTGAAAGAGATTATTGAAGGCATTTTCTACAAAAAACACCTTCAATAATCATCTG
* * * * *
14467448 TAAAAAATTTTAGAGAATTATTGAAGGTTTTTTTTACTAAAAACGCCTTCAATAAT-TCTCTAAT
1 TAAAAAATTTTAAAGAATTATTGAAGGTGTTTTGTACAAAAAACACCTTCAATAATCTC-CTAAT
* * * * *
14467512 AAAAAATT-ATAGTGAATTATTGAAGGCATTTTTTACAAAAAATACCTTCAATAATC-CCTCG
65 AAAAAATTGAAAGAG-ATTATTGAAGGCATTTTCTACAAAAAACACCTTCAATAATCATCT-G
** * * * * * * * *
14467573 TCCAAAA-TTGAAAAAGATTATTGAAAGTATTTT-TAGTAAACAACATCTTCAATAATCTCCTCA
1 TAAAAAATTTTAAAGA-ATTATTGAAGGTGTTTTGTA-CAAAAAACACCTTCAATAATCTCCTAA
* * * * ** *
14467636 T-CAAAATTTAAAGAGATTATTGAAGGCGTTGTCTACCTAAAACGCCTTCAATAAT
64 TAAAAAATTGAAAGAGATTATTGAAGGCATTTTCTACAAAAAACACCTTCAATAAT
14467691 TTCCTAAAAA
Statistics
Matches: 194, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
124 54 0.28
125 138 0.71
126 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (125 bp):
TAAAAAATTTTAAAGAATTATTGAAGGTGTTTTGTACAAAAAACACCTTCAATAATCTCCTAATA
AAAAATTGAAAGAGATTATTGAAGGCATTTTCTACAAAAAACACCTTCAATAATCATCTG
Found at i:14473941 original size:161 final size:159
Alignment explanation
Indices: 14473732--14474469 Score: 560
Period size: 161 Copynumber: 4.6 Consensus size: 159
14473722 ATTTACAGTT
* * * * *
14473732 ATTGTTCTATTTTAATATTTTTGATAGTTTCAATACATGAAATTAAACTTATCCAAATTATTGAA
1 ATTGTTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCC-AATTATTGAA
* * *
14473797 CTTAGTTTCCACAGTTGATATGTATGAAAAAGTTATTGTTTATATCTATTTAGGACATTTTATGC
65 CTT-GTTTTCACAGTTGATATGTATGAAAAAGTTATCGTTTACATCTATTTAGGACATTTTATGC
* * *
14473862 TGTTAATAGGTAAAAATACAAATTTGGACAA
129 TGTTAAAAAGCAAAAATACAAATTTGGACAA
* * * * *
14473893 ATTGTTCTATTTTATTAGTTTGGTTAGCTCCAATACGTGATATTAAACTTGTCCGATTGATTGAA
1 ATTGTTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAATT-ATTGAA
* * * * *
14473958 CTTGGTTTTCATAGTTGATATGTGA-GAAAAAGTTATCGTTTACATTTGTTTAAGACTTTTTATG
65 CTT-GTTTTCACAGTTGATATGT-ATGAAAAAGTTATCGTTTACATCTATTTAGGACATTTTATG
* * *****
14474022 CTGTTAAAAAGCAAACATGCAAATTTGTTGTT
128 CTGTTAAAAAGCAAAAATACAAATTTGGACAA
* * * * *
14474054 ATTGTTCTATTTTAATAGTTTGCATAGCTTTAATACATAATATTAAACTTGTCGGAATAATTGAA
1 ATTGTTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTC-CAATTATTGAA
* ** * *
14474119 CTTGATTTTCACAAG-TGATATGTGTGAAAAAACTAACGTTTACGTCTATTTAGGACATTTTTAT
65 CTTG-TTTTCAC-AGTTGATATGTATGAAAAAGTTATCGTTTACATCTATTTAGGACA-TTTTAT
* * * * *
14474183 -TTCGTTAAAAGGC-AAAATGCAAATTT-GATATT
127 GCT-GTTAAAAAGCAAAAATACAAATTTGGACA-A
* * * * ** **
14474215 ATTGTT-TCATTTTAACAATTTGGCTAGCTTCAATACATGATATTAAATTTGTTTGAATGGTTGA
1 ATTGTTCT-ATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTG-TCCAATTATTGA
* ** * * * **
14474279 ACTTGATTTTTATGGTTGATATGTGTGAACAAGTTGTCGTTTATGTCTATTTAGGACTATTTT-T
64 ACTTG-TTTTCACAGTTGATATGTATGAAAAAGTTATCGTTTACATCTATTTAGGAC-ATTTTAT
* * * *
14474343 ACCGTTAAAAGGCAAAAATACAAATTT-G-CTATT
127 GCTGTTAAAAAGCAAAAATACAAATTTGGAC-A-A
** ** * * * * *
14474376 ATTAATCTATTTTAACGGTTTGGATGGCTTCAATACATGATATTAAATTTTTTCGAATGATTGAA
1 ATTGTTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAA-CTTGTCCAATTATTGAA
* *
14474441 CTTGGTTTTCA-TGATTGATATGTGTGAAA
65 CTT-GTTTTCACAG-TTGATATGTATGAAA
14474470 GGCCCAAATG
Statistics
Matches: 466, Mismatches: 91, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
160 18 0.04
161 421 0.90
162 27 0.06
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (159 bp):
ATTGTTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCAATTATTGAAC
TTGTTTTCACAGTTGATATGTATGAAAAAGTTATCGTTTACATCTATTTAGGACATTTTATGCTG
TTAAAAAGCAAAAATACAAATTTGGACAA
Found at i:14474208 original size:322 final size:320
Alignment explanation
Indices: 14473720--14474469 Score: 735
Period size: 322 Copynumber: 2.3 Consensus size: 320
14473710 TAATAGGTAA
* * *
14473720 AAATTTACAGTTATTGTTCTATTTTAATATTTTTGATAG-TTTCAATACATGAA-ATTAAACTTA
1 AAATTTGCTGTTATTGTTCTATTTTAATA-GTTTGATAGCTTT-AATACAT-AATATTAAACTTA
* * * * ** ** *
14473783 TCCAAATTATTGAACTT-AGTTTC-CACAGTTGATATGTATGAAAAAGTTATTGTTTATATCTAT
63 T-CGAATAATTGAACTTGATTTTCACA-AG-TGATATGTGTGAAAAAACTAACGTTTACATCTAT
* **
14473846 TTAGGACATTTTATGCTGTTAATAGGTAAAAATACAAATTTGGACA-AATTG-TTCTATTTTATT
125 TTAGGACATTTTATGCTGTTAAAAGGTAAAAATACAAATTT-GACATAATTGTTTC-ATTTTAAC
* * * * *
14473909 AGTTTGGTTAGCTCCAATACGTGATATTAAACTTGTCCGATTGATTGAACTTGGTTTTCATAGTT
188 AATTTGGCTAGCTCCAATACATGATATTAAACTTGTCCGAATGATTGAACTTGATTTTCATAGTT
* * * * *
14473974 GATATGTGAGAAAAAGTTATCGTTTACATTTGTTTAAGACT-TTTTATGCTGTTAAAAAGCAAAC
253 GATATGTGAGAAAAAGTTATCGTTTACATCTATTTAAGACTATTTT-TACCGTTAAAAAGCAAAA
*
14474038 ATGC
317 ATAC
* *
14474042 AAATTTGTTGTTATTGTTCTATTTTAATAGTTTGCATAGCTTTAATACATAATATTAAACTTGTC
1 AAATTTGCTGTTATTGTTCTATTTTAATAGTTTG-ATAGCTTTAATACATAATATTAAACTTATC
*
14474107 GGAATAATTGAACTTGATTTTCACAAGTGATATGTGTGAAAAAACTAACGTTTACGTCTATTTAG
65 -GAATAATTGAACTTGATTTTCACAAGTGATATGTGTGAAAAAACTAACGTTTACATCTATTTAG
* * * * *
14474172 GACATTTTTAT-TTCGTTAAAAGG-CAAAATGCAAATTTGATATTATTGTTTCATTTTAACAATT
129 GACA-TTTTATGCT-GTTAAAAGGTAAAAATACAAATTTGACATAATTGTTTCATTTTAACAATT
* * ** * * *
14474235 TGGCTAGCTTCAATACATGATATTAAATTTGTTTGAATGGTTGAACTTGATTTTTATGGTTGATA
192 TGGCTAGCTCCAATACATGATATTAAACTTGTCCGAATGATTGAACTTGATTTTCATAGTTGATA
* * * ** * *
14474300 TGTGTGAACAAGTTGTCGTTTATGTCTATTTAGGACTATTTTTACCGTTAAAAGGCAAAAATAC
257 TGTGAGAAAAAGTTATCGTTTACATCTATTTAAGACTATTTTTACCGTTAAAAAGCAAAAATAC
* ** ** * * * * *
14474364 AAATTTGCTATTATTAATCTATTTTAACGGTTTGGATGGCTTCAATACATGATATTAAATTTTTT
1 AAATTTGCTGTTATTGTTCTATTTTAATAGTTT-GATAGCTTTAATACATAATATTAAA-CTTAT
* * ** *
14474429 CGAATGATTGAACTTGGTTTTCATGATTGATATGTGTGAAA
64 CGAATAATTGAACTTGATTTTCACAAGTGATATGTGTGAAA
14474470 GGCCCAAATG
Statistics
Matches: 351, Mismatches: 64, Indels: 26
0.80 0.15 0.06
Matches are distributed among these distances:
321 10 0.03
322 303 0.86
323 36 0.10
324 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (320 bp):
AAATTTGCTGTTATTGTTCTATTTTAATAGTTTGATAGCTTTAATACATAATATTAAACTTATCG
AATAATTGAACTTGATTTTCACAAGTGATATGTGTGAAAAAACTAACGTTTACATCTATTTAGGA
CATTTTATGCTGTTAAAAGGTAAAAATACAAATTTGACATAATTGTTTCATTTTAACAATTTGGC
TAGCTCCAATACATGATATTAAACTTGTCCGAATGATTGAACTTGATTTTCATAGTTGATATGTG
AGAAAAAGTTATCGTTTACATCTATTTAAGACTATTTTTACCGTTAAAAAGCAAAAATAC
Found at i:14475826 original size:33 final size:33
Alignment explanation
Indices: 14475770--14475864 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
14475760 TAAACACCAC
* *
14475770 TAAATTTAGGGATATTTTCTTATATAAATATCGT
1 TAAA-TTAGCGATATTTTTTTATATAAATATCGT
14475804 TAAATTAGCGATATTTTTTTATATAAATATCGT
1 TAAATTAGCGATATTTTTTTATATAAATATCGT
* *
14475837 TAAATTAACGATA-TTTTTTATACAAATA
1 TAAATTAGCGATATTTTTTTATATAAATA
14475865 CAACAATGAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
32 14 0.25
33 39 0.68
34 4 0.07
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.46
Consensus pattern (33 bp):
TAAATTAGCGATATTTTTTTATATAAATATCGT
Found at i:14476634 original size:21 final size:21
Alignment explanation
Indices: 14476612--14476699 Score: 59
Period size: 21 Copynumber: 4.0 Consensus size: 21
14476602 ATTAATTTTG
*
14476612 ATAAAATTAAAAATAATGATGATG
1 ATAAAATTAAAAATAAT-A--ATA
* ** *
14476636 ATAAGATTAATTATTATAATA
1 ATAAAATTAAAAATAATAATA
* *
14476657 ATAAAATTAAATATTATAATA
1 ATAAAATTAAAAATAATAATA
* * *
14476678 ATAAAAATAAAATTAATGATA
1 ATAAAATTAAAAATAATAATA
14476699 A
1 A
14476700 AATATGTGTT
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
21 38 0.73
23 1 0.02
24 13 0.25
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (21 bp):
ATAAAATTAAAAATAATAATA
Found at i:14477585 original size:2 final size:2
Alignment explanation
Indices: 14477578--14477710 Score: 164
Period size: 2 Copynumber: 67.5 Consensus size: 2
14477568 TCAGTCCCGT
* * * *
14477578 TA TA TA TA TG TA CA TA TA TA TA TA TA TG TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
14477620 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T- TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
14477661 CTA -A TA TG TA TA TA TG TA TA T- TA TA TA TA TA TA TA TA TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14477702 TA TA TA TA T
1 TA TA TA TA T
14477711 TGGTAGATAA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
1 3 0.03
2 107 0.96
3 2 0.02
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:14478107 original size:29 final size:29
Alignment explanation
Indices: 14478053--14478108 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
14478043 TTTTTCAGTG
*
14478053 ATTATAATTTGATTATGATATAATAATTA
1 ATTATAATTTGATTATGATAAAATAATTA
14478082 ATTATTAA-TTGATTAT-ATAAATATAAT
1 ATTA-TAATTTGATTATGATAAA-ATAAT
14478109 ATTTGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 4 0.17
29 17 0.71
30 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.48
Consensus pattern (29 bp):
ATTATAATTTGATTATGATAAAATAATTA
Found at i:14478489 original size:26 final size:25
Alignment explanation
Indices: 14478442--14478497 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
14478432 AATTTTTCTT
14478442 AAATATGTATGTATTTACTATTCAAA
1 AAATATGTATGTATTTA-TATTCAAA
14478468 AAATCATGTATGTATTGT-TATTCAAA
1 AAAT-ATGTATGTATT-TATATTCAAA
14478494 AAAT
1 AAAT
14478498 TCAGTTAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 16 0.57
27 11 0.39
28 1 0.04
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (25 bp):
AAATATGTATGTATTTATATTCAAA
Found at i:14481780 original size:18 final size:17
Alignment explanation
Indices: 14481757--14481792 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
14481747 TGATAATGAA
*
14481757 AATTAAATTGTAATTGAT
1 AATTAAATT-AAATTGAT
14481775 AATTAAATTAAATTGAT
1 AATTAAATTAAATTGAT
14481792 A
1 A
14481793 TTGATAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (17 bp):
AATTAAATTAAATTGAT
Found at i:14481785 original size:23 final size:24
Alignment explanation
Indices: 14481740--14481798 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
14481730 CTAATTTTAT
*
14481740 TTGATAGTGATAATGAAAATTAAA
1 TTGATATTGATAATGAAAATTAAA
*
14481764 TTG-TAATTGATAAT-TAAATTAAA
1 TTGAT-ATTGATAATGAAAATTAAA
14481787 TTGATATTGATA
1 TTGATATTGATA
14481799 GTTTTTGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.41
Consensus pattern (24 bp):
TTGATATTGATAATGAAAATTAAA
Found at i:14489175 original size:2 final size:2
Alignment explanation
Indices: 14489168--14489207 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
14489158 TAAAGAAAGG
* * *
14489168 AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT CT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14489208 TTTTATTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14491043 original size:2 final size:2
Alignment explanation
Indices: 14491001--14491030 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14490991 AGCCTTATTA
14491001 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14491031 GTATGCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14492489 original size:29 final size:29
Alignment explanation
Indices: 14492440--14492495 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
14492430 TCTAAAAATA
*
14492440 TTTAGAAAAATAAAATATGAAAAAAGAAT
1 TTTAGAAAAATAAAAAATGAAAAAAGAAT
*
14492469 TTTA-AAAAATAAAAAATTGAATAAAGA
1 TTTAGAAAAATAAAAAA-TGAAAAAAGA
14492496 GGAAGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (29 bp):
TTTAGAAAAATAAAAAATGAAAAAAGAAT
Found at i:14492513 original size:15 final size:15
Alignment explanation
Indices: 14492493--14492524 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14492483 AATTGAATAA
14492493 AGAGGAAGAAGAAAG
1 AGAGGAAGAAGAAAG
*
14492508 AGAGGAAGAAGATAG
1 AGAGGAAGAAGAAAG
14492523 AG
1 AG
14492525 CAAGGAACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.03
Consensus pattern (15 bp):
AGAGGAAGAAGAAAG
Found at i:14494545 original size:17 final size:16
Alignment explanation
Indices: 14494523--14494562 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
14494513 ACATTACAAC
*
14494523 AAATAATAACTTAATCA
1 AAATAATAA-ATAATCA
14494540 AAATAAATAAATAATCA
1 AAAT-AATAAATAATCA
14494557 AAATAA
1 AAATAA
14494563 AAAAATTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 14 0.67
18 5 0.24
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATAATAAATAATCA
Found at i:14494563 original size:17 final size:17
Alignment explanation
Indices: 14494534--14494568 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14494524 AATAATAACT
*
14494534 TAATCAAAATAAATAAA
1 TAATCAAAATAAAAAAA
14494551 TAATCAAAATAAAAAAA
1 TAATCAAAATAAAAAAA
14494568 T
1 T
14494569 TAGAATAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (17 bp):
TAATCAAAATAAAAAAA
Found at i:14495786 original size:44 final size:44
Alignment explanation
Indices: 14495639--14495926 Score: 162
Period size: 44 Copynumber: 6.6 Consensus size: 44
14495629 TATCAAAATA
* * ** * * *
14495639 GCTCAATAACTTTTGAAAAATATAAAAGGCTTTTCTAAACTGAA
1 GCTCAACAACTTTTGAAAAATTTAAAAGGCTCATCTTATCTGAG
* * * * * **
14495683 ACTCAACAAATTTAG-AACATTTAAAAAGCTCATC-TAAAT-AG
1 GCTCAACAACTTTTGAAAAATTTAAAAGGCTCATCTTATCTGAG
* *
14495724 GCTTAACAACTTTGGAAAAATTTAAAAGGCTCATCTTATCTGAG
1 GCTCAACAACTTTTGAAAAATTTAAAAGGCTCATCTTATCTGAG
14495768 GCTCAACAACTTTTG-AAAATTTATAAA-GCTTCA-CTTAT-TGGAG
1 GCTCAACAACTTTTGAAAAATTTA-AAAGGC-TCATCTTATCT-GAG
* * * * ** *
14495811 GCTCAATAACTTTTGGATAATTTAAAAAGCTTCA-CCAATCAGAG
1 GCTCAACAACTTTTGAAAAATTTAAAAGGC-TCATCTTATCTGAG
* * * ** * *
14495855 GCTCATCAATTTTTGAAAAATCATAAAAGGCTTTTCTCAT-TAAAG
1 GCTCAACAACTTTTGAAAAAT-TTAAAAGGCTCATCTTATCT-GAG
* * *
14495900 GCTTAATAACTTTTGAAAAATATAAAA
1 GCTCAACAACTTTTGAAAAATTTAAAA
14495927 AACTAATCTT
Statistics
Matches: 188, Mismatches: 44, Indels: 24
0.73 0.17 0.09
Matches are distributed among these distances:
41 12 0.06
42 21 0.11
43 52 0.28
44 74 0.39
45 29 0.15
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (44 bp):
GCTCAACAACTTTTGAAAAATTTAAAAGGCTCATCTTATCTGAG
Found at i:14496107 original size:43 final size:43
Alignment explanation
Indices: 14496060--14496173 Score: 110
Period size: 43 Copynumber: 2.7 Consensus size: 43
14496050 AAAGTTATGA
14496060 AACTTTTAATATTTTAAAATGGCTCTTTTCACCAAAA-CTCAAT
1 AACTTTTAA-ATTTTAAAATGGCTCTTTTCACCAAAAGCTCAAT
** * * * *
14496103 AACTTTTGAAAATAATAAAAT-ACTCCTCTCATCAAAAGCTCAAT
1 AACTTTT--AAATTTTAAAATGGCTCTTTTCACCAAAAGCTCAAT
14496147 AACTTTATAAATTTTAAAA-GGCT-TTTT
1 AACTTT-TAAATTTTAAAATGGCTCTTTT
14496174 AACAAAGGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
42 2 0.04
43 30 0.55
44 20 0.36
45 3 0.05
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (43 bp):
AACTTTTAAATTTTAAAATGGCTCTTTTCACCAAAAGCTCAAT
Found at i:14505910 original size:9 final size:9
Alignment explanation
Indices: 14505896--14505925 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
14505886 CTTCATCATA
14505896 TTTTCATTT
1 TTTTCATTT
14505905 TTTTCATTTT
1 TTTTCA-TTT
14505915 TTTTCATTT
1 TTTTCATTT
14505924 TT
1 TT
14505926 CAAGAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTCATTT
Found at i:14505917 original size:10 final size:10
Alignment explanation
Indices: 14505896--14505925 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
14505886 CTTCATCATA
14505896 TTTTCA-TTT
1 TTTTCATTTT
14505905 TTTTCATTTT
1 TTTTCATTTT
14505915 TTTTCATTTT
1 TTTTCATTTT
14505925 T
1 T
14505926 CAAGAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTCATTTT
Found at i:14506426 original size:15 final size:16
Alignment explanation
Indices: 14506406--14506435 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14506396 CTAAATTATT
14506406 TTCATTGTCT-TAATA
1 TTCATTGTCTATAATA
14506421 TTCATTGTCTATAAT
1 TTCATTGTCTATAAT
14506436 GTAGGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (16 bp):
TTCATTGTCTATAATA
Found at i:14509881 original size:18 final size:16
Alignment explanation
Indices: 14509842--14509880 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
14509832 TACCATCTAA
14509842 TGCTCTCATGATTTTT
1 TGCTCTCATGATTTTT
14509858 TGCTCTCATGATTTTT
1 TGCTCTCATGATTTTT
14509874 TGCTCTC
1 TGCTCTC
14509881 TTGCTTTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.23, G:0.13, T:0.54
Consensus pattern (16 bp):
TGCTCTCATGATTTTT
Found at i:14511298 original size:20 final size:19
Alignment explanation
Indices: 14511252--14511301 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
14511242 AAATCCATAA
14511252 AAGGGATCAATCACCCCAC
1 AAGGGATCAATCACCCCAC
14511271 ATAGGGGATCAATCA-CCCAGGC
1 A-A-GGGATCAATCACCCCA--C
14511293 AAGGGATCA
1 AAGGGATCA
14511302 TCCCCTCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 1 0.04
20 12 0.44
21 12 0.44
22 2 0.07
ACGTcount: A:0.36, C:0.28, G:0.24, T:0.12
Consensus pattern (19 bp):
AAGGGATCAATCACCCCAC
Found at i:14512432 original size:40 final size:40
Alignment explanation
Indices: 14512377--14512605 Score: 183
Period size: 40 Copynumber: 5.6 Consensus size: 40
14512367 CCCTAAATAG
*
14512377 AGGCACACTACTTTAAAAATTAAGGGTTCCTTCAACACAA
1 AGGCACACAACTTTAAAAATTAAGGGTTCCTTCAACACAA
* * * * **
14512417 AGGCATACGACTTTAAAAATTTAGGGCTT-ATTCAACATGA
1 AGGCACACAACTTTAAAAATTAAGGG-TTCCTTCAACACAA
* * * * * * *
14512457 AGGTACATAACTTAAAAAAAATTAAAGGCTCATTCAATACAA
1 AGGCACACAACTT--TAAAAATTAAGGGTTCCTTCAACACAA
* *
14512499 ATGCACACAACTTTAAAAATTAAAGGCTT-CTTCAACACAA
1 AGGCACACAACTTTAAAAATT-AAGGGTTCCTTCAACACAA
* * * * *
14512539 AGGCACACAAATTTAAAATAATTAAGGGCTCCTTAAATACGA
1 AGGCACACAACTTT-AAA-AATTAAGGGTTCCTTCAACACAA
* *
14512581 AGGTATACAACTTTAAAAATTAAGG
1 AGGCACACAACTTTAAAAATTAAGG
14512606 ATAATACCCA
Statistics
Matches: 145, Mismatches: 36, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
40 76 0.52
41 18 0.12
42 51 0.35
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.26
Consensus pattern (40 bp):
AGGCACACAACTTTAAAAATTAAGGGTTCCTTCAACACAA
Found at i:14512477 original size:82 final size:82
Alignment explanation
Indices: 14512391--14512603 Score: 246
Period size: 82 Copynumber: 2.6 Consensus size: 82
14512381 ACACTACTTT
* * * * * **
14512391 AAAAATTAAGGGTTCCTTCAACACAAAGGCATACGACTTTAAAAATTTAGGGCTTATTCAACATG
1 AAAAATTAAGGGCTCCTTCAATACAAAGGCATACAACTTTAAAAATTAAAGGCTTATTCAACACA
* * *
14512456 AAGGTACATAACTTAAA
66 AAGGCACACAAATTAAA
* * * * *
14512473 AAAAATTAAAGGCTCATTCAATACAAATGCACACAACTTTAAAAATTAAAGGCTTCTTCAACACA
1 AAAAATTAAGGGCTCCTTCAATACAAAGGCATACAACTTTAAAAATTAAAGGCTTATTCAACACA
*
14512538 AAGGCACACAAATTTAA
66 AAGGCACACAAATTAAA
* * * *
14512555 AATAATTAAGGGCTCCTTAAATACGAAGGTATACAACTTTAAAAATTAA
1 AAAAATTAAGGGCTCCTTCAATACAAAGGCATACAACTTTAAAAATTAA
14512604 GGATAATACC
Statistics
Matches: 107, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
82 107 1.00
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (82 bp):
AAAAATTAAGGGCTCCTTCAATACAAAGGCATACAACTTTAAAAATTAAAGGCTTATTCAACACA
AAGGCACACAAATTAAA
Found at i:14512599 original size:122 final size:121
Alignment explanation
Indices: 14512379--14512603 Score: 274
Period size: 122 Copynumber: 1.8 Consensus size: 121
14512369 CTAAATAGAG
* * * * * *
14512379 GCACACTACTTTAAAAATTAAGGGTTCCTTCAACACAAAGGCATACGACTTTAAAAATTTAGGGC
1 GCACACAACTTTAAAAATTAAGGCTTCCTTCAACACAAAGGCACACAAATTTAAAAATTAAGGGC
* * * *
14512444 TTATTCAACATGAAGGTACATAACTTAAAAAAAATTAAAGGCTCATTCAATACAAAT
66 TCATTAAACACGAAGGTACACAACTT-AAAAAAATTAAAGGCTCATTCAATACAAAT
14512501 GCACACAACTTTAAAAATTAAAGGCTT-CTTCAACACAAAGGCACACAAATTTAAAATAATTAAG
1 GCACACAACTTTAAAAATT-AAGGCTTCCTTCAACACAAAGGCACACAAATTT-AAA-AATTAAG
* * * *
14512565 GGCTCCTTAAATACGAAGGTATACAACTT-TAAAAATTAA
63 GGCTCATTAAACACGAAGGTACACAACTTAAAAAAATTAA
14512604 GGATAATACC
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
122 49 0.57
123 9 0.10
124 28 0.33
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (121 bp):
GCACACAACTTTAAAAATTAAGGCTTCCTTCAACACAAAGGCACACAAATTTAAAAATTAAGGGC
TCATTAAACACGAAGGTACACAACTTAAAAAAATTAAAGGCTCATTCAATACAAAT
Found at i:14520007 original size:20 final size:21
Alignment explanation
Indices: 14519982--14520034 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
14519972 ACAAAAACTA
14519982 AAAAATAATAAATAT-AATAT
1 AAAAATAATAAATATCAATAT
*
14520002 AAAAAT-ATCAATATCAATAT
1 AAAAATAATAAATATCAATAT
*
14520022 AAATA-AATAAATA
1 AAAAATAATAAATA
14520035 CAAAACTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 7 0.25
20 21 0.75
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAATAATAAATATCAATAT
Found at i:14521457 original size:142 final size:142
Alignment explanation
Indices: 14521201--14521486 Score: 563
Period size: 142 Copynumber: 2.0 Consensus size: 142
14521191 AAGACCATAA
14521201 ATTGTGAAAGTCCCTTCTGAAACCATTCGAAAGATAAAAGGACTGGCAAAGACTTTAAAGACCAA
1 ATTGTGAAAGTCCCTTCTGAAACCATTCGAAAGATAAAAGGACTGGCAAAGACTTTAAAGACCAA
14521266 AAAAACCAGTTTTCTATTTTTTTGGACCAACTTAAGTGATTCCTTTTTTGTCTTGTGCATACCGT
66 AAAAACCAGTTTTCTATTTTTTTGGACCAACTTAAGTGATTCCTTTTTTGTCTTGTGCATACCGT
14521331 TTCATGTTCTTC
131 TTCATGTTCTTC
*
14521343 ATTGTGAAAGTCCCTTCTGAAACCATTCGAAAGATAAAAGGGCTGGCAAAGACTTTAAAGACCAA
1 ATTGTGAAAGTCCCTTCTGAAACCATTCGAAAGATAAAAGGACTGGCAAAGACTTTAAAGACCAA
14521408 AAAAACCAGTTTTCTATTTTTTTGGACCAACTTAAGTGATTCCTTTTTTGTCTTGTGCATACCGT
66 AAAAACCAGTTTTCTATTTTTTTGGACCAACTTAAGTGATTCCTTTTTTGTCTTGTGCATACCGT
14521473 TTCATGTTCTTC
131 TTCATGTTCTTC
14521485 AT
1 AT
14521487 GTTTTTCTTT
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 143 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (142 bp):
ATTGTGAAAGTCCCTTCTGAAACCATTCGAAAGATAAAAGGACTGGCAAAGACTTTAAAGACCAA
AAAAACCAGTTTTCTATTTTTTTGGACCAACTTAAGTGATTCCTTTTTTGTCTTGTGCATACCGT
TTCATGTTCTTC
Found at i:14521716 original size:14 final size:13
Alignment explanation
Indices: 14521690--14521714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14521680 GGAAGTATTT
14521690 TTTTTTTTCTTTC
1 TTTTTTTTCTTTC
14521703 TTTTTTTTCTTT
1 TTTTTTTTCTTT
14521715 TCGGCTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTC
Found at i:14522131 original size:3 final size:3
Alignment explanation
Indices: 14522123--14522154 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
14522113 AGTTTTTTAC
14522123 ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT A
14522155 GTAATTGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14522461 original size:21 final size:21
Alignment explanation
Indices: 14522435--14522475 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14522425 AGAATTATTA
14522435 AATAATAAAATATTAATAAAT
1 AATAATAAAATATTAATAAAT
* *
14522456 AATAATAAAATTTTAGTAAA
1 AATAATAAAATATTAATAAA
14522476 AAGAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AATAATAAAATATTAATAAAT
Found at i:14530133 original size:14 final size:15
Alignment explanation
Indices: 14530102--14530131 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14530092 ATCATTCTTT
*
14530102 ATTTTTTTTGTATAA
1 ATTTTTTTTGAATAA
14530117 ATTTTTTTTGAATAA
1 ATTTTTTTTGAATAA
14530132 TTAATTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (15 bp):
ATTTTTTTTGAATAA
Found at i:14531337 original size:21 final size:20
Alignment explanation
Indices: 14531308--14531346 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14531298 TTTGTTATTT
14531308 TTATTATTTATTTATTTGGA
1 TTATTATTTATTTATTTGGA
*
14531328 TTATTGATTTTTTTATTTG
1 TTATT-ATTTATTTATTTG
14531347 TATAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (20 bp):
TTATTATTTATTTATTTGGA
Found at i:14532601 original size:17 final size:17
Alignment explanation
Indices: 14532579--14532614 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
14532569 TCAAATTGAG
14532579 TTTTTCTCTTTGAAAAA
1 TTTTTCTCTTTGAAAAA
14532596 TTTTTCTCTTTGAAAAA
1 TTTTTCTCTTTGAAAAA
14532613 TT
1 TT
14532615 CCTAAAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTTTCTCTTTGAAAAA
Found at i:14549608 original size:17 final size:17
Alignment explanation
Indices: 14549586--14549619 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14549576 TTCTTCCTAA
* *
14549586 CTTATTATTTCATTATT
1 CTTATTAATTAATTATT
14549603 CTTATTAATTAATTATT
1 CTTATTAATTAATTATT
14549620 AATATTGATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (17 bp):
CTTATTAATTAATTATT
Found at i:14549845 original size:12 final size:12
Alignment explanation
Indices: 14549824--14549852 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14549814 AATTCATAAT
14549824 AATA-ATAATCA
1 AATACATAATCA
14549835 AATACATAATCA
1 AATACATAATCA
14549847 AATACA
1 AATACA
14549853 AGGTTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (12 bp):
AATACATAATCA
Found at i:14553709 original size:20 final size:20
Alignment explanation
Indices: 14553681--14553719 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14553671 TAAATAATTG
* *
14553681 TTTATAATTTAATATTATTA
1 TTTAAAATTTAAAATTATTA
14553701 TTTAAAATTTAAAATTATT
1 TTTAAAATTTAAAATTATT
14553720 TCATTTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTAAAATTTAAAATTATTA
Found at i:14554168 original size:18 final size:17
Alignment explanation
Indices: 14554147--14554207 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 17
14554137 ATTAATTAAA
14554147 ATTTTTATTTTTATTAT
1 ATTTTTATTTTTATTAT
* *
14554164 GATTTGATATTTTAATTAT
1 -ATTT-TTATTTTTATTAT
14554183 ATTATTTATATTTTATATAT
1 ATT-TTTAT-TTTTAT-TAT
14554203 ATTTT
1 ATTTT
14554208 GAACATATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
18 10 0.29
19 19 0.54
20 6 0.17
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
ATTTTTATTTTTATTAT
Found at i:14554198 original size:11 final size:11
Alignment explanation
Indices: 14554149--14554207 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
14554139 TAATTAAAAT
*
14554149 TTTTATTTTTA
1 TTTTATTTATA
*
14554160 TTATGATTTGATA
1 TT-TTATTT-ATA
*
14554173 TTTTAATTATA
1 TTTTATTTATA
14554184 --TTATTTATA
1 TTTTATTTATA
*
14554193 TTTTATATATA
1 TTTTATTTATA
14554204 TTTT
1 TTTT
14554208 GAACATATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 8 0.21
11 17 0.45
12 9 0.24
13 4 0.11
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (11 bp):
TTTTATTTATA
Found at i:14555451 original size:35 final size:36
Alignment explanation
Indices: 14555412--14555485 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 36
14555402 ATGGAACATA
* * *
14555412 ATTAT-TTTTAAATAATTAAAAAATATTAAATTTAT
1 ATTATATTTCAAATAATAAAAAAATATTAAATATAT
*
14555447 ATTATAATTTCAAATAATAAAAAAATTTTAAATATAT
1 ATTAT-ATTTCAAATAATAAAAAAATATTAAATATAT
14555484 AT
1 AT
14555486 ACGTTATCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 5 0.15
37 28 0.85
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (36 bp):
ATTATATTTCAAATAATAAAAAAATATTAAATATAT
Found at i:14555479 original size:18 final size:18
Alignment explanation
Indices: 14555417--14555480 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
14555407 ACATAATTAT
*
14555417 TTTTAAATAATTAAAAAA
1 TTTTAAATAATAAAAAAA
* * ** *
14555435 TATTAAATTTATATTATAA
1 TTTTAAA-TAATAAAAAAA
*
14555454 TTTCAAATAATAAAAAAA
1 TTTTAAATAATAAAAAAA
14555472 TTTTAAATA
1 TTTTAAATA
14555481 TATATACGTT
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTTAAATAATAAAAAAA
Found at i:14556859 original size:21 final size:20
Alignment explanation
Indices: 14556808--14556859 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
14556798 AATAGTGATA
*
14556808 ATAAAATTAATTATTATAAT
1 ATAAAATTAAGTATTATAAT
*
14556828 ATAAAATTTAAGTATTGTAAT
1 ATAAAA-TTAAGTATTATAAT
14556849 AGTAAAATTAA
1 A-TAAAATTAA
14556860 AATTAATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 6 0.21
21 17 0.61
22 5 0.18
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (20 bp):
ATAAAATTAAGTATTATAAT
Found at i:14557126 original size:25 final size:26
Alignment explanation
Indices: 14557096--14557152 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
14557086 GTATTTATTT
*
14557096 ATTATTTTATTCTA-T-AATTATAAAA
1 ATTATTTTATTATACTAAATTA-AAAA
14557121 ATTA-TTTATTATACTAAATTAAAAA
1 ATTATTTTATTATACTAAATTAAAAA
*
14557146 TTTATTT
1 ATTATTT
14557153 GAAAATTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 8 0.30
25 12 0.44
26 7 0.26
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTATTTTATTATACTAAATTAAAAA
Found at i:14559878 original size:18 final size:19
Alignment explanation
Indices: 14559852--14559889 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
14559842 CTAATCCTTG
14559852 TTTTACTTTTACTTT-TTC
1 TTTTACTTTTACTTTATTC
*
14559870 TTTTTCTTTTACTTTATTC
1 TTTTACTTTTACTTTATTC
14559889 T
1 T
14559890 CTCTTTCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTACTTTTACTTTATTC
Found at i:14563068 original size:58 final size:57
Alignment explanation
Indices: 14563003--14563222 Score: 275
Period size: 57 Copynumber: 3.8 Consensus size: 57
14562993 AGTTTTAGTA
*
14563003 CAAGAAAAATTGATACTTTCAACTTTT-TCCCAAAATATTTTTTAGAAACTTTAATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCT-CAAAAATATTTTTTAGAAACTTT-ATTTT
* * * * * * *
14563061 GAAG-AAAATTGATACTTTTAACATTTCCTCGAAATTAATTTTTAGAAAATTTATTTT
1 CAAGAAAAATTGATACTTTCAAC-TTTTCTCAAAAATATTTTTTAGAAACTTTATTTT
*
14563118 CAAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTAAAAAAC-TTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTT-AGAAACTTTATTTT
* *
14563175 CAAGGAAATTTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAA
1 CAAGAAAAATTGATACTTTCAAC-TTTTCTCAAAAATATTTTTTAGAA
14563223 TCAAAAACAT
Statistics
Matches: 139, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
57 72 0.52
58 66 0.47
59 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (57 bp):
CAAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTAGAAACTTTATTTT
Found at i:14563139 original size:115 final size:115
Alignment explanation
Indices: 14563003--14563222 Score: 302
Period size: 115 Copynumber: 1.9 Consensus size: 115
14562993 AGTTTTAGTA
* * *
14563003 CAAGAAAAATTGATACTTTCAACTTTT-TCCCAAAATATTTTTT-AGAAACTTTAATTTTGAA-G
1 CAAGAAAAATTGATACTTTCAACTTTTCT-CAAAAATATTTTTTAAAAAAC-TT-ATTTTCAAGG
* * *
14563065 AAAATTGATACTTTTAACATTTCCTCGAAATTAATTTTTAGAAAATTTATTTT
63 AAAATTGATACTTTCAACATTTCCTCAAAAATAATTTTTAGAAAATTTATTTT
14563118 CAAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTCAAGGAAA
1 CAAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTCAAGGAAA
* * * *
14563183 TTTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAA
66 ATTGATACTTTCAACATTTCCTCAAAAATAATTTTTAGAA
14563223 TCAAAAACAT
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
114 7 0.08
115 79 0.86
116 6 0.07
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (115 bp):
CAAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTCAAGGAAA
ATTGATACTTTCAACATTTCCTCAAAAATAATTTTTAGAAAATTTATTTT
Found at i:14563235 original size:77 final size:78
Alignment explanation
Indices: 14563146--14563296 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 78
14563136 TCAACTTTTC
* ** *
14563146 TCAAAAATATTTTTTAAAAAACTTATTTTCAAGGAAATTTGATACTTTCAACTTTTTCTCAAAAA
1 TCAAAAACATTTTTTAAAAAACTTATTTTCAAGGAAAACTAATACTTTCAACTTTTTCTCAAAAA
14563211 TATT-TTTTAGAA
66 TATTGTTTTAGAA
*
14563223 TCAAAAACATTTTTTAAAAAACTTATTTTCAAGGAAAACTAATACTTTCAACTTTTTCTTAAAAA
1 TCAAAAACATTTTTTAAAAAACTTATTTTCAAGGAAAACTAATACTTTCAACTTTTTCTCAAAAA
14563288 TATTGTTTT
66 TATTGTTTT
14563297 TTGAATTTTA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 64 0.94
78 4 0.06
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (78 bp):
TCAAAAACATTTTTTAAAAAACTTATTTTCAAGGAAAACTAATACTTTCAACTTTTTCTCAAAAA
TATTGTTTTAGAA
Found at i:14563404 original size:3 final size:3
Alignment explanation
Indices: 14563396--14563424 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14563386 CTAATCAATA
14563396 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14563425 ATAAATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14563407 original size:6 final size:6
Alignment explanation
Indices: 14563349--14563424 Score: 59
Period size: 6 Copynumber: 12.7 Consensus size: 6
14563339 AGATAAAAAT
* * ** *
14563349 ATAATA A-AATA A-AATA AAAATA CTAAATA ATTCTA AT-CTA ATCAATAA
1 ATAATA ATAATA ATAATA ATAATA AT-AATA ATAATA ATAATA AT-AAT-A
14563397 ATAATA ATAATA ATAATA ATAATA ATAA
1 ATAATA ATAATA ATAATA ATAATA ATAA
14563425 ATAAATAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
5 15 0.25
6 32 0.54
7 9 0.15
8 3 0.05
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (6 bp):
ATAATA
Found at i:14563410 original size:9 final size:9
Alignment explanation
Indices: 14563349--14563424 Score: 59
Period size: 9 Copynumber: 8.4 Consensus size: 9
14563339 AGATAAAAAT
14563349 ATAATAA-A
1 ATAATAATA
14563357 ATAA-AATA
1 ATAATAATA
* *
14563365 AAAATACTAA
1 ATAATAAT-A
**
14563375 ATAATTCTA
1 ATAATAATA
*
14563384 AT-CTAATCA
1 ATAATAAT-A
14563393 ATAAATAATA
1 AT-AATAATA
14563403 ATAATAATA
1 ATAATAATA
14563412 ATAATAATA
1 ATAATAATA
14563421 ATAA
1 ATAA
14563425 ATAAATAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
7 2 0.04
8 10 0.19
9 28 0.52
10 10 0.19
11 4 0.07
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (9 bp):
ATAATAATA
Found at i:14563923 original size:24 final size:23
Alignment explanation
Indices: 14563888--14563941 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
14563878 CTGAAATCTG
* *
14563888 AAAATTTTTCAAAAATTTCCAGAA
1 AAAATTTGTCAAAAA-TTCCAAAA
*
14563912 AAAATTTGTCAAAAATTCTAAAA
1 AAAATTTGTCAAAAATTCCAAAA
14563935 AAAATTT
1 AAAATTT
14563942 CCACCGATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAATTTGTCAAAAATTCCAAAA
Found at i:14563925 original size:23 final size:24
Alignment explanation
Indices: 14563888--14563941 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
14563878 CTGAAATCTG
* * *
14563888 AAAATTTTTCAAAAATTTCCAGAA
1 AAAATTTGTCAAAAAATTCCAAAA
*
14563912 AAAATTTGTC-AAAAATTCTAAAA
1 AAAATTTGTCAAAAAATTCCAAAA
14563935 AAAATTT
1 AAAATTT
14563942 CCACCGATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (24 bp):
AAAATTTGTCAAAAAATTCCAAAA
Found at i:14564280 original size:4 final size:4
Alignment explanation
Indices: 14564243--14564474 Score: 71
Period size: 4 Copynumber: 58.8 Consensus size: 4
14564233 ATTAAAAGAA
* * * * *
14564243 AAAT AATT AGAT AAAT AAA- AATAT CAAT AGAT AAAT -AAT -AAT ATAT
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * * *
14564289 AAAT AGAT AAAT ACAT ACAT ATACT -AAC AGAT AAAT -AAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT
* **
14564336 ATATAT TAAT AAAT AGTAAT -AAT AAAT AAAT AAAT -AAT AAAT GCAT
1 A-A-AT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* *
14564382 AAGAT ACAA- ACA- AAAT AAAT AAAAT AAA- ATAT AAAT --AT AAAT AAAT
1 AA-AT A-AAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * *
14564428 AAA- AATAA AAAT AAA- ATAT AAA- ACAT AAAAT AAAAT AAAA AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT AAAT AAAT AAA
14564475 ATGAGCTTAC
Statistics
Matches: 167, Mismatches: 37, Indels: 48
0.66 0.15 0.19
Matches are distributed among these distances:
2 2 0.01
3 29 0.17
4 108 0.65
5 22 0.13
6 6 0.04
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:14564320 original size:24 final size:22
Alignment explanation
Indices: 14564251--14564329 Score: 83
Period size: 22 Copynumber: 3.6 Consensus size: 22
14564241 AAAAATAATT
* *
14564251 AGATAAATAA-AA-ATATCAAT
1 AGATAAATAATAATATATAAAC
*
14564271 AGATAAATAATAATATATAAAT
1 AGATAAATAATAATATATAAAC
14564293 AGATAAATACATACATATACT-AAC
1 AGATAAATA-ATA-ATATA-TAAAC
14564317 AGATAAATAATAA
1 AGATAAATAATAA
14564330 ATAAATATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
20 10 0.19
21 2 0.04
22 17 0.33
23 6 0.12
24 16 0.31
25 1 0.02
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (22 bp):
AGATAAATAATAATATATAAAC
Found at i:14564408 original size:5 final size:5
Alignment explanation
Indices: 14564393--14564476 Score: 79
Period size: 5 Copynumber: 17.0 Consensus size: 5
14564383 AGATACAAAC
14564393 AAAAT -AAAT AAAAT AAAAT ATAAAT ATAAAT -AAAT AAAAAT AAAAAT
1 AAAAT AAAAT AAAAT AAAAT A-AAAT A-AAAT AAAAT -AAAAT -AAAAT
* *
14564440 AAAAT ATAA- AACAT AAAAT AAAAT -AAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
14564477 GAGCTTACCC
Statistics
Matches: 68, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
4 16 0.24
5 32 0.47
6 20 0.29
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:14564425 original size:26 final size:26
Alignment explanation
Indices: 14564394--14564474 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
14564384 GATACAAACA
14564394 AAATAAATAAAATAAAATATAAATAT
1 AAATAAATAAAATAAAATATAAATAT
14564420 AAATAAATAAAAATAAAA-ATAAAATAT
1 AAATAAAT-AAAATAAAATAT-AAATAT
* * *
14564447 AAA-ACATAAAATAAAATAAAAAAAT
1 AAATAAATAAAATAAAATATAAATAT
14564472 AAA
1 AAA
14564475 ATGAGCTTAC
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
25 17 0.35
26 14 0.29
27 18 0.37
ACGTcount: A:0.78, C:0.01, G:0.00, T:0.21
Consensus pattern (26 bp):
AAATAAATAAAATAAAATATAAATAT
Found at i:14564470 original size:27 final size:28
Alignment explanation
Indices: 14564394--14564476 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 28
14564384 GATACAAACA
*
14564394 AAATAAATAAAATAAAAT--ATAAATAT
1 AAATAAATAAAATAAAATAAAAAAATAT
*
14564420 AAATAAATAAAA-ATAAA-AATAAAATAT
1 AAATAAATAAAATA-AAATAAAAAAATAT
*
14564447 AAA-ACATAAAATAAAATAAAAAAATA-
1 AAATAAATAAAATAAAATAAAAAAATAT
14564473 AAAT
1 AAAT
14564477 GAGCTTACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
25 1 0.02
26 28 0.60
27 18 0.38
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.22
Consensus pattern (28 bp):
AAATAAATAAAATAAAATAAAAAAATAT
Found at i:14564475 original size:6 final size:6
Alignment explanation
Indices: 14564398--14564475 Score: 70
Period size: 6 Copynumber: 12.3 Consensus size: 6
14564388 CAAACAAAAT
*
14564398 AAAT-A AAATAA AATATAA ATATAAA TAAATAA AAATAA AAATAA AATATAA
1 AAATAA AAATAA AA-ATAA AAAT-AA -AAATAA AAATAA AAATAA AA-ATAA
*
14564449 AACAT-A AAATAA AATAAAA AAATAA AA
1 AA-ATAA AAATAA AA-ATAA AAATAA AA
14564476 TGAGCTTACC
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
5 6 0.10
6 30 0.49
7 22 0.36
8 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.00, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:14564710 original size:46 final size:46
Alignment explanation
Indices: 14564651--14564738 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
14564641 AAATTCTGAT
*
14564651 CAAAGCTCCTCTAAGCAGAGACTCAATGACTTTGAAAATAAATAAA
1 CAAAGCTCCTCTAAGCAGAGACTCAATGACTTCGAAAATAAATAAA
* * *
14564697 CAAAGCTCTTCTAATCAGAGGCTCAATGACTTCGAAAATAAA
1 CAAAGCTCCTCTAAGCAGAGACTCAATGACTTCGAAAATAAA
14564739 CGGCTCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (46 bp):
CAAAGCTCCTCTAAGCAGAGACTCAATGACTTCGAAAATAAATAAA
Found at i:14564755 original size:40 final size:39
Alignment explanation
Indices: 14564701--14564848 Score: 125
Period size: 43 Copynumber: 3.5 Consensus size: 39
14564691 AATAAACAAA
*
14564701 GCTCTTCTAATCAGAGGCTCAATGACTTCGAAAATAAACG
1 GCTCTT-TAATCAGAGGCTCAACGACTTCGAAAATAAACG
* * **
14564741 GCTCATTTAATCAGAGGCTCAACGACTTTTGGAGAATAAAATT
1 GCTC-TTTAATCAGAGGCTCAACGAC--TTCGAAAAT-AAACG
* * * *
14564784 GCTCCTCTAATCAGAGGCTCTACGATTTTGAAAAATAAACAAG
1 GCT-CTTTAATCAGAGGCTCAACGACTTCG-AAAATAAAC--G
14564827 GCTCTTCTAATCAGAGGCTCAA
1 GCTCTT-TAATCAGAGGCTCAA
14564849 TAACTTTTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
40 22 0.26
41 8 0.09
42 13 0.15
43 41 0.48
44 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (39 bp):
GCTCTTTAATCAGAGGCTCAACGACTTCGAAAATAAACG
Found at i:14564802 original size:43 final size:41
Alignment explanation
Indices: 14564701--14564955 Score: 203
Period size: 41 Copynumber: 6.1 Consensus size: 41
14564691 AATAAACAAA
* ** * **
14564701 GCTCTTCTAATCAGAGGCTCAATGACTTCG-AAAATAAACG
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATT
* * * * *
14564741 GCTCATTTAATCAGAGGCTCAACGACTTTTGGAGAATAAAATT
1 GCTCCTCTAATCAGAGGCTCAACAAC-TTTGAAAAAT-AAATT
* * * **
14564784 GCTCCTCTAATCAGAGGCTCTACGATTTTGAAAAATAAACAAG
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAT-AA-ATT
* * *
14564827 GCTCTTCTAATCAGAGGCTCAATAACTTTTAAAAATAAATT
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATT
* * *
14564868 GCTCCTCTAAAT-AAAGGCATC-ACAACTTTGAAGAATAGATT
1 GCTCCTCT-AATCAGAGGC-TCAACAACTTTGAAAAATAAATT
* *
14564909 GCTTCTCTAATCAGAGGCATC-ACAACTTTGGAAAATAAATT
1 GCTCCTCTAATCAGAGGC-TCAACAACTTTGAAAAATAAATT
14564950 GCTCCT
1 GCTCCT
14564956 TAACAATCAT
Statistics
Matches: 173, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
40 26 0.15
41 69 0.40
42 22 0.13
43 56 0.32
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (41 bp):
GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATT
Found at i:14564898 original size:84 final size:83
Alignment explanation
Indices: 14564731--14564955 Score: 221
Period size: 84 Copynumber: 2.7 Consensus size: 83
14564721 AATGACTTCG
* *
14564731 AAAATAAAC-GGCTCATT-TAATCAGAGGCTCAACGACTTTTGGAGAATAAAATTGCTCCTCTAA
1 AAAATAAACAGGCTC-TTCTAATCAGAGGCTCAACAACTTTT-GAAAAT-AAATTGCTCCTCTAA
* * *
14564794 TCAGAGGCTCTACGATTTTGA
63 TCAAAGGCTCTACAACTTTGA
* *
14564815 AAAATAAACAAGGCTCTTCTAATCAGAGGCTCAATAACTTTTAAAAATAAATTGCTCCTCTAAAT
1 AAAATAAAC-AGGCTCTTCTAATCAGAGGCTCAACAACTTTTGAAAATAAATTGCTCCTCT-AAT
14564880 -AAAGGCATC-ACAACTTTGA
64 CAAAGGC-TCTACAACTTTGA
* * ** *
14564899 AGAATAGA-TTGCT-TCTCTAATCAGAGGCATC-ACAACTTTGGAAAATAAATTGCTCCT
1 AAAATAAACAGGCTCT-TCTAATCAGAGGC-TCAACAACTTTTGAAAATAAATTGCTCCT
14564956 TAACAATCAT
Statistics
Matches: 120, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
81 1 0.01
82 39 0.32
83 2 0.02
84 41 0.34
85 11 0.09
86 26 0.22
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (83 bp):
AAAATAAACAGGCTCTTCTAATCAGAGGCTCAACAACTTTTGAAAATAAATTGCTCCTCTAATCA
AAGGCTCTACAACTTTGA
Found at i:14564903 original size:126 final size:125
Alignment explanation
Indices: 14564690--14564926 Score: 300
Period size: 126 Copynumber: 1.9 Consensus size: 125
14564680 CTTTGAAAAT
* * * *
14564690 AAATAAACAAAGCTCTTCTAATCAGAGGCTCAATGACTTCGAAAATAAACGGCTCATTTAATCAG
1 AAATAAACAAAGCTCTTCTAATCAGAGGCTCAATAACTTCAAAAATAAACGGCTCATTAAATCAA
* *
14564755 AGGCTCAACGACTTTTGGAGAATAAAATTGCTCCTCTAATCAGAGGCTCTACGATTTTGAA
66 AGGCTCAACAACTTTTGAAGAAT-AAATTGCTCCTCTAATCAGAGGCTCTACGATTTTGAA
* * ** *
14564816 AAATAAACAAGGCTCTTCTAATCAGAGGCTCAATAACTTTTAAAAATAAATTGCTCCTCTAAAT-
1 AAATAAACAAAGCTCTTCTAATCAGAGGCTCAATAAC-TTCAAAAATAAACGGCTCAT-TAAATC
* *
14564880 AAAGGCATC-ACAAC-TTTGAAGAATAGATTGCTTCTCTAATCAGAGGC
64 AAAGGC-TCAACAACTTTTGAAGAATAAATTGCTCCTCTAATCAGAGGC
14564927 ATCACAACTT
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
125 21 0.22
126 44 0.46
127 24 0.25
128 6 0.06
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (125 bp):
AAATAAACAAAGCTCTTCTAATCAGAGGCTCAATAACTTCAAAAATAAACGGCTCATTAAATCAA
AGGCTCAACAACTTTTGAAGAATAAATTGCTCCTCTAATCAGAGGCTCTACGATTTTGAA
Found at i:14565970 original size:15 final size:14
Alignment explanation
Indices: 14565950--14565999 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
14565940 TTGAGTCCTC
14565950 TTTTTTCATTCATTT
1 TTTTTTC-TTCATTT
**
14565965 TTTTTTCTTGTTTT
1 TTTTTTCTTCATTT
14565979 TTTTTTCTTTCCATTT
1 TTTTTTC-TT-CATTT
14565995 TTTTT
1 TTTTT
14566000 ATATTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 12 0.41
15 9 0.31
16 8 0.28
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTTTTCTTCATTT
Found at i:14566007 original size:29 final size:29
Alignment explanation
Indices: 14565950--14566017 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
14565940 TTGAGTCCTC
*
14565950 TTTTTTCATTCATTTTTTTTTCTTGTTTT
1 TTTTTTCATTCATTTTTTTTTCATGTTTT
*
14565979 TTTTTTCTTTCCATTTTTTTTAT-AT-TTTT
1 TTTTTTCATT-CATTTTTTTT-TCATGTTTT
*
14566008 TTATTTCATT
1 TTTTTTCATT
14566018 TTTTCCTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 21 0.64
30 11 0.33
31 1 0.03
ACGTcount: A:0.10, C:0.10, G:0.01, T:0.78
Consensus pattern (29 bp):
TTTTTTCATTCATTTTTTTTTCATGTTTT
Found at i:14570728 original size:6 final size:6
Alignment explanation
Indices: 14570717--14570742 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14570707 CTATCTTATC
14570717 ATCATA ATCATA ATCATA ATCATA AT
1 ATCATA ATCATA ATCATA ATCATA AT
14570743 TCACCCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATCATA
Found at i:14583971 original size:10 final size:10
Alignment explanation
Indices: 14583958--14583982 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14583948 AATTATCTTT
14583958 AATTACTAAA
1 AATTACTAAA
14583968 AATTACTAAA
1 AATTACTAAA
14583978 AATTA
1 AATTA
14583983 ATGATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (10 bp):
AATTACTAAA
Found at i:14586016 original size:7 final size:6
Alignment explanation
Indices: 14585943--14586035 Score: 64
Period size: 6 Copynumber: 15.0 Consensus size: 6
14585933 GGTAAGTTTG
* * * * *
14585943 TATTTT TTTTTCT TATTTT TCTTTT TCTCTT CA-TTT TATTTT TATTTT
1 TATTTT TATTT-T TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* *
14585991 T-TTAATT TATTTT TATTTT GTATTTT ACATTTT TATTAT TATTTT
1 TATT--TT TATTTT TATTTT -TATTTT -TATTTT TATTTT TATTTT
14586036 ATATATGTAT
Statistics
Matches: 68, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
5 5 0.07
6 42 0.62
7 19 0.28
8 2 0.03
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:14586022 original size:20 final size:19
Alignment explanation
Indices: 14585999--14586036 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
14585989 TTTTTAATTT
*
14585999 ATTTTTATTTTGTATTTTAC
1 ATTTTTATTAT-TATTTTAC
14586019 ATTTTTATTATTATTTTA
1 ATTTTTATTATTATTTTA
14586037 TATATGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (19 bp):
ATTTTTATTATTATTTTAC
Found at i:14587127 original size:5 final size:5
Alignment explanation
Indices: 14587117--14587201 Score: 74
Period size: 5 Copynumber: 17.6 Consensus size: 5
14587107 TCTTTTTACC
* *
14587117 TTTAT TTTAT TTT-T TTTAT TTTTT TTTACT TTT-C TTTAT TTTA- TTT-T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
*
14587164 TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14587202 CTTTAAATAA
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
3 3 0.05
4 13 0.20
5 39 0.60
6 6 0.09
7 4 0.06
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:14587132 original size:20 final size:19
Alignment explanation
Indices: 14587117--14587201 Score: 84
Period size: 20 Copynumber: 4.4 Consensus size: 19
14587107 TCTTTTTACC
14587117 TTTATTTTATTTTTTTTAT
1 TTTATTTTATTTTTTTTAT
* *
14587136 TTTTTTTTACTTTTCTTTAT
1 TTTATTTTA-TTTTTTTTAT
*
14587156 TTTATTTT-TTTATTTTCACT
1 TTTATTTTATTT-TTTTTA-T
* *
14587176 TTTATTTT-GTTTTATTAT
1 TTTATTTTATTTTTTTTAT
14587194 TTTATTTT
1 TTTATTTT
14587202 CTTTAAATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
18 12 0.22
19 16 0.29
20 27 0.49
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.80
Consensus pattern (19 bp):
TTTATTTTATTTTTTTTAT
Found at i:14587148 original size:29 final size:29
Alignment explanation
Indices: 14587109--14587206 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
14587099 TTTAGTATTC
14587109 TTTTTACCTTTATTTTATTTTTTTTATTTT
1 TTTTTA-CTTTATTTTATTTTTTTTATTTT
*
14587139 TTTTTACTTT-TCTTTATTTTATTTT-TTTA
1 TTTTTACTTTAT-TTTATTTT-TTTTATTTT
* * *
14587168 TTTTCACTTTTATTTT-GTTTTATTATTTT
1 TTTTTAC-TTTATTTTATTTTTTTTATTTT
*
14587197 ATTTT-CTTTA
1 TTTTTACTTTA
14587207 AATAAAAATC
Statistics
Matches: 56, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
27 4 0.07
28 5 0.09
29 30 0.54
30 16 0.29
31 1 0.02
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (29 bp):
TTTTTACTTTATTTTATTTTTTTTATTTT
Found at i:14587202 original size:30 final size:30
Alignment explanation
Indices: 14587117--14587202 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
14587107 TCTTTTTACC
* *
14587117 TTTATTTTATTTTTTTTATTTT-TTTTTACT
1 TTTATTTTA-TTTTATTATTTTATTTTCACT
* *
14587147 TTT-CTTTATTTTATTTTTTTATTTTCACT
1 TTTATTTTATTTTATTATTTTATTTTCACT
*
14587176 TTTATTTTGTTTTATTATTTTATTTTC
1 TTTATTTTATTTTATTATTTTATTTTC
14587203 TTTAAATAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
28 10 0.21
29 14 0.30
30 23 0.49
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.79
Consensus pattern (30 bp):
TTTATTTTATTTTATTATTTTATTTTCACT
Found at i:14587280 original size:58 final size:58
Alignment explanation
Indices: 14587218--14587615 Score: 489
Period size: 58 Copynumber: 6.7 Consensus size: 58
14587208 ATAAAAATCA
14587218 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
** * * * *
14587276 AAAAAATATTTTTGGAAAAAAGTTGAAAGCATCAATTTTTCTTAAAAAT-AAAATTTC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
* * *
14587333 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTC
1 AAAAAATA--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
* * * *
14587393 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAGTTTTCCTTGAAAATCAAAATTTTC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAGTTTC
* *
14587452 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
1 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
*
14587510 AAAAAAAAAGGGGTTTTTTTGAGGG-AAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT
1 ---AAAAAA----TATTTTTG-GGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT
14587574 CC
58 -C
**
14587576 AAAAAA-ATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
14587616 CTGCACAAGA
Statistics
Matches: 296, Mismatches: 29, Indels: 30
0.83 0.08 0.08
Matches are distributed among these distances:
57 15 0.05
58 120 0.41
59 43 0.15
60 65 0.22
63 6 0.02
64 37 0.12
65 9 0.03
66 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
Found at i:14587354 original size:117 final size:117
Alignment explanation
Indices: 14587215--14587615 Score: 524
Period size: 117 Copynumber: 3.4 Consensus size: 117
14587205 TAAATAAAAA
*
14587215 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAA
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAA
* * * *
14587280 AATATTTTTG-GAAAAAAGTTGAAAGCATCAATTTTTCTTAAAAAT-AAAATT
66 AATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
* *
14587331 TCAAAAAAA-AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCCA
1 TCAAAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAA
*
14587395 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAGTTTTCCTTGAAAATCAAAATTT
64 AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAA-TT
* * *
14587450 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAA
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC---A
* * *
14587514 AAAAAGGGGTTTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTT
63 AAAAA----TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
* *
14587573 TCCAAAAAA-ATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCC
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
14587616 CTGCACAAGA
Statistics
Matches: 252, Mismatches: 20, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
115 1 0.00
116 9 0.04
117 96 0.38
118 43 0.17
119 11 0.04
120 6 0.02
122 32 0.13
123 10 0.04
124 44 0.17
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (117 bp):
TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAA
AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
Done.