Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26551601
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 64000 characters in sequence are not A, C, G, or T
File 78 of 130
Found at i:15811080 original size:18 final size:18
Alignment explanation
Indices: 15811058--15811108 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
15811048 TATAAGAAAT
15811058 AAATTTAATAATTTT-TA
1 AAATTTAATAATTTTATA
*
15811075 ATAATTTATTAATTTTATA
1 A-AATTTAATAATTTTATA
*
15811094 AATATTAAATAATTT
1 AA-ATTTAATAATTT
15811109 AAAACTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.04
18 14 0.50
19 13 0.46
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATTTAATAATTTTATA
Found at i:15811437 original size:2 final size:2
Alignment explanation
Indices: 15811425--15811474 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
15811415 CTAAAGCAAA
15811425 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15811466 AT AT AT AT A
1 AT AT AT AT A
15811475 CACAATCAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15811743 original size:16 final size:17
Alignment explanation
Indices: 15811724--15811758 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
15811714 AATATAATAT
15811724 ATTTTATA-TATATTTA
1 ATTTTATATTATATTTA
15811740 ATTTTATATTTATATTTA
1 ATTTTATA-TTATATTTA
15811758 A
1 A
15811759 AATAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTTATATTATATTTA
Found at i:15813612 original size:13 final size:11
Alignment explanation
Indices: 15813564--15813605 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
15813554 AAAATAAAAA
15813564 TATAATTTT-T
1 TATAATTTTAT
*
15813574 T-TAATTTCAT
1 TATAATTTTAT
15813584 ATATAATTTTAT
1 -TATAATTTTAT
15813596 TATAATTTTA
1 TATAATTTTA
15813606 AATTATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 6 0.22
10 2 0.07
11 11 0.41
12 8 0.30
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TATAATTTTAT
Found at i:15813688 original size:2 final size:2
Alignment explanation
Indices: 15813681--15813709 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15813671 CAACCGATTG
15813681 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15813710 TGCTTTAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15813841 original size:18 final size:18
Alignment explanation
Indices: 15813818--15813861 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
15813808 TATGCTTTTT
*
15813818 AAAATAATAATAAAATTA
1 AAAATAATAATAAAAATA
15813836 AAAATAATAATAAAAATA
1 AAAATAATAATAAAAATA
*
15813854 AAATTAAT
1 AAAATAAT
15813862 TATTATATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATAATAATAAAAATA
Found at i:15814885 original size:22 final size:23
Alignment explanation
Indices: 15814851--15814907 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
15814841 AATTCAAACG
* *
15814851 ATAAACTATTAAAG-ATTAAAAA
1 ATAAAATAATAAAGAATTAAAAA
*
15814873 ATAAAATAATAAAGAATTAAAGA
1 ATAAAATAATAAAGAATTAAAAA
*
15814896 TTAAAA-AATAAA
1 ATAAAATAATAAA
15814908 ATAATAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (23 bp):
ATAAAATAATAAAGAATTAAAAA
Found at i:15814892 original size:30 final size:30
Alignment explanation
Indices: 15814858--15814916 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
15814848 ACGATAAACT
15814858 ATTAAAGATTAAAAAATAAAATAATAAAGA
1 ATTAAAGATTAAAAAATAAAATAATAAAGA
15814888 ATTAAAGATTAAAAAATAAAATAATAAAG
1 ATTAAAGATTAAAAAATAAAATAATAAAG
15814917 TATAAGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (30 bp):
ATTAAAGATTAAAAAATAAAATAATAAAGA
Found at i:15814949 original size:11 final size:11
Alignment explanation
Indices: 15814927--15814956 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
15814917 TATAAGACTA
15814927 ATATTAATATTT
1 ATATT-ATATTT
15814939 ATATTATATTT
1 ATATTATATTT
15814950 ATATTAT
1 ATATTAT
15814957 TAATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTATATTT
Found at i:15815484 original size:22 final size:23
Alignment explanation
Indices: 15815458--15815513 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
15815448 TAAAATCCCT
15815458 AAAATTCTAAAA-AAAAATT-TA
1 AAAATTCTAAAACAAAAATTCTA
15815479 AGAAATTC-AAAACAAAAATTCTA
1 A-AAATTCTAAAACAAAAATTCTA
*
15815502 AAACTTCTAAAA
1 AAAATTCTAAAA
15815514 TTTTGAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 5 0.17
22 18 0.60
23 7 0.23
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.25
Consensus pattern (23 bp):
AAAATTCTAAAACAAAAATTCTA
Found at i:15815504 original size:9 final size:9
Alignment explanation
Indices: 15815492--15815627 Score: 51
Period size: 10 Copynumber: 14.4 Consensus size: 9
15815482 AATTCAAAAC
15815492 AAAAATTCT
1 AAAAATTCT
*
15815501 AAAACTTCT
1 AAAAATTCT
*
15815510 -AAAATTTT
1 AAAAATTCT
** *
15815518 GAAATTTTCAA
1 -AAAAATTC-T
*
15815529 AAAAATTTT
1 AAAAATTCT
*
15815538 AAAAAAATCT
1 -AAAAATTCT
* *
15815548 AAAAAATAT
1 AAAAATTCT
*
15815557 AAAAAAAT-T
1 -AAAAATTCT
*
15815566 AAAAATTTTT
1 AAAAA-TTCT
* *
15815576 GAAAATTTT
1 AAAAATTCT
15815585 AAAAAATTCT
1 -AAAAATTCT
*
15815595 AACAAATTTT
1 AA-AAATTCT
*
15815605 CAAAAACTCT
1 -AAAAATTCT
15815615 AAAAATTCT
1 AAAAATTCT
15815624 AAAA
1 AAAA
15815628 TAAATTCAAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
8 11 0.12
9 36 0.38
10 46 0.48
11 2 0.02
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAAATTCT
Found at i:15815543 original size:10 final size:10
Alignment explanation
Indices: 15815528--15815654 Score: 82
Period size: 10 Copynumber: 13.0 Consensus size: 10
15815518 GAAATTTTCA
15815528 AAAAAATTTT
1 AAAAAATTTT
* *
15815538 AAAAAAATCT
1 AAAAAATTTT
*
15815548 AAAAAA-TAT
1 AAAAAATTTT
*
15815557 AAAAAA-ATT
1 AAAAAATTTT
15815566 -AAAAATTTT
1 AAAAAATTTT
**
15815575 TGAAAATTTT
1 AAAAAATTTT
*
15815585 AAAAAATTCT
1 AAAAAATTTT
*
15815595 AACAAATTTT
1 AAAAAATTTT
* * *
15815605 CAAAAACTCT
1 AAAAAATTTT
*
15815615 -AAAAATTCT
1 AAAAAATTTT
* *
15815624 AAAATAAATTC
1 AAAA-AATTTT
15815635 AAAAAATTTT
1 AAAAAATTTT
*
15815645 AGAAAATTTT
1 AAAAAATTTT
15815655 TTAATTTTTA
Statistics
Matches: 90, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
8 5 0.06
9 19 0.21
10 59 0.66
11 7 0.08
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:15815690 original size:10 final size:10
Alignment explanation
Indices: 15815677--15815724 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
15815667 TGTTTTTAGG
15815677 TTTTT-AAAA
1 TTTTTAAAAA
15815686 TTTTTAAAAA
1 TTTTTAAAAA
15815696 TTTTTGAAAAAA
1 TTTTT--AAAAA
*
15815708 TTTTTAGAAA
1 TTTTTAAAAA
15815718 TTTTTAA
1 TTTTTAA
15815725 TGTTTTTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 5 0.15
10 19 0.56
12 10 0.29
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:15815800 original size:19 final size:19
Alignment explanation
Indices: 15815767--15815809 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
15815757 ATATATGAAA
15815767 AAAAATTTTACAA-TTTTT
1 AAAAATTTTACAATTTTTT
*
15815785 AAAAATTTTAAGAATTTTTT
1 AAAAATTTT-ACAATTTTTT
15815805 AAAAA
1 AAAAA
15815810 ATATTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 10 0.45
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAAATTTTACAATTTTTT
Found at i:15815804 original size:21 final size:20
Alignment explanation
Indices: 15815780--15815827 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
15815770 AATTTTACAA
15815780 TTTTTAAAAAT-TTTAAGAATT
1 TTTTTAAAAATATTT--GAATT
*
15815801 TTTTAAAAAATATTTGAATT
1 TTTTTAAAAATATTTGAATT
15815821 TTTTTAA
1 TTTTTAA
15815828 TTTTCTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.46
21 10 0.42
22 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
TTTTTAAAAATATTTGAATT
Found at i:15815822 original size:19 final size:18
Alignment explanation
Indices: 15815767--15815823 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 18
15815757 ATATATGAAA
*
15815767 AAAAATTTTACAATTTTT
1 AAAAATTTTAGAATTTTT
15815785 AAAAATTTTAAGAATTTTTT
1 AAAAATTTT-AGAA-TTTTT
15815805 AAAAAATATTT-GAATTTTT
1 -AAAAAT-TTTAGAATTTTT
15815824 TTAATTTTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
18 9 0.26
19 8 0.24
20 8 0.24
21 6 0.18
22 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
AAAAATTTTAGAATTTTT
Found at i:15816452 original size:62 final size:62
Alignment explanation
Indices: 15816308--15816514 Score: 269
Period size: 63 Copynumber: 3.4 Consensus size: 62
15816298 AAAAATAGCC
* *
15816308 TTAAATAATCTCC-TTT-AAAAAATATTAAAGATTATTTAAGATATTTTTGATCAAAAACACT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTAT-AAAAACACT
* * *
15816369 TAAAATAATCTCCTTTTAAAAAAATATTAGAGATTATTTAAGGTATTTTTTACTTAAAACACT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTA-TAAAAACACT
* * * *
15816432 TTAAATAATC-CCTTTTAAAAAAATATTAAAGATGATTTAAAGCATTTTTTATAAAAACGCT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTATAAAAACACT
* *
15816493 TTAAATAATGT-GTTTTAAAAAA
1 TTAAATAATCTCCTTTTAAAAAA
15816515 TTGAAGAGTA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
61 39 0.30
62 40 0.31
63 48 0.38
64 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (62 bp):
TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTATAAAAACACT
Found at i:15816495 original size:61 final size:61
Alignment explanation
Indices: 15816308--15816514 Score: 253
Period size: 62 Copynumber: 3.4 Consensus size: 61
15816298 AAAAATAGCC
15816308 TTAAATAATCTCC-TTT-AAAAAATATTAAAGATTATTT-AAGATATTTTTGATCAAAAACACT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAAGAT-TTTTT-AT-AAAAACACT
* * * *
15816369 TAAAATAATCTCCTTTTAAAAAAATATTAGAGATTATTTAAGGTATTTTTTACTTAAAACACT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAAG-ATTTTTTA-TAAAAACACT
* *
15816432 TTAAATAATC-CCTTTTAAAAAAATATTAAAGATGATTTAAAGCATTTTTTATAAAAACGCT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAAG-ATTTTTTATAAAAACACT
* *
15816493 TTAAATAATGT-GTTTTAAAAAA
1 TTAAATAATCTCCTTTTAAAAAA
15816515 TTGAAGAGTA
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
61 39 0.31
62 40 0.31
63 38 0.30
64 8 0.06
65 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (61 bp):
TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAAGATTTTTTATAAAAACACT
Found at i:15817781 original size:17 final size:18
Alignment explanation
Indices: 15817748--15817782 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15817738 ATAGAATATT
15817748 AATAAATAATAATTTTAA
1 AATAAATAATAATTTTAA
*
15817766 AATAAA-AATCATTTTAA
1 AATAAATAATAATTTTAA
15817783 TTAAGGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
AATAAATAATAATTTTAA
Found at i:15819327 original size:97 final size:99
Alignment explanation
Indices: 15819219--15819403 Score: 284
Period size: 99 Copynumber: 1.9 Consensus size: 99
15819209 TTAGAAGATA
* *
15819219 AAAAGATATATATTTAAATT-ATATATAAATTATTAGAAAATTAATTTTGGATAACT-TATTTTT
1 AAAAGATATATATTTAAATTAATATATAAATTATTAGAAAATTAATTTTAGATAACTATAATTTT
* * *
15819282 TTAATATTTTTATTTATTTGAGATTTTAAAAAAT
66 TAAATACTTTTATTTAATTGAGATTTTAAAAAAT
*
15819316 AAAAGATATATATTTAAATTAGATATATAAATTATTAGGAAATTAATTTTAGATAACTAATAATT
1 AAAAGATATATATTTAAATTA-ATATATAAATTATTAGAAAATTAATTTTAGATAACT-ATAATT
15819381 TTTAAATACTTTTATTTAATTGA
64 TTTAAATACTTTTATTTAATTGA
15819404 TAAATACCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
97 20 0.26
99 34 0.44
101 24 0.31
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (99 bp):
AAAAGATATATATTTAAATTAATATATAAATTATTAGAAAATTAATTTTAGATAACTATAATTTT
TAAATACTTTTATTTAATTGAGATTTTAAAAAAT
Found at i:15819504 original size:132 final size:130
Alignment explanation
Indices: 15819316--15819552 Score: 334
Period size: 132 Copynumber: 1.8 Consensus size: 130
15819306 TTTAAAAAAT
** *
15819316 AAAAGATATATATTTAAATTAGATATATAAATTATTAGGAAATTAATTTTAGATAACTAATAATT
1 AAAAGATATATATTTAAATTAGATATATAAATTATTAAAAAATTAATTTGAGATAACTAATAATT
15819381 TTTAAATACTTTTATTTAATTGATAAATACCATAAAATTATTTAAAAAATTAATTTTATGAGATA
66 TTTAAATACTTTTATTTAATTGATAAATACCATAAAATTATTTAAAAAATTAATTTTATGAGATA
* *
15819446 AAAAGATATATA-TTAAATTATATATGTGCAAATTATTAAAAAAATTAATTTCGA-ATAACTAAT
1 AAAAGATATATATTTAAATTAGATATAT--AAATTATT-AAAAAATTAATTT-GAGATAACTAAT
** * **
15819509 AATTTTTAAATGTTTTTATTTAGTTGATAAATACTGTAAAATTA
62 AATTTTTAAATACTTTTATTTAATTGATAAATACCATAAAATTA
15819553 GAAATTGTCC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
129 13 0.14
130 12 0.13
131 8 0.09
132 59 0.63
133 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (130 bp):
AAAAGATATATATTTAAATTAGATATATAAATTATTAAAAAATTAATTTGAGATAACTAATAATT
TTTAAATACTTTTATTTAATTGATAAATACCATAAAATTATTTAAAAAATTAATTTTATGAGATA
Found at i:15819758 original size:6 final size:6
Alignment explanation
Indices: 15819749--15819775 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15819739 TAATTATAAA
15819749 AAAGTT AAAGTT AAAGTT AAAGTT AAA
1 AAAGTT AAAGTT AAAGTT AAAGTT AAA
15819776 TTGAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.30
Consensus pattern (6 bp):
AAAGTT
Found at i:15820415 original size:15 final size:15
Alignment explanation
Indices: 15820395--15820426 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15820385 AGATAAAAGG
*
15820395 ATATATATTTAAATT
1 ATATATATGTAAATT
15820410 ATATATATGTAAATT
1 ATATATATGTAAATT
15820425 AT
1 AT
15820427 TAGAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATATATATGTAAATT
Found at i:15820431 original size:132 final size:126
Alignment explanation
Indices: 15820233--15820475 Score: 369
Period size: 131 Copynumber: 1.9 Consensus size: 126
15820223 ATATATATCT
15820233 AAATTATTAAAAAATTAATTTTAAAGATAAAAATATATACTTAAATTATATATCTAAATTATTAG
1 AAATTATTAAAAAATTAATTTTAAAGATAAAAATATATACTTAAATTATATATCTAAATTATTAG
*
15820298 AAAATTAATTTTTTGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATA
66 AAAATTAA-TTTTAGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATA
* * * *
15820360 AAATTATTAGAAAATTATTTTTAGAAGATAAAAGGATATATATTTAAATTATATATATGTAAATT
1 AAATTATTAAAAAATTAATTTTA-AAGATAAAA--ATATATACTTAAA-T-TATATATCTAAATT
**
15820425 ATTAGAAAATTAATTTTAGATAACTAATAATTTTTAAATGTTTTTATTTAT
61 ATTAGAAAATTAATTTTAGATAACTAATAATTTTTAAATACTTTTATTTAT
15820476 GTGATTATTT
Statistics
Matches: 104, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
127 21 0.20
128 9 0.09
130 12 0.12
131 36 0.35
132 26 0.25
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (126 bp):
AAATTATTAAAAAATTAATTTTAAAGATAAAAATATATACTTAAATTATATATCTAAATTATTAG
AAAATTAATTTTAGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATA
Found at i:15820510 original size:131 final size:127
Alignment explanation
Indices: 15820241--15820513 Score: 329
Period size: 131 Copynumber: 2.1 Consensus size: 127
15820231 CTAAATTATT
*
15820241 AAAAAATTAATTTTAAAGATAAAAATATATACTTAAATTATATATCTAAATTATTAGAAAATTAA
1 AAAAAATTATTTTTAAAGATAAAAATATATACTTAAATTATATATCTAAATTATTAGAAAATTAA
* * * * *
15820306 TTTTTTGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATAAAATTATT
66 TTTTTAGATAACTAATAATTTTTAAATACTTTTATTTATGTGATAAATGTTATAAAATGATA
* * *
15820368 AGAAAATTATTTTTAGAAGATAAAAGGATATATATTTAAATTATATATATGTAAATTATTAGAAA
1 AAAAAATTATTTTTA-AAGATAAAA--ATATATACTTAAA-T-TATATATCTAAATTATTAGAAA
** * *
15820433 ATTAA-TTTTAGATAACTAATAATTTTTAAATGTTTTTATTTATGTGAT-TAT-TTTTAAAA-GA
61 ATTAATTTTTAGATAACTAATAATTTTTAAATACTTTTATTTATGTGATAAATGTTATAAAATGA
15820494 TA
126 TA
* *
15820496 AAAATATATATATTTAAA
1 AAAAAAT-TATTTTTAAA
15820514 TTGTATGCAT
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
127 13 0.10
128 18 0.15
129 14 0.11
130 14 0.11
131 39 0.31
132 26 0.21
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (127 bp):
AAAAAATTATTTTTAAAGATAAAAATATATACTTAAATTATATATCTAAATTATTAGAAAATTAA
TTTTTAGATAACTAATAATTTTTAAATACTTTTATTTATGTGATAAATGTTATAAAATGATA
Found at i:15824083 original size:2 final size:2
Alignment explanation
Indices: 15824076--15824109 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
15824066 TGATTCTGTG
15824076 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15824110 TTTGCTTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:15824301 original size:21 final size:22
Alignment explanation
Indices: 15824255--15824304 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
15824245 TAATAAAAAT
* *
15824255 AAAATTAATTATTATATTGATG
1 AAAATTAATTATTATAATGAAG
*
15824277 -AAATTGATTATTATAAT-AAG
1 AAAATTAATTATTATAATGAAG
15824297 AAAATTAA
1 AAAATTAA
15824305 AATTAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (22 bp):
AAAATTAATTATTATAATGAAG
Found at i:15824917 original size:18 final size:19
Alignment explanation
Indices: 15824882--15824920 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
15824872 TTGTTTTTAG
15824882 AGAGAAAGAGGAGAAAAAA
1 AGAGAAAGAGGAGAAAAAA
15824901 AGAG-AAGAGAGAGAAAAAA
1 AGAGAAAGAG-GAGAAAAAA
15824920 A
1 A
15824921 AAGGAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
AGAGAAAGAGGAGAAAAAA
Found at i:15825195 original size:3 final size:3
Alignment explanation
Indices: 15825189--15825222 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
15825179 TTTTTTTTTC
15825189 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
15825223 TATTGATTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:15825265 original size:6 final size:6
Alignment explanation
Indices: 15825254--15825291 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
15825244 TGGGTATTCC
* *
15825254 TTATTT TTATTT TTA-TT TTATTA CTATTT TTATTT TTA
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTA
15825292 ATGATTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:15825409 original size:57 final size:57
Alignment explanation
Indices: 15825318--15825586 Score: 319
Period size: 59 Copynumber: 4.7 Consensus size: 57
15825308 AAATTCTAAA
*
15825318 AAAAAATATTTTGAGG-AAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGCTTCT
1 AAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
* * * * *
15825373 AAAAAATATTTTCGAGGAAAAGGTAAAAGTATCAATTTTCCTTCAAAATAAAATTTTT
1 AAAAAATATTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
* ** * *
15825431 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTTTT
1 -AAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-GTTTCT
* * * *
15825491 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTTTC-
1 AAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
*
15825548 AGAAAAATATTTTGAAGAAAAGTTGAAAGTATCAATTTT
1 A-AAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
15825587 TTTTGCACAA
Statistics
Matches: 185, Mismatches: 22, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
55 12 0.06
56 4 0.02
57 57 0.31
58 15 0.08
59 88 0.48
60 9 0.05
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
Found at i:15825487 original size:17 final size:17
Alignment explanation
Indices: 15825465--15825498 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15825455 TGAAAGTATC
*
15825465 AATTTTTTTTAAAAATA
1 AATTTTTTTAAAAAATA
15825482 AATTTTTTTAAAAAATA
1 AATTTTTTTAAAAAATA
15825499 TTTTTGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTTTTTTAAAAAATA
Found at i:15825503 original size:16 final size:16
Alignment explanation
Indices: 15825465--15825495 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15825455 TGAAAGTATC
15825465 AATTTTTTTTAAAAAT
1 AATTTTTTTTAAAAAT
*
15825481 AAATTTTTTTAAAAA
1 AATTTTTTTTAAAAA
15825496 ATATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTTTTTTAAAAAT
Found at i:15825587 original size:116 final size:115
Alignment explanation
Indices: 15825317--15825590 Score: 372
Period size: 116 Copynumber: 2.4 Consensus size: 115
15825307 AAAATTCTAA
* **
15825317 AAAAAAATATTTTG-AGGAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGCTTCTAAAAAATA
1 AAAAAAATATTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAGCTTCTAAAAAATA
* * *
15825381 TTTTCGAGGAAAAGGTAAAAGTATCAATTTTCCTTCAAAATAAAATTTTT
66 TTTTCGAGAAAAAGGTAAAAGTATCAATTTTCCTTCAAAATAAAAGTTTC
** *
15825431 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTTTTAAAAA
1 AAAAAAATA-TTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTAAAAAT-AA-GCTTCTAAAAA
* * * * *
15825496 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC-TCAAAATTAAAGTTTC
63 ATATTTTCGAGAAAAAGGTAAAAGTATCAATTTTCCTTCAAAATAAAAGTTTC
*
15825548 AGAAAAATATTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTT
1 AAAAAAATATTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTT
15825591 GCACAAAAGC
Statistics
Matches: 141, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
114 9 0.06
115 5 0.04
116 65 0.46
117 23 0.16
118 39 0.28
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.38
Consensus pattern (115 bp):
AAAAAAATATTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAGCTTCTAAAAAATA
TTTTCGAGAAAAAGGTAAAAGTATCAATTTTCCTTCAAAATAAAAGTTTC
Found at i:15827149 original size:22 final size:22
Alignment explanation
Indices: 15827121--15827197 Score: 145
Period size: 22 Copynumber: 3.5 Consensus size: 22
15827111 GACCCCCGAA
*
15827121 TGTCGTCATCAACATCGCCATT
1 TGTCGTCATCAGCATCGCCATT
15827143 TGTCGTCATCAGCATCGCCATT
1 TGTCGTCATCAGCATCGCCATT
15827165 TGTCGTCATCAGCATCGCCATT
1 TGTCGTCATCAGCATCGCCATT
15827187 TGTCGTCATCA
1 TGTCGTCATCA
15827198 TCATGTCGAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.32
Consensus pattern (22 bp):
TGTCGTCATCAGCATCGCCATT
Found at i:15828854 original size:28 final size:29
Alignment explanation
Indices: 15828822--15828877 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
15828812 TAATAAAATA
* *
15828822 TTTAATGTGATATTTGAATT-TAAATTTT
1 TTTAATATAATATTTGAATTATAAATTTT
*
15828850 TTTAATATAATGTTTGAATTATAAATTT
1 TTTAATATAATATTTGAATTATAAATTT
15828878 ATTAATTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (29 bp):
TTTAATATAATATTTGAATTATAAATTTT
Found at i:15828882 original size:28 final size:26
Alignment explanation
Indices: 15828834--15828890 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 26
15828824 TAATGTGATA
*
15828834 TTTGAATTTAAATTTTTTTAATATAATG
1 TTTGAATTTAAATTTTATTAAT-TAA-G
15828862 TTTGAATTATAAA-TTTATTAATTAAG
1 TTTGAATT-TAAATTTTATTAATTAAG
15828888 TTT
1 TTT
15828891 ATTTTTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 4 0.15
27 3 0.11
28 16 0.59
29 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (26 bp):
TTTGAATTTAAATTTTATTAATTAAG
Found at i:15832344 original size:11 final size:11
Alignment explanation
Indices: 15832295--15832348 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
15832285 AAAATAAAAA
15832295 TATAATTTT-T
1 TATAATTTTAT
*
15832305 T-TAATATTTTT
1 TATAAT-TTTAT
*
15832316 TTTAATTTTAT
1 TATAATTTTAT
15832327 ATATAATTTTAT
1 -TATAATTTTAT
15832339 TATAATTTTA
1 TATAATTTTA
15832349 AATTATATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
9 4 0.11
10 4 0.11
11 16 0.42
12 14 0.37
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATAATTTTAT
Found at i:15832372 original size:12 final size:12
Alignment explanation
Indices: 15832299--15832373 Score: 50
Period size: 12 Copynumber: 6.3 Consensus size: 12
15832289 TAAAAATATA
15832299 ATTTTTT-TAAT
1 ATTTTTTATAAT
*
15832310 ATTTTTTTTAAT
1 ATTTTTTATAAT
*
15832322 -TTTATATATAAT
1 ATTT-TTTATAAT
*
15832334 -TTTATTATAAT
1 ATTTTTTATAAT
* *
15832345 -TTTAAATTATATT
1 ATTT--TTTATAAT
15832358 ATTTTTTATAAT
1 ATTTTTTATAAT
15832370 ATTT
1 ATTT
15832374 CATTGTTTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
11 19 0.37
12 23 0.44
13 7 0.13
14 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTTTTTATAAT
Found at i:15832429 original size:2 final size:2
Alignment explanation
Indices: 15832422--15832452 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15832412 TGCAACCGAT
15832422 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15832453 TGCTTTAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15832599 original size:18 final size:18
Alignment explanation
Indices: 15832562--15832605 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15832552 TATGCTTTTT
* *
15832562 AAAATAATAATAAGATTA
1 AAAATAATAATAAAAATA
*
15832580 AAAATAGTAATAAAAATA
1 AAAATAATAATAAAAATA
*
15832598 AAATTAAT
1 AAAATAAT
15832606 TATTATATTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATAATAATAAAAATA
Found at i:15832643 original size:21 final size:22
Alignment explanation
Indices: 15832597--15832646 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
15832587 TAATAAAAAT
* *
15832597 AAAATTAATTATTATATTGATG
1 AAAATTAATTATTATAATGAAG
*
15832619 -AAATTGATTATTATAAT-AAG
1 AAAATTAATTATTATAATGAAG
15832639 AAAATTAA
1 AAAATTAA
15832647 AATTAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (22 bp):
AAAATTAATTATTATAATGAAG
Found at i:15833634 original size:22 final size:23
Alignment explanation
Indices: 15833608--15833664 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
15833598 AATTCAAATG
* *
15833608 ATAAACTATTAAAG-ATTAAAAA
1 ATAAAATAATAAAGAATTAAAAA
*
15833630 ATAAAATAATAAAGAATTAAAGA
1 ATAAAATAATAAAGAATTAAAAA
*
15833653 TTAAAA-AATAAA
1 ATAAAATAATAAA
15833665 ATAATAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (23 bp):
ATAAAATAATAAAGAATTAAAAA
Found at i:15833649 original size:30 final size:30
Alignment explanation
Indices: 15833615--15833673 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
15833605 ATGATAAACT
15833615 ATTAAAGATTAAAAAATAAAATAATAAAGA
1 ATTAAAGATTAAAAAATAAAATAATAAAGA
15833645 ATTAAAGATTAAAAAATAAAATAATAAAG
1 ATTAAAGATTAAAAAATAAAATAATAAAG
15833674 TATAAGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (30 bp):
ATTAAAGATTAAAAAATAAAATAATAAAGA
Found at i:15833706 original size:11 final size:11
Alignment explanation
Indices: 15833684--15833713 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
15833674 TATAAGACTA
15833684 ATATTAATATTT
1 ATATT-ATATTT
15833696 ATATTATATTT
1 ATATTATATTT
15833707 ATATTAT
1 ATATTAT
15833714 TAATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTATATTT
Found at i:15833766 original size:17 final size:17
Alignment explanation
Indices: 15833744--15833776 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15833734 TAATAACTGT
15833744 TAAATGAGTATCATAAC
1 TAAATGAGTATCATAAC
15833761 TAAATGAGTATCATAA
1 TAAATGAGTATCATAA
15833777 TTAATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (17 bp):
TAAATGAGTATCATAAC
Found at i:15834244 original size:22 final size:23
Alignment explanation
Indices: 15834218--15834273 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
15834208 TAAAATCCCT
15834218 AAAATTCTAAAA-AAAAATT-TA
1 AAAATTCTAAAACAAAAATTCTA
15834239 AGAAATTC-AAAACAAAAATTCTA
1 A-AAATTCTAAAACAAAAATTCTA
*
15834262 AAACTTCTAAAA
1 AAAATTCTAAAA
15834274 TTTTGAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 5 0.17
22 18 0.60
23 7 0.23
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.25
Consensus pattern (23 bp):
AAAATTCTAAAACAAAAATTCTA
Found at i:15834264 original size:9 final size:9
Alignment explanation
Indices: 15834252--15834387 Score: 60
Period size: 10 Copynumber: 14.4 Consensus size: 9
15834242 AATTCAAAAC
15834252 AAAAATTCT
1 AAAAATTCT
*
15834261 AAAACTTCT
1 AAAAATTCT
*
15834270 -AAAATTTT
1 AAAAATTCT
** *
15834278 GAAATTTTCAA
1 -AAAAATTC-T
*
15834289 AAAAATTTT
1 AAAAATTCT
*
15834298 AAAAAAATCT
1 -AAAAATTCT
*
15834308 AAAAAATCT
1 AAAAATTCT
*
15834317 AAAAAAAT-T
1 -AAAAATTCT
*
15834326 AAAAATTTTT
1 AAAAA-TTCT
* *
15834336 GAAAATTTT
1 AAAAATTCT
15834345 AAAAAATTCT
1 -AAAAATTCT
*
15834355 AACAAATTTT
1 AA-AAATTCT
*
15834365 CAAAAACTCT
1 -AAAAATTCT
15834375 AAAAATTCT
1 AAAAATTCT
15834384 AAAA
1 AAAA
15834388 TAAATTCAAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
8 11 0.11
9 37 0.39
10 46 0.48
11 2 0.02
ACGTcount: A:0.57, C:0.09, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAAATTCT
Found at i:15834303 original size:10 final size:10
Alignment explanation
Indices: 15834288--15834414 Score: 82
Period size: 10 Copynumber: 13.0 Consensus size: 10
15834278 GAAATTTTCA
15834288 AAAAAATTTT
1 AAAAAATTTT
* *
15834298 AAAAAAATCT
1 AAAAAATTTT
*
15834308 AAAAAA-TCT
1 AAAAAATTTT
*
15834317 AAAAAA-ATT
1 AAAAAATTTT
15834326 -AAAAATTTT
1 AAAAAATTTT
**
15834335 TGAAAATTTT
1 AAAAAATTTT
*
15834345 AAAAAATTCT
1 AAAAAATTTT
*
15834355 AACAAATTTT
1 AAAAAATTTT
* * *
15834365 CAAAAACTCT
1 AAAAAATTTT
*
15834375 -AAAAATTCT
1 AAAAAATTTT
* *
15834384 AAAATAAATTC
1 AAAA-AATTTT
15834395 AAAAAATTTT
1 AAAAAATTTT
*
15834405 AGAAAATTTT
1 AAAAAATTTT
15834415 TTAATTTTTA
Statistics
Matches: 91, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
8 5 0.05
9 20 0.22
10 59 0.65
11 7 0.08
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:15834450 original size:10 final size:10
Alignment explanation
Indices: 15834437--15834484 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
15834427 TGTTTTTAGG
15834437 TTTTT-AAAA
1 TTTTTAAAAA
15834446 TTTTTAAAAA
1 TTTTTAAAAA
15834456 TTTTTGAAAAAA
1 TTTTT--AAAAA
*
15834468 TTTTTAGAAA
1 TTTTTAAAAA
15834478 TTTTTAA
1 TTTTTAA
15834485 TGTTTTTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 5 0.15
10 19 0.56
12 10 0.29
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:15835216 original size:61 final size:62
Alignment explanation
Indices: 15835029--15835235 Score: 278
Period size: 63 Copynumber: 3.4 Consensus size: 62
15835019 AAAAATAGCC
*
15835029 TTAAATAATCTCC-TTT-AAAAAATATTAAAGATTATTTAAGGTATTTTTGATCAAAAACACT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTAT-AAAAACACT
* * *
15835090 TAAAATAATCTCCTTTTAAAAAAATATTAGAGATTATTTAAGGTATTTTTTACTTAAAACACT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTA-TAAAAACACT
* * * *
15835153 TTAAATAATC-CCTTTTAAAAAAATATTAAAGATGATTTAAAGCATTTTTTATAAAAACGCT
1 TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTATAAAAACACT
* *
15835214 TTAAATAATGT-GTTTTAAAAAA
1 TTAAATAATCTCCTTTTAAAAAA
15835236 TTGAAGAGTA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
61 39 0.30
62 40 0.31
63 49 0.38
64 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.40
Consensus pattern (62 bp):
TTAAATAATCTCCTTTTAAAAAAATATTAAAGATTATTTAAGGTATTTTTTATAAAAACACT
Found at i:15836516 original size:17 final size:18
Alignment explanation
Indices: 15836483--15836517 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15836473 ATAGAATATT
15836483 AATAAATAATAATTTTAA
1 AATAAATAATAATTTTAA
*
15836501 AATAAA-AATCATTTTAA
1 AATAAATAATAATTTTAA
15836518 TTAAGGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
AATAAATAATAATTTTAA
Found at i:15838064 original size:97 final size:99
Alignment explanation
Indices: 15837956--15838140 Score: 284
Period size: 99 Copynumber: 1.9 Consensus size: 99
15837946 TTAGAAGATA
* *
15837956 AAAAGATATATATTTAAATT-ATATATAAATTATTAGAAAATTAATTTTGGATAACT-TATTTTT
1 AAAAGATATATATTTAAATTAATATATAAATTATTAGAAAATTAATTTTAGATAACTATAATTTT
* * *
15838019 TTAATATTTTTATTTATTTGAGATTTTAAAAAAT
66 TAAATACTTTTATTTAATTGAGATTTTAAAAAAT
*
15838053 AAAAGATATATATTTAAATTAGATATATAAATTATTAGGAAATTAATTTTAGATAACTAATAATT
1 AAAAGATATATATTTAAATTA-ATATATAAATTATTAGAAAATTAATTTTAGATAACT-ATAATT
15838118 TTTAAATACTTTTATTTAATTGA
64 TTTAAATACTTTTATTTAATTGA
15838141 TAAATACCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
97 20 0.26
99 34 0.44
101 24 0.31
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (99 bp):
AAAAGATATATATTTAAATTAATATATAAATTATTAGAAAATTAATTTTAGATAACTATAATTTT
TAAATACTTTTATTTAATTGAGATTTTAAAAAAT
Found at i:15838242 original size:133 final size:130
Alignment explanation
Indices: 15838053--15838290 Score: 327
Period size: 133 Copynumber: 1.8 Consensus size: 130
15838043 TTTAAAAAAT
** *
15838053 AAAAGATATATATTTAAATTAGATATATAAATTATTAGGAAATTAATTTTAGATAACTAATAATT
1 AAAAGATATATATTTAAATTAGATATATAAATTATTAAAAAATTAATTTGAGATAACTAATAATT
15838118 TTTAAATACTTTTATTTAATTGATAAATACCATAAAATTATTTAAAAAATTAATTTTATGAGATA
66 TTTAAATACTTTTATTTAATTGATAAATACCATAAAATTATTTAAAAAATTAATTTTATGAGATA
* *
15838183 AAAAGATATATA-TTAAATTATATATGTGCAAATTATTAAAAAAAATTAATTTCGA-ATAACTAA
1 AAAAGATATATATTTAAATTAGATATAT--AAATTATT--AAAAAATTAATTT-GAGATAACTAA
** * **
15838246 TAATTTTTAAATGTTTTTATTTAGTTGATAAATACTGTAAAATTA
61 TAATTTTTAAATACTTTTATTTAATTGATAAATACCATAAAATTA
15838291 GAAATTGTCC
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
129 13 0.14
130 12 0.13
131 8 0.09
133 59 0.63
134 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (130 bp):
AAAAGATATATATTTAAATTAGATATATAAATTATTAAAAAATTAATTTGAGATAACTAATAATT
TTTAAATACTTTTATTTAATTGATAAATACCATAAAATTATTTAAAAAATTAATTTTATGAGATA
Found at i:15838961 original size:23 final size:24
Alignment explanation
Indices: 15838935--15839005 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 24
15838925 ATTAAGTTTG
*
15838935 ATATTTTTAAAATT-TTAAAAGAT
1 ATATTTTTAAAATTATTAAAAAAT
* *
15838958 ATATATCT-AAATTATTAAAAAAT
1 ATATTTTTAAAATTATTAAAAAAT
* *
15838981 -TAATTTTAAAA-GA-TAAAAAAT
1 ATATTTTTAAAATTATTAAAAAAT
15839002 ATAT
1 ATAT
15839006 ACTTAAATTA
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
21 8 0.22
22 12 0.32
23 17 0.46
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (24 bp):
ATATTTTTAAAATTATTAAAAAAT
Found at i:15839149 original size:15 final size:15
Alignment explanation
Indices: 15839129--15839160 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15839119 AGATAAAAGG
*
15839129 ATATATATTTAAATT
1 ATATATATGTAAATT
15839144 ATATATATGTAAATT
1 ATATATATGTAAATT
15839159 AT
1 AT
15839161 TAGAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATATATATGTAAATT
Found at i:15839163 original size:131 final size:128
Alignment explanation
Indices: 15838966--15839209 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 128
15838956 ATATATATCT
15838966 AAATTATTAAAAAATTAATTTTAAAAGATAAAAAATATATACTTAAATTATATATCTAAATTATT
1 AAATTATTAAAAAATTAATTTTAAAAGATAAAAAATATATACTTAAATTATATATCTAAATTATT
*
15839031 AGAAAATTAATTTTTGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATA
66 AGAAAATTAATTTTAGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATA
* * * * * *
15839094 AAATTATTAGAAAATTATTTTTAGAAGATAAAAGGATATATATTTAAATTATATATATGTAAATT
1 AAATTATTAAAAAATTAATTTTAAAAGATAAAA-AATATATACTTAAA-T-TATATATCTAAATT
**
15839159 ATTAGAAAATTAATTTTAGATAACTAATAATTTTTAAATGTTTTTATTTAT
63 ATTAGAAAATTAATTTTAGATAACTAATAATTTTTAAATACTTTTATTTAT
15839210 GTGATTATTT
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
128 30 0.29
129 12 0.12
130 1 0.01
131 61 0.59
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.45
Consensus pattern (128 bp):
AAATTATTAAAAAATTAATTTTAAAAGATAAAAAATATATACTTAAATTATATATCTAAATTATT
AGAAAATTAATTTTAGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATA
Found at i:15839244 original size:131 final size:128
Alignment explanation
Indices: 15838974--15839247 Score: 338
Period size: 131 Copynumber: 2.1 Consensus size: 128
15838964 CTAAATTATT
*
15838974 AAAAAATTAATTTTAAAAGATAAAAAATATATACTTAAATTATATATCTAAATTATTAGAAAATT
1 AAAAAATTATTTTTAAAAGATAAAAAATATATACTTAAATTATATATCTAAATTATTAGAAAATT
* * * * *
15839039 AATTTTTGATAACTAATAATTTTTAAATACTTTTATTTATTTTATAAATGTTATAAAATTATT
66 AATTTTAGATAACTAATAATTTTTAAATACTTTTATTTATGTGATAAATGTTATAAAATGATA
* * * * *
15839102 AGAAAATTATTTTTAGAAGATAAAAGGATATATATTTAAATTATATATATGTAAATTATTAGAAA
1 AAAAAATTATTTTTAAAAGATAAAA-AATATATACTTAAA-T-TATATATCTAAATTATTAGAAA
** * *
15839167 ATTAATTTTAGATAACTAATAATTTTTAAATGTTTTTATTTATGTGAT-TAT-TTTTAAAA-GAT
63 ATTAATTTTAGATAACTAATAATTTTTAAATACTTTTATTTATGTGATAAATGTTATAAAATGAT
15839229 A
128 A
* *
15839230 AAAATATATATATTTAAA
1 AAAAAAT-TATTTTTAAA
15839248 TTGTATGCAT
Statistics
Matches: 123, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
128 29 0.24
129 27 0.22
130 3 0.02
131 64 0.52
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (128 bp):
AAAAAATTATTTTTAAAAGATAAAAAATATATACTTAAATTATATATCTAAATTATTAGAAAATT
AATTTTAGATAACTAATAATTTTTAAATACTTTTATTTATGTGATAAATGTTATAAAATGATA
Found at i:15842795 original size:2 final size:2
Alignment explanation
Indices: 15842790--15842831 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
15842780 ATTGTGTGTG
15842790 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15842831 T
1 T
15842832 TTTGCTTTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15842979 original size:18 final size:18
Alignment explanation
Indices: 15842942--15842985 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15842932 TATGCTTTTT
* *
15842942 AAAATAATAATAAGATTA
1 AAAATAATAATAAAAATA
*
15842960 AAAATAGTAATAAAAATA
1 AAAATAATAATAAAAATA
*
15842978 AAATTAAT
1 AAAATAAT
15842986 TATTATATTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATAATAATAAAAATA
Found at i:15843023 original size:21 final size:22
Alignment explanation
Indices: 15842977--15843026 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
15842967 TAATAAAAAT
* *
15842977 AAAATTAATTATTATATTGATG
1 AAAATTAATTATTATAATGAAG
*
15842999 -AAATTGATTATTATAAT-AAG
1 AAAATTAATTATTATAATGAAG
15843019 AAAATTAA
1 AAAATTAA
15843027 AATTAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (22 bp):
AAAATTAATTATTATAATGAAG
Found at i:15843628 original size:19 final size:19
Alignment explanation
Indices: 15843604--15843644 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
15843594 GATTGTTTAG
15843604 AGAGAA-AGAAGAGAAAAAA
1 AGAGAAGAG-AGAGAAAAAA
15843623 AGAGAAGAGAGAGAAAAAA
1 AGAGAAGAGAGAGAAAAAA
15843642 AGA
1 AGA
15843645 AGGAAAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (19 bp):
AGAGAAGAGAGAGAAAAAA
Found at i:15843639 original size:17 final size:15
Alignment explanation
Indices: 15843608--15843651 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
15843598 GTTTAGAGAG
15843608 AAAGAAGAGAAAAAA
1 AAAGAAGAGAAAAAA
*
15843623 AGAGAAGAGAGAGAAAA
1 AAAGAAGAGA-A-AAAA
15843640 AAAGAAG-GAAAA
1 AAAGAAGAGAAAA
15843652 TCTAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 2 0.08
15 10 0.40
16 3 0.12
17 10 0.40
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAAGAAGAGAAAAAA
Found at i:15843988 original size:6 final size:6
Alignment explanation
Indices: 15843977--15844010 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
15843967 GTATTCCTTA
**
15843977 TTTTAT TTTTAT TTTTAT TACTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
15844011 TTAATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:15844020 original size:18 final size:18
Alignment explanation
Indices: 15843980--15844021 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
15843970 TTCCTTATTT
*
15843980 TATTTTTATTTTTATTAC
1 TATTTTTATTTTTATTAA
15843998 TATTTTTATTTTT-TTAA
1 TATTTTTATTTTTATTAA
15844015 TGATTTT
1 T-ATTTT
15844022 CTTAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (18 bp):
TATTTTTATTTTTATTAA
Found at i:15844116 original size:57 final size:58
Alignment explanation
Indices: 15844041--15844294 Score: 280
Period size: 59 Copynumber: 4.4 Consensus size: 58
15844031 AAAATTCTAA
*
15844041 AAAAAATATTTTTAAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAAT-AAGTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
* * * * *
15844098 AAAAAATATTTTCGAGGAAAAGGTAAAAGTATCAATTTTCCTTCAAAATAAAATTTTT
1 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
* * * ** *
15844156 AAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAATTTTTTT
1 AAAAA-ATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
* * * * * * *
15844215 AAAAAAATATTTTTGAGAAAAAATTGAAATTATCAATTTTTCTCAAAATTAAAGTTTC-
1 -AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
* *
15844273 AGAAAATA-TTTTGAAGAAAAGT
1 AAAAAATATTTTTGAGGAAAAGT
15844295 ATTTTTTCTT
Statistics
Matches: 167, Mismatches: 27, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
56 11 0.07
57 52 0.31
58 11 0.07
59 88 0.53
60 5 0.03
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.37
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAGTTTCT
Found at i:15844166 original size:116 final size:115
Alignment explanation
Indices: 15844017--15844294 Score: 310
Period size: 116 Copynumber: 2.4 Consensus size: 115
15844007 TTTTTTAATG
* * *
15844017 ATTTTCTTAAAAAAAAAATTCTAAAAAAAATATTTTTAAGGAAAAGTTAAAAGTATCAATTTTCC
1 ATTTTCTTCAAAATAAAATT-TTAAAAAAATATTTTTAA-GAAAAGTTAAAAGTATCAATTTTCC
* *
15844082 TTAAAAATAA-GTTTCT-AAAAAATATTTTCGAGGAAAAGGTAAAAGTATCA
64 TTAAAAATAATGTTTCTAAAAAAATATTTTCGAGAAAAAAGTAAAAGTATCA
* * *
15844132 ATTTTCCTTCAAAATAAAATTTTTAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTT
1 ATTTT-CTTCAAAATAAAA-TTTTAAAAAAATATTTTT-AAGAAAAGTTAAAAGTATCAATTTTC
* * * * * *
15844197 CTTAAAAATAATTTTTTTAAAAAAATATTTTTGAGAAAAAATTGAAATTATCA
63 CTTAAAAATAATGTTTCTAAAAAAATATTTTCGAGAAAAAAGTAAAAGTATCA
* * * * *
15844250 ATTTT-TCTCAAAATTAAAGTTTCAGAAAATATTTTGAAGAAAAGT
1 ATTTTCT-TCAAAATAAAATTTTAAAAAAATATTTTTAAGAAAAGT
15844295 ATTTTTTCTT
Statistics
Matches: 137, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
115 14 0.10
116 72 0.53
117 18 0.13
118 33 0.24
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.37
Consensus pattern (115 bp):
ATTTTCTTCAAAATAAAATTTTAAAAAAATATTTTTAAGAAAAGTTAAAAGTATCAATTTTCCTT
AAAAATAATGTTTCTAAAAAAATATTTTCGAGAAAAAAGTAAAAGTATCA
Found at i:15844211 original size:16 final size:15
Alignment explanation
Indices: 15844190--15844228 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
15844180 TGAAAGTATC
15844190 AATTTTTCTTAAAAAT
1 AATTTTT-TTAAAAAT
15844206 AATTTTTTTAAAAA-
1 AATTTTTTTAAAAAT
15844220 AATATTTTT
1 AAT-TTTTT
15844229 GAGAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 12 0.55
16 7 0.32
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (15 bp):
AATTTTTTTAAAAAT
Found at i:15846116 original size:27 final size:29
Alignment explanation
Indices: 15846085--15846151 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 29
15846075 TTAAATTATA
* *
15846085 ATAAAA-TATTTAATGTGATATTTGAATT
1 ATAAAATTATTTAATATAATATTTGAATT
* *
15846113 -TAAAATTTTTTAATATAATGTTTGAATT
1 ATAAAATTATTTAATATAATATTTGAATT
*
15846141 ATAAATTTATT
1 ATAAAATTATT
15846152 AATTAAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 5 0.16
28 18 0.58
29 8 0.26
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (29 bp):
ATAAAATTATTTAATATAATATTTGAATT
Found at i:15847290 original size:173 final size:170
Alignment explanation
Indices: 15846995--15847338 Score: 607
Period size: 173 Copynumber: 2.0 Consensus size: 170
15846985 ATAATCTCTT
*
15846995 CCTGCGATTGTTTTCTCCATTTATTGATATGACAAAGAATTGGATAGTCGTGCAGTGAGGATGGC
1 CCTGCGATTGTTTTCTCCATTTATTGATATGACAAAGAATTGGATAGTCGTGCAGTGAGGATGAC
15847060 AACAAGTCGTTCCACTCTCGATAAGACTATTCCAAGTTTGTCCTTTATATCAGGCATTACTCCGT
66 AACAAGTCGTTCCACTCTCGATAAGACTATTCCAAGTTTGTCCTTTATATCAGGCATTACTCCGT
*
15847125 TAGGCAATTCCCGTTCAAAGGAGGAATGCAGCAAGGCAGCCAA
131 TAGGCAATTCCCATTC-AA--AGGAATGCAGCAAGGCAGCCAA
* * *
15847168 CCTGCTATTGTTTTCTCCATTTATTGATATGACAATGAATTGGATAGTCGTGCAGTGGGGATGAC
1 CCTGCGATTGTTTTCTCCATTTATTGATATGACAAAGAATTGGATAGTCGTGCAGTGAGGATGAC
*
15847233 AACAAGTGGTTCCACTCTCGATAAGACTATTCCAAGTTTGTCCTTTATATCAGGCATTACTCCGT
66 AACAAGTCGTTCCACTCTCGATAAGACTATTCCAAGTTTGTCCTTTATATCAGGCATTACTCCGT
15847298 TAGGCAATTCCCATTCAAAGGAATGCAGCAAGGCAGCCAA
131 TAGGCAATTCCCATTCAAAGGAATGCAGCAAGGCAGCCAA
15847338 C
1 C
15847339 AAGTGCGTTA
Statistics
Matches: 165, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
170 23 0.14
172 2 0.01
173 140 0.85
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (170 bp):
CCTGCGATTGTTTTCTCCATTTATTGATATGACAAAGAATTGGATAGTCGTGCAGTGAGGATGAC
AACAAGTCGTTCCACTCTCGATAAGACTATTCCAAGTTTGTCCTTTATATCAGGCATTACTCCGT
TAGGCAATTCCCATTCAAAGGAATGCAGCAAGGCAGCCAA
Found at i:15849630 original size:11 final size:11
Alignment explanation
Indices: 15849595--15849634 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
15849585 TATAATTTTT
15849595 TAATTTTA-T-
1 TAATTTTATTA
15849604 TAATTTTATATA
1 TAATTTTAT-TA
15849616 TAATTTTATTA
1 TAATTTTATTA
15849627 TAATTTTA
1 TAATTTTA
15849635 AATTATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
11 11 0.39
12 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TAATTTTATTA
Found at i:15849654 original size:30 final size:31
Alignment explanation
Indices: 15849584--15849646 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
15849574 AAAAATAAAA
*
15849584 ATATAA-TTT-TT-TAATTTTATTAATTTTAT
1 ATATAATTTTATTATAATTTTA-TAATTATAT
15849613 ATATAATTTTATTATAATTTTA-AATTATAT
1 ATATAATTTTATTATAATTTTATAATTATAT
15849643 ATAT
1 ATAT
15849647 TTTTTTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.20
30 14 0.47
31 2 0.07
32 8 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (31 bp):
ATATAATTTTATTATAATTTTATAATTATAT
Found at i:15849721 original size:2 final size:2
Alignment explanation
Indices: 15849714--15849769 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
15849704 ACTGATTGTG
15849714 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15849756 TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA T
15849770 TTTGCTTTAG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15849918 original size:18 final size:18
Alignment explanation
Indices: 15849881--15849924 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15849871 TATGCTTTTT
* *
15849881 AAAATAATAATAAGATTA
1 AAAATAATAATAAAAATA
*
15849899 AAAATAGTAATAAAAATA
1 AAAATAATAATAAAAATA
*
15849917 AAATTAAT
1 AAAATAAT
15849925 TATTATATTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATAATAATAAAAATA
Found at i:15849962 original size:21 final size:22
Alignment explanation
Indices: 15849916--15849996 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 22
15849906 TAATAAAAAT
* *
15849916 AAAATTAATTATTATATTGATG
1 AAAATTAATTATTATAATGAAG
*
15849938 -AAATTGATTATTATAAT-AAG
1 AAAATTAATTATTATAATGAAG
* *
15849958 AAAATTAA-AATTAATAATGAGAT
1 AAAATTAATTATT-ATAATGA-AG
15849981 ATAAATTTAATTATTA
1 A-AAA-TTAATTATTA
15849997 AAATATTAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
20 5 0.11
21 26 0.58
22 1 0.02
23 2 0.04
24 3 0.07
25 5 0.11
26 3 0.07
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (22 bp):
AAAATTAATTATTATAATGAAG
Found at i:15850768 original size:17 final size:18
Alignment explanation
Indices: 15850727--15850768 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
15850717 TAATACGAAT
*
15850727 ATATATATAATAACATAA
1 ATATAAATAATAACATAA
*
15850745 TTA-AAATAATAA-ATAA
1 ATATAAATAATAACATAA
15850761 ATATAAAT
1 ATATAAAT
15850769 TATACATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 6 0.30
17 12 0.60
18 2 0.10
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (18 bp):
ATATAAATAATAACATAA
Found at i:15851052 original size:17 final size:17
Alignment explanation
Indices: 15851030--15851068 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
15851020 TATAATAATT
15851030 ATTAAATAAGTATCATA
1 ATTAAATAAGTATCATA
* *
15851047 ATTAAATGAGTTTCATA
1 ATTAAATAAGTATCATA
15851064 ATTAA
1 ATTAA
15851069 TTTTATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (17 bp):
ATTAAATAAGTATCATA
Found at i:15851579 original size:128 final size:125
Alignment explanation
Indices: 15851445--15851687 Score: 344
Period size: 128 Copynumber: 1.9 Consensus size: 125
15851435 ATAGATATCT
*
15851445 AAATTATTAAAAAACTAATTTTAAAAAATAAAAAG-ATATATATTTAAATTATATATTTAATTAT
1 AAATTATTAAAAAACTAATTTTAAAAAATAAAAAGAATATATATTTAAATTATATA-TAAATTAT
* *
15851509 TAAAAAATTAATTTTGGATTACTAATAATTTTTTAATATGTTTATTTATTTGATAAATACCATA
65 TAAAAAATTAATTTTGGATAACT--T-ATTTTTAAATATGTTTATTTATTTGATAAATACCATA
* * * * *
15851573 AAATTATTAATAAATTAGTTTTAGAAGATAAAAAGATATATATATTTAAATTATATATAAATTAT
1 AAATTATTAAAAAACTAATTTTAAAAAATAAAAAGA-ATATATATTTAAATTATATATAAATTAT
* *
15851638 TAGAAAATTAATTTTGGATAACTTATTTTTAAATATTTTTATTTATTTGA
65 TAAAAAATTAATTTTGGATAACTTATTTTTAAATATGTTTATTTATTTGA
15851688 GATTTTAAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
126 24 0.23
127 1 0.01
128 30 0.29
129 28 0.27
130 20 0.19
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (125 bp):
AAATTATTAAAAAACTAATTTTAAAAAATAAAAAGAATATATATTTAAATTATATATAAATTATT
AAAAAATTAATTTTGGATAACTTATTTTTAAATATGTTTATTTATTTGATAAATACCATA
Found at i:15851729 original size:98 final size:97
Alignment explanation
Indices: 15851610--15851787 Score: 263
Period size: 100 Copynumber: 1.8 Consensus size: 97
15851600 ATAAAAAGAT
15851610 ATATATATTTAAATTATATATAAATTATTA-GAAAATTAATTTTGGATAACT-T-ATTTTTAAAT
1 ATATATATTTAAATTATATATAAATTATTATG-AAATTAA-TTTGGATAACTATAATTTTTAAAT
* *
15851672 ATTTTTATTTATTTGAGATTTTAAAAAGTAAAAG
64 ACTTTTATTTAATTGAGATTTTAAAAAGTAAAAG
*
15851706 ATATATATTTCAATTAGATATATAAATTATTATGAAATTAATTTGGATAACTAATAATTTTTAAA
1 ATATATATTTAAATT--ATATATAAATTATTATGAAATTAATTTGGATAACT-ATAATTTTTAAA
15851771 TACTTTTATTTAATTGA
63 TACTTTTATTTAATTGA
15851788 TAAATACCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
96 14 0.19
97 11 0.15
98 22 0.30
99 2 0.03
100 24 0.33
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (97 bp):
ATATATATTTAAATTATATATAAATTATTATGAAATTAATTTGGATAACTATAATTTTTAAATAC
TTTTATTTAATTGAGATTTTAAAAAGTAAAAG
Found at i:15852790 original size:15 final size:15
Alignment explanation
Indices: 15852770--15852801 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15852760 AGATAAAAGG
*
15852770 ATATATATTTAAATT
1 ATATATATGTAAATT
15852785 ATATATATGTAAATT
1 ATATATATGTAAATT
15852800 AT
1 AT
15852802 TAGAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATATATATGTAAATT
Found at i:15854179 original size:21 final size:21
Alignment explanation
Indices: 15854137--15854180 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
15854127 GCACATAAAG
* *
15854137 TATAATTTTACAAAATATTTT
1 TATAAATTTACAAAATAGTTT
15854158 TATAAATTTAC-AAATAAGTTT
1 TATAAATTTACAAAAT-AGTTT
15854179 TA
1 TA
15854181 ATCTACATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
TATAAATTTACAAAATAGTTT
Found at i:15854512 original size:2 final size:2
Alignment explanation
Indices: 15854464--15854494 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15854454 TATAATATCA
15854464 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15854495 CAAACAAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15856509 original size:2 final size:2
Alignment explanation
Indices: 15856502--15856547 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
15856492 ACTGATTGTG
15856502 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15856543 TA TA T
1 TA TA T
15856548 TTTGCTTTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15856697 original size:18 final size:18
Alignment explanation
Indices: 15856660--15856703 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15856650 TATGCTTTTT
* *
15856660 AAAATAATAATAAGATTA
1 AAAATAATAATAAAAATA
*
15856678 AAAATAGTAATAAAAATA
1 AAAATAATAATAAAAATA
*
15856696 AAATTAAT
1 AAAATAAT
15856704 TATTATATTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATAATAATAAAAATA
Found at i:15856741 original size:21 final size:22
Alignment explanation
Indices: 15856695--15856744 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
15856685 TAATAAAAAT
* *
15856695 AAAATTAATTATTATATTGATG
1 AAAATTAATTATTATAATGAAG
*
15856717 -AAATTGATTATTATAAT-AAG
1 AAAATTAATTATTATAATGAAG
15856737 AAAATTAA
1 AAAATTAA
15856745 AATTAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (22 bp):
AAAATTAATTATTATAATGAAG
Found at i:15857531 original size:17 final size:17
Alignment explanation
Indices: 15857509--15857542 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
15857499 ACGAATATAT
15857509 ATAATAACATAAT-TAAA
1 ATAATAA-ATAATATAAA
15857526 ATAATAAATAATATAAA
1 ATAATAAATAATATAAA
15857543 TTATACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAATAAATAATATAAA
Found at i:15858276 original size:21 final size:21
Alignment explanation
Indices: 15858252--15858329 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
15858242 TTTAAATCCC
*
15858252 TAAAATTCTAAAAAAAATTTA
1 TAAAATTCAAAAAAAAATTTA
15858273 TAAAATT-AGAAAAAAAATTTA
1 TAAAATTCA-AAAAAAAATTTA
* *
15858294 AAGAAATTCAAAACAAAAAGTCTA
1 TA-AAATTCAAAA-AAAAA-TTTA
*
15858318 -AAATTTCAAAAA
1 TAAAATTCAAAAA
15858330 TTTTGAAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
21 21 0.44
22 17 0.35
23 7 0.15
24 3 0.06
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (21 bp):
TAAAATTCAAAAAAAAATTTA
Found at i:15858406 original size:10 final size:10
Alignment explanation
Indices: 15858344--15858460 Score: 55
Period size: 10 Copynumber: 11.9 Consensus size: 10
15858334 GAAAATTCCA
15858344 AAAAATTTTGT
1 AAAAATTTT-T
* *
15858355 AAAAATTATA
1 AAAAATTTTT
* *
15858365 AAAAATCTAT
1 AAAAATTTTT
15858375 AAAAA---TT
1 AAAAATTTTT
**
15858382 AAAAAACTTT
1 AAAAATTTTT
*
15858392 GAAAATTTTT
1 AAAAATTTTT
*
15858402 AAAAA-TTCT
1 AAAAATTTTT
15858411 AACAAA-TTTT
1 AA-AAATTTTT
* *
15858421 CAAAATTTCT
1 AAAAATTTTT
*
15858431 AAAAATTTTA
1 AAAAATTTTT
**
15858441 AAATAATTTCA
1 AAA-AATTTTT
15858452 AAAAATTTT
1 AAAAATTTT
15858461 AGAATTTTTT
Statistics
Matches: 80, Mismatches: 20, Indels: 13
0.71 0.18 0.12
Matches are distributed among these distances:
7 6 0.08
9 8 0.10
10 49 0.61
11 17 0.21
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (10 bp):
AAAAATTTTT
Found at i:15858417 original size:20 final size:19
Alignment explanation
Indices: 15858393--15858460 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 19
15858383 AAAAACTTTG
15858393 AAAATTTTTAAAAATTCTA
1 AAAATTTTTAAAAATTCTA
* *
15858412 ACAAATTTTCAAAATTTCTA
1 A-AAATTTTTAAAAATTCTA
* *
15858432 AAAATTTTAAAATAATTTCAA
1 AAAATTTTTAAA-AA-TTCTA
15858453 AAAATTTT
1 AAAATTTT
15858461 AGAATTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 11 0.27
20 18 0.44
21 12 0.29
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATTTTTAAAAATTCTA
Found at i:15858420 original size:19 final size:18
Alignment explanation
Indices: 15858354--15858443 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
15858344 AAAAATTTTG
* *
15858354 TAAAAATTATAAAAAATC
1 TAAAAATTTTAAAAATTC
* *
15858372 TATAAAAATTAAAAAACTT-
1 TA-AAAATTTTAAAAA-TTC
*
15858391 TGAAAATTTTTAAAAATTC
1 T-AAAAATTTTAAAAATTC
*
15858410 TAACAAATTTTCAAAATTTC
1 TAA-AAATTTT-AAAAATTC
15858430 TAAAAATTTTAAAA
1 TAAAAATTTTAAAA
15858444 TAATTTCAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
18 10 0.18
19 35 0.61
20 12 0.21
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.36
Consensus pattern (18 bp):
TAAAAATTTTAAAAATTC
Found at i:15858433 original size:29 final size:29
Alignment explanation
Indices: 15858393--15858454 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
15858383 AAAAACTTTG
* *
15858393 AAAATTTTTAAAAATTCTAACAA-ATTTTC
1 AAAATTTCTAAAAATTCTAA-AATAATTTC
*
15858422 AAAATTTCTAAAAATTTTAAAATAATTTC
1 AAAATTTCTAAAAATTCTAAAATAATTTC
15858451 AAAA
1 AAAA
15858455 AATTTTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAATTTCTAAAAATTCTAAAATAATTTC
Found at i:15858619 original size:10 final size:9
Alignment explanation
Indices: 15858582--15858624 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
15858572 AATTTATGAA
15858582 AAAAATTTT
1 AAAAATTTT
* *
15858591 ATAACTTTT
1 AAAAATTTT
15858600 AGAAAATTTT
1 A-AAAATTTT
15858610 AAAAATTTTT
1 AAAAA-TTTT
15858620 AAAAA
1 AAAAA
15858625 AATATTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 12 0.43
10 16 0.57
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (9 bp):
AAAAATTTT
Found at i:15858650 original size:10 final size:9
Alignment explanation
Indices: 15858633--15858660 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
15858623 AAAATATTTG
15858633 AATTTTTTT
1 AATTTTTTT
15858642 AATTTTTTT
1 AATTTTTTT
15858651 AATTTTTTT
1 AATTTTTTT
15858660 A
1 A
15858661 TACTAATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (9 bp):
AATTTTTTT
Found at i:15858841 original size:26 final size:26
Alignment explanation
Indices: 15858789--15858861 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
15858779 TAACAAATTT
*
15858789 AAAAATTTAAATACAAATATGATAAA
1 AAAAATTTAAATACAAATATGACAAA
* *
15858815 AAAAATTTAGATA-ATAATGTGACAAA
1 AAAAATTTAAATACA-AATATGACAAA
* *
15858841 AAATA-TAAAATACTAAATATG
1 AAAAATTTAAATAC-AAATATG
15858862 TATTTAATCT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
25 6 0.16
26 30 0.81
27 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAAATTTAAATACAAATATGACAAA
Found at i:15859273 original size:63 final size:64
Alignment explanation
Indices: 15859120--15859275 Score: 174
Period size: 62 Copynumber: 2.5 Consensus size: 64
15859110 ATTTAAGATA
* * * * * * * *
15859120 ATTTTTTATAAAAAAAAAAGTCTTAAATAATCTTCTTTAAAAAAATGTAAAAGATTATTTATGGT
1 ATTTTTGAT-AAAAAAAATGCCTTAAATAATCTCCTTTAAAAAAATATAAAAGATGATTTATAGC
* * * *
15859185 ATTTTTGGT--CAAAAATACCTTAAATAATCTCCTTTAAAAAAATATTAAAGATGATTTA-AGC
1 ATTTTTGATAAAAAAAATGCCTTAAATAATCTCCTTTAAAAAAATATAAAAGATGATTTATAGC
15859246 ATTTTTGATAAAAAAAATGCCTTAAATAAT
1 ATTTTTGATAAAAAAAATGCCTTAAATAAT
15859276 ATGTTTTAAG
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
61 9 0.12
62 41 0.55
63 17 0.23
65 7 0.09
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.38
Consensus pattern (64 bp):
ATTTTTGATAAAAAAAATGCCTTAAATAATCTCCTTTAAAAAAATATAAAAGATGATTTATAGC
Found at i:15862370 original size:127 final size:126
Alignment explanation
Indices: 15862212--15862454 Score: 348
Period size: 127 Copynumber: 1.9 Consensus size: 126
15862202 ATAGATATCT
*
15862212 AAATTATTAAAAAACTAATTTTAAAAAATAAAAAG-ATATATATTTAAATTATATATTTAATTAT
1 AAATTATTAAAAAACTAATTTTAAAAAATAAAAAGAATATATATTTAAATTATATA-TAAATTAT
*
15862276 TA-AAAATTAATTTTGGATAACTAATAAT-TTTTTAATATGTTTATTTATTTGATAAATACCATA
65 TAGAAAATTAATTTTGGATAACT--T-ATGTTTTAAATATGTTTATTTATTTGATAAATACCATA
* * * * *
15862339 AAATTATTAATAAATTAGTTTTAGAAGATAAAAAGATATATATATTTAAATTATATATAAATTAT
1 AAATTATTAAAAAACTAATTTTAAAAAATAAAAAGA-ATATATATTTAAATTATATATAAATTAT
*
15862404 TAGAAAATTAATTTTGGATAACTTATGTTTTAAATATTTTTATTTATTTGA
65 TAGAAAATTAATTTTGGATAACTTATGTTTTAAATATGTTTATTTATTTGA
15862455 GATTTTAAAA
Statistics
Matches: 104, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
126 2 0.02
127 53 0.51
128 9 0.09
129 40 0.38
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (126 bp):
AAATTATTAAAAAACTAATTTTAAAAAATAAAAAGAATATATATTTAAATTATATATAAATTATT
AGAAAATTAATTTTGGATAACTTATGTTTTAAATATGTTTATTTATTTGATAAATACCATA
Found at i:15862515 original size:99 final size:98
Alignment explanation
Indices: 15862376--15862555 Score: 267
Period size: 99 Copynumber: 1.8 Consensus size: 98
15862366 ATAAAAAGAT
15862376 ATATATATTTAAATTATATATAAATTATTAGAAAATTAATTTTGGATAACT-T-ATGTTTTAAAT
1 ATATATATTTAAATTATATATAAATTATTAGAAAATTAATTTTGGATAACTATAAT-TTTTAAAT
* *
15862439 ATTTTTATTTATTTGAGATTTTAAAAAGTAAAAG
65 ACTTTTATTTAATTGAGATTTTAAAAAGTAAAAG
*
15862473 ATATATATTTCAATTAGATATATAAATTATTATG-AAATTAATTTTGGATAACTAATAATTTTTA
1 ATATATATTTAAATT--ATATATAAATTATTA-GAAAATTAATTTTGGATAACT-ATAATTTTTA
15862537 AATACTTTTATTTAATTGA
62 AATACTTTTATTTAATTGA
15862556 TAAATACCAT
Statistics
Matches: 74, Mismatches: 3, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
97 14 0.19
99 34 0.46
100 1 0.01
101 23 0.31
102 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (98 bp):
ATATATATTTAAATTATATATAAATTATTAGAAAATTAATTTTGGATAACTATAATTTTTAAATA
CTTTTATTTAATTGAGATTTTAAAAAGTAAAAG
Found at i:15863398 original size:22 final size:21
Alignment explanation
Indices: 15863348--15863398 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
15863338 AGTTCGATAT
*
15863348 TTTTAAATTTTAAAAGATGTA
1 TTTTAAATTTTAAAAAATGTA
*
15863369 TATCTAAATTATTAAAAAAT-TAA
1 T-TTTAAATT-TTAAAAAATGT-A
15863392 TTTTAAA
1 TTTTAAA
15863399 AGATAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 1 0.04
22 13 0.54
23 10 0.42
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (21 bp):
TTTTAAATTTTAAAAAATGTA
Found at i:15863558 original size:15 final size:15
Alignment explanation
Indices: 15863538--15863569 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15863528 AGATAAAAGG
*
15863538 ATATATATTTAAATT
1 ATATATATGTAAATT
15863553 ATATATATGTAAATT
1 ATATATATGTAAATT
15863568 AT
1 AT
15863570 TAGAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
ATATATATGTAAATT
Found at i:15867670 original size:28 final size:29
Alignment explanation
Indices: 15867638--15867693 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
15867628 TAATAAAATA
* *
15867638 TTTAATGTGATATTTGAATT-TAAATTTT
1 TTTAATATAATATTTGAATTATAAATTTT
*
15867666 TTTAATATAATGTTTGAATTATAAATTT
1 TTTAATATAATATTTGAATTATAAATTT
15867694 ATTAATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (29 bp):
TTTAATATAATATTTGAATTATAAATTTT
Found at i:15867698 original size:28 final size:27
Alignment explanation
Indices: 15867650--15867703 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
15867640 TAATGTGATA
*
15867650 TTTGAATTTAAATTTTTTTAATATAATG
1 TTTGAATTTAAATTTTATTAAT-TAATG
15867678 TTTGAATTATAAA-TTTATTAATTAAT
1 TTTGAATT-TAAATTTTATTAATTAAT
15867704 TATTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 16 0.67
29 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (27 bp):
TTTGAATTTAAATTTTATTAATTAATG
Found at i:15868493 original size:20 final size:18
Alignment explanation
Indices: 15868446--15868484 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15868436 ATATTTATTT
15868446 ATTTAA-AATTTTTTAAC
1 ATTTAATAATTTTTTAAC
15868463 ATTTAATAATTATTTTAA-
1 ATTTAATAATT-TTTTAAC
15868481 ATTT
1 ATTT
15868485 CAATTAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 8 0.40
19 6 0.30
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTAATAATTTTTTAAC
Found at i:15869538 original size:29 final size:30
Alignment explanation
Indices: 15869492--15869549 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
15869482 ATTTTAAATA
*
15869492 TTTTAAATTTATATTTAAATAAAATTTTAC
1 TTTTAAATTTATACTTAAATAAAATTTTAC
* *
15869522 TTTT-AATTTGTACTTAAATAAATTTTTA
1 TTTTAAATTTATACTTAAATAAAATTTTA
15869550 ACATAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (30 bp):
TTTTAAATTTATACTTAAATAAAATTTTAC
Found at i:15869668 original size:43 final size:43
Alignment explanation
Indices: 15869614--15869700 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
15869604 TAAAAAGTTC
*
15869614 AGAAAACTTTTATTATCTTTGAATTATTAAATAGTAAGCATAT
1 AGAAAACTTTTATTATATTTGAATTATTAAATAGTAAGCATAT
* * *
15869657 AGAAAATTTTTATTATATTTGATTTATTAAATCGTAAGCATAT
1 AGAAAACTTTTATTATATTTGAATTATTAAATAGTAAGCATAT
15869700 A
1 A
15869701 AAATATACAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (43 bp):
AGAAAACTTTTATTATATTTGAATTATTAAATAGTAAGCATAT
Found at i:15873729 original size:19 final size:18
Alignment explanation
Indices: 15873705--15873741 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
15873695 GTCCATTAGC
15873705 ATGTTTTTCTTTTTATTAA
1 ATGTTTTT-TTTTTATTAA
*
15873724 ATGTTTTTTTTTTTTTAA
1 ATGTTTTTTTTTTATTAA
15873742 TTCAAGTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (18 bp):
ATGTTTTTTTTTTATTAA
Found at i:15881154 original size:2 final size:2
Alignment explanation
Indices: 15881143--15881174 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
15881133 CATAGTCATC
15881143 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15881175 AAAGAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15882298 original size:22 final size:20
Alignment explanation
Indices: 15882260--15882299 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
15882250 ATATAATTAA
*
15882260 ATAAAAAATTAATAATATGT
1 ATAAAAAATTAAAAATATGT
15882280 ATAAAAATTATTAAAAATAT
1 ATAAAAA--ATTAAAAATAT
15882300 CTTTTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
ATAAAAAATTAAAAATATGT
Found at i:15882385 original size:10 final size:9
Alignment explanation
Indices: 15882366--15882402 Score: 65
Period size: 9 Copynumber: 4.0 Consensus size: 9
15882356 AAAAAATATA
15882366 TTAAAATTT
1 TTAAAATTT
15882375 TTAAAATTT
1 TTAAAATTT
15882384 TTAAAATTTT
1 TTAAAA-TTT
15882394 TTAAAATTT
1 TTAAAATTT
15882403 ACATGTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 18 0.67
10 9 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TTAAAATTT
Found at i:15885759 original size:15 final size:15
Alignment explanation
Indices: 15885735--15885779 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
15885725 CATTTCCATG
*
15885735 GATG-AAATGAGAAT
1 GATGCAAATGATAAT
15885749 GATGCAAATGATAAT
1 GATGCAAATGATAAT
15885764 GATGCAAATGATAAT
1 GATGCAAATGATAAT
15885779 G
1 G
15885780 TTAAAACATG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 4 0.14
15 25 0.86
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.24
Consensus pattern (15 bp):
GATGCAAATGATAAT
Found at i:15887338 original size:27 final size:26
Alignment explanation
Indices: 15887293--15887344 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
15887283 CCAAATTTAG
15887293 AAAAAATTTATCACCTAAAAATTTCTT
1 AAAAAATTTATCACCT-AAAATTTCTT
**
15887320 AAAAAATTTATCATTTAAAATTTCT
1 AAAAAATTTATCACCTAAAATTTCT
15887345 AAGAATCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (26 bp):
AAAAAATTTATCACCTAAAATTTCTT
Found at i:15887532 original size:20 final size:21
Alignment explanation
Indices: 15887503--15887549 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
15887493 TTTTATAAAC
* *
15887503 ATTTACCATTTGA-AATTAAT
1 ATTTATCATTGGATAATTAAT
15887523 ATTTATCATTGGATAATTAAT
1 ATTTATCATTGGATAATTAAT
15887544 ATTTAT
1 ATTTAT
15887550 TCTCAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (21 bp):
ATTTATCATTGGATAATTAAT
Found at i:15887624 original size:15 final size:14
Alignment explanation
Indices: 15887603--15887656 Score: 63
Period size: 16 Copynumber: 3.5 Consensus size: 14
15887593 ATCATGAAGG
15887603 AAAAAAATACTAAA
1 AAAAAAATACTAAA
15887617 AGAAAAAATTACTAAA
1 A-AAAAAA-TACTAAA
15887633 TAAAAAAATACCTAAGA
1 -AAAAAAATA-CTAA-A
15887650 AAAAAAA
1 AAAAAAA
15887657 AACGGCTCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.03
15 8 0.23
16 24 0.69
17 2 0.06
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.15
Consensus pattern (14 bp):
AAAAAAATACTAAA
Found at i:15889790 original size:21 final size:20
Alignment explanation
Indices: 15889765--15889804 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
15889755 TTTTTTCCCT
*
15889765 TTTTTTTTCATTTTCATTTTCA
1 TTTTCTTTC-TTTTC-TTTTCA
15889787 TTTTCTTTCTTTTCTTTT
1 TTTTCTTTCTTTTCTTTT
15889805 ATCGATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTCTTTCTTTTCTTTTCA
Found at i:15889908 original size:30 final size:30
Alignment explanation
Indices: 15889861--15889917 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
15889851 TAAACTTTTT
15889861 TTTTTTCTTTCCTTTTCTTCC-TCTCTTATC
1 TTTTTTCTTTCCTTTTC-TCCTTCTCTTATC
15889891 TTTTTT-TTTCCTCTTTCTCCTTCTCTT
1 TTTTTTCTTTCCT-TTTCTCCTTCTCTT
15889918 TCTGCGATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (30 bp):
TTTTTTCTTTCCTTTTCTCCTTCTCTTATC
Found at i:15891645 original size:6 final size:6
Alignment explanation
Indices: 15891634--15891674 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
15891624 AAATGAAACA
* *
15891634 AAAAAT AAAAAT AAAAAT -AAAAT -AAAAT AATAAT AATAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
15891675 GTAAAAGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
5 10 0.30
6 23 0.70
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:15891797 original size:26 final size:26
Alignment explanation
Indices: 15891754--15891804 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15891744 GATGAAAGTG
**
15891754 GGCTTAATTGGGTCCAGACAAAAATT
1 GGCTTAATTGAATCCAGACAAAAATT
* *
15891780 GGCTTAATTGAATTCAGACCAAAAT
1 GGCTTAATTGAATCCAGACAAAAAT
15891805 GGATGTCTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (26 bp):
GGCTTAATTGAATCCAGACAAAAATT
Found at i:15892200 original size:17 final size:18
Alignment explanation
Indices: 15892174--15892207 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
15892164 TGTTTTTTGT
15892174 TTTTATTTTATTTTTTAA
1 TTTTATTTTATTTTTTAA
15892192 TTTTA-TTTATTTTTTA
1 TTTTATTTTATTTTTTA
15892208 TATATAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTATTTTATTTTTTAA
Found at i:15892644 original size:17 final size:17
Alignment explanation
Indices: 15892603--15892644 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
15892593 AATTTTTTAA
15892603 AAGTTTTTTTGCAATTTT
1 AAGTTTTTTT-CAATTTT
*
15892621 AA-TTTTTTTTAATTTT
1 AAGTTTTTTTCAATTTT
15892637 GAAGTTTT
1 -AAGTTTT
15892645 GGATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.29
17 9 0.43
18 6 0.29
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.64
Consensus pattern (17 bp):
AAGTTTTTTTCAATTTT
Found at i:15892773 original size:46 final size:44
Alignment explanation
Indices: 15892659--15892774 Score: 108
Period size: 46 Copynumber: 2.6 Consensus size: 44
15892649 TTTTTTCTTG
* * * * *
15892659 AAAAATTCCTCTTATTAAAGGCTTCAAGCTTTTGAAATAGATTT
1 AAAAGTTCATCTTATTAAAGGCTCCAAACTTTTGAAATAGATCT
* * * * *
15892703 AAAAGCTCTTCTCATTAGACGCTCCACAACTTTTGAAAATCA-ATCT
1 AAAAGTTCATCTTATTAAAGGCTCCA-AACTTTTG-AAAT-AGATCT
15892749 AAAAGTTCATCTTATTAAAGGCTCCA
1 AAAAGTTCATCTTATTAAAGGCTCCA
15892775 TAGCTCAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
44 19 0.35
45 7 0.13
46 28 0.51
47 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (44 bp):
AAAAGTTCATCTTATTAAAGGCTCCAAACTTTTGAAATAGATCT
Found at i:15892927 original size:50 final size:49
Alignment explanation
Indices: 15892869--15893285 Score: 279
Period size: 50 Copynumber: 8.3 Consensus size: 49
15892859 ATAAAGGTTG
* *
15892869 AACAACTTTAAAAATCTTATCTTGGGAAAAGCTCCTTTAAACAAAACTTT
1 AACAACTTTAAAAATCTTATCTTGGAAAAAGCTCCTTTAAACAAAAC-TC
* * * * **
15892919 AACTACTTTAAAAATTTTATCTTGAAAAAAGCTCATTTAAACAAATGTTC
1 AACAACTTTAAAAATCTTATCTTGGAAAAAGCTCCTTTAAACAAA-ACTC
* * * *
15892969 AATAACTTTAAAAAT-TTCATCTT-GAAAATAACTCTTTTAAACAAAAGCTT
1 AACAACTTTAAAAATCTT-ATCTTGGAAAA-AGCTCCTTTAAACAAAA-CTC
* ** * * * * **
15893019 GATGACTTTAAAAATCTTAT-TATGAAAAAAGTTCATTTAAAGAAATGGTC
1 AACAACTTTAAAAATCTTATCT-TGGAAAAAGCTCCTTTAAACAAA-ACTC
* * * * * *
15893069 GATAACTTTAAAAATCTCAT-TTTGAAAAA-CTTCTTTAAATAAAGACTC
1 AACAACTTTAAAAATCTTATCTTGGAAAAAGCTCCTTTAAACAAA-ACTC
* * * * ** *
15893117 AACAACTTAAAAAATCTCATCTTAGAAAAAACTTTTTTAAACAAAAGCTT
1 AACAACTTTAAAAATCTTATCTTGGAAAAAGCTCCTTTAAACAAAA-CTC
* * * *
15893167 AACAACTTTAAAAATTTTATCTTGGGAAAA-CTTCTTTAAATAAAAGCTC
1 AACAACTTTAAAAATCTTATCTTGGAAAAAGCTCCTTTAAACAAAA-CTC
* * * *
15893216 AACAATTTTAAAAATCTTATCTTGGGAAAAGGCTTCTTTTAAAAAAAAAGCTC
1 AACAACTTTAAAAATCTTATCTT-GGAAAAAGC-TCCTTT-AAACAAAA-CTC
*
15893269 GACAACTTTAAAAATCT
1 AACAACTTTAAAAATCT
15893286 AAAAAAAAAA
Statistics
Matches: 291, Mismatches: 61, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
48 29 0.10
49 59 0.20
50 166 0.57
51 7 0.02
52 4 0.01
53 26 0.09
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (49 bp):
AACAACTTTAAAAATCTTATCTTGGAAAAAGCTCCTTTAAACAAAACTC
Done.