Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 72 of 130
Found at i:14866128 original size:41 final size:42
Alignment explanation
Indices: 14866082--14866173 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
14866072 GGTAATTTTT
* * *
14866082 ATAGTAAATAACAT-GTTTTATATTTACTTATATTTCTTTCA
1 ATAGTAAATAACATAGTTTTATATTTACTTACATTACGTTCA
** * *
14866123 ATAGTAAATTGCATATTTTTATATTTATTTACATTACGTTCA
1 ATAGTAAATAACATAGTTTTATATTTACTTACATTACGTTCA
14866165 ATAGTAAAT
1 ATAGTAAAT
14866174 TATGTTATTC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 12 0.28
42 31 0.72
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.49
Consensus pattern (42 bp):
ATAGTAAATAACATAGTTTTATATTTACTTACATTACGTTCA
Found at i:14867139 original size:16 final size:16
Alignment explanation
Indices: 14867120--14867158 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14867110 ATAAAATCTA
*
14867120 AAAAAAAATGAATTTG
1 AAAAAAAATGAATATG
**
14867136 AAAAAATCTGAATATG
1 AAAAAAAATGAATATG
14867152 AAAAAAA
1 AAAAAAA
14867159 TCTAAATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.21
Consensus pattern (16 bp):
AAAAAAAATGAATATG
Found at i:14867171 original size:16 final size:17
Alignment explanation
Indices: 14867136--14867174 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
14867126 AATGAATTTG
* *
14867136 AAAAAATCTGAATATGA
1 AAAAAATCTAAATATCA
14867153 AAAAAATCTAAAT-TCA
1 AAAAAATCTAAATATCA
14867169 AAAAAA
1 AAAAAA
14867175 AAAAAACTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.67, C:0.08, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAAATCTAAATATCA
Found at i:14867228 original size:16 final size:16
Alignment explanation
Indices: 14867194--14867229 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14867184 AAAACCGATG
*
14867194 TAATCTGAATCCATTA
1 TAATCTGAATCCATAA
*
14867210 TAATCTGAATCCGTAA
1 TAATCTGAATCCATAA
14867226 TAAT
1 TAAT
14867230 TCGAATTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (16 bp):
TAATCTGAATCCATAA
Found at i:14868094 original size:14 final size:16
Alignment explanation
Indices: 14868064--14868096 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
14868054 ATAAAGATAA
14868064 ATTTAATATATAATAT
1 ATTTAATATATAATAT
14868080 ATTT-ATATA-AATAT
1 ATTTAATATATAATAT
14868094 ATT
1 ATT
14868097 ATTTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 5 0.29
16 4 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTAATATATAATAT
Found at i:14868300 original size:16 final size:16
Alignment explanation
Indices: 14868270--14868312 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14868260 AGCTCGTATT
*
14868270 TAAAATAATCCGAA-C
1 TAAAATTATCCGAACC
*
14868285 TCAAAATTATCTGAACC
1 T-AAAATTATCCGAACC
14868302 TAAAATTATCC
1 TAAAATTATCC
14868313 AAAATCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 1 0.04
16 20 0.87
17 2 0.09
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (16 bp):
TAAAATTATCCGAACC
Found at i:14876749 original size:20 final size:19
Alignment explanation
Indices: 14876725--14876769 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
14876715 AATTAATCTA
*
14876725 AAATAATAATTTATATTATT
1 AAATAAAAATTTAT-TTATT
*
14876745 TAATAAAAAATTTATTTATT
1 AAAT-AAAAATTTATTTATT
14876765 AAATA
1 AAATA
14876770 GATATAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 11 0.52
21 9 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATAAAAATTTATTTATT
Found at i:14876754 original size:27 final size:24
Alignment explanation
Indices: 14876692--14876755 Score: 58
Period size: 24 Copynumber: 2.5 Consensus size: 24
14876682 ATATATGTTT
*
14876692 TTTAATAAAAATATATTAATTTTAA
1 TTTAATAAAAA-ATAATAATTTTAA
**
14876717 -TTAATCTAAAATAATAATTTATATTA
1 TTTAATAAAAAATAATAATTT-TA--A
14876743 TTTAATAAAAAAT
1 TTTAATAAAAAAT
14876756 TTATTTATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
23 9 0.30
24 10 0.33
26 1 0.03
27 10 0.33
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTAATAAAAAATAATAATTTTAA
Found at i:14878034 original size:15 final size:15
Alignment explanation
Indices: 14878014--14878072 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
14878004 TTACAAATAT
*
14878014 TTTTTTTCTTTTTTC
1 TTTTTTACTTTTTTC
*
14878029 TTTTTTCCTTTTTCTC
1 TTTTTTACTTTTT-TC
* *
14878045 TTCTTTAATTTTTTC
1 TTTTTTACTTTTTTC
* *
14878060 TCTTTTAATTTTT
1 TTTTTTACTTTTT
14878073 CTATCCACTC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
15 25 0.68
16 12 0.32
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTACTTTTTTC
Found at i:14878071 original size:14 final size:14
Alignment explanation
Indices: 14878023--14878074 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
14878013 TTTTTTTTCT
* **
14878023 TTTTTCTTTTTTCC
1 TTTTTCTCTTTTAA
14878037 TTTTTCTCTTCTTTAA
1 TTTTTCTC-T-TTTAA
14878053 TTTTTTCTCTTTTAA
1 -TTTTTCTCTTTTAA
14878068 TTTTTCT
1 TTTTTCT
14878075 ATCCACTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 14 0.44
15 6 0.19
16 4 0.12
17 8 0.25
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTTCTCTTTTAA
Found at i:14878291 original size:30 final size:29
Alignment explanation
Indices: 14878250--14878361 Score: 127
Period size: 30 Copynumber: 3.8 Consensus size: 29
14878240 TATATTTTCA
* *
14878250 TTACATTAAATAAATTTTTAATTTTTACT
1 TTACATTAAATAAATTATTAATTTTTAAT
*
14878279 TTACATTCAAATAAATTATTAAATTTTAAT
1 TTACATT-AAATAAATTATTAATTTTTAAT
* *
14878309 TTATATTAAAATAAATCATTAATTTTTAAT
1 TTACATT-AAATAAATTATTAATTTTTAAT
*
14878339 TCATACA-TAAATAAATTTTTAAT
1 T--TACATTAAATAAATTATTAAT
14878362 ATAAATAAAT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
29 7 0.10
30 59 0.84
31 1 0.01
32 3 0.04
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (29 bp):
TTACATTAAATAAATTATTAATTTTTAAT
Found at i:14878351 original size:60 final size:58
Alignment explanation
Indices: 14878236--14878360 Score: 137
Period size: 60 Copynumber: 2.1 Consensus size: 58
14878226 TCACTTTATT
* * ** *
14878236 TTATTATATTTTCATTACATTAAATAAATTTTTAATTTTTACTTTACATTCAAATAAA
1 TTATTAAATTTTAATTACATTAAATAAATCATTAATTTTTAATTTACATTCAAATAAA
*
14878294 TTATTAAATTTTAATTTATATTAAAATAAATCATTAATTTTTAATTCATACA-T-AAATAAA
1 TTATTAAATTTTAA-TTACATT-AAATAAATCATTAATTTTTAATT--TACATTCAAATAAA
*
14878354 TTTTTAA
1 TTATTAA
14878361 TATAAATAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
58 12 0.21
59 6 0.11
60 33 0.59
61 1 0.02
62 4 0.07
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.50
Consensus pattern (58 bp):
TTATTAAATTTTAATTACATTAAATAAATCATTAATTTTTAATTTACATTCAAATAAA
Found at i:14878684 original size:29 final size:30
Alignment explanation
Indices: 14878614--14878698 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 30
14878604 AGGTACATTT
* *
14878614 TAAAAATTTAAAGAGTTATTTAAATATAAA
1 TAAAAATTTAAAAAATTATTTAAATATAAA
* * *
14878644 TATAAATTTAAAAATTTATTTAAATA-CAA
1 TAAAAATTTAAAAAATTATTTAAATATAAA
* *
14878673 TAAAAATATAAAAAATTATCTAAATA
1 TAAAAATTTAAAAAATTATTTAAATA
14878699 AAGTTATAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 24 0.51
30 23 0.49
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (30 bp):
TAAAAATTTAAAAAATTATTTAAATATAAA
Found at i:14883723 original size:16 final size:15
Alignment explanation
Indices: 14883687--14883733 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
14883677 ATAAAAACTC
*
14883687 AATAATGAAATTTTT
1 AATAATGAAAATTTT
14883702 AATAATGAATAATTTT
1 AATAATGAA-AATTTT
* *
14883718 ATTAAT-AAAAGTTT
1 AATAATGAAAATTTT
14883732 AA
1 AA
14883734 ATTGTTGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 6 0.22
15 11 0.41
16 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (15 bp):
AATAATGAAAATTTT
Found at i:14884420 original size:3 final size:3
Alignment explanation
Indices: 14884412--14884445 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
14884402 CTCTTCGCTT
*
14884412 TTC TTC TTC TTC TTC TTC TCTC TTG TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC
14884446 AATGGGGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:14892791 original size:15 final size:15
Alignment explanation
Indices: 14892771--14892810 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
14892761 AAAGTTATTT
14892771 AATATTTTAAGTTTA
1 AATATTTTAAGTTTA
* * *
14892786 AATATTTTTATTTTG
1 AATATTTTAAGTTTA
14892801 AATATTTTAA
1 AATATTTTAA
14892811 AGTATTAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
AATATTTTAAGTTTA
Found at i:14895650 original size:15 final size:15
Alignment explanation
Indices: 14895630--14895677 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
14895620 TAAATCTCAT
14895630 AAAATAATATATTTA
1 AAAATAATATATTTA
*
14895645 AAAATAATA-ATATA
1 AAAATAATATATTTA
*
14895659 AAAATGAAT-TAATTA
1 AAAAT-AATATATTTA
14895674 AAAA
1 AAAA
14895678 AGATAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (15 bp):
AAAATAATATATTTA
Found at i:14903226 original size:2 final size:2
Alignment explanation
Indices: 14903219--14903245 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14903209 AAATCATGCT
14903219 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
14903246 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14904485 original size:27 final size:27
Alignment explanation
Indices: 14904447--14904506 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
14904437 TTGTCAAGAT
*
14904447 TCTTCATAGAACCTTTAAACTATCACA
1 TCTTCATAGAACCTTTAAACTAGCACA
14904474 TCTTCATAGAACCTTTAAACTAGCACA
1 TCTTCATAGAACCTTTAAACTAGCACA
14904501 TCTTCA
1 TCTTCA
14904507 AGTTTAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (27 bp):
TCTTCATAGAACCTTTAAACTAGCACA
Found at i:14916601 original size:63 final size:63
Alignment explanation
Indices: 14916499--14916624 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
14916489 TGAGAAACAT
* *
14916499 CCTCCTACCTGCAAATGGCAAAGAGAGTAGGAAAGAGTAAATGCTTAATTATCAGTGTCTAAA
1 CCTCCTACCTGCAAACGGCAAAGAGAGTAGGAAAAAGTAAATGCTTAATTATCAGTGTCTAAA
* *
14916562 CCTCCTACTTGCAAACGGCAAAGAGATTAGGAAAAAGTAAATGCTTAATTATCAGTGTCTAAA
1 CCTCCTACCTGCAAACGGCAAAGAGAGTAGGAAAAAGTAAATGCTTAATTATCAGTGTCTAAA
14916625 TGATGACCGC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (63 bp):
CCTCCTACCTGCAAACGGCAAAGAGAGTAGGAAAAAGTAAATGCTTAATTATCAGTGTCTAAA
Found at i:14939375 original size:18 final size:18
Alignment explanation
Indices: 14939352--14939388 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
14939342 TTTTTTAGAA
14939352 AGAGTTTTACTTATACTT
1 AGAGTTTTACTTATACTT
*
14939370 AGAGTTTTATTTATACTT
1 AGAGTTTTACTTATACTT
14939388 A
1 A
14939389 AGATCTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (18 bp):
AGAGTTTTACTTATACTT
Found at i:14947272 original size:12 final size:12
Alignment explanation
Indices: 14947205--14947272 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
14947195 ATTAAAATAG
14947205 ATAATATATTTA-
1 ATAAT-TATTTAT
* *
14947217 ATGATAATTTAT
1 ATAATTATTTAT
14947229 -TCAATTATTTAT
1 AT-AATTATTTAT
14947241 -TAACTTATTTAT
1 ATAA-TTATTTAT
* *
14947253 GTATTTATTTAT
1 ATAATTATTTAT
14947265 ATAATTAT
1 ATAATTAT
14947273 ATATTTTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
11 8 0.18
12 35 0.78
13 2 0.04
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (12 bp):
ATAATTATTTAT
Found at i:14950698 original size:21 final size:21
Alignment explanation
Indices: 14950673--14950712 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14950663 TAATATTAAA
14950673 TTAAAATTAAAAATATATATT
1 TTAAAATTAAAAATATATATT
* *
14950694 TTAAAATTTAAAATTTATA
1 TTAAAATTAAAAATATATA
14950713 AATCATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAAAATTAAAAATATATATT
Found at i:14953262 original size:11 final size:12
Alignment explanation
Indices: 14953246--14953274 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
14953236 TGTCAAAGTA
14953246 TTTTATTTT-TC
1 TTTTATTTTCTC
14953257 TTTTATTTTCTC
1 TTTTATTTTCTC
14953269 TTTTAT
1 TTTTAT
14953275 GATTCCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTATTTTCTC
Found at i:14961756 original size:27 final size:27
Alignment explanation
Indices: 14961733--14961784 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
14961723 CTCTCATTTT
*
14961733 GAACCAGTTTATTTATATTATCATAGA
1 GAACCAGTTTATTTATACTATCATAGA
*
14961760 GAATCAGTTTATTTATACTATCATA
1 GAACCAGTTTATTTATACTATCATA
14961785 TAGGTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (27 bp):
GAACCAGTTTATTTATACTATCATAGA
Found at i:14967772 original size:19 final size:20
Alignment explanation
Indices: 14967748--14967786 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14967738 ATGGTCGTCA
*
14967748 AAAATT-AAATTTTATTATT
1 AAAATTAAAATTTTAATATT
14967767 AAAATTAAAATTTTAATATT
1 AAAATTAAAATTTTAATATT
14967787 TTATTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AAAATTAAAATTTTAATATT
Found at i:14968242 original size:21 final size:19
Alignment explanation
Indices: 14968200--14968254 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
14968190 TGTGAAATAT
* *
14968200 ATTTTATATTTTTATT-AA
1 ATTTTAAATTATTATTAAA
14968218 ATTTATATAATTATTATTAAA
1 ATTT-TA-AATTATTATTAAA
14968239 ATTTTAAATTA-TATTA
1 ATTTTAAATTATTATTA
14968255 TTTTTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 9 0.28
19 7 0.22
20 10 0.31
21 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTTAAATTATTATTAAA
Found at i:14976682 original size:26 final size:26
Alignment explanation
Indices: 14976653--14976706 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14976643 AAGAACTTGC
14976653 TTTGATTAGCATTTGCTTAAAAGCAA
1 TTTGATTAGCATTTGCTTAAAAGCAA
* *
14976679 TTTGATTAGCATTTGGTTAAAATCAA
1 TTTGATTAGCATTTGCTTAAAAGCAA
14976705 TT
1 TT
14976707 AGTTTAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (26 bp):
TTTGATTAGCATTTGCTTAAAAGCAA
Found at i:14976713 original size:26 final size:26
Alignment explanation
Indices: 14976656--14976713 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
14976646 AACTTGCTTT
*
14976656 GATTAGCATTTGCTTAAAAGCAATTT
1 GATTAGCATTTGCTTAAAAGCAATTA
* *
14976682 GATTAGCATTTGGTTAAAATCAATTA
1 GATTAGCATTTGCTTAAAAGCAATTA
*
14976708 GTTTAG
1 GATTAG
14976714 ATTCTAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (26 bp):
GATTAGCATTTGCTTAAAAGCAATTA
Found at i:14977347 original size:20 final size:20
Alignment explanation
Indices: 14977324--14977361 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14977314 ATAAATTCAA
*
14977324 ATATAAAAAAATATATAATT
1 ATATAAAAAAATACATAATT
*
14977344 ATATAAATAAATACATAA
1 ATATAAAAAAATACATAA
14977362 ATAAGTCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATAAAAAAATACATAATT
Found at i:14980980 original size:43 final size:43
Alignment explanation
Indices: 14980933--14981016 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
14980923 TGTTATATGA
**
14980933 TAATTTTAATATTTTATATGTATTTGTTATAAATTAATTATAG
1 TAATTTTAATATTTTATATGTATTTGACATAAATTAATTATAG
*
14980976 TAATTTTAATGTTTTATATGTATTTGACATAAATTAATTAT
1 TAATTTTAATATTTTATATGTATTTGACATAAATTAATTAT
14981017 GATATAGAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.37, C:0.01, G:0.07, T:0.55
Consensus pattern (43 bp):
TAATTTTAATATTTTATATGTATTTGACATAAATTAATTATAG
Found at i:14987185 original size:31 final size:31
Alignment explanation
Indices: 14987147--14987232 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
14987137 ACCCCTTTCG
14987147 AAACCCCTAAAATCCAAAATCCCTTAAATCC
1 AAACCCCTAAAATCCAAAATCCCTTAAATCC
*
14987178 AAACCCCTAAAATCCGAAATCCCTTAAATCC
1 AAACCCCTAAAATCCAAAATCCCTTAAATCC
*
14987209 AAACTCCTTAAAATCCAAAA-CCCT
1 AAAC-CCCTAAAATCCAAAATCCCT
14987233 AAAACCTTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
31 38 0.75
32 13 0.25
ACGTcount: A:0.44, C:0.35, G:0.01, T:0.20
Consensus pattern (31 bp):
AAACCCCTAAAATCCAAAATCCCTTAAATCC
Found at i:14987211 original size:47 final size:44
Alignment explanation
Indices: 14987145--14987344 Score: 188
Period size: 47 Copynumber: 4.3 Consensus size: 44
14987135 AAACCCCTTT
* * *
14987145 CGAAACCCCTAAAATCCAAAATCCCTTAAATCCAAACCCCTAAAATC
1 CGAAA-CCCTTAAATCC-AAAT-CCTAAAATCCAAAACCCTAAAATC
14987192 CGAAATCCCTTAAATCCAAACTCCTTAAAATCCAAAACCCTAAAA-C
1 CGAAA-CCCTTAAATCCAAA-TCC-TAAAATCCAAAACCCTAAAATC
* *
14987238 CTTTAAACCCTTAAATCCAAACCTCATAAAATCCAAAACCCTAAAATC
1 C--GAAACCCTTAAATCCAAA--TCCTAAAATCCAAAACCCTAAAATC
* * * *
14987286 C-CAACCTTTAAATCCAGATCCTAAAATTCAAAACCTCTAAAATC
1 CGAAACCCTTAAATCCAAATCCTAAAATCCAAAACC-CTAAAATC
* *
14987330 TGAAACCCTAAAATC
1 CGAAACCCTTAAATC
14987345 TGAATCTTCA
Statistics
Matches: 130, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
43 15 0.12
44 8 0.06
45 24 0.18
46 7 0.05
47 68 0.52
48 8 0.06
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (44 bp):
CGAAACCCTTAAATCCAAATCCTAAAATCCAAAACCCTAAAATC
Found at i:14987343 original size:31 final size:30
Alignment explanation
Indices: 14987217--14987371 Score: 93
Period size: 31 Copynumber: 5.1 Consensus size: 30
14987207 CCAAACTCCT
* *
14987217 TAAAATCCAAAACC-CTAAAACCTTTAAACCC
1 TAAAAT-CAAAACCTCTAAAATC-TGAAACCC
* * **
14987248 TTAAATCCAAACCTCATAAAATCCAAAACCC
1 TAAAATCAAAACCTC-TAAAATCTGAAACCC
** * * * *
14987279 TAAAATCCCAACCT-TTAAATC-CAGATCC
1 TAAAATCAAAACCTCTAAAATCTGAAACCC
14987307 TAAAATTCAAAACCTCTAAAATCTGAAACCC
1 TAAAA-TCAAAACCTCTAAAATCTGAAACCC
** *
14987338 TAAAATCTGAATCT-TCAAAATCTTGAAACCC
1 TAAAATCAAAACCTCT-AAAATC-TGAAACCC
14987369 TAA
1 TAA
14987372 CCTTGAAAAC
Statistics
Matches: 97, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
28 9 0.09
29 14 0.14
30 24 0.25
31 44 0.45
32 6 0.06
ACGTcount: A:0.46, C:0.28, G:0.03, T:0.23
Consensus pattern (30 bp):
TAAAATCAAAACCTCTAAAATCTGAAACCC
Found at i:14987348 original size:15 final size:14
Alignment explanation
Indices: 14987151--14987344 Score: 138
Period size: 16 Copynumber: 12.7 Consensus size: 14
14987141 CTTTCGAAAC
14987151 CCCTAAAATCCAAAA
1 CCCTAAAATCC-AAA
*
14987166 TCCCTTAAATCCAAA
1 -CCCTAAAATCCAAA
14987181 CCCCTAAAATCCGAAA
1 -CCCTAAAATCC-AAA
*
14987197 TCCCTTAAATCCAAA
1 -CCCTAAAATCCAAA
14987212 CTCCTTAAAATCCAAAA
1 C-CC-TAAAATCC-AAA
14987229 CCCTAAAA-CCTTTAAA
1 CCCTAAAATCC---AAA
*
14987245 CCCTTAAATCCAAA
1 CCCTAAAATCCAAA
14987259 CCTCATAAAATCCAAAA
1 CC-C-TAAAATCC-AAA
*
14987276 CCCTAAAATCCCAA
1 CCCTAAAATCCAAA
* * *
14987290 CCTTTAAATCCAGA
1 CCCTAAAATCCAAA
* *
14987304 TCCTAAAATTCAAAA
1 CCCTAAAA-TCCAAA
*
14987319 CCTCTAAAATCTGAAA
1 CC-CTAAAATC-CAAA
14987335 CCCTAAAATC
1 CCCTAAAATC
14987345 TGAATCTTCA
Statistics
Matches: 144, Mismatches: 21, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
14 25 0.17
15 47 0.33
16 61 0.42
17 11 0.08
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.22
Consensus pattern (14 bp):
CCCTAAAATCCAAA
Found at i:14993892 original size:9 final size:9
Alignment explanation
Indices: 14993878--14993921 Score: 70
Period size: 9 Copynumber: 4.8 Consensus size: 9
14993868 ATGGGGCATC
14993878 AAAAAATAA
1 AAAAAATAA
14993887 AAAAAATAA
1 AAAAAATAA
14993896 AAAAAAGTAA
1 AAAAAA-TAA
*
14993906 AAAAAAGAA
1 AAAAAATAA
14993915 AAAAAAT
1 AAAAAAT
14993922 GGACATATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 23 0.72
10 9 0.28
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.09
Consensus pattern (9 bp):
AAAAAATAA
Found at i:14993898 original size:10 final size:10
Alignment explanation
Indices: 14993878--14993920 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
14993868 ATGGGGCATC
14993878 AAAAAAT-AA
1 AAAAAATAAA
14993887 AAAAAATAAA
1 AAAAAATAAA
*
14993897 AAAAAGTAAA
1 AAAAAATAAA
14993907 AAAAAGA-AAA
1 AAAAA-ATAAA
14993917 AAAA
1 AAAA
14993921 TGGACATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
9 7 0.23
10 23 0.77
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:14993900 original size:19 final size:19
Alignment explanation
Indices: 14993878--14993920 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
14993868 ATGGGGCATC
*
14993878 AAAAAATAAAAAAAATAAA
1 AAAAAATAAAAAAAAGAAA
*
14993897 AAAAAGTAAAAAAAAGAAA
1 AAAAAATAAAAAAAAGAAA
14993916 AAAAA
1 AAAAA
14993921 TGGACATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (19 bp):
AAAAAATAAAAAAAAGAAA
Found at i:14995603 original size:26 final size:27
Alignment explanation
Indices: 14995552--14995603 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
14995542 AAAAGTCAAA
14995552 TGTATTTCCATCAAGCATTCACATTCT
1 TGTATTTCCATCAAGCATTCACATTCT
* * *
14995579 TGTATTTGCATCGA-CATTTACATTC
1 TGTATTTCCATCAAGCATTCACATTC
14995604 GCATTGACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (27 bp):
TGTATTTCCATCAAGCATTCACATTCT
Found at i:14995612 original size:18 final size:18
Alignment explanation
Indices: 14995586--14995626 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14995576 TCTTGTATTT
*
14995586 GCATCGACATTTACATTC
1 GCATCGACATTTACATTA
* *
14995604 GCATTGACATTTCCATTA
1 GCATCGACATTTACATTA
14995622 GCATC
1 GCATC
14995627 ATTTGATGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (18 bp):
GCATCGACATTTACATTA
Found at i:14995781 original size:41 final size:41
Alignment explanation
Indices: 14995723--14995822 Score: 141
Period size: 41 Copynumber: 2.4 Consensus size: 41
14995713 GTTTTAAACT
* *
14995723 CTCTGTTTAAGAAGAACCATTTTCAGTCAAGATTTC-AAAG
1 CTCTGTTTAAGAGGAACCATTTTCAATCAAGATTTCAAAAG
*
14995763 CCTCTGTTTAAGAGGAACCATTTTTAATCAAGATTTCAAAAG
1 -CTCTGTTTAAGAGGAACCATTTTCAATCAAGATTTCAAAAG
14995805 CTCTGTTT-AGAAGGAACC
1 CTCTGTTTAAG-AGGAACC
14995823 TCCTTCAGAT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
40 2 0.04
41 48 0.89
42 4 0.07
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (41 bp):
CTCTGTTTAAGAGGAACCATTTTCAATCAAGATTTCAAAAG
Found at i:14996280 original size:88 final size:88
Alignment explanation
Indices: 14996081--14996270 Score: 236
Period size: 88 Copynumber: 2.2 Consensus size: 88
14996071 TTTTGAGATT
* * ** ** * * *
14996081 TGTAAGACCTCTGGGCATAATTTTGATTCGCGATGTTATCTCGATCAATTCTTTATCTTTTGACT
1 TGTAAGACCTCCGGACATAATTTCAATTAACGGTGTTATCCCAATCAATTCTTTATCTTTTGACT
14996146 TGCGGTATTATCCCAGTCAATTC
66 TGCGGTATTATCCCAGTCAATTC
* *
14996169 TGTAAGACCTCCGGACATAATTTCAATTAACGGTGTTATCCCAATCGATTTTTTATCTTTTGACT
1 TGTAAGACCTCCGGACATAATTTCAATTAACGGTGTTATCCCAATCAATTCTTTATCTTTTGACT
* * ** *
14996234 TGTGGTGTTATCTTAGTCGATTC
66 TGCGGTATTATCCCAGTCAATTC
14996257 TGTAAGACCTCCGG
1 TGTAAGACCTCCGG
14996271 GTATGATTTC
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (88 bp):
TGTAAGACCTCCGGACATAATTTCAATTAACGGTGTTATCCCAATCAATTCTTTATCTTTTGACT
TGCGGTATTATCCCAGTCAATTC
Found at i:14996588 original size:198 final size:194
Alignment explanation
Indices: 14996077--14996682 Score: 714
Period size: 198 Copynumber: 3.1 Consensus size: 194
14996067 AAGATTTTGA
* * *
14996077 GATTTGTAAGACCTCTGGGCATAATTTTGATTCGCGATGTTATCTCGATCAATTCTTTATCTTTT
1 GATTTTTAAGACCTCT-GGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTAT-TTTT
* * * * **
14996142 GACTTGCGGTATTATCCCAGTCAATTCTGTAAGACCTCCGGACATAATTTCAATTAACGGTGTTA
64 GACTTACGGTGTTATCCCAGTCAATTTTCTAAGACCTCCGG-CATAATTTTGATTAACGGTGTTA
* *
14996207 TCCCAATCGATTTTTTATCTTTTGACTTGTGGTGTTATCTTAGTCGATTCTGTAAGACCTCCGGG
128 TCCCAATCGA-TTTTTATCTTTTAACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGGG
*
14996272 TAT
192 CAT
* * ** *
14996275 GATTTCTAAGACCTCTTGGCATAATTTTGATTCGCGATGTTGTCCTAATCGATTTTTTATTTTTG
1 GATTTTTAAGACCTC-TGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTG
* * * * * *
14996340 ATTTATGGTGTTGTTCCAGT-AGATTTTCTAAGACCTCCGGGCATAATTTTGATTTATGGTGTTA
65 ACTTACGGTGTTATCCCAGTCA-ATTTTCTAAGACCTCC-GGCATAATTTTGATTAACGGTGTTA
* * * *
14996404 TCCCGATCGACTTTTTATCTTTCAACTTGTGGTGTTATCCTAATCGATTCTGTAAGACCTTCCAG
128 TCCCAATCGA-TTTTTATCTTTTAACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACC-TCCGG
14996469 GCAT
191 GCAT
* * * *
14996473 AATTTTTAAGACCTCTGAGTATAATTTCGATTCGTGATGTTATCCCGATCGATTCTTTATTTTTG
1 GATTTTTAAGACCTCTG-GCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTG
* * ** *
14996538 ACTTACGGTGTTATCCCAGTCAATTTTTTAAGACCTTCGAGCATAATTTTGATTCGCGATGTTAT
65 ACTTACGGTGTTATCCCAGTCAATTTTCTAAGACCTCCG-GCATAATTTTGATTAACGGTGTTAT
* * *
14996603 CCAAATCGATTCTTGAGT-TTTTAACTT-CGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGGG
129 CCCAATCGATT-TTTA-TCTTTTAACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGGG
14996666 CAT
192 CAT
*
14996669 GATTCTTAAGACCT
1 GATTTTTAAGACCT
14996683 TCGTGCATGA
Statistics
Matches: 344, Mismatches: 55, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
196 21 0.06
197 138 0.40
198 182 0.53
199 3 0.01
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (194 bp):
GATTTTTAAGACCTCTGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGA
CTTACGGTGTTATCCCAGTCAATTTTCTAAGACCTCCGGCATAATTTTGATTAACGGTGTTATCC
CAATCGATTTTTATCTTTTAACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGGGCAT
Found at i:14996634 original size:87 final size:88
Alignment explanation
Indices: 14996475--14996660 Score: 243
Period size: 87 Copynumber: 2.1 Consensus size: 88
14996465 CCAGGCATAA
* * ** * *
14996475 TTTTTAAGACC-TCTGAGTATAATTTCGATTCGTGATGTTATCCCGATCGATTCTTTATTTTTGA
1 TTTTTAAGACCTTCTGAGCATAATTTCGATTCGCGATGTTATCCAAATCGATTCTTGATTTTTAA
14996539 CTTACGGTGTTATCCCAGTCAAT
66 CTTACGGTGTTATCCCAGTCAAT
*
14996562 TTTTTAAGACCTTC-GAGCATAATTTTGATTCGCGATGTTATCCAAATCGATTCTTGAGTTTTTA
1 TTTTTAAGACCTTCTGAGCATAATTTCGATTCGCGATGTTATCCAAATCGATTCTTGA-TTTTTA
* *
14996626 ACTT-CGGTGTTATCCTAGTCGAT
65 ACTTACGGTGTTATCCCAGTCAAT
* *
14996649 TCTGTAAGACCT
1 TTTTTAAGACCT
14996661 CCGGGCATGA
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
87 75 0.87
88 11 0.13
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (88 bp):
TTTTTAAGACCTTCTGAGCATAATTTCGATTCGCGATGTTATCCAAATCGATTCTTGATTTTTAA
CTTACGGTGTTATCCCAGTCAAT
Found at i:14996680 original size:22 final size:23
Alignment explanation
Indices: 14996646--14996695 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
14996636 TATCCTAGTC
14996646 GATTCTGTAAGACCTCCGGGCAT
1 GATTCTGTAAGACCTCCGGGCAT
* *
14996669 GATTCT-TAAGACCTTCGTGCAT
1 GATTCTGTAAGACCTCCGGGCAT
14996691 GATTC
1 GATTC
14996696 CTAATATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (23 bp):
GATTCTGTAAGACCTCCGGGCAT
Found at i:14996712 original size:22 final size:22
Alignment explanation
Indices: 14996653--14996712 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
14996643 GTCGATTCTG
*
14996653 TAAGACC-TCCGGGCATGATTCT
1 TAAGACCAT-CGGGCATGATTCC
* *
14996675 TAAGACCTTCGTGCATGATTCC
1 TAAGACCATCGGGCATGATTCC
* *
14996697 TAATATCATCGGGCAT
1 TAAGACCATCGGGCAT
14996713 AATTTAGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 30 0.97
23 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (22 bp):
TAAGACCATCGGGCATGATTCC
Found at i:14996842 original size:22 final size:22
Alignment explanation
Indices: 14996785--14996850 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
14996775 ATCGATTCTC
* *
14996785 TAAGACCTCCAGGCATGATTTT
1 TAAGACCTCCGGGTATGATTTT
14996807 TAAGACCTCCGGGTATGATTTT
1 TAAGACCTCCGGGTATGATTTT
* *
14996829 TAAGACCTCTGGGTATAATTTT
1 TAAGACCTCCGGGTATGATTTT
14996851 GATTCGTGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (22 bp):
TAAGACCTCCGGGTATGATTTT
Found at i:14996932 original size:132 final size:131
Alignment explanation
Indices: 14996562--14996932 Score: 408
Period size: 132 Copynumber: 2.8 Consensus size: 131
14996552 CCCAGTCAAT
* * * *
14996562 TTTTTAAGACCT-TCGAGCATAATTTTGATTCGCGATGTTATCCAAATCGATTCTTGAGTTTTTA
1 TTTTTAAGACCTCT-GGGCATAATTTTGATTCGCGGTGTTATCC-GATCGATTCTTTAGTTTTTA
* * * *
14996626 ACTT-CGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGGGCATGATTCTTAAGACCTTCGTGCA
64 ACTTGCGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTTAAGACCTCCGGGCA
14996690 TGA
129 TGA
** * * * ** * *
14996693 TTCCTAATATCATC-GGGCATAATTTAGATTTACGGTGTTGTCCCGATCGATTTTTTAGTTTTTA
1 TTTTTAAGA-CCTCTGGGCATAATTTTGATTCGCGGTGTTAT-CCGATCGATTCTTTAGTTTTTA
* * * * *
14996757 ACTTGC-AGTGTTATCCCAATCGATTCTCTAAGACCTCCAGGCATGATTTTTAAGACCTCCGGGT
64 ACTTGCGA-TGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTTAAGACCTCCGGGC
14996821 ATGA
128 ATGA
* * * *
14996825 TTTTTAAGACCTCTGGGTATAATTTTGATTCGTGGTGTTATCTCGATCGATTCTTTATTTTTTGA
1 TTTTTAAGACCTCTGGGCATAATTTTGATTCGCGGTGTTATC-CGATCGATTCTTTAGTTTTTAA
* *
14996890 CTTGCGATGTTGTCCCAGTCGATTCTGTAAGACCTTCGGGCAT
65 CTTGCGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCAT
14996933 AAATTCGATT
Statistics
Matches: 192, Mismatches: 40, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
131 52 0.27
132 139 0.72
133 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (131 bp):
TTTTTAAGACCTCTGGGCATAATTTTGATTCGCGGTGTTATCCGATCGATTCTTTAGTTTTTAAC
TTGCGATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTTAAGACCTCCGGGCATG
A
Found at i:14997510 original size:13 final size:14
Alignment explanation
Indices: 14997480--14997511 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14997470 ACCCATACAC
14997480 AAATAGAAACACAA
1 AAATAGAAACACAA
14997494 AAATAGAAACA-AA
1 AAATAGAAACACAA
14997507 AAATA
1 AAATA
14997512 AATACAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.75, C:0.09, G:0.06, T:0.09
Consensus pattern (14 bp):
AAATAGAAACACAA
Found at i:14998597 original size:15 final size:15
Alignment explanation
Indices: 14998568--14998764 Score: 134
Period size: 16 Copynumber: 12.8 Consensus size: 15
14998558 CACTAATTCT
14998568 TAAAATCCGAAACCCC
1 TAAAATCC-AAACCCC
14998584 TAAAATCCAAACCCC
1 TAAAATCCAAACCCC
*
14998599 TAAAATCCGAAATCCC
1 TAAAATCC-AAACCCC
*
14998615 TTAAATCCAAACCCC
1 TAAAATCCAAACCCC
*
14998630 TTAAAATCTGAAA-CCC
1 -TAAAATC-CAAACCCC
* *
14998646 TAGAA-CCTTTGAA-CCC
1 TAAAATCC---AAACCCC
*
14998662 TTAAATCCAAACCCC
1 TAAAATCCAAACCCC
**
14998677 ATAAAATCCAAAATCC
1 -TAAAATCCAAACCCC
* *
14998693 TAAAATCCCAA-CCT
1 TAAAATCCAAACCCC
* *
14998707 TTAAATCCAGACCCC
1 TAAAATCCAAACCCC
*
14998722 -AAAATTCAAAGCCCC
1 TAAAATCCAAA-CCCC
*
14998737 TAAAATCCAAAACCC
1 TAAAATCCAAACCCC
*
14998752 TTAAATCCGAAAC
1 TAAAATCC-AAAC
14998765 TTCAAAATCT
Statistics
Matches: 140, Mismatches: 28, Indels: 26
0.72 0.14 0.13
Matches are distributed among these distances:
14 19 0.14
15 54 0.39
16 62 0.44
17 5 0.04
ACGTcount: A:0.44, C:0.34, G:0.04, T:0.19
Consensus pattern (15 bp):
TAAAATCCAAACCCC
Found at i:14998604 original size:31 final size:31
Alignment explanation
Indices: 14998568--14998764 Score: 149
Period size: 31 Copynumber: 6.4 Consensus size: 31
14998558 CACTAATTCT
14998568 TAAAATCCGAAACCCCTAAAATCCAAACCCC
1 TAAAATCCGAAACCCCTAAAATCCAAACCCC
* *
14998599 TAAAATCCGAAATCCCTTAAATCCAAACCCC
1 TAAAATCCGAAACCCCTAAAATCCAAACCCC
* * *
14998630 TTAAAATCTGAAA-CCCTAGAA-CCTTTGAA-CCC
1 -TAAAATCCGAAACCCCTAAAATCC---AAACCCC
* **
14998662 TTAAATCC-AAACCCCATAAAATCCAAAATCC
1 TAAAATCCGAAACCCC-TAAAATCCAAACCCC
* * * *
14998693 TAAAATCC-CAA-CCTTTAAATCCAGACCCC
1 TAAAATCCGAAACCCCTAAAATCCAAACCCC
* *
14998722 -AAAATTC-AAAGCCCCTAAAATCCAAAACCC
1 TAAAATCCGAAA-CCCCTAAAATCCAAACCCC
*
14998752 TTAAATCCGAAAC
1 TAAAATCCGAAAC
14998765 TTCAAAATCT
Statistics
Matches: 128, Mismatches: 26, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
28 8 0.06
29 11 0.09
30 23 0.18
31 61 0.48
32 21 0.16
33 4 0.03
ACGTcount: A:0.44, C:0.34, G:0.04, T:0.19
Consensus pattern (31 bp):
TAAAATCCGAAACCCCTAAAATCCAAACCCC
Found at i:15002656 original size:32 final size:29
Alignment explanation
Indices: 15002604--15002663 Score: 68
Period size: 31 Copynumber: 2.0 Consensus size: 29
15002594 GATTGGTACT
*
15002604 ATAATTATTTCTACCTAATGCCAAATGCAAG
1 ATAATTATTTCGACCTAATG-CAAA-GCAAG
15002635 ATAATTCATTTCGA-CTAAATGCAAAGCAA
1 ATAATT-ATTTCGACCT-AATGCAAAGCAA
15002664 ATATTTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
30 4 0.15
31 12 0.46
32 10 0.38
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (29 bp):
ATAATTATTTCGACCTAATGCAAAGCAAG
Found at i:15003308 original size:28 final size:28
Alignment explanation
Indices: 15003274--15003351 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 28
15003264 AAGAAAATTT
15003274 TTTAAAAAATATAAAATTTCTTAAAA-CA
1 TTTAAAAAATATAAAATTT-TTAAAATCA
* *
15003302 TTTAAAAAATATGAAATACTTTTAAAATTA
1 TTTAAAAAATAT-AAA-ATTTTTAAAATCA
*
15003332 TTTAAAAAATAAAAAATTTT
1 TTTAAAAAATATAAAATTTT
15003352 AAATACTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
28 16 0.37
29 12 0.28
30 15 0.35
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (28 bp):
TTTAAAAAATATAAAATTTTTAAAATCA
Found at i:15003337 original size:30 final size:29
Alignment explanation
Indices: 15003267--15003354 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
15003257 GCATTAAAAG
* *
15003267 AAAATTTTTTAAAAAATATAAAATTTCTT
1 AAAATTATTTAAAAAATATAAAACTTCTT
*
15003296 AAAA-CATTTAAAAAATATGAAATACTT-TT
1 AAAATTATTTAAAAAATAT-AAA-ACTTCTT
*
15003325 AAAATTATTTAAAAAATA-AAAAATT-TT
1 AAAATTATTTAAAAAATATAAAACTTCTT
15003352 AAA
1 AAA
15003355 TACTTAAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
27 8 0.16
28 15 0.29
29 13 0.25
30 15 0.29
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (29 bp):
AAAATTATTTAAAAAATATAAAACTTCTT
Found at i:15003364 original size:26 final size:26
Alignment explanation
Indices: 15003335--15003390 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15003325 AAAATTATTT
*
15003335 AAAAAATAAAAAATT-TTAAATACTTA
1 AAAAAATAAAAAATTATGAAA-ACTTA
*
15003361 AAAAAATTAAAAATTATGAAAACTTA
1 AAAAAATAAAAAATTATGAAAACTTA
15003387 AAAA
1 AAAA
15003391 TTCAAAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.27
Consensus pattern (26 bp):
AAAAAATAAAAAATTATGAAAACTTA
Found at i:15003399 original size:17 final size:16
Alignment explanation
Indices: 15003333--15003400 Score: 55
Period size: 17 Copynumber: 4.0 Consensus size: 16
15003323 TTAAAATTAT
* *
15003333 TTAAAAAATAAAAAATT
1 TTAAAAATTAAAAAA-C
* *
15003350 TTAAATACTTAAAAAAA
1 TTAAA-AATTAAAAAAC
*
15003367 TTAAAAATTATGAAAAC
1 TTAAAAATTA-AAAAAC
15003384 TTAAAAATTCAAAAAAC
1 TTAAAAATT-AAAAAAC
15003401 CTCAAAATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
16 4 0.10
17 28 0.68
18 9 0.22
ACGTcount: A:0.65, C:0.06, G:0.01, T:0.28
Consensus pattern (16 bp):
TTAAAAATTAAAAAAC
Found at i:15003583 original size:13 final size:12
Alignment explanation
Indices: 15003560--15003598 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
15003550 TCTACAAATT
15003560 TAAAAAATTTTG
1 TAAAAAATTTTG
*
15003572 TAAAAAACTTT-
1 TAAAAAATTTTG
*
15003583 TAAAAAATTATG
1 TAAAAAATTTTG
15003595 TAAA
1 TAAA
15003599 TTTTTCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (12 bp):
TAAAAAATTTTG
Found at i:15003765 original size:40 final size:40
Alignment explanation
Indices: 15003721--15003802 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 40
15003711 AAATTTTTCT
15003721 TTAATTTTTATAATTTTTAAGAATTTTTTAAA-TTAAAAAA
1 TTAATTTTTA-AATTTTTAAGAATTTTTTAAATTTAAAAAA
* **
15003761 TTAATTTTTAATTTTTTAAGTTTTTTTTAAATTTAAAAAA
1 TTAATTTTTAAATTTTTAAGAATTTTTTAAATTTAAAAAA
15003801 TT
1 TT
15003803 TTTATTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 18 0.47
40 20 0.53
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (40 bp):
TTAATTTTTAAATTTTTAAGAATTTTTTAAATTTAAAAAA
Found at i:15003804 original size:20 final size:20
Alignment explanation
Indices: 15003744--15003805 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
15003734 TTTTTAAGAA
15003744 TTTTTTAAA-TTAAAAAATT
1 TTTTTTAAATTTAAAAAATT
* *** *
15003763 AATTTTT-AATTTTTTAAGTT
1 -TTTTTTAAATTTAAAAAATT
15003783 TTTTTTAAATTTAAAAAATT
1 TTTTTTAAATTTAAAAAATT
15003803 TTT
1 TTT
15003806 ATTTTTTAAA
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTTTAAATTTAAAAAATT
Found at i:15003885 original size:9 final size:9
Alignment explanation
Indices: 15003873--15003925 Score: 51
Period size: 8 Copynumber: 6.2 Consensus size: 9
15003863 AATTTTTTTG
15003873 AATTTTTAA
1 AATTTTTAA
15003882 AA-TTTTAA
1 AATTTTTAA
*
15003890 AA-TTTTAT
1 AATTTTTAA
15003898 AATCTTTT--
1 AAT-TTTTAA
*
15003906 AATTTTTAT
1 AATTTTTAA
15003915 AATTTTTAA
1 AATTTTTAA
15003924 AA
1 AA
15003926 ATATTTCATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 4 0.11
8 18 0.47
9 12 0.32
10 4 0.11
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (9 bp):
AATTTTTAA
Found at i:15003893 original size:17 final size:17
Alignment explanation
Indices: 15003884--15003925 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
15003874 ATTTTTAAAA
15003884 TTTTAAAATTTTATAAT
1 TTTTAAAATTTTATAAT
*
15003901 CTTTT-AATTTTTATAAT
1 -TTTTAAAATTTTATAAT
15003918 TTTTAAAA
1 TTTTAAAA
15003926 ATATTTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 4 0.19
17 13 0.62
18 4 0.19
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAAAATTTTATAAT
Found at i:15005186 original size:17 final size:18
Alignment explanation
Indices: 15005164--15005197 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15005154 ACTTTTCTGC
*
15005164 ACTAATGCA-ATAATAAT
1 ACTAATGAAGATAATAAT
15005181 ACTAATGAAGATAATAA
1 ACTAATGAAGATAATAA
15005198 AAGATACTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (18 bp):
ACTAATGAAGATAATAAT
Found at i:15017756 original size:22 final size:23
Alignment explanation
Indices: 15017658--15017788 Score: 85
Period size: 22 Copynumber: 5.8 Consensus size: 23
15017648 TTAGGATTAC
* *
15017658 ATTTCAAGGTCTAGAGTATT-AGG
1 ATTTCAAGGTTTAGGGT-TTAAGG
* *
15017681 ATTT-AGGGTTTCAGGATTT-AGG
1 ATTTCAAGGTTT-AGGGTTTAAGG
* * *
15017703 ATTTTAAGGTTTAAGGTTTAATG
1 ATTTCAAGGTTTAGGGTTTAAGG
*
15017726 A-TTCCAGGTTTAGGGTTT-AGG
1 ATTTCAAGGTTTAGGGTTTAAGG
** * *
15017747 ATTTTTAGGTTTGGGGTTTCAA-T
1 ATTTCAAGGTTTAGGGTTT-AAGG
15017770 ATTTCAAGGTTTAGGGTTT
1 ATTTCAAGGTTTAGGGTTT
15017789 TATGGTTTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
21 3 0.04
22 47 0.57
23 32 0.39
24 1 0.01
ACGTcount: A:0.24, C:0.05, G:0.27, T:0.44
Consensus pattern (23 bp):
ATTTCAAGGTTTAGGGTTTAAGG
Found at i:15017780 original size:45 final size:44
Alignment explanation
Indices: 15017687--15017788 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
15017677 TAGGATTTAG
* *
15017687 GGTTTCAGGATTTAGGATTTTAAGGTTTAAGGTTTAATGATTCCA
1 GGTTT-AGGGTTTAGGATTTTAAGGTTTAAGGTTTAATGATTCAA
* **
15017732 GGTTTAGGGTTTAGGATTTTTAGGTTTGGGGTTTCAAT-ATTTCAA
1 GGTTTAGGGTTTAGGATTTTAAGGTTTAAGGTTT-AATGA-TTCAA
15017777 GGTTTAGGGTTT
1 GGTTTAGGGTTT
15017789 TATGGTTTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
44 26 0.52
45 24 0.48
ACGTcount: A:0.22, C:0.05, G:0.28, T:0.45
Consensus pattern (44 bp):
GGTTTAGGGTTTAGGATTTTAAGGTTTAAGGTTTAATGATTCAA
Found at i:15020360 original size:56 final size:56
Alignment explanation
Indices: 15020292--15020399 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
15020282 AAAAACAAAG
* *
15020292 GAAAGAAAAGAAAGAGAAAAAAATTGTTAGTGTTGCAAAACAAAGATATGTCGAAA
1 GAAAGAAAAGAAAGAGAAAAAAATTATTAATGTTGCAAAACAAAGATATGTCGAAA
* *
15020348 GAAAGAAAAGAAAGAGAAAAAAGTTATTAATGTTGCAAAACAAATATATGTC
1 GAAAGAAAAGAAAGAGAAAAAAATTATTAATGTTGCAAAACAAAGATATGTC
15020400 AAGTTATAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (56 bp):
GAAAGAAAAGAAAGAGAAAAAAATTATTAATGTTGCAAAACAAAGATATGTCGAAA
Found at i:15023638 original size:22 final size:22
Alignment explanation
Indices: 15023588--15023664 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
15023578 TAAGGTGAGG
*
15023588 TTTATGGTTTAG-G-ATTA-GA
1 TTTAGGGTTTAGAGTATTAGGA
*
15023607 TTTCAAGGTTTAGAGTATTAGGA
1 TTT-AGGGTTTAGAGTATTAGGA
15023630 TTTAGGGTTTTA-AGGT-TTAGGA
1 TTTAGGG-TTTAGA-GTATTAGGA
15023652 TTTTAGGGTTTAG
1 -TTTAGGGTTTAG
15023665 GGCTTCAGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
19 3 0.06
20 8 0.17
21 1 0.02
22 18 0.38
23 18 0.38
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (22 bp):
TTTAGGGTTTAGAGTATTAGGA
Found at i:15023641 original size:8 final size:8
Alignment explanation
Indices: 15023630--15023713 Score: 54
Period size: 7 Copynumber: 11.2 Consensus size: 8
15023620 AGTATTAGGA
15023630 TTTAGGGT
1 TTTAGGGT
*
15023638 TTTAAGG-
1 TTTAGGGT
*
15023645 TTTAGGAT
1 TTTAGGGT
15023653 TTTAGGG-
1 TTTAGGGT
*
15023660 TTTAGGGC
1 TTTAGGGT
* *
15023668 TTCA-GGA
1 TTTAGGGT
*
15023675 TTTAAGGT
1 TTTAGGGT
15023683 TTTAGGG-
1 TTTAGGGT
*
15023690 TTTAAGG-
1 TTTAGGGT
15023697 TTTA-GGT
1 TTTAGGGT
*
15023704 TTTTGGGT
1 TTTAGGGT
15023712 TT
1 TT
15023714 AAGTTAAGAT
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
6 2 0.03
7 30 0.50
8 28 0.47
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (8 bp):
TTTAGGGT
Found at i:15023641 original size:23 final size:22
Alignment explanation
Indices: 15023615--15023707 Score: 75
Period size: 22 Copynumber: 4.1 Consensus size: 22
15023605 GATTTCAAGG
15023615 TTTAGAGTATTAGGATTTAGGGT
1 TTTAGAGT-TTAGGATTTAGGGT
15023638 TTTA-AGGTTTAGGATTTTAGGG-
1 TTTAGA-GTTTAGGA-TTTAGGGT
* * *
15023660 TTTAGGGCTTCAGGATTTAAGGT
1 TTTAGAG-TTTAGGATTTAGGGT
* *
15023683 TTTAGGGTTTAAGG-TTTAGGTT
1 TTTAGAGTTT-AGGATTTAGGGT
15023705 TTT
1 TTT
15023708 GGGTTTAAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
22 29 0.50
23 29 0.50
ACGTcount: A:0.22, C:0.02, G:0.30, T:0.46
Consensus pattern (22 bp):
TTTAGAGTTTAGGATTTAGGGT
Found at i:15023648 original size:15 final size:15
Alignment explanation
Indices: 15023611--15023699 Score: 65
Period size: 15 Copynumber: 5.9 Consensus size: 15
15023601 ATTAGATTTC
* *
15023611 AAGGTTTAGAGTATT
1 AAGGTTTAGGGTTTT
15023626 -AGGATTTAGGGTTTT
1 AAGG-TTTAGGGTTTT
*
15023641 AAGGTTTAGGATTTT
1 AAGGTTTAGGGTTTT
* *
15023656 AGGGTTTAGGG-CTT
1 AAGGTTTAGGGTTTT
* *
15023670 CAGGATTTAAGGTTTT
1 AAGG-TTTAGGGTTTT
* *
15023686 AGGGTTTAAGGTTT
1 AAGGTTTAGGGTTT
15023700 AGGTTTTTGG
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
14 7 0.12
15 44 0.76
16 7 0.12
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.43
Consensus pattern (15 bp):
AAGGTTTAGGGTTTT
Found at i:15027159 original size:13 final size:13
Alignment explanation
Indices: 15027126--15027159 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
15027116 TAAGCTTAGG
15027126 AAAATTTCTCAAA
1 AAAATTTCTCAAA
*
15027139 AAATATTTTTCAAA
1 AAA-ATTTCTCAAA
15027153 AAAATTT
1 AAAATTT
15027160 ACTATTGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAATTTCTCAAA
Found at i:15027463 original size:182 final size:182
Alignment explanation
Indices: 15027151--15027523 Score: 683
Period size: 182 Copynumber: 2.0 Consensus size: 182
15027141 ATATTTTTCA
15027151 AAAAAATTTACTATTGATAAGTATTCTTAAATTACTTTAATATTTTAGAAGAAATTTAAGAATAT
1 AAAAAATTTACTATTGATAAGTATTCTTAAATTACTTTAATATTTTAGAAGAAATTTAAGAATAT
* * * *
15027216 TTTATCACTTCAAGAGTATTCAAGATATCTATTAACACTTTTGAATAGGCTTCATTATTGAATTT
66 TTTATCACCTCAAGAGTATTCAAGATATCTATTAACACTTTTGAAGAGGCTCCATTATCGAATTT
15027281 GGACAAAAACATTTTTATGGGAATTTTTAATATTAGAAATTTTCTAAACAAC
131 GGACAAAAACATTTTTATGGGAATTTTTAATATTAGAAATTTTCTAAACAAC
15027333 AAAAAATTTACTATTGATAAGTATTCTTAAATTACTTTAATATTTTAGAAGAAATTTAAGAATAT
1 AAAAAATTTACTATTGATAAGTATTCTTAAATTACTTTAATATTTTAGAAGAAATTTAAGAATAT
*
15027398 TTTCTCACCTCAAGAGTATTCAAGATATCTATTAACACTTTTGAAGAGGCTCCATTATCGAATTT
66 TTTATCACCTCAAGAGTATTCAAGATATCTATTAACACTTTTGAAGAGGCTCCATTATCGAATTT
15027463 GGACAAAAACATTTTTATGGGAATTTTTAATATTAGAAATTTTCTAAACAAC
131 GGACAAAAACATTTTTATGGGAATTTTTAATATTAGAAATTTTCTAAACAAC
* *
15027515 CAAATATTT
1 AAAAAATTT
15027524 TTATAGTATC
Statistics
Matches: 184, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
182 184 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (182 bp):
AAAAAATTTACTATTGATAAGTATTCTTAAATTACTTTAATATTTTAGAAGAAATTTAAGAATAT
TTTATCACCTCAAGAGTATTCAAGATATCTATTAACACTTTTGAAGAGGCTCCATTATCGAATTT
GGACAAAAACATTTTTATGGGAATTTTTAATATTAGAAATTTTCTAAACAAC
Found at i:15027913 original size:3 final size:3
Alignment explanation
Indices: 15027885--15027936 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
15027875 GTGCAACACA
*
15027885 AAT AA- AAT AAAT AAT TAT AA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15027929 AAT AAT AA
1 AAT AAT AA
15027937 ATAGGGAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
2 4 0.09
3 37 0.84
4 3 0.07
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15028281 original size:16 final size:15
Alignment explanation
Indices: 15028255--15028284 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
15028245 CTAATATTTT
15028255 TCTTTATTTTCTTTC
1 TCTTTATTTTCTTTC
15028270 TCTTTCATTTTCTTT
1 TCTTT-ATTTTCTTT
15028285 TTTTCTCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (15 bp):
TCTTTATTTTCTTTC
Found at i:15037086 original size:35 final size:35
Alignment explanation
Indices: 15037047--15037122 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
15037037 GGTACTTGAT
*
15037047 TATTATTTATATGAAATCTT-TTCTTGGTTGATAAA
1 TATTATTTATATGAAAT-TTCTTCTTAGTTGATAAA
15037082 TATTATTTATATGAAATTTCTTCTTAGTTGATAAA
1 TATTATTTATATGAAATTTCTTCTTAGTTGATAAA
15037117 T-TTATT
1 TATTATT
15037123 CAGGTAACTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
34 7 0.18
35 32 0.82
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.54
Consensus pattern (35 bp):
TATTATTTATATGAAATTTCTTCTTAGTTGATAAA
Found at i:15038126 original size:2 final size:2
Alignment explanation
Indices: 15038119--15038144 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15038109 AGACAGATCA
15038119 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15038145 CTTGTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15039219 original size:22 final size:22
Alignment explanation
Indices: 15039193--15039236 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15039183 TGTATATTTA
*
15039193 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15039215 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15039237 GAAGATTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:15040136 original size:117 final size:117
Alignment explanation
Indices: 15039930--15040150 Score: 406
Period size: 117 Copynumber: 1.9 Consensus size: 117
15039920 TATAATGCAG
*
15039930 CTGAGGATTTCTTATGTTTCTTGCATTTGTATTATCTCTTTTATAAGCTATGATTAGTATCCTAT
1 CTGAGGATTTCTTATGTTTCTTGCATTTGTATTATCTCTTTTATAAGCTATGATTAGCATCCTAT
*
15039995 TTCTGTATCTGTATATCTGCATTCTTGGCCATCATTTCTAATGTTTCTGTAT
66 TTCTGTATCTGTATATCTGCATTCTTGGCCATAATTTCTAATGTTTCTGTAT
15040047 CTGAGGATTTCTTATGTTTCTTGCATTTGTATTATCTCTTTTATAAGCTATGATTAGCATCCTAT
1 CTGAGGATTTCTTATGTTTCTTGCATTTGTATTATCTCTTTTATAAGCTATGATTAGCATCCTAT
* *
15040112 TTCTGTATCTGTATCTCTGTATTCTTGGCCATAATTTCT
66 TTCTGTATCTGTATATCTGCATTCTTGGCCATAATTTCT
15040151 TGATCTTACA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 100 1.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (117 bp):
CTGAGGATTTCTTATGTTTCTTGCATTTGTATTATCTCTTTTATAAGCTATGATTAGCATCCTAT
TTCTGTATCTGTATATCTGCATTCTTGGCCATAATTTCTAATGTTTCTGTAT
Found at i:15045035 original size:36 final size:35
Alignment explanation
Indices: 15044958--15045035 Score: 81
Period size: 36 Copynumber: 2.2 Consensus size: 35
15044948 TAAAATTATA
15044958 TAATTATATAAATTTTATATTTTATTATAATTAATT
1 TAATTATATAAATTTTATATTTTATTAT-ATTAATT
*
15044994 GAATTAT-TAAATATTTAT-TTTTATCTAT-TTAAATTT
1 TAATTATATAAAT-TTTATATTTTAT-TATATT-AA-TT
15045030 TAATTA
1 TAATTA
15045036 AACAAAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
34 2 0.06
35 13 0.36
36 21 0.58
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (35 bp):
TAATTATATAAATTTTATATTTTATTATATTAATT
Found at i:15045141 original size:30 final size:29
Alignment explanation
Indices: 15045083--15045142 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
15045073 TAATTGAAAG
**
15045083 TTCAATTAAATAAAATAAATATTTAATAA
1 TTCAATTAAATAAAATAAATATAAAATAA
* *
15045112 TTCAATTAATTATAATAAAATATAAAATAA
1 TTCAATTAAATAAAAT-AAATATAAAATAA
15045142 T
1 T
15045143 AAAAAATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (29 bp):
TTCAATTAAATAAAATAAATATAAAATAA
Found at i:15055707 original size:11 final size:11
Alignment explanation
Indices: 15055673--15055707 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
15055663 TTTGATTCGA
*
15055673 TTTAAATTTTA
1 TTTAAATTTTT
15055684 TTTAAATTATTT
1 TTTAAATT-TTT
15055696 TTTAAATTTTT
1 TTTAAATTTTT
15055707 T
1 T
15055708 ATTTATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTAAATTTTT
Found at i:15056089 original size:39 final size:39
Alignment explanation
Indices: 15056037--15056142 Score: 158
Period size: 39 Copynumber: 2.7 Consensus size: 39
15056027 AAAAATTTTC
*
15056037 AATCCTACCAAACTATTGGAGGATTTAAATCTTAAATTA
1 AATCTTACCAAACTATTGGAGGATTTAAATCTTAAATTA
** * *
15056076 AATCTTATTAAACTATTGGAGGATTTGAATCTTATATTA
1 AATCTTACCAAACTATTGGAGGATTTAAATCTTAAATTA
*
15056115 AATCTTACCAAACTATTGGAAGATTTAA
1 AATCTTACCAAACTATTGGAGGATTTAA
15056143 TAAGTTTTCC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (39 bp):
AATCTTACCAAACTATTGGAGGATTTAAATCTTAAATTA
Found at i:15061779 original size:18 final size:18
Alignment explanation
Indices: 15061706--15062294 Score: 113
Period size: 18 Copynumber: 32.8 Consensus size: 18
15061696 GATTAAAAAG
* * *
15061706 CTTTGTGAATCTCGAAGT
1 CTTTGCGAATCTTGAAAT
*
15061724 CTTTACGAATCTTTG-AAT
1 CTTTGCGAATC-TTGAAAT
**
15061742 CTTTGCGAA--TTGGGAT
1 CTTTGCGAATCTTGAAAT
*
15061758 CTTTGTGAATCTTGAAAT
1 CTTTGCGAATCTTGAAAT
*
15061776 CTTTGCGAATC-TGAAAC
1 CTTTGCGAATCTTGAAAT
*
15061793 CTTTGCAAATC-TGAAAT
1 CTTTGCGAATCTTGAAAT
* **
15061810 CTTTGTGAATCTTGGGAT
1 CTTTGCGAATCTTGAAAT
* **
15061828 TTTTATG-A-CTGTGAAAT
1 CTTTGCGAATCT-TGAAAT
* ** *
15061845 CATTATGAATTTTTGAAAT
1 CTTTGCGAA-TCTTGAAAT
*
15061864 -TGTTGCAAATCTT-AGAAT
1 CT-TTGCGAATCTTGA-AAT
* * **
15061882 TTTTACGAATCTTGTGAT
1 CTTTGCGAATCTTGAAAT
* * * *
15061900 CATTGCAAATTTTGGAAT
1 CTTTGCGAATCTTGAAAT
* ** * * *
15061918 CATTATG-ATTTTTAAGAA
1 CTTTGCGAATCTTGAA-AT
* *
15061936 CTTTTACGAATCATGAAAT
1 C-TTTGCGAATCTTGAAAT
* * * **
15061955 TTTTGACAAATTTTGGGAT
1 CTTTG-CGAATCTTGAAAT
*
15061974 CTTTGCGAATCTTGGAAT
1 CTTTGCGAATCTTGAAAT
* * * * *
15061992 CATTACAAATTTTGGAAT
1 CTTTGCGAATCTTGAAAT
*
15062010 TTTTAG-GAATCTT-AAAGT
1 CTTT-GCGAATCTTGAAA-T
* * *
15062028 CTTGGTGAATCTTGGAAT
1 CTTTGCGAATCTTGAAAT
* * **
15062046 CTTTGCAAATTTTGGGAT
1 CTTTGCGAATCTTGAAAT
* * * * *
15062064 CTTTGTGACTTTTGGAAC
1 CTTTGCGAATCTTGAAAT
* *
15062082 CTTTGCAAATCTTGAAAC
1 CTTTGCGAATCTTGAAAT
*
15062100 CTTTGCGAATCTTAAAAT
1 CTTTGCGAATCTTGAAAT
* ** * * **
15062118 TTTTATGACTCTGGGGAT
1 CTTTGCGAATCTTGAAAT
* * * * * *
15062136 GTTTACAAATCTAGGAAC
1 CTTTGCGAATCTTGAAAT
*
15062154 CTTTGAGAATCTTGAAAT
1 CTTTGCGAATCTTGAAAT
* *
15062172 CTTTGAGAATCTTGAAAC
1 CTTTGCGAATCTTGAAAT
** * *
15062190 CTTTATGAATTTTAAAAT
1 CTTTGCGAATCTTGAAAT
** * * **
15062208 CTTTTTGAATCTAGGACC
1 CTTTGCGAATCTTGAAAT
* *
15062226 CTTTGCAAATCTTGAAAC
1 CTTTGCGAATCTTGAAAT
** * *
15062244 CTTTGTAAATCTTAAAAC
1 CTTTGCGAATCTTGAAAT
* *
15062262 CTTTGTGAATCTTGAATT
1 CTTTGCGAATCTTGAAAT
* *
15062280 CTTTGTGAATTTTGA
1 CTTTGCGAATCTTGA
15062295 TCCTTTACAA
Statistics
Matches: 408, Mismatches: 142, Indels: 42
0.69 0.24 0.07
Matches are distributed among these distances:
15 3 0.01
16 12 0.03
17 49 0.12
18 306 0.75
19 32 0.08
20 6 0.01
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (18 bp):
CTTTGCGAATCTTGAAAT
Found at i:15061808 original size:34 final size:35
Alignment explanation
Indices: 15061731--15061821 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 35
15061721 AGTCTTTACG
** * **
15061731 AATCTTTG-AATCTTTGCGAAT-TGGGATCTTTGTG
1 AATC-TTGAAATCTTTGCGAATCTGAAACCTTTGCA
15061765 AATCTTGAAATCTTTGCGAATCTGAAACCTTTGCA
1 AATCTTGAAATCTTTGCGAATCTGAAACCTTTGCA
*
15061800 AATC-TGAAATCTTTGTGAATCT
1 AATCTTGAAATCTTTGCGAATCT
15061822 TGGGATTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
33 3 0.06
34 34 0.69
35 12 0.24
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (35 bp):
AATCTTGAAATCTTTGCGAATCTGAAACCTTTGCA
Found at i:15061822 original size:52 final size:51
Alignment explanation
Indices: 15061706--15061823 Score: 139
Period size: 52 Copynumber: 2.3 Consensus size: 51
15061696 GATTAAAAAG
* * * * **
15061706 CTTTGTGAATCTCGAAGTCTTTACGAATCTTTGAATCTTTGCGAATTGGGAT
1 CTTTGTGAATCTTGAAATCTTTACGAATC-TTGAACCTTTGCAAATTGAAAT
*
15061758 CTTTGTGAATCTTGAAATCTTTGCGAATC-TGAAACCTTTGCAAATCTGAAAT
1 CTTTGTGAATCTTGAAATCTTTACGAATCTTG-AACCTTTGCAAAT-TGAAAT
15061810 CTTTGTGAATCTTG
1 CTTTGTGAATCTTG
15061824 GGATTTTTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
50 2 0.04
51 11 0.19
52 44 0.77
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (51 bp):
CTTTGTGAATCTTGAAATCTTTACGAATCTTGAACCTTTGCAAATTGAAAT
Found at i:15062135 original size:72 final size:72
Alignment explanation
Indices: 15062059--15062273 Score: 209
Period size: 72 Copynumber: 3.0 Consensus size: 72
15062049 TGCAAATTTT
* * * * * **
15062059 GGGATCTTTGTGACTTTTGGAACCTTTGCAAATCTTGAAACCTTTGCGAATCTTAAAATTTTTAT
1 GGGATCTTTATGAATCTAGGAACCTTTGCAAATCTTGAAACCTTTGAGAATCTTAAAACCTTTAT
*
15062124 GACTCTG
66 GAATCTG
* ** * *
15062131 GGGATGTTTACAAATCTAGGAACCTTTG-AGAATCTTGAAATCTTTGAGAATCTTGAAACCTTTA
1 GGGATCTTTATGAATCTAGGAACCTTTGCA-AATCTTGAAACCTTTGAGAATCTTAAAACCTTTA
* *
15062195 TGAATTTT
65 TGAATCTG
*** * * *
15062203 AAAATCTTTTTGAATCTAGGACCCTTTGCAAATCTTGAAACCTTTGTA-AATCTTAAAACCTTTG
1 GGGATCTTTATGAATCTAGGAACCTTTGCAAATCTTGAAACCTTTG-AGAATCTTAAAACCTTTA
15062267 TGAATCT
65 TGAATCT
15062274 TGAATTCTTT
Statistics
Matches: 113, Mismatches: 27, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
71 1 0.01
72 110 0.97
73 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (72 bp):
GGGATCTTTATGAATCTAGGAACCTTTGCAAATCTTGAAACCTTTGAGAATCTTAAAACCTTTAT
GAATCTG
Found at i:15062218 original size:54 final size:54
Alignment explanation
Indices: 15062151--15062294 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 54
15062141 CAAATCTAGG
* * *
15062151 AACCTTTGAGAATCTTGAAATCTTTGAGAATCTTGAAACCTTTATGAATTTTAA
1 AACCTTTGTGAATCTTGAAATCTTTGAGAATCTTGAAACCTTTATAAATCTTAA
* * * * ** *
15062205 AATCTTTTTGAATCTAGGACCCTTTGCA-AATCTTGAAACCTTTGTAAATCTTAA
1 AACCTTTGTGAATCTTGAAATCTTTG-AGAATCTTGAAACCTTTATAAATCTTAA
* * *
15062259 AACCTTTGTGAATCTTGAATTCTTTGTGAATTTTGA
1 AACCTTTGTGAATCTTGAAATCTTTGAGAATCTTGA
15062295 TCCTTTACAA
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
54 69 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (54 bp):
AACCTTTGTGAATCTTGAAATCTTTGAGAATCTTGAAACCTTTATAAATCTTAA
Found at i:15062323 original size:34 final size:33
Alignment explanation
Indices: 15062272--15062396 Score: 117
Period size: 34 Copynumber: 3.6 Consensus size: 33
15062262 CTTTGTGAAT
15062272 CTTGAAT-TCTTTGTGAATTTTGATCCTTTACAAA
1 CTTGAATCT-TTTGTGAATTTTGAT-CTTTACAAA
* * * *
15062306 CTTGAATCTTTTATGAATTTTAAACTTTGCAAAA
1 CTTGAATCTTTTGTGAATTTTGATCTTTAC-AAA
* * *
15062340 CTTAAATCTTTTGTAAATTTTGAATCTTTATGAAA
1 CTTGAATCTTTTGTGAATTTTG-ATCTTTA-CAAA
*
15062375 CTTGAATCATTTGGTGAATTTT
1 CTTGAATC-TTTTGTGAATTTT
15062397 TGAATTTTTG
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
33 5 0.07
34 40 0.56
35 16 0.22
36 11 0.15
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (33 bp):
CTTGAATCTTTTGTGAATTTTGATCTTTACAAA
Found at i:15062365 original size:18 final size:18
Alignment explanation
Indices: 15062344--15062406 Score: 51
Period size: 18 Copynumber: 3.5 Consensus size: 18
15062334 GCAAAACTTA
15062344 AATCTTTTGTAAATTTTG
1 AATCTTTTGTAAATTTTG
*
15062362 AATCTTTATG-AAA-CTTG
1 AATCTTT-TGTAAATTTTG
* *
15062379 AATCATTTGGTGAATTTTTG
1 AATC-TTTTGT-AAATTTTG
15062399 AAT-TTTTG
1 AATCTTTTG
15062407 AATCTTTATG
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
17 8 0.23
18 17 0.49
19 4 0.11
20 6 0.17
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (18 bp):
AATCTTTTGTAAATTTTG
Found at i:15062381 original size:17 final size:17
Alignment explanation
Indices: 15062337--15062387 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
15062327 AAACTTTGCA
*
15062337 AAACTTAAATCTTTTGT
1 AAACTTGAATCTTTTGT
*
15062354 AAATTTTGAATCTTTATG-
1 AAA-CTTGAATCTTT-TGT
*
15062372 AAACTTGAATCATTTG
1 AAACTTGAATCTTTTG
15062388 GTGAATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 2 0.07
17 12 0.43
18 12 0.43
19 2 0.07
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (17 bp):
AAACTTGAATCTTTTGT
Found at i:15062420 original size:10 final size:9
Alignment explanation
Indices: 15062344--15062422 Score: 51
Period size: 10 Copynumber: 8.7 Consensus size: 9
15062334 GCAAAACTTA
15062344 AATCTTTTG
1 AATCTTTTG
*
15062353 TAA-ATTTTG
1 -AATCTTTTG
15062362 AATCTTTATG
1 AATCTTT-TG
*
15062372 AAAC--TTG
1 AATCTTTTG
15062379 AATCATTTGGTG
1 AATC-TTT--TG
15062391 AAT-TTTTG
1 AATCTTTTG
15062399 AAT-TTTTG
1 AATCTTTTG
15062407 AATCTTTATG
1 AATCTTT-TG
15062417 AATCTT
1 AATCTT
15062423 GAGTATTTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
7 5 0.09
8 16 0.29
9 11 0.20
10 19 0.34
12 5 0.09
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.51
Consensus pattern (9 bp):
AATCTTTTG
Found at i:15062460 original size:20 final size:21
Alignment explanation
Indices: 15062421--15062462 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15062411 TTTATGAATC
* *
15062421 TTGAGTATTTTACAAAATTTT
1 TTGAGCATTATACAAAATTTT
15062442 TTGAGCATTATAC-AAATTTT
1 TTGAGCATTATACAAAATTTT
15062462 T
1 T
15062463 AAATCTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
TTGAGCATTATACAAAATTTT
Found at i:15063350 original size:18 final size:21
Alignment explanation
Indices: 15063329--15063369 Score: 61
Period size: 18 Copynumber: 2.1 Consensus size: 21
15063319 TTTGGTTTGA
15063329 TTTTTAGG-AGC-TT-TTAGG
1 TTTTTAGGTAGCATTCTTAGG
15063347 TTTTTAGGTAGCATTCTTAGG
1 TTTTTAGGTAGCATTCTTAGG
15063368 TT
1 TT
15063370 CCCATTGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 3 0.15
20 2 0.10
21 7 0.35
ACGTcount: A:0.17, C:0.07, G:0.24, T:0.51
Consensus pattern (21 bp):
TTTTTAGGTAGCATTCTTAGG
Found at i:15063901 original size:19 final size:18
Alignment explanation
Indices: 15063873--15063916 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
15063863 ATTTGATTCA
* *
15063873 TTTAAATTTTATTTTATT
1 TTTAATTTTTAATTTATT
15063891 TGTTAATTTTTAATTTATT
1 T-TTAATTTTTAATTTATT
15063910 TTTAATT
1 TTTAATT
15063917 ATTTTAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTAATTTTTAATTTATT
Found at i:15063927 original size:19 final size:19
Alignment explanation
Indices: 15063886--15063927 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
15063876 AAATTTTATT
*
15063886 TTATTTGTTAATTTTTAAT
1 TTATTTGTTAATTTTTAAG
*
15063905 TTATTT-TTAATTATTTTAG
1 TTATTTGTTAATT-TTTAAG
15063924 TTAT
1 TTAT
15063928 GAAGTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (19 bp):
TTATTTGTTAATTTTTAAG
Found at i:15066092 original size:33 final size:34
Alignment explanation
Indices: 15066055--15066132 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 34
15066045 AAAATGAGTT
**
15066055 TTATCCTATTAT-AAGTAATAAAACAAATAAGCC
1 TTATCCTATTATAAAAAAATAAAACAAATAAGCC
* * *
15066088 TTAT-CTATTATAAAAAAATAAAGCAAATGAGTC
1 TTATCCTATTATAAAAAAATAAAACAAATAAGCC
*
15066121 TTATCCCATTAT
1 TTATCCTATTAT
15066133 GATTAAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
32 7 0.19
33 24 0.65
34 6 0.16
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.33
Consensus pattern (34 bp):
TTATCCTATTATAAAAAAATAAAACAAATAAGCC
Found at i:15067419 original size:16 final size:17
Alignment explanation
Indices: 15067394--15067425 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15067384 AAATTATAAA
15067394 AAAAT-TTTTTAAAATC
1 AAAATATTTTTAAAATC
15067410 AAAATATTTTTAAAAT
1 AAAATATTTTTAAAAT
15067426 TATAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATATTTTTAAAATC
Found at i:15067456 original size:25 final size:26
Alignment explanation
Indices: 15067394--15067459 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 26
15067384 AAATTATAAA
*
15067394 AAAATTTTTTAAAATCAAAATATTTTT
1 AAAATTTTTAAAAATCAAAATA-TTTT
*
15067421 AAAA-TTATAAAAAT-AAAATA-TTT
1 AAAATTTTTAAAAATCAAAATATTTT
15067444 AAATATTTTTAAAAAT
1 AAA-ATTTTTAAAAAT
15067460 TTAAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 6 0.18
24 1 0.03
25 15 0.44
26 8 0.24
27 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
AAAATTTTTAAAAATCAAAATATTTT
Found at i:15067737 original size:18 final size:20
Alignment explanation
Indices: 15067716--15067752 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15067706 ATTTGAATCT
15067716 TACA-ATTTT-AATTTTTTA
1 TACATATTTTGAATTTTTTA
*
15067734 TACATTTTTTGAATTTTTT
1 TACATATTTTGAATTTTTT
15067753 GAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 4 0.25
19 4 0.25
20 8 0.50
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (20 bp):
TACATATTTTGAATTTTTTA
Found at i:15067751 original size:10 final size:10
Alignment explanation
Indices: 15067738--15067770 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
15067728 TTTTTATACA
15067738 TTTTTTGAA-
1 TTTTTTGAAT
15067747 TTTTTTGAAT
1 TTTTTTGAAT
*
15067757 TTTTTTGGAT
1 TTTTTTGAAT
15067767 TTTT
1 TTTT
15067771 ATTAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (10 bp):
TTTTTTGAAT
Found at i:15067770 original size:9 final size:9
Alignment explanation
Indices: 15067737--15067761 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15067727 TTTTTTATAC
15067737 ATTTTTTGA
1 ATTTTTTGA
15067746 ATTTTTTGA
1 ATTTTTTGA
15067755 ATTTTTT
1 ATTTTTT
15067762 TGGATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (9 bp):
ATTTTTTGA
Found at i:15067793 original size:13 final size:13
Alignment explanation
Indices: 15067777--15067801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15067767 TTTTATTAAA
15067777 ATTTTTATTTTTT
1 ATTTTTATTTTTT
15067790 ATTTTTATTTTT
1 ATTTTTATTTTT
15067802 CAATTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:15067826 original size:16 final size:15
Alignment explanation
Indices: 15067772--15067828 Score: 64
Period size: 16 Copynumber: 3.8 Consensus size: 15
15067762 TGGATTTTTA
*
15067772 TTAAAATTTTTATTT
1 TTAATATTTTTATTT
15067787 TT--TATTTTTATTT
1 TTAATATTTTTATTT
*
15067800 TTCAATTTTTTTATTT
1 TT-AATATTTTTATTT
15067816 TTAATAATTTTTA
1 TTAAT-ATTTTTA
15067829 AAAATATTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 12 0.34
15 5 0.14
16 18 0.51
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
TTAATATTTTTATTT
Found at i:15068093 original size:11 final size:11
Alignment explanation
Indices: 15068077--15068107 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
15068067 AATTATTTCA
*
15068077 TTTTTTATAAT
1 TTTTTTAAAAT
15068088 TTTTTTAAAAT
1 TTTTTTAAAAT
15068099 TTTTTTAAA
1 TTTTTTAAA
15068108 TGATGTGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTTAAAAT
Found at i:15069466 original size:25 final size:25
Alignment explanation
Indices: 15069410--15069466 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
15069400 AACAATATAT
* * * *
15069410 AATATATTTTATTTTATTCTTTTAA
1 AATATATTTTATTATACTATATTAA
*
15069435 AACATATTTTATTATACTATATTAA
1 AATATATTTTATTATACTATATTAA
*
15069460 TATATAT
1 AATATAT
15069467 ATATGTATAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (25 bp):
AATATATTTTATTATACTATATTAA
Found at i:15071062 original size:5 final size:5
Alignment explanation
Indices: 15071023--15071049 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15071013 CAAATTTGAG
15071023 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
15071050 CGTATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:15071766 original size:18 final size:18
Alignment explanation
Indices: 15071743--15071778 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15071733 ATTGTGATTT
15071743 GATTTGAATGATTCCCAA
1 GATTTGAATGATTCCCAA
*
15071761 GATTTGATTGATTCCCAA
1 GATTTGAATGATTCCCAA
15071779 AATCAAATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (18 bp):
GATTTGAATGATTCCCAA
Found at i:15072539 original size:17 final size:17
Alignment explanation
Indices: 15072519--15072551 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15072509 TTTTTTTTGG
15072519 TTTT-TTTATATTTTATA
1 TTTTATTTAT-TTTTATA
15072536 TTTTATTTATTTTTAT
1 TTTTATTTATTTTTAT
15072552 TAAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTATTTTTATA
Found at i:15072797 original size:27 final size:26
Alignment explanation
Indices: 15072767--15072821 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
15072757 TTTTAAAGCT
*
15072767 TTTTGTCT-ATTTTAGTTTTTTTTTTAA
1 TTTT-TCTAATTTTA-TTTTTTTATTAA
*
15072794 TTTTTTTAATTTTATTTTTTTATTAA
1 TTTTTCTAATTTTATTTTTTTATTAA
15072820 TT
1 TT
15072822 AAATTTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (26 bp):
TTTTTCTAATTTTATTTTTTTATTAA
Found at i:15073700 original size:19 final size:18
Alignment explanation
Indices: 15073667--15073735 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
15073657 CAATCATTAC
*
15073667 TTTTT-TTTTATTTTTTA
1 TTTTTATTTAATTTTTTA
*
15073684 TTTTTATTGTAATTTTTAA
1 TTTTTATT-TAATTTTTTA
* *
15073703 TTTTTTTTCTTATTTTTTA
1 TTTTTATT-TAATTTTTTA
*
15073722 -ATTTATTTAATTTT
1 TTTTTATTTAATTTT
15073736 AATCTTAAGT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
17 11 0.27
18 7 0.17
19 23 0.56
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.78
Consensus pattern (18 bp):
TTTTTATTTAATTTTTTA
Found at i:15073707 original size:20 final size:21
Alignment explanation
Indices: 15073676--15073730 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
15073666 CTTTTTTTTT
*
15073676 ATTTTTTA-TTTTTATT-GTA
1 ATTTTTAATTTTTTATTCGTA
*
15073695 ATTTTTAATTTTTT-TTCTTA
1 ATTTTTAATTTTTTATTCGTA
*
15073715 TTTTTTAATTTATTTA
1 ATTTTTAATTT-TTTA
15073731 ATTTTAATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 9 0.31
20 17 0.59
21 3 0.10
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (21 bp):
ATTTTTAATTTTTTATTCGTA
Found at i:15074250 original size:25 final size:26
Alignment explanation
Indices: 15074222--15074285 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
15074212 TTTTAGTATA
15074222 TAATAATATATATTTAT-TA-TTTAT
1 TAATAATATATATTTATATATTTTAT
*
15074246 T--TAATTTTATATTTATATATTTTAT
1 TAATAA-TATATATTTATATATTTTAT
*
15074271 TAAAAATAT-TATTTA
1 TAATAATATATATTTA
15074286 ATACATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
22 3 0.09
23 10 0.31
24 3 0.09
25 12 0.38
26 2 0.06
27 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
TAATAATATATATTTATATATTTTAT
Found at i:15074258 original size:16 final size:15
Alignment explanation
Indices: 15074227--15074270 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
15074217 GTATATAATA
15074227 ATATATATTTATTATTT
1 ATATAT-TTTA-TATTT
*
15074244 ATTTAATTTTATATTT
1 ATAT-ATTTTATATTT
15074260 ATATATTTTAT
1 ATATATTTTAT
15074271 TAAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 7 0.29
16 8 0.33
17 7 0.29
18 2 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATATTTTATATTT
Found at i:15074632 original size:17 final size:17
Alignment explanation
Indices: 15074598--15074641 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
15074588 TTTATATGAT
* * *
15074598 TTATATTTATATATGTA
1 TTATATTAATAAAAGTA
15074615 TTATATTAATAAAAGTA
1 TTATATTAATAAAAGTA
15074632 TTAT-TTAATA
1 TTATATTAATA
15074642 TTTTATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (17 bp):
TTATATTAATAAAAGTA
Found at i:15074633 original size:29 final size:28
Alignment explanation
Indices: 15074599--15074670 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
15074589 TTATATGATT
15074599 TATATTTATATATGTATTATATTAATAAAA
1 TATATTTATATAT-T-TTATATTAATAAAA
*
15074629 GTATTATTTA-ATATTTTATTTTAATAAAA
1 -TA-TATTTATATATTTTATATTAATAAAA
15074658 TATATTTATATAT
1 TATATTTATATAT
15074671 AATTAGTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 6 0.16
28 6 0.16
29 13 0.34
30 1 0.03
31 6 0.16
32 6 0.16
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (28 bp):
TATATTTATATATTTTATATTAATAAAA
Found at i:15077392 original size:23 final size:22
Alignment explanation
Indices: 15077349--15077392 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15077339 CCAAAAAAAT
*
15077349 TAATTAAAATTTTTTATATAAC
1 TAATTAAAATTTTTTACATAAC
* *
15077371 TAATTATATTTTTTTAGCATAA
1 TAATTAAAATTTTTTA-CATAA
15077393 AATTATTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (22 bp):
TAATTAAAATTTTTTACATAAC
Found at i:15080428 original size:26 final size:26
Alignment explanation
Indices: 15080399--15080461 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
15080389 GTCATATGTG
*
15080399 TGATAAATTTTCTTTCAATTAAATAT
1 TGATAAAATTTCTTTCAATTAAATAT
15080425 TGATAAAATTTCTTTCAATTAAATAT
1 TGATAAAATTTCTTTCAATTAAATAT
* *
15080451 TAAAAAAATTT
1 TGATAAAATTT
15080462 TAAATGACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.46
Consensus pattern (26 bp):
TGATAAAATTTCTTTCAATTAAATAT
Found at i:15087573 original size:51 final size:50
Alignment explanation
Indices: 15087440--15087577 Score: 168
Period size: 51 Copynumber: 2.7 Consensus size: 50
15087430 TAGATTTGCA
* * *
15087440 AAAAAAAGAATTATAAGAGAAAATTGATCTTAATAAACAAGCTTAACTTAC
1 AAAAGAAGAATTCTAAGAGAAAA-TGATTTTAATAAACAAGCTTAACTTAC
* * * *
15087491 AAAAGAAGAATTCTAAGAAAAAATGAATTTTAATAAACAAGTTTGACTTGC
1 AAAAGAAGAATTCTAAGAGAAAATG-ATTTTAATAAACAAGCTTAACTTAC
* *
15087542 AGAAGAAGAATTCTAAGAGAAAAGGATTTTTAATAA
1 AAAAGAAGAATTCTAAGAGAAAATGA-TTTTAATAA
15087578 GTTTGTATAG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
50 3 0.04
51 72 0.96
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (50 bp):
AAAAGAAGAATTCTAAGAGAAAATGATTTTAATAAACAAGCTTAACTTAC
Found at i:15089653 original size:31 final size:30
Alignment explanation
Indices: 15089616--15089683 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
15089606 AAAATATTTA
15089616 TTAAAAT-A-AAATATCTACAAATATTAACATT
1 TTAAAATGATAAAT-TCTA-AAATATTAACA-T
* *
15089647 TTAAAATGATAAATTTTAAAATATTATCAT
1 TTAAAATGATAAATTCTAAAATATTAACAT
15089677 TTAAAAT
1 TTAAAAT
15089684 TTTTAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
30 8 0.24
31 17 0.52
32 4 0.12
33 4 0.12
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (30 bp):
TTAAAATGATAAATTCTAAAATATTAACAT
Found at i:15090670 original size:15 final size:16
Alignment explanation
Indices: 15090640--15090673 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
15090630 GTATCTTAAA
15090640 ATTATAATTGTTTTAT
1 ATTATAATTGTTTTAT
15090656 ATTATAATT-TTTTAT
1 ATTATAATTGTTTTAT
15090671 ATT
1 ATT
15090674 TTCAAACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTATAATTGTTTTAT
Found at i:15105688 original size:20 final size:19
Alignment explanation
Indices: 15105644--15105689 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
15105634 TTTTATTAAT
* *
15105644 AAATAAATATCAATATTTA
1 AAATAAATATCAAAAATTA
15105663 AAATAAATATACAAAAATTA
1 AAATAAATAT-CAAAAATTA
*
15105683 ATATAAA
1 AAATAAA
15105690 ATTTAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATAAATATCAAAAATTA
Done.