Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168382.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_60, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 143073
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 2 of 4
Found at i:43566 original size:17 final size:17
Alignment explanation
Indices: 43538--43579 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
43528 TATTTTATTT
*
43538 ATATTAATAAAT-AATTA
1 ATATT-ATAAATGAATAA
43555 ATAATTATAAATGAATAA
1 AT-ATTATAAATGAATAA
43573 ATATTAT
1 ATATTAT
43580 TGATTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATTATAAATGAATAA
Found at i:43649 original size:22 final size:22
Alignment explanation
Indices: 43619--43667 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
43609 AATTTTTTGA
43619 AATTATAATACTTAA-ATTAAAT
1 AATTATAAT-CTTAATATTAAAT
* *
43641 AATTTTAATTTTAATATTAAAT
1 AATTATAATCTTAATATTAAAT
*
43663 TATTA
1 AATTA
43668 AAATGATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATCTTAATATTAAAT
Found at i:43744 original size:14 final size:15
Alignment explanation
Indices: 43720--43748 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
43710 TAATAACTAT
43720 ATATCATAATAAAAA
1 ATATCATAATAAAAA
43735 ATAT-ATAATAAAAA
1 ATATCATAATAAAAA
43749 TTAATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATCATAATAAAAA
Found at i:44255 original size:181 final size:181
Alignment explanation
Indices: 43983--44416 Score: 439
Period size: 181 Copynumber: 2.4 Consensus size: 181
43973 AATAAGTAGG
* * * * * * *
43983 AGATTTAAAAAATAAATTTATTTATCGAATCAGTTTAAATAGTTATGACTATTTGAACAATTATA
1 AGATTTAAAAAATAAATTTATTTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATA
* * *
44048 TATTTCCAATTGTTATAACCTTTTGTTTTGCCATAAAACAATTATTTATCTTCATACAAGCTTAT
66 TATTTCAAATCGTTATAACCTTTTGTTTTGCCATAAAACAAATATTTATCTTCATACAAGCTTAT
44113 TCGAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAATTGAT
131 TCGAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAATTGAT
* * * * *
44164 AGATTTAAAAAATAAATTTGTTTACCAAACCAATTCAACTAGTTAAGGCTATATGAATAATTATC
1 AGATTTAAAAAATAAATTTATTTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATA
* * * * * ** * *
44229 TATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATGTAAGTTTGT
66 TATTTCAAATCGTTATAACCTTTTGTTTTGCCATAAAACAAATATTTATCTTCATACAAGCTTAT
* * * * * *
44294 TCGAAATAAAATAATATTAATTTATTGATATT-TCAAAAATTAATAA--G--
131 TCGAAATAAAATAATACTAATCTAGTAATATTAT-GAAATTTAATAATTGAT
* * ** * * * * * *
44341 AGATTTAATAAATAAATCTATTTACCATTCTAGTTCAATTAGTTATA-ACAATTTGAACATTTAT
1 AGATTTAAAAAATAAATTTATTTACCAAACCAATTCAAATAGTTA-AGACTATATGAACAATTAT
*
44405 CTATTTCAAATC
65 ATATTTCAAATC
44417 TTACTAAATT
Statistics
Matches: 208, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
177 61 0.29
178 1 0.00
179 1 0.00
180 1 0.00
181 144 0.69
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
AGATTTAAAAAATAAATTTATTTACCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATA
TATTTCAAATCGTTATAACCTTTTGTTTTGCCATAAAACAAATATTTATCTTCATACAAGCTTAT
TCGAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAATTGAT
Found at i:45385 original size:13 final size:13
Alignment explanation
Indices: 45367--45400 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
45357 ATTAAATGAA
45367 TATAATATTAAAT
1 TATAATATTAAAT
*
45380 TATAATATTTAAT
1 TATAATATTAAAT
45393 TCATAATA
1 T-ATAATA
45401 CTAATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TATAATATTAAAT
Found at i:47660 original size:11 final size:11
Alignment explanation
Indices: 47629--47686 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
47619 ATTATTATTA
*
47629 TAATAATTACT
1 TAATAATTAAT
47640 ATATATAATTAAT
1 -TA-ATAATTAAT
47653 TAATAATTAAT
1 TAATAATTAAT
* *
47664 TAATTATAAAT
1 TAATAATTAAT
* *
47675 TATTAATAAAT
1 TAATAATTAAT
47686 T
1 T
47687 TAAAAAAGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
11 28 0.70
12 4 0.10
13 8 0.20
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (11 bp):
TAATAATTAAT
Found at i:48625 original size:17 final size:18
Alignment explanation
Indices: 48603--48639 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
48593 AAAGTTTAAA
48603 AAATATTTT-ATTATTAT
1 AAATATTTTAATTATTAT
48620 AAATATTTTAATTATTAT
1 AAATATTTTAATTATTAT
48638 AA
1 AA
48640 TTATAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AAATATTTTAATTATTAT
Found at i:49585 original size:32 final size:32
Alignment explanation
Indices: 49524--49585 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
49514 AATATTTTAA
*
49524 TTATTTTAAATTAAATTAAAATTATTTAATTT
1 TTATTTTAAATTAAATTAAAATTAATTAATTT
* *
49556 TTATTTTAATATT-AATTAGATTTAATTAAT
1 TTATTTTAA-ATTAAATTAAAATTAATTAAT
49586 AAATATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 23 0.88
33 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (32 bp):
TTATTTTAAATTAAATTAAAATTAATTAATTT
Found at i:49684 original size:13 final size:12
Alignment explanation
Indices: 49635--49687 Score: 70
Period size: 12 Copynumber: 4.3 Consensus size: 12
49625 GAATTAGAGT
*
49635 AATAATTATAAA
1 AATAATTATTAA
*
49647 AATAATTATTTA
1 AATAATTATTAA
49659 AATAATTATTAA
1 AATAATTATTAA
*
49671 AATCAATAATTAA
1 AAT-AATTATTAA
49684 AATA
1 AATA
49688 TTTTGAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
12 25 0.69
13 11 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (12 bp):
AATAATTATTAA
Found at i:50614 original size:17 final size:18
Alignment explanation
Indices: 50572--50620 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
50562 TTTAATAATT
* *
50572 ATTATTATA-AATAATAA
1 ATTATTATATATTTATAA
50589 ATTATTATA-ATTTATAA
1 ATTATTATATATTTATAA
50606 ATT-TATATATATTTA
1 ATTAT-TATATATTTA
50621 ATATATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 22 0.79
18 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATTATATATTTATAA
Found at i:50620 original size:18 final size:17
Alignment explanation
Indices: 50572--50608 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
50562 TTTAATAATT
* *
50572 ATTATTATAAATAATAA
1 ATTATTATAATTTATAA
50589 ATTATTATAATTTATAA
1 ATTATTATAATTTATAA
50606 ATT
1 ATT
50609 TATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATAATTTATAA
Found at i:50771 original size:10 final size:10
Alignment explanation
Indices: 50734--50771 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
50724 TTATTTTAAT
*
50734 ATAATAATAA
1 ATAATAATTA
50744 ATAATAATTA
1 ATAATAATTA
*
50754 CT-ATAATTA
1 ATAATAATTA
50763 ATAATAATT
1 ATAATAATT
50772 TATTAATAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAATAATTA
Found at i:51033 original size:26 final size:26
Alignment explanation
Indices: 50985--51034 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
50975 AGTATAATTA
* *
50985 TTTAAAATTTATTTAAATTTTAAAAT
1 TTTAAAATTTATTGAAATGTTAAAAT
51011 TTTAAAATTT-TTGAAATAGTTAAA
1 TTTAAAATTTATTGAAAT-GTTAAA
51035 TTTATTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (26 bp):
TTTAAAATTTATTGAAATGTTAAAAT
Found at i:51122 original size:13 final size:13
Alignment explanation
Indices: 51098--51131 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
51088 ATATGTTATT
51098 ATTTAG-TAAATA
1 ATTTAGCTAAATA
51110 ATTTAGCTAAATA
1 ATTTAGCTAAATA
51123 A-TTAGCTAA
1 ATTTAGCTAA
51132 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (13 bp):
ATTTAGCTAAATA
Found at i:51440 original size:18 final size:20
Alignment explanation
Indices: 51408--51445 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
51398 TATAATAATA
51408 GATATAAATAATAA-GCTAT
1 GATATAAATAATAAGGCTAT
*
51427 GATA-AAATAGTAAGGCTAT
1 GATATAAATAATAAGGCTAT
51446 TTTTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29
Consensus pattern (20 bp):
GATATAAATAATAAGGCTAT
Found at i:52771 original size:19 final size:18
Alignment explanation
Indices: 52706--52771 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
52696 TAATAATATT
*
52706 ATTATTAATTAATATTAA
1 ATTATAAATTAATATTAA
* *
52724 ATTTATGAATATTGATTTTAA
1 A-TTAT-AA-ATTAATATTAA
*
52745 TTTA-AAATTAATAATTAA
1 ATTATAAATTAAT-ATTAA
52763 ATTATAAAT
1 ATTATAAAT
52772 AGTATAATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
17 5 0.14
18 10 0.28
19 8 0.22
20 4 0.11
21 9 0.25
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (18 bp):
ATTATAAATTAATATTAA
Found at i:52942 original size:10 final size:10
Alignment explanation
Indices: 52919--52995 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
52909 CCCTTTTATT
52919 TTAATAATTTA
1 TTAATAA-TTA
*
52930 TTAATAGTTA
1 TTAATAATTA
52940 TTAATAATTA
1 TTAATAATTA
52950 TT-ATCAGA-TA
1 TTAAT-A-ATTA
52960 -TAATAATTAA
1 TTAATAATT-A
52970 TT-ATAATTA
1 TTAATAATTA
52979 --AAT-A-TA
1 TTAATAATTA
52985 TTAATAATTA
1 TTAATAATTA
52995 T
1 T
52996 AACCTAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 23
0.68 0.03 0.29
Matches are distributed among these distances:
6 2 0.04
7 1 0.02
8 6 0.11
9 7 0.13
10 29 0.55
11 8 0.15
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (10 bp):
TTAATAATTA
Found at i:53231 original size:25 final size:23
Alignment explanation
Indices: 53202--53263 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 23
53192 TATTGAAATA
53202 ATAATTATTTAATAATAATTATATT
1 ATAATTATTTAATAATAA-TA-ATT
*
53227 ATAATTATTTAA-AATTATAATT
1 ATAATTATTTAATAATAATAATT
53249 ATAATATAGTTTAAT
1 ATAAT-TA-TTTAAT
53264 TGAATTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 8 0.24
23 4 0.12
24 9 0.27
25 12 0.36
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
ATAATTATTTAATAATAATAATT
Found at i:53269 original size:27 final size:21
Alignment explanation
Indices: 53218--53262 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
53208 ATTTAATAAT
53218 AATTATATTATAATTATTTAA
1 AATTATATTATAATTATTTAA
53239 AATTATAATTATAATATAGTTTAA
1 AATTAT-ATTATAAT-TA-TTTAA
53263 TTGAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 8 0.38
23 2 0.10
24 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
AATTATATTATAATTATTTAA
Found at i:53483 original size:16 final size:15
Alignment explanation
Indices: 53453--53486 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
53443 TATTTATTTC
*
53453 AATAATAAGAATTAT
1 AATAATAACAATTAT
53468 AATAATAAACAATTAT
1 AATAAT-AACAATTAT
53484 AAT
1 AAT
53487 TATTAGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAATAACAATTAT
Found at i:53545 original size:12 final size:13
Alignment explanation
Indices: 53528--53590 Score: 58
Period size: 12 Copynumber: 4.9 Consensus size: 13
53518 TAGTATAATA
53528 TTATAATAA-ATT
1 TTATAATAATATT
53540 TTATAATAATATT
1 TTATAATAATATT
* *
53553 TTATGATAATA-A
1 TTATAATAATATT
* * *
53565 TTATAGTATTATA
1 TTATAATAATATT
53578 TTATTAATAATAT
1 TTA-TAATAATAT
53591 AAATTATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 17 0.41
13 17 0.41
14 7 0.17
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
TTATAATAATATT
Found at i:53656 original size:9 final size:8
Alignment explanation
Indices: 53479--53661 Score: 69
Period size: 8 Copynumber: 22.1 Consensus size: 8
53469 ATAATAAACA
53479 ATTATAATT
1 ATTATAA-T
53488 ATTAGTAAT
1 ATTA-TAAT
53497 AATT-TAAT
1 -ATTATAAT
53505 A--A-AAT
1 ATTATAAT
*
53510 AGTTATAGT
1 A-TTATAAT
*
53519 AGTATAAT
1 ATTATAAT
53527 ATTATAAT
1 ATTATAAT
53535 AAATTTTATAAT
1 --A--TTATAAT
* **
53547 AATATTTT
1 ATTATAAT
*
53555 ATGATAAT
1 ATTATAAT
*
53563 AATTATAGT
1 -ATTATAAT
*
53572 ATTATATT
1 ATTATAAT
53580 A-T-TAAT
1 ATTATAAT
*
53586 AATATAA-
1 ATTATAAT
53593 ATTATAAT
1 ATTATAAT
53601 AATTATAAT
1 -ATTATAAT
53610 ATTATTTAAT
1 ATTA--TAAT
*
53620 TTTATTGAAT
1 ATTA-T-AAT
53630 ATTATAAT
1 ATTATAAT
53638 A-TATAA-
1 ATTATAAT
53644 ATTATAAAT
1 ATTAT-AAT
*
53653 ATTAAAAT
1 ATTATAAT
53661 A
1 A
53662 ATTACTACAA
Statistics
Matches: 133, Mismatches: 19, Indels: 45
0.68 0.10 0.23
Matches are distributed among these distances:
5 4 0.03
6 5 0.04
7 17 0.13
8 50 0.38
9 29 0.22
10 21 0.16
12 7 0.05
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (8 bp):
ATTATAAT
Found at i:53866 original size:18 final size:19
Alignment explanation
Indices: 53833--53868 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
53823 AGTTAATTGA
*
53833 CTTGTTCTAATAAATTAAG
1 CTTGTACTAATAAATTAAG
53852 CTTGTACTAAT-AATTAA
1 CTTGTACTAATAAATTAA
53869 TAGTATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (19 bp):
CTTGTACTAATAAATTAAG
Found at i:53960 original size:26 final size:25
Alignment explanation
Indices: 53931--54008 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
53921 TTAAATCTCT
*
53931 ATAAATAATATTATTTATATTATATG
1 ATAAATAATA-TATTTATATTATATA
* * * *
53957 ATAATTATTATATATATACTTAGATA
1 ATAAATAATATATTTATA-TTATATA
53983 ATAAATAAGTAATATTTAT-TTATATA
1 ATAAATAA-T-ATATTTATATTATATA
54009 TTTATAGAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 7 0.17
26 25 0.62
27 1 0.03
28 7 0.17
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (25 bp):
ATAAATAATATATTTATATTATATA
Found at i:54836 original size:11 final size:11
Alignment explanation
Indices: 54805--54839 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
54795 ATTTAATAAT
*
54805 ATTAAAAATAA
1 ATTAAAATTAA
54816 ATTAATAATTAA
1 ATTAA-AATTAA
54828 ATTAAAATTAA
1 ATTAAAATTAA
54839 A
1 A
54840 ATCCTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATTAAAATTAA
Found at i:55528 original size:25 final size:24
Alignment explanation
Indices: 55487--55536 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
55477 ATTTAATTAA
55487 ATATTTTTAATAATTATTATTAAAT
1 ATATTTTTAATAATTA-TATTAAAT
* * *
55512 ATATTTTTACTAGTTATATTTAAT
1 ATATTTTTAATAATTATATTAAAT
55536 A
1 A
55537 CTATAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (24 bp):
ATATTTTTAATAATTATATTAAAT
Found at i:55561 original size:20 final size:20
Alignment explanation
Indices: 55538--55597 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
55528 TATTTAATAC
55538 TATAATATAATCTTTATATT
1 TATAATATAATCTTTATATT
* *
55558 TATAA-ATAGTCTATAATATTT
1 TATAATATAATCT-TTATA-TT
* *
55579 TATAATATTATATTTATAT
1 TATAATATAATCTTTATAT
55598 AATATTATTC
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
19 6 0.19
20 10 0.32
21 11 0.35
22 4 0.13
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (20 bp):
TATAATATAATCTTTATATT
Found at i:55606 original size:14 final size:15
Alignment explanation
Indices: 55573--55605 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
55563 ATAGTCTATA
55573 ATATTTTATAATATT
1 ATATTTTATAATATT
55588 ATATTTATATAATATT
1 ATATTT-TATAATATT
55604 AT
1 AT
55606 TCAAAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTTATAATATT
Found at i:56577 original size:14 final size:14
Alignment explanation
Indices: 56558--56587 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
56548 AATAATTAAG
*
56558 ATAATAATATATTT
1 ATAATAATATAATT
56572 ATAATAATATAATT
1 ATAATAATATAATT
56586 AT
1 AT
56588 TCAGTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATAATATAATT
Found at i:56745 original size:22 final size:22
Alignment explanation
Indices: 56713--56754 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
56703 CAGCTTGTAT
*
56713 TATTTTTAATT-ATCTATTAATA
1 TATTTTAAATTGAT-TATTAATA
56735 TATTTTAAATTGATTATTAA
1 TATTTTAAATTGATTATTAA
56755 AATTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTTTAAATTGATTATTAATA
Found at i:56995 original size:21 final size:20
Alignment explanation
Indices: 56965--57022 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
56955 ATTTACTATA
* *
56965 ATATAGATAATTATATATTAT
1 ATATAAATAATTATA-AATAT
56986 ATATAAATAAATTATAAATAT
1 ATATAAAT-AATTATAAATAT
*
57007 ATTTTAAATAA-TATAA
1 A-TATAAATAATTATAA
57023 TAACATTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 5 0.16
21 14 0.44
22 13 0.41
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATATAAATAATTATAAATAT
Found at i:57001 original size:11 final size:11
Alignment explanation
Indices: 56987--57038 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
56977 ATATATTATA
56987 TATAAATAAAT
1 TATAAATAAAT
*
56998 TATAAATATAT
1 TATAAATAAAT
*
57009 TTTAAATAATAT
1 TATAAATAA-AT
*
57021 AATAACATTAAAT
1 TATAA-A-TAAAT
57034 TATAA
1 TATAA
57039 TTATATAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
11 17 0.53
12 5 0.16
13 7 0.22
14 3 0.09
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (11 bp):
TATAAATAAAT
Found at i:57146 original size:34 final size:34
Alignment explanation
Indices: 57100--57165 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
57090 GTTTTATAAC
* *
57100 TAATATATAATTATATTATTAT-ATATCAAATTAT
1 TAATATAGAATTA-ATTAATATAATATCAAATTAT
*
57134 TAATATAGAATTAATTAATATAATATTAAATT
1 TAATATAGAATTAATTAATATAATATCAAATT
57166 CAAATATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (34 bp):
TAATATAGAATTAATTAATATAATATCAAATTAT
Found at i:57161 original size:15 final size:13
Alignment explanation
Indices: 57114--57195 Score: 53
Period size: 15 Copynumber: 5.9 Consensus size: 13
57104 ATATAATTAT
57114 ATTATTATATATCAA
1 ATTATTA-ATAT-AA
57129 ATTATTAATATAGA
1 ATTATTAATATA-A
57143 ATTAATTAATAT-A
1 ATT-ATTAATATAA
57156 A-TATTAA-ATTCAAA
1 ATTATTAATA-T--AA
*
57170 TATTATTAATATGA
1 -ATTATTAATATAA
*
57184 ATAATTAATATA
1 ATTATTAATATA
57196 TAATATAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 20
0.71 0.04 0.26
Matches are distributed among these distances:
10 1 0.02
11 6 0.11
12 1 0.02
13 13 0.24
14 10 0.18
15 16 0.29
16 7 0.13
17 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATTATTAATATAA
Found at i:57170 original size:40 final size:41
Alignment explanation
Indices: 57111--57195 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
57101 AATATATAAT
* *
57111 TATATTATTATATATC-AA-ATTATTAATATAGAATTAATTAA
1 TATAATATTAAATATCAAATATTATTAATAT-GAA-TAATTAA
57152 TATAATATTAAAT-TCAAATATTATTAATATGAATAATTAA
1 TATAATATTAAATATCAAATATTATTAATATGAATAATTAA
57192 TATA
1 TATA
57196 TAATATAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
40 13 0.32
41 16 0.40
42 11 0.28
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (41 bp):
TATAATATTAAATATCAAATATTATTAATATGAATAATTAA
Found at i:57692 original size:21 final size:21
Alignment explanation
Indices: 57668--57714 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
57658 ATGTTGTTAT
57668 TAATTAT-ATTAATTAAAAAAA
1 TAATTATAATT-ATTAAAAAAA
* *
57689 TAATTATAATTATTTAAATAA
1 TAATTATAATTATTAAAAAAA
57710 TAATT
1 TAATT
57715 TAAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATTATAATTATTAAAAAAA
Found at i:57720 original size:21 final size:21
Alignment explanation
Indices: 57687--57732 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
57677 TAATTAAAAA
57687 AATAATTATAA-TTATTTAAAT
1 AATAATTATAATTTATTT-AAT
57708 AATAATT-TAAATTTATTTAAT
1 AATAATTAT-AATTTATTTAAT
57729 AATA
1 AATA
57733 GAATAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAATTATAATTTATTTAAT
Found at i:57870 original size:8 final size:8
Alignment explanation
Indices: 57843--57875 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
57833 TATAAATACT
57843 ATATATTA
1 ATATATTA
*
57851 ATA-ATAA
1 ATATATTA
57858 ATATATTA
1 ATATATTA
57866 ATATATTA
1 ATATATTA
57874 AT
1 AT
57876 TAAATATATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
ATATATTA
Found at i:57879 original size:21 final size:22
Alignment explanation
Indices: 57843--57884 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
57833 TATAAATACT
57843 ATATATTAATAATAAATATATTA
1 ATATATTAAT-ATAAATATATTA
57866 ATATATTAAT-TAAATATAT
1 ATATATTAATATAAATATAT
57885 CAAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
23 10 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATATATTAATATAAATATATTA
Found at i:58160 original size:24 final size:23
Alignment explanation
Indices: 58111--58166 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
58101 ACTTATTACT
58111 TAATTTATAACTATTATAAATTTA
1 TAATTTATAACTATTATAAA-TTA
*
58135 TAATTTATAATTATATATTAAA-TA
1 TAATTTATAACTAT-TA-TAAATTA
*
58159 TAAATTAT
1 TAATTTAT
58167 TTAATATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 22 0.79
25 2 0.07
26 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TAATTTATAACTATTATAAATTA
Found at i:58184 original size:21 final size:20
Alignment explanation
Indices: 58160--58249 Score: 56
Period size: 21 Copynumber: 4.2 Consensus size: 20
58150 TATTAAATAT
58160 AAATTATTTAATATCATATTA
1 AAATTATTTAATAT-ATATTA
* *
58181 AAATTAATTAATTATACTAGTA
1 AAATTATTTAA-TATA-TATTA
* * *
58203 ATAATTA-TGACTATTTAATTA
1 A-AATTATTTAATATAT-ATTA
* *
58224 CAATTATTAAATATCATATTA
1 AAATTATTTAATAT-ATATTA
58245 AAATT
1 AAATT
58250 TAATTATGTT
Statistics
Matches: 52, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
20 6 0.12
21 30 0.58
22 11 0.21
23 5 0.10
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (20 bp):
AAATTATTTAATATATATTA
Found at i:58357 original size:13 final size:14
Alignment explanation
Indices: 58334--58388 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 14
58324 TTTTCACTAT
58334 TTATATTTAATTAA
1 TTATATTTAATTAA
58348 TTAT-TTTAATTAA
1 TTATATTTAATTAA
* *
58361 GTAATATTTGAATTAC
1 -TTATATTT-AATTAA
*
58377 TTA-ATTAAATTA
1 TTATATTTAATTA
58389 TATTTTTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
13 14 0.41
14 10 0.29
15 5 0.15
16 5 0.15
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (14 bp):
TTATATTTAATTAA
Found at i:58503 original size:13 final size:13
Alignment explanation
Indices: 58459--58513 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
58449 ATTATTATAG
58459 ATTAATTA-ATTTA
1 ATTAATTATA-TTA
*
58472 ATTAAATTGTATTA
1 ATT-AATTATATTA
*
58486 TTTAA-TATAATTA
1 ATTAATTAT-ATTA
58499 ATTAATTATATTA
1 ATTAATTATATTA
58512 AT
1 AT
58514 AAACTATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
12 2 0.06
13 19 0.56
14 12 0.35
15 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATTAATTATATTA
Found at i:58521 original size:27 final size:27
Alignment explanation
Indices: 58469--58521 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
58459 ATTAATTAAT
* * *
58469 TTAATTAAATTGTATTATTTAATATAA
1 TTAATTAAATTATATTAATAAATATAA
58496 TTAATT-AATTATATTAATAAACTATA
1 TTAATTAAATTATATTAATAAA-TATA
58522 TATACAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
TTAATTAAATTATATTAATAAATATAA
Found at i:58859 original size:19 final size:19
Alignment explanation
Indices: 58837--58879 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
58827 GATTTAAATG
*
58837 TTATAATATATAAAATAAT
1 TTATAATAAATAAAATAAT
* * *
58856 TTATATTAAATAAATTTAT
1 TTATAATAAATAAAATAAT
58875 TTATA
1 TTATA
58880 TATTTTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATAATAAATAAAATAAT
Found at i:59176 original size:23 final size:23
Alignment explanation
Indices: 59132--59176 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
59122 ATTTGATAAT
**
59132 TTATATATATTATAAATTTATAC
1 TTATATATATTATAAAAATATAC
59155 TTATATA-ATTATAAAAAATATA
1 TTATATATATTAT-AAAAATATA
59177 TAATTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TTATATATATTATAAAAATATAC
Found at i:59633 original size:19 final size:20
Alignment explanation
Indices: 59611--59649 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
59601 AAAAAGCAAC
* *
59611 AATTAATTAATTAT-ATTAT
1 AATTAAATAAATATAATTAT
59630 AATTAAATAAATATAATTAT
1 AATTAAATAAATATAATTAT
59650 TTATTAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTAAATAAATATAATTAT
Found at i:59664 original size:9 final size:9
Alignment explanation
Indices: 59650--59683 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
59640 ATATAATTAT
59650 TTATTAATC
1 TTATTAATC
59659 TTATTAATC
1 TTATTAATC
*
59668 TTATTTAT-
1 TTATTAATC
59676 TTATTAAT
1 TTATTAAT
59684 TTAATTCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (9 bp):
TTATTAATC
Found at i:59701 original size:26 final size:26
Alignment explanation
Indices: 59642--59702 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
59632 TTAAATAAAT
*
59642 ATAATTATTTATTAATCTTATTAATC
1 ATAATTATTTATTAATCTTATTAATA
* * *
59668 TTATTTATTTATTAAT-TTAATTCATA
1 ATAATTATTTATTAATCTT-ATTAATA
59694 ATAATTATT
1 ATAATTATT
59703 AATATAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (26 bp):
ATAATTATTTATTAATCTTATTAATA
Found at i:60145 original size:15 final size:16
Alignment explanation
Indices: 60098--60149 Score: 67
Period size: 15 Copynumber: 3.5 Consensus size: 16
60088 TTAACAATTA
*
60098 ATAATTATTAATTA--
1 ATAATTATTTATTATT
60112 AT-ATTATTTATTATT
1 ATAATTATTTATTATT
60127 ATAATTATTTATT-TT
1 ATAATTATTTATTATT
60142 ATAATTAT
1 ATAATTAT
60150 AAATAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
13 10 0.29
14 2 0.06
15 12 0.35
16 10 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATAATTATTTATTATT
Found at i:62338 original size:182 final size:182
Alignment explanation
Indices: 61969--62340 Score: 543
Period size: 182 Copynumber: 2.0 Consensus size: 182
61959 TAGTAATTAA
** * *
61969 TTAAAAAAATAAATTTGTTTATTGGTCAAGTTCAAATAATTATGACTATTTGAACAATTATTTAT
1 TTAAAAAAATAAATTTGTTTATTGAACAAATTCAAATAATTATGACTATTTGAACAATTATCTAT
* *
62034 TTAAAATCGTTATGACCTTTTGTTTTGACAAAAAAATAATTGTTTCAGTTCATAAAACCTTTTCC
66 TTAAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAACCTTTTCC
* *
62099 AAAATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATAAGCAAGAGT
131 AAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGCAAGAGT
* * *
62151 TTAAAAAAGTTAATTTGTTTATTGAACAAATTCAAATAGTTATGACTATTTGAACAATTATCTAT
1 TTAAAAAAATAAATTTGTTTATTGAACAAATTCAAATAATTATGACTATTTGAACAATTATCTAT
* *
62216 TTAAAATCATTATGACCTTTTGTTTTGTC-ATAAAACAATTGTTTCAGTTCATACAAA-CTTATT
66 TTAAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATA-AAACCTT-TT
* * * *
62279 -CGAAATAAAATAATAGTAATTTATTAATATTCCAAAAATTAATAAGTAAGTGAT
129 CCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGCAAGAG-T
62333 TTAAAAAA
1 TTAAAAAA
62341 TGATTCTGTT
Statistics
Matches: 170, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
181 71 0.42
182 99 0.58
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (182 bp):
TTAAAAAAATAAATTTGTTTATTGAACAAATTCAAATAATTATGACTATTTGAACAATTATCTAT
TTAAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAACCTTTTCC
AAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGCAAGAGT
Found at i:62397 original size:181 final size:181
Alignment explanation
Indices: 61995--62403 Score: 529
Period size: 181 Copynumber: 2.3 Consensus size: 181
61985 GTTTATTGGT
* *
61995 CAAGTTCAAATAATTATGACTATTTGAACAATTATTTATTTAAAATCGTTATGACCTTTTGTTTT
1 CAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTT
* *
62060 GACAAAAAAATAATTGTTTCAGTTCATAAAACCTTTTCCAAAATAAAATAATACTAATTTCTTAA
66 GACAAAAAAACAATTGTTTCAGTTCATAAAACCTTTTCCAAAATAAAATAATACTAATTTATTAA
* ***
62125 TATTTCAAAAATTAATAAGCAAGAGTTTAAAAAAGTTAATTTGTTTATTGAA
131 TATTCCAAAAATTAATAAGCAAGAGTTTAAAAAAG-TAATTTGTTTACAAAA
* *
62177 CAAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTT
1 CAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTT
* * * *
62242 GTC-ATAAAACAATTGTTTCAGTTCATACAAA-CTTATT-CGAAATAAAATAATAGTAATTTATT
66 GACAAAAAAACAATTGTTTCAGTTCATA-AAACCTT-TTCCAAAATAAAATAATACTAATTTATT
* * *
62304 AATATTCCAAAAATTAATAAGTAAGTGATTTAAAAAA-TGATTCTGTTTACAAAA
129 AATATTCCAAAAATTAATAAGCAAGAG-TTTAAAAAAGTAATT-TGTTTACAAAA
** * * * * *
62358 TTAGTTCAAATAATTACGGCTATTTCAACAATAATCTATTTGAAAT
1 CAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAAT
62404 ATATATATAA
Statistics
Matches: 197, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
180 4 0.02
181 116 0.59
182 77 0.39
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (181 bp):
CAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTT
GACAAAAAAACAATTGTTTCAGTTCATAAAACCTTTTCCAAAATAAAATAATACTAATTTATTAA
TATTCCAAAAATTAATAAGCAAGAGTTTAAAAAAGTAATTTGTTTACAAAA
Found at i:63516 original size:12 final size:13
Alignment explanation
Indices: 63487--63524 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
63477 AATTATTGTT
63487 TTATAATTAAATAA
1 TTATAA-TAAATAA
63501 TTATAATAAA-AA
1 TTATAATAAATAA
*
63513 TTATTATAAATA
1 TTATAATAAATA
63525 CATATTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 11 0.50
13 5 0.23
14 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TTATAATAAATAA
Found at i:64336 original size:180 final size:180
Alignment explanation
Indices: 64131--64481 Score: 433
Period size: 180 Copynumber: 1.9 Consensus size: 180
64121 AAATAAAAGA
* * *
64131 TCATAATGATTTGAAATAAATAATTGTTTAAACAGCCATAACTATTTGAACT-CACTCGGTAAAT
1 TCATAATGATTTGAAATAAATAATTGTTCAAACAGCCATAACTATTTGAA-TGCACTCAGAAAAT
* * * *
64195 AAATTTATTTTTTAAATCTTTTACTTATTAATTTT-GGAATATTAATTAA-TTAGAATTATTTTA
65 AAATTTATTTTCTAAA-ATTATACTTATTAATTTTGGGAATATTAATAAATTTA-AATTATTTTA
* ** *
64258 TTCCAAATA-AGCTTGTTTGAATAGAAA-CAATTGGTTTATGACAAAACAAATGG
128 TTCAAAATACA-CTTGCATGAACA-AAACCAATTGGTTTATGACAAAACAAATGG
* * * ***
64311 TCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATGTGTTCAGAAAATA
1 TCATAATGATTTGAAATAAATAATTGTTCAAACAGCCATAACTATTTGAATGCACTCAGAAAATA
** *
64376 GCTTTATTTTCTAAAATTATACTTATTAATTTTGGGAATATTAATAAATTTATATTATTTTATTC
66 AATTTATTTTCTAAAATTATACTTATTAATTTTGGGAATATTAATAAATTTAAATTATTTTATTC
*
64441 AAAATACACTTGCATGAACAAAACCAATTGTTTTATGACAA
131 AAAATACACTTGCATGAACAAAACCAATTGGTTTATGACAA
64482 TTGATATAAC
Statistics
Matches: 145, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
179 20 0.14
180 121 0.83
181 4 0.03
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
TCATAATGATTTGAAATAAATAATTGTTCAAACAGCCATAACTATTTGAATGCACTCAGAAAATA
AATTTATTTTCTAAAATTATACTTATTAATTTTGGGAATATTAATAAATTTAAATTATTTTATTC
AAAATACACTTGCATGAACAAAACCAATTGGTTTATGACAAAACAAATGG
Found at i:64611 original size:16 final size:16
Alignment explanation
Indices: 64592--64623 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64582 TATTAATATT
64592 ATTAATTAATAATAAA
1 ATTAATTAATAATAAA
*
64608 ATTAGTTAATAATAAA
1 ATTAATTAATAATAAA
64624 TATATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTAATTAATAATAAA
Found at i:64638 original size:19 final size:19
Alignment explanation
Indices: 64524--64639 Score: 55
Period size: 19 Copynumber: 5.9 Consensus size: 19
64514 TATGACTATT
*
64524 AATATA-ATTAGTATAATA
1 AATATATATTATTATAATA
*
64542 TAATAT-TTTATATTATAA-A
1 -AATATATAT-TATTATAATA
* *
64561 TAATATATATCATT-CAATA
1 -AATATATATTATTATAATA
*
64580 GATATTAATATTATTAATTAAT-
1 AATA-T-ATATTATT-A-TAATA
*
64602 AATA-AAATTAGTTAATAATA
1 AATATATATTA-TT-ATAATA
64622 AATATATATTATTATAAT
1 AATATATATTATTATAAT
64640 TTTATTATAA
Statistics
Matches: 74, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
18 5 0.07
19 32 0.43
20 26 0.35
21 5 0.07
22 3 0.04
23 3 0.04
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (19 bp):
AATATATATTATTATAATA
Found at i:64833 original size:11 final size:11
Alignment explanation
Indices: 64791--64833 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
64781 TATTATAATA
64791 TTAAT-ATT-T
1 TTAATAATTAT
*
64800 TTAATAATTAA
1 TTAATAATTAT
64811 TTAATAGATTAT
1 TTAATA-ATTAT
64823 TTAATAATTAT
1 TTAATAATTAT
64834 ATATTAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 11 0.38
12 10 0.34
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (11 bp):
TTAATAATTAT
Found at i:65209 original size:17 final size:18
Alignment explanation
Indices: 65189--65232 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
65179 ATATTAATCA
65189 ATAAATTAAT-AAATATT
1 ATAAATTAATCAAATATT
*
65206 ATAAATT-ATCAATTATT
1 ATAAATTAATCAAATATT
65223 ATATAATTAA
1 ATA-AATTAA
65233 ATGTTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 16 0.70
18 4 0.17
19 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAAATTAATCAAATATT
Found at i:65248 original size:15 final size:15
Alignment explanation
Indices: 65198--65254 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
65188 AATAAATTAA
65198 TAAATATTATA-AAT
1 TAAATATTATATAAT
65212 TATCAATTATTATATAAT
1 TA--AA-TATTATATAAT
*
65230 TAAATGTTATAATAA-
1 TAAATATTAT-ATAAT
65245 TAAATATTAT
1 TAAATATTAT
65255 TTATTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 2 0.06
15 14 0.39
16 8 0.22
17 7 0.19
18 5 0.14
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (15 bp):
TAAATATTATATAAT
Found at i:65639 original size:20 final size:20
Alignment explanation
Indices: 65590--65640 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
65580 TATTATAATG
*
65590 ATAATAATAATTTTATTATA
1 ATAATAATTATTTTATTATA
*
65610 ACT-ATTATTATTTT-TGTATA
1 A-TAATAATTATTTTAT-TATA
65630 ATAATAATTAT
1 ATAATAATTAT
65641 ACAATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 2 0.08
20 22 0.88
21 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
ATAATAATTATTTTATTATA
Found at i:66246 original size:18 final size:18
Alignment explanation
Indices: 66223--66257 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66213 GTCCAATTAA
66223 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
66241 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
66258 ATACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:66270 original size:13 final size:14
Alignment explanation
Indices: 66238--66284 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
66228 ATAATAAATA
*
66238 ATTATTATATA-AT
1 ATTATAATATACAT
66251 A-TATAATATACA-
1 ATTATAATATACAT
66263 ATTATAAT-TACAT
1 ATTATAATATACAT
66276 ATTATAATA
1 ATTATAATA
66285 ATTAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:66315 original size:14 final size:15
Alignment explanation
Indices: 66223--66317 Score: 52
Period size: 18 Copynumber: 5.9 Consensus size: 15
66213 GTCCAATTAA
66223 ATTATATAATAAATAATT
1 ATTAT-TAAT-AATAA-T
66241 ATTATATAATATATAAT
1 ATTAT-TAATA-ATAAT
*
66258 ATACAATT-ATAATTACAT
1 AT--TATTAATAA-TA-AT
66276 ATTA-TAATAATTAAT
1 ATTATTAATAA-TAAT
* *
66291 ATGATTCATAA-AAT
1 ATTATTAATAATAAT
66305 ATTATTAATAATA
1 ATTATTAATAATA
66318 TTTAAATATA
Statistics
Matches: 63, Mismatches: 6, Indels: 19
0.72 0.07 0.22
Matches are distributed among these distances:
14 12 0.19
15 7 0.11
16 14 0.22
17 9 0.14
18 19 0.30
19 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (15 bp):
ATTATTAATAATAAT
Found at i:66345 original size:35 final size:36
Alignment explanation
Indices: 66305--66400 Score: 90
Period size: 39 Copynumber: 2.6 Consensus size: 36
66295 TTCATAAAAT
*
66305 ATTATTAATAATATTTAAATATAATAATT-TATTAA
1 ATTATTAATAATATTTAAATATAATAATTATAATAA
* *
66340 ATTATTACATGATACTATATAAAT-TAATTATTATAATAA
1 ATTATTA-AT-A-A-TATTTAAATATAATAATTATAATAA
*
66379 A-TAGTAATAATATTATAAATAT
1 ATTATTAATAATATT-TAAATAT
66401 TAACTAATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
34 3 0.06
35 13 0.27
36 4 0.08
37 3 0.06
38 12 0.24
39 14 0.29
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (36 bp):
ATTATTAATAATATTTAAATATAATAATTATAATAA
Found at i:66398 original size:18 final size:17
Alignment explanation
Indices: 66310--66410 Score: 64
Period size: 18 Copynumber: 5.5 Consensus size: 17
66300 AAAATATTAT
66310 TAATAATATT-TAAATA
1 TAATAATATTATAAATA
66326 TAATAAT-TTATTAAATTA
1 TAATAATATTA-TAAA-TA
*
66344 TTACATGATACTATATAAAT-
1 -TA-ATAATA-T-TATAAATA
* *
66364 TAATTATTATAATAAATA
1 TAA-TAATATTATAAATA
66382 GTAATAATATTATAAATA
1 -TAATAATATTATAAATA
66400 TTAACTAATAT
1 -TAA-TAATAT
66411 AGGACTATTA
Statistics
Matches: 66, Mismatches: 7, Indels: 21
0.70 0.07 0.22
Matches are distributed among these distances:
15 2 0.03
16 7 0.11
17 10 0.15
18 19 0.29
19 16 0.24
20 4 0.06
21 1 0.02
22 5 0.08
23 2 0.03
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (17 bp):
TAATAATATTATAAATA
Found at i:66733 original size:17 final size:17
Alignment explanation
Indices: 66709--66748 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
66699 TATAGTTTAG
66709 ATATTTTTTT-ATAAAT
1 ATATTTTTTTAATAAAT
66725 ATATATTTTTTCAATAAAT
1 ATAT-TTTTTT-AATAAAT
66744 ATATT
1 ATATT
66749 AATTTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 4 0.19
17 6 0.29
18 1 0.05
19 10 0.48
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTTTTTTAATAAAT
Found at i:66775 original size:16 final size:16
Alignment explanation
Indices: 66754--66787 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
66744 ATATTAATTT
66754 TAATTAT-TTAAAATAA
1 TAATTATATTAAAA-AA
66770 TAATTATATTAAAAAA
1 TAATTATATTAAAAAA
66786 TA
1 TA
66788 TATAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATTATATTAAAAAA
Found at i:67872 original size:11 final size:10
Alignment explanation
Indices: 67856--67930 Score: 52
Period size: 10 Copynumber: 7.6 Consensus size: 10
67846 ATTATAATTC
67856 ATAATTTATAA
1 ATAATTTAT-A
67867 ATAATTTATA
1 ATAATTTATA
67877 ATAA--TATA
1 ATAATTTATA
*
67885 ATAAATTAT-
1 ATAATTTATA
*
67894 ATAA-ATATA
1 ATAATTTATA
67903 TATAA-TTATA
1 -ATAATTTATA
*
67913 ATAAGTATTATT
1 ATAA-T-TTATA
67925 ATAATT
1 ATAATT
67931 ATTTAATCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
8 11 0.20
9 8 0.15
10 17 0.31
11 10 0.19
12 8 0.15
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (10 bp):
ATAATTTATA
Found at i:67887 original size:18 final size:17
Alignment explanation
Indices: 67825--67916 Score: 66
Period size: 18 Copynumber: 5.2 Consensus size: 17
67815 AATATCAAGT
*
67825 ATAA-ATAATAATAAT-
1 ATAATATAATAATTATA
*
67840 ATAATTATTATAATTCATA
1 ATAA-TATAATAATT-ATA
*
67859 AT-TTATAAATAATTTATA
1 ATAATAT-AATAA-TTATA
67877 ATAATATAATAAATTAT-
1 ATAATATAAT-AATTATA
67894 ATAAATATATATAATTATA
1 AT-AATATA-ATAATTATA
67913 ATAA
1 ATAA
67917 GTATTATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
15 4 0.07
17 12 0.20
18 32 0.52
19 13 0.21
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAATATAATAATTATA
Found at i:67956 original size:20 final size:22
Alignment explanation
Indices: 67919--67960 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
67909 TATAATAAGT
67919 ATTATTATAATTATTTAATCTA
1 ATTATTATAATTATTTAATCTA
*
67941 ATTATTA-ATTTA-TTAATCTA
1 ATTATTATAATTATTTAATCTA
67961 TTCAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 4 0.21
22 7 0.37
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTATTATAATTATTTAATCTA
Found at i:68265 original size:7 final size:7
Alignment explanation
Indices: 68218--68293 Score: 57
Period size: 7 Copynumber: 10.9 Consensus size: 7
68208 AGTAAATATT
68218 ATTAATA
1 ATTAATA
*
68225 ATTAACA
1 ATTAATA
*
68232 ATTTATA
1 ATTAATA
68239 ATATAATA
1 AT-TAATA
*
68247 TATT-ATG
1 -ATTAATA
68254 A-TAATA
1 ATTAATA
*
68260 ATTAATT
1 ATTAATA
*
68267 ATTATTA
1 ATTAATA
68274 ATTAATA
1 ATTAATA
* *
68281 TTTTATA
1 ATTAATA
68288 ATTAAT
1 ATTAAT
68294 TTATAATTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
5 1 0.02
6 4 0.08
7 39 0.76
8 5 0.10
9 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
ATTAATA
Found at i:68313 original size:12 final size:11
Alignment explanation
Indices: 68279--68316 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
68269 TATTAATTAA
68279 TATTTTATAAT
1 TATTTTATAAT
*
68290 TAATTTATAAT
1 TATTTTATAAT
68301 TATTTTATAAAT
1 TATTTTAT-AAT
68313 TATT
1 TATT
68317 AAATATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 17 0.71
12 7 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTATAAT
Found at i:68415 original size:18 final size:16
Alignment explanation
Indices: 68394--68435 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
68384 ATTACTAGTT
68394 ATACTTATATTATTAATA
1 ATACTTATATTA-TAA-A
*
68412 ATACATATATTATAAA
1 ATACTTATATTATAAA
68428 ATA-TTATA
1 ATACTTATA
68436 ATAAACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 4 0.18
16 4 0.18
17 3 0.14
18 11 0.50
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
ATACTTATATTATAAA
Found at i:68562 original size:9 final size:9
Alignment explanation
Indices: 68543--68593 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
68533 AGTATTATAC
*
68543 TAATTAATA
1 TAATTATTA
*
68552 TATTTATTA
1 TAATTATTA
68561 TAATTATTA
1 TAATTATTA
*
68570 -AATAATTA
1 TAATTATTA
*
68578 TAATAATTA
1 TAATTATTA
68587 TAATTAT
1 TAATTAT
68594 GTTAAGGTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
8 7 0.19
9 29 0.81
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
TAATTATTA
Found at i:68583 original size:20 final size:21
Alignment explanation
Indices: 68545--68587 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
68535 TATTATACTA
* *
68545 ATTAATATATTTATTATAATT
1 ATTAATATAATTATAATAATT
68566 ATTAA-ATAATTATAATAATT
1 ATTAATATAATTATAATAATT
68586 AT
1 AT
68588 AATTATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTAATATAATTATAATAATT
Found at i:69211 original size:21 final size:23
Alignment explanation
Indices: 69177--69222 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
69167 GATAATATCA
69177 ATTTAATATTCAAATATT-AATT
1 ATTTAATATTCAAATATTAAATT
69199 ATTTAAT-TTCAAATATTAAATT
1 ATTTAATATTCAAATATTAAATT
69221 AT
1 AT
69223 AAATAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
ATTTAATATTCAAATATTAAATT
Found at i:69246 original size:19 final size:20
Alignment explanation
Indices: 69215--69253 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
69205 TTTCAAATAT
69215 TAAATTATAAATAA-TTGAA
1 TAAATTATAAATAACTTGAA
69234 TAAA-TATATAATAACTTGAA
1 TAAATTATA-AATAACTTGAA
69254 GCAGATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
TAAATTATAAATAACTTGAA
Found at i:69308 original size:19 final size:20
Alignment explanation
Indices: 69286--69390 Score: 61
Period size: 19 Copynumber: 5.5 Consensus size: 20
69276 ATAACATAAC
69286 TTAATTATAATATAATTAT-
1 TTAATTATAATATAATTATA
69305 TTAATGT-T-A-ATAATTATA
1 TTAAT-TATAATATAATTATA
69323 TTAA-TATTAATA-AATTATA
1 TTAATTA-TAATATAATTATA
*
69342 -T-ATTA-ATTATAATTTATA
1 TTAATTATAATATAA-TTATA
*
69360 ATAATTAT-ATACTATATTATA
1 TTAATTATAATA-TA-ATTATA
*
69381 ATAA-TATAAT
1 TTAATTATAAT
69391 TTTCCTTTAC
Statistics
Matches: 69, Mismatches: 2, Indels: 28
0.70 0.02 0.28
Matches are distributed among these distances:
16 4 0.06
17 11 0.16
18 14 0.20
19 15 0.22
20 11 0.16
21 13 0.19
22 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (20 bp):
TTAATTATAATATAATTATA
Found at i:69370 original size:18 final size:18
Alignment explanation
Indices: 69314--69392 Score: 56
Period size: 18 Copynumber: 4.4 Consensus size: 18
69304 TTTAATGTTA
*
69314 ATAATTATATTAATATTAAT
1 ATAATT-TA-TAATAATAAT
*
69334 A-AA-TTAT-ATATTAATT
1 ATAATTTATAATAATAA-T
*
69350 ATAATTTATAATAATTAT
1 ATAATTTATAATAATAAT
* * *
69368 ATACTATATTATAATAAT
1 ATAATTTATAATAATAAT
69386 ATAATTT
1 ATAATTT
69393 TCCTTTACCA
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
15 7 0.15
16 3 0.06
17 4 0.09
18 25 0.53
19 7 0.15
20 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAATTTATAATAATAAT
Found at i:69828 original size:13 final size:13
Alignment explanation
Indices: 69810--69834 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69800 ATACTTTATT
69810 AATAATTAGATTA
1 AATAATTAGATTA
69823 AATAATTAGATT
1 AATAATTAGATT
69835 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:70010 original size:17 final size:17
Alignment explanation
Indices: 69984--70035 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
69974 CATTTATATC
*
69984 ATATTTTAATTAATTAT
1 ATATTATAATTAATTAT
*
70001 ATATTATAATTAAATTAG
1 ATATTATAATT-AATTAT
70019 ATTATTAT--TTAATTAT
1 A-TATTATAATTAATTAT
70035 A
1 A
70036 AAATTATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.20
17 12 0.40
18 6 0.20
19 6 0.20
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
ATATTATAATTAATTAT
Found at i:70041 original size:16 final size:17
Alignment explanation
Indices: 70022--70054 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70012 AAATTAGATT
70022 ATTA-TTTAATTATAAA
1 ATTATTTTAATTATAAA
*
70038 ATTATTTTAATTTTAAA
1 ATTATTTTAATTATAAA
70055 TTAATAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTATTTTAATTATAAA
Found at i:70070 original size:30 final size:28
Alignment explanation
Indices: 70035--70123 Score: 74
Period size: 30 Copynumber: 2.9 Consensus size: 28
70025 ATTTAATTAT
70035 AAAATTATTTTAATTTTAAATTAATAAGTA
1 AAAATTATTTTAATTTTAAATTAATAA--A
70065 AAAATT-TTAATTAATTTT-AATTATATAAA
1 AAAATTATT--TTAATTTTAAATTA-ATAAA
*
70094 ATAAATTAGATTTAATATTTAAAATTAATA
1 A-AAATTA-TTTTAAT-TTT-AAATTAATA
70124 TATATTATAG
Statistics
Matches: 49, Mismatches: 1, Indels: 16
0.74 0.02 0.24
Matches are distributed among these distances:
29 4 0.08
30 21 0.43
31 15 0.31
32 4 0.08
33 5 0.10
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
AAAATTATTTTAATTTTAAATTAATAAA
Found at i:70629 original size:7 final size:7
Alignment explanation
Indices: 70583--70646 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
70573 ATATAATAAT
70583 TTATTAA
1 TTATTAA
70590 TTTATTAA
1 -TTATTAA
*
70598 TTATTTA
1 TTATTAA
*
70605 TAATTAA
1 TTATTAA
*
70612 -TAATAA
1 TTATTAA
70618 TTTATTAA
1 -TTATTAA
70626 TTATT-A
1 TTATTAA
70632 TTATTATA
1 TTATTA-A
70640 TT-TTAA
1 TTATTAA
70646 T
1 T
70647 AATAATGGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
6 12 0.26
7 19 0.41
8 15 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTATTAA
Found at i:70641 original size:18 final size:17
Alignment explanation
Indices: 70581--70641 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
70571 CAATATAATA
70581 ATTTATTAATTTATTAATT
1 ATTTATTAA-TTATT-ATT
* *
70600 ATTTA-TAATTAATAATA
1 ATTTATTAATT-ATTATT
70617 ATTTATTAATTATTATT
1 ATTTATTAATTATTATT
70634 ATTATATT
1 ATT-TATT
70642 TTAATAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
17 16 0.46
18 14 0.40
19 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTATTAATTATTATT
Found at i:70660 original size:34 final size:35
Alignment explanation
Indices: 70575--70660 Score: 86
Period size: 34 Copynumber: 2.5 Consensus size: 35
70565 AATAAGCAAT
**
70575 ATAATAATTTATTAATTTATTAATTATTTATAATTA
1 ATAATAATGGATTAA-TTATTAATTATTTATAATTA
** *
70611 ATAATAATTTATTAATTATT-ATTA-TTATATTTTA
1 ATAATAATGGATTAATTATTAATTATTTATA-ATTA
*
70645 ATAATAATGGCTTAAT
1 ATAATAATGGATTAAT
70661 AAAAAGCGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
33 5 0.11
34 20 0.44
35 5 0.11
36 15 0.33
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.53
Consensus pattern (35 bp):
ATAATAATGGATTAATTATTAATTATTTATAATTA
Found at i:70946 original size:23 final size:25
Alignment explanation
Indices: 70898--70947 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
70888 TTAATTAAAA
*
70898 TATAAATATTTAATTAAATTATTAT
1 TATAAATACTTAATTAAATTATTAT
*
70923 TATAAATACTT-A-TAATTTATTAT
1 TATAAATACTTAATTAAATTATTAT
70946 TA
1 TA
70948 ATTATCTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
24 1 0.04
25 10 0.43
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATAAATACTTAATTAAATTATTAT
Found at i:71137 original size:16 final size:17
Alignment explanation
Indices: 71105--71137 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71095 ACAAAAGGTC
*
71105 ATAATTGTGTGAAATAA
1 ATAATTGTGTCAAATAA
71122 ATAATTGT-TCAAATAA
1 ATAATTGTGTCAAATAA
71138 TCATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.36
Consensus pattern (17 bp):
ATAATTGTGTCAAATAA
Found at i:72062 original size:23 final size:24
Alignment explanation
Indices: 72014--72092 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
72004 CCATATTATA
* *
72014 ATTATTTAATGAAATATTATTAAT
1 ATTATCTAATAAAATATTATTAAT
72038 ATTATCTAATAAAAT-TTATCTATAT
1 ATTATCTAATAAAATATTAT-TA-AT
* *
72063 AATTAT-AAATAAATTAATTATTAACT
1 -ATTATCTAATAAAAT-ATTATTAA-T
72089 ATTA
1 ATTA
72093 ATAATAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
23 4 0.09
24 15 0.33
25 14 0.31
26 8 0.18
27 4 0.09
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (24 bp):
ATTATCTAATAAAATATTATTAAT
Found at i:72465 original size:22 final size:22
Alignment explanation
Indices: 72406--72466 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
72396 ATTATTATTG
72406 TTAATATCA-AATTATTTATAAT
1 TTAATAT-ATAATTATTTATAAT
* *
72428 TTTATAAATTAA-TATTTA-ATAT
1 TTAATATA-TAATTATTTATA-AT
72450 TTAATATATAATTATTT
1 TTAATATATAATTATTT
72467 GTAACATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
21 5 0.16
22 24 0.77
23 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAATATATAATTATTTATAAT
Found at i:72651 original size:49 final size:49
Alignment explanation
Indices: 72557--72656 Score: 123
Period size: 49 Copynumber: 2.0 Consensus size: 49
72547 TTAATAATTA
* *
72557 TATTATTATTATAAATTAATAAAACAATTAATATATTATAATAAATTGT
1 TATTATTATAATAAATTAATAAAACAATTAATATAATATAATAAATTGT
* * *
72606 TATTATTATAATATTATTAATATAAC-ATT-ATATTAATATAGTAAATTGT
1 TATTATTATAATA-AATTAATAAAACAATTAATA-TAATATAATAAATTGT
72655 TA
1 TA
72657 GCATATTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
48 3 0.07
49 31 0.70
50 10 0.23
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (49 bp):
TATTATTATAATAAATTAATAAAACAATTAATATAATATAATAAATTGT
Found at i:73283 original size:180 final size:181
Alignment explanation
Indices: 72959--73291 Score: 388
Period size: 180 Copynumber: 1.8 Consensus size: 181
72949 AATAATTATA
* * * *
72959 ACTATTTGAACAATTATCTATTTTAAATCATTATTAATTTTTGTTTTGTCATAAAACAATTGTTT
1 ACTATTTGAACAATTATCTATTTCAAATCATTATTAATTTTTATTTTATCATAAAACAATTGGTT
* * ** * *
73024 TTGTTAAAATAAGTTTATTTGAAATAAAATAATATTGTTTTATTAATATTTAGAAAATAAATCTA
66 CTGTTAAAATAAGTTTATTTGAAATAAAATAATACTAATTTAATAATATTTAGAAAATAAATCAA
* *
73089 TAAGAGATTTAAAAAGA-AAATCTGCTTACCAAACCATTTCAAATAGTTTTG
131 TAAGAAAATTAAAAA-ATAAATCTGCTTACCAAACCATTTCAAATAGTTTTG
* * * *
73140 ACTATTTTAATAATTATTTATTTCAAATCATTA-TAACTTTTTATTTTATCATCAAACAATTGGT
1 ACTATTTGAACAATTATCTATTTCAAATCATTATTAA-TTTTTATTTTATCATAAAACAATTGGT
** * * * * *
73204 TCTGTTCTACT-ATTTTATTT-AGAATAAAATAATACTAATTTAATAATATTTTGAAACTTAAT-
65 TCTGTTAAAATAAGTTTATTTGA-AATAAAATAATACTAATTTAATAATATTTAGAAAATAAATC
73266 AACTAAGAAAATTAAAAAATAAATCT
129 AA-TAAGAAAATTAAAAAATAAATCT
73292 AATTGTCAAA
Statistics
Matches: 125, Mismatches: 23, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
179 3 0.02
180 63 0.50
181 59 0.47
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (181 bp):
ACTATTTGAACAATTATCTATTTCAAATCATTATTAATTTTTATTTTATCATAAAACAATTGGTT
CTGTTAAAATAAGTTTATTTGAAATAAAATAATACTAATTTAATAATATTTAGAAAATAAATCAA
TAAGAAAATTAAAAAATAAATCTGCTTACCAAACCATTTCAAATAGTTTTG
Found at i:73312 original size:180 final size:181
Alignment explanation
Indices: 72959--73353 Score: 386
Period size: 180 Copynumber: 2.2 Consensus size: 181
72949 AATAATTATA
* * * *
72959 ACTATTTGAACAATTATCTATTTTAAATCATTATTAATTTTTGTTTTGTCATAAAACAATTGTTT
1 ACTATTTGAACAATTATCTATTTCAAATCATTATTAATTTTTATTTTATCATAAAACAATTGGTT
* * ** * *
73024 TTGTTAAAATAAGTTTATTTGAAATAAAATAATATTGTTTTATTAATATTTAGAAAATAAATCTA
66 CTGTTAAAATAAGTTTATTTGAAATAAAATAATACTAATTTAATAATATTTAGAAAATAAATCAA
* * ** *
73089 TAAGAGATTTAAAAAGAAAATCTGCTTACCAAACCATTTCAAATAGTTTTG
131 TAAGAAAATTAAAAAGAAAATCTAATTACCAAACCAATTCAAATAGTTTTG
* * * *
73140 ACTATTTTAATAATTATTTATTTCAAATCATTA-TAACTTTTTATTTTATCATCAAACAATTGGT
1 ACTATTTGAACAATTATCTATTTCAAATCATTATTAA-TTTTTATTTTATCATAAAACAATTGGT
** * * * * *
73204 TCTGTTCTACT-ATTTTATTT-AGAATAAAATAATACTAATTTAATAATATTTTGAAACTTAAT-
65 TCTGTTAAAATAAGTTTATTTGA-AATAAAATAATACTAATTTAATAATATTTAGAAAATAAATC
** * **
73266 AACTAAGAAAATTAAAAA-ATAAATCTAATTGTCAAATCAATTCAAATAGTTAAG
129 AA-TAAGAAAATTAAAAAGA-AAATCTAATTACCAAACCAATTCAAATAGTTTTG
* * ** * *
73320 ACTCTATGAATGATTATCTATTTTAAATCGTTAT
1 ACTATTTGAACAATTATCTATTTCAAATCATTAT
73354 GACCTTTTCA
Statistics
Matches: 171, Mismatches: 38, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
179 3 0.02
180 109 0.64
181 59 0.35
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (181 bp):
ACTATTTGAACAATTATCTATTTCAAATCATTATTAATTTTTATTTTATCATAAAACAATTGGTT
CTGTTAAAATAAGTTTATTTGAAATAAAATAATACTAATTTAATAATATTTAGAAAATAAATCAA
TAAGAAAATTAAAAAGAAAATCTAATTACCAAACCAATTCAAATAGTTTTG
Found at i:73477 original size:23 final size:22
Alignment explanation
Indices: 73451--73598 Score: 89
Period size: 20 Copynumber: 6.7 Consensus size: 22
73441 TTTATTTAAA
73451 ATAATTATATTAATTATTATTTT
1 ATAATTATATTAATTATTA-TTT
73474 ATAATTAATATAAATAAATTATTATTT
1 ATAATT-ATAT---T-AATTATTATTT
**
73501 ATAATTATATTAGATTATTA-GA
1 ATAATTATATTA-ATTATTATTT
* *
73523 ATAA-TAT-TTATAGTATTAATT
1 ATAATTATATTA-ATTATTATTT
*
73544 AT-ATTATA-TATTTATTA-TT
1 ATAATTATATTAATTATTATTT
*
73563 AT-ATTAT-TTGAATTATTA-AT
1 ATAATTATATT-AATTATTATTT
73583 ATAATTATAATTAATT
1 ATAATTAT-ATTAATT
73599 TATATTGTAA
Statistics
Matches: 101, Mismatches: 10, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
19 10 0.10
20 25 0.25
21 15 0.15
22 9 0.09
23 16 0.16
24 4 0.04
26 4 0.04
27 10 0.10
28 8 0.08
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (22 bp):
ATAATTATATTAATTATTATTT
Found at i:73478 original size:14 final size:13
Alignment explanation
Indices: 73442--73508 Score: 55
Period size: 14 Copynumber: 5.1 Consensus size: 13
73432 TAATTAGAAT
* *
73442 TTATTTAAAATAA
1 TTATTTATAATTA
*
73455 TTATAT-TAATTA
1 TTATTTATAATTA
73467 TTATTTTATAATTA
1 TTA-TTTATAATTA
* **
73481 ATATAAATAAATTA
1 TTATTTAT-AATTA
73495 TTATTTATAATTA
1 TTATTTATAATTA
73508 T
1 T
73509 ATTAGATTAT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
12 7 0.17
13 16 0.39
14 18 0.44
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTATTTATAATTA
Found at i:73482 original size:27 final size:26
Alignment explanation
Indices: 73442--73517 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
73432 TAATTAGAAT
* *
73442 TTATTTA-AAATAATTATATTAATTA
1 TTATTTATAATTAATTAAATTAATTA
*
73467 TTATTTTATAATTAATATAAATAAATTA
1 TTA-TTTATAATTAAT-TAAATTAATTA
*
73495 TTATTTATAATTATATTAGATTA
1 TTATTTATAATTA-ATTAAATTA
73518 TTAGAATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 3 0.07
26 4 0.10
27 21 0.50
28 14 0.33
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (26 bp):
TTATTTATAATTAATTAAATTAATTA
Found at i:73560 original size:16 final size:17
Alignment explanation
Indices: 73502--73561 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 17
73492 TTATTATTTA
* *
73502 TAATTATATTAGATTAT
1 TAATTATATTATAGTAT
*
73519 TAGAATAATATTTATAGTAT
1 T--AATTATA-TTATAGTAT
73539 TAATTATATTATA-TAT
1 TAATTATATTATAGTAT
*
73555 TTATTAT
1 TAATTAT
73562 TATATTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 9 0.26
17 6 0.17
18 6 0.17
19 6 0.17
20 8 0.23
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (17 bp):
TAATTATATTATAGTAT
Found at i:73594 original size:51 final size:50
Alignment explanation
Indices: 73455--73604 Score: 125
Period size: 51 Copynumber: 3.0 Consensus size: 50
73445 TTTAAAATAA
*** *
73455 TTATATTA-ATTATTATTTTATAATTAATATAAATA-AATTATTATTTATAA
1 TTATATTAGATTATTAGAATAT-ATTAATATAAATATAATTA-TATTTATAT
*
73505 TTATATTAGATTATTAGAATAATATT--TAT-AGTATTAATTATATTATATAT
1 TTATATTAGATTATTAGAAT-ATATTAATATAAATA-TAATTATATT-TATAT
* * *
73555 TTATTATTATATTATTTGAAT-TATTAATATAATTATAATTA-ATTTATAT
1 TTA-TATTAGATTATTAGAATATATTAATATAAATATAATTATATTTATAT
73604 T
1 T
73605 GTAAGTGATA
Statistics
Matches: 83, Mismatches: 8, Indels: 19
0.75 0.07 0.17
Matches are distributed among these distances:
48 3 0.04
49 17 0.20
50 23 0.28
51 35 0.42
52 5 0.06
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.55
Consensus pattern (50 bp):
TTATATTAGATTATTAGAATATATTAATATAAATATAATTATATTTATAT
Found at i:74314 original size:15 final size:16
Alignment explanation
Indices: 74294--74324 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
74284 TAAATGTTTG
74294 AATTATTGATT-AATA
1 AATTATTGATTCAATA
74309 AATTATTGATTCAATA
1 AATTATTGATTCAATA
74325 GACTGTTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
AATTATTGATTCAATA
Found at i:74365 original size:16 final size:15
Alignment explanation
Indices: 74336--74370 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
74326 ACTGTTCACA
74336 TATACATTTAATTAT
1 TATACATTTAATTAT
*
74351 TATACTATTTGATTAT
1 TATAC-ATTTAATTAT
74367 TATA
1 TATA
74371 AAATTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (15 bp):
TATACATTTAATTAT
Found at i:75044 original size:92 final size:92
Alignment explanation
Indices: 74877--75046 Score: 234
Period size: 92 Copynumber: 1.8 Consensus size: 92
74867 TTGCATGAAC
* ** * * *
74877 AGAACCAATTGTTTTATGACAAAAGAAAATGTCATAATATTTTGAAATAGATAATTATTTAAATA
1 AGAAACAATTGTTTTACAACAAAAGAAAATGTCATAACAATTTGAAATAGATAATTATTCAAATA
*
74942 GTCATAACTATTTTAACTCGATTGATA
66 GACATAACTATTTTAACTCGATTGATA
*
74969 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAA-TAGTTCAAAT
1 AGAAACAATTGTTTTACAACAAAAGAAAATGTCATAACAATTTGAAATAGATAATTA-TTCAAAT
* *
75033 GGACATGACTATTT
65 AGACATAACTATTT
75047 AAATTGGTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
91 2 0.03
92 65 0.97
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.34
Consensus pattern (92 bp):
AGAAACAATTGTTTTACAACAAAAGAAAATGTCATAACAATTTGAAATAGATAATTATTCAAATA
GACATAACTATTTTAACTCGATTGATA
Found at i:75529 original size:180 final size:179
Alignment explanation
Indices: 74969--75593 Score: 602
Period size: 180 Copynumber: 3.5 Consensus size: 179
74959 TCGATTGATA
** * * * * *
74969 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
1 AGAAACAATTGTTTTATGACAAAACAAAA-GTCATAACGATTTGAAATAGATAATTGTTTAAATA
* * * * ** * * ** * * *
75034 GACATGACTATTTAAATTGGTTTGATAAATTAATTAATTTTTTAAATCTTCA-ACTTATTAATTT
65 GTCATAACTATTTGAACT-ACTCGGTAAAAAAATTTATTTTCTAAATATT-ATACTTATTAATTT
* * **
75098 TTAGAATGTTAA-AACATTAGTATTATTTTATTCCAAATAAACTTGTATGAAT
128 TTGGAATATTAATAATTTTA-TATTATTTTATTCCAAATAAACTTGTATGAAT
* * * *
75150 AGAAACAATTGTTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAAATAATTGTTCAAAC
1 AGAAACAATTGTTTTATGACAAAACAAAAG-TCATAACGATTTGAAAT-AGATAATTGTTTAAAT
* * * * *
75215 AATCATAACTATTTGAACTCACTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAA-TT
64 AGTCATAACTATTTGAACT-ACTCGGTAAAAAAATTTATTTTCTAAATATTATACTTATTAATTT
* * * *
75279 TTGGAATATTAATTAATTATA-ATTATTTTATTCCAAATAAGCTTGTTTGAAC
128 TTGGAATATTAA-TAATTTTATATTATTTTATTCCAAATAAACTTGTATGAAT
*
75331 AGAAACAATTGGTTTATGACAAAACAAATAGTCATAACGATTTGAAATAGATAATTGTTTAAATA
1 AGAAACAATTGTTTTATGACAAAACAAA-AGTCATAACGATTTGAAATAGATAATTGTTTAAATA
* * * *
75396 GTTATAACTATTTGAA-T-GT-GTTCAAAAAATAGCTTTATTTTCTAAA-ATTATATTTATTAAT
65 GTCATAACTATTTGAACTACTCGGT-AAAAAA-A--TTTATTTTCTAAATATTATACTTATTAAT
* * *
75457 TTTTGGAATATTAATAATTTTATATTATTTTATTCAAAATAAAATTGCATGAAT
126 TTTTGGAATATTAATAATTTTATATTATTTTATTCCAAATAAACTTGTATGAAT
* * * *
75511 AGAACCAATTGTTTTATGACAAAACAAAATGTCATAA-TATTTTAAAATAGATAATTGTTTAGAT
1 AGAAACAATTGTTTTATGACAAAACAAAA-GTCATAACGA-TTTGAAATAGATAATTGTTTAAAT
*
75575 AGTCATAACTATTTCAACT
64 AGTCATAACTATTTGAACT
75594 TGATTGACAA
Statistics
Matches: 372, Mismatches: 57, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
176 2 0.01
177 6 0.02
178 1 0.00
179 21 0.06
180 150 0.40
181 127 0.34
182 61 0.16
183 4 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (179 bp):
AGAAACAATTGTTTTATGACAAAACAAAAGTCATAACGATTTGAAATAGATAATTGTTTAAATAG
TCATAACTATTTGAACTACTCGGTAAAAAAATTTATTTTCTAAATATTATACTTATTAATTTTTG
GAATATTAATAATTTTATATTATTTTATTCCAAATAAACTTGTATGAAT
Found at i:75692 original size:18 final size:19
Alignment explanation
Indices: 75671--75716 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
75661 ATAATTAATT
*
75671 ATTAA-AATCTATTTTAAA
1 ATTAATAATATATTTTAAA
*
75689 ATTAATATTATATTTTAAA
1 ATTAATAATATATTTTAAA
*
75708 ATTATTAAT
1 ATTAATAAT
75717 TTGAAACTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAATAATATATTTTAAA
Found at i:75917 original size:12 final size:12
Alignment explanation
Indices: 75865--75914 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
75855 AATTTATAGC
*
75865 TAATTATGAATA
1 TAATTATAAATA
*
75877 TTA-TATAAATA
1 TAATTATAAATA
75888 TAATTATAAATA
1 TAATTATAAATA
75900 TTAATT-TAAATA
1 -TAATTATAAATA
75912 TAA
1 TAA
75915 ATTAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
11 12 0.36
12 16 0.48
13 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (12 bp):
TAATTATAAATA
Found at i:75928 original size:16 final size:16
Alignment explanation
Indices: 75873--75941 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 16
75863 GCTAATTATG
75873 AATA-TTATATAAA-T
1 AATATTTATATAAATT
*
75887 -ATAATTATA-AATATT
1 AATATTTATATAA-ATT
*
75902 AAT-TTAAATATAAATT
1 AATATT-TATATAAATT
75918 AATATTTATAT-AATT
1 AATATTTATATAAATT
*
75933 AAAATTTAT
1 AATATTTAT
75942 CTTATATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
13 5 0.11
14 6 0.14
15 14 0.32
16 15 0.34
17 4 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AATATTTATATAAATT
Found at i:75952 original size:22 final size:22
Alignment explanation
Indices: 75924--75971 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
75914 AATTAATATT
75924 TATATAATTAAAATTTATCTTA
1 TATATAATTAAAATTTATCTTA
75946 TATATAATTAAAATTTATCTTA
1 TATATAATTAAAATTTATCTTA
75968 TATA
1 TATA
75972 ATTAACTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
TATATAATTAAAATTTATCTTA
Found at i:75982 original size:22 final size:21
Alignment explanation
Indices: 75913--75976 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 21
75903 ATTTAAATAT
* *
75913 AAATTAATATTTATATAATTA
1 AAATTTATCTTTATATAATTA
75934 AAATTTATCTTATATATAATTA
1 AAATTTATCTT-TATATAATTA
75956 AAATTTATC-TTATATAATTA
1 AAATTTATCTTTATATAATTA
75976 A
1 A
75977 CTAATTATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.28
21 10 0.25
22 19 0.47
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (21 bp):
AAATTTATCTTTATATAATTA
Found at i:76029 original size:22 final size:22
Alignment explanation
Indices: 75914--76029 Score: 91
Period size: 22 Copynumber: 5.3 Consensus size: 22
75904 TTTAAATATA
75914 AATTAATATTTATATAATTAAA-
1 AATT-ATATTTATATAATTAAAT
* *
75936 ATTTATCTTATATATAATT-AA-
1 AATTATATT-TATATAATTAAAT
*
75957 AATT-TATCTTATATAATTAACT
1 AATTATAT-TTATATAATTAAAT
*
75979 AATTATTAATTA-ATTAAATT-AAT
1 AATTA-TATTTATA-T-AATTAAAT
76002 AATTATATTTATATAATTAAAT
1 AATTATATTTATATAATTAAAT
*
76024 ACTTAT
1 AATTAT
76030 TTAATTTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
20 11 0.15
21 15 0.20
22 31 0.41
23 12 0.16
24 6 0.08
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATATTTATATAATTAAAT
Found at i:76032 original size:20 final size:20
Alignment explanation
Indices: 75920--76032 Score: 79
Period size: 20 Copynumber: 5.3 Consensus size: 20
75910 TATAAATTAA
75920 TATTTATATAATTAAA-ATT
1 TATTTATATAATTAAATATT
75939 TATCTTATATATAATTAAA-ATT
1 TA--TT-TATATAATTAAATATT
* *
75961 TATCTTATATAATTAACTAAT
1 TAT-TTATATAATTAAATATT
*
75982 TATTAAT-TAATTAAATTAATAATT
1 TATTTATATAATT--A--AAT-ATT
*
76006 ATATTTATATAATTAAATACT
1 -TATTTATATAATTAAATATT
76027 TATTTA
1 TATTTA
76033 ATTTAATAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 23
0.71 0.07 0.22
Matches are distributed among these distances:
19 7 0.09
20 21 0.28
21 11 0.15
22 20 0.27
23 2 0.03
24 3 0.04
25 6 0.08
26 5 0.07
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTATATAATTAAATATT
Found at i:76034 original size:16 final size:16
Alignment explanation
Indices: 75964--76040 Score: 54
Period size: 16 Copynumber: 5.0 Consensus size: 16
75954 TAAAATTTAT
*
75964 CTTATATAATTAACTA
1 CTTATATAATTAAATA
* *
75980 ATTAT-TAATTAATTAA
1 CTTATATAATTAAAT-A
*
75996 ATTA-ATAATT--ATA
1 CTTATATAATTAAATA
*
76009 TTTATATAATTAAATA
1 CTTATATAATTAAATA
* *
76025 CTTATTTAATTTAATA
1 CTTATATAATTAAATA
76041 ACAATTATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
13 4 0.08
14 7 0.14
15 8 0.16
16 30 0.61
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (16 bp):
CTTATATAATTAAATA
Found at i:76060 original size:23 final size:22
Alignment explanation
Indices: 76033--76087 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
76023 TACTTATTTA
* *
76033 ATTTAATAACAATTATTACTAAT
1 ATTTAATAACAATTA-AAATAAT
* *
76056 ATTTATATAATATTTAAAATAAT
1 ATTTA-ATAACAATTAAAATAAT
76079 ATTTAATAA
1 ATTTAATAA
76088 TATAAACATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 4 0.15
23 15 0.56
24 8 0.30
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTTAATAACAATTAAAATAAT
Found at i:76065 original size:48 final size:45
Alignment explanation
Indices: 75917--76066 Score: 130
Period size: 45 Copynumber: 3.3 Consensus size: 45
75907 AAATATAAAT
* * *
75917 TAATATTTATATAATTAAA-ATTTA-T-CTTATATATAATTAA-AA
1 TAATATTTATATAATTAAATAATTATTAATTA-ATAAAATTAATAA
* * *
75959 T-TTATCTTATATAATTAACTAATTATTAATTAATTAAATTAATAA
1 TAATAT-TTATATAATTAAATAATTATTAATTAATAAAATTAATAA
* * * *
76004 TTATATTTATATAATTAAATACTTATTTAATTTAATAACAATTATTAC
1 TAATATTTATATAATTAAATAATTA-TTAA-TTAATAA-AATTAATAA
76052 TAATATTTATATAAT
1 TAATATTTATATAAT
76067 ATTTAAAATA
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
41 3 0.03
42 13 0.15
43 4 0.05
44 9 0.10
45 23 0.27
46 7 0.08
47 6 0.07
48 21 0.24
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (45 bp):
TAATATTTATATAATTAAATAATTATTAATTAATAAAATTAATAA
Found at i:76076 original size:9 final size:11
Alignment explanation
Indices: 76052--76090 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
76042 CAATTATTAC
76052 TAATATTTATA
1 TAATATTTATA
*
76063 TAATATTTAAAA
1 TAATATTT-ATA
76075 TAATATTTA-A
1 TAATATTTATA
76085 TAATAT
1 TAATAT
76091 AAACATACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 7 0.27
11 9 0.35
12 10 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TAATATTTATA
Found at i:76329 original size:14 final size:15
Alignment explanation
Indices: 76291--76346 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 15
76281 GACTAGAATA
*
76291 ATATAA-TATATTATG
1 ATATAATTA-ATTATT
76306 ATAATAATTAATTATT
1 AT-ATAATTAATTATT
76322 AT-TAATTAA-TATT
1 ATATAATTAATTATT
*
76335 TTATAATTAATT
1 ATATAATTAATT
76347 TATAATTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
13 5 0.14
14 14 0.40
15 3 0.09
16 11 0.31
17 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATAATTAATTATT
Found at i:76338 original size:18 final size:18
Alignment explanation
Indices: 76317--76360 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
76307 TAATAATTAA
*
76317 TTATTATTAATTAATATT
1 TTATTATTAATTAATAAT
* *
76335 TTATAATTAATTTATAAT
1 TTATTATTAATTAATAAT
76353 TTA-TATTA
1 TTATTATTA
76361 TAAAGTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATTATTAATTAATAAT
Found at i:76387 original size:29 final size:32
Alignment explanation
Indices: 76354--76415 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 32
76344 ATTTATAATT
76354 TATATTATAAAGTATT-A-AATATAA-TAAAA
1 TATATTATAAAGTATTAATAATATAATTAAAA
* *
76383 TATATTATGAATTATTAATAATATAATTAAAA
1 TATATTATAAAGTATTAATAATATAATTAAAA
76415 T
1 T
76416 GTTTAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 14 0.50
30 1 0.04
31 7 0.25
32 6 0.21
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (32 bp):
TATATTATAAAGTATTAATAATATAATTAAAA
Found at i:77754 original size:20 final size:20
Alignment explanation
Indices: 77706--77762 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
77696 TATAGTCAAA
* *
77706 TATATAAATACTTTACTAAAT
1 TATATTAATAATTTA-TAAAT
*
77727 T-TAATAATAATTTATAAAT
1 TATATTAATAATTTATAAAT
*
77746 TATATTAATAATCTATA
1 TATATTAATAATTTATA
77763 TATATTATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 6 0.20
20 23 0.77
21 1 0.03
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
TATATTAATAATTTATAAAT
Found at i:77871 original size:33 final size:33
Alignment explanation
Indices: 77800--77875 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
77790 TCTATTTTAT
** *
77800 TAATAATA-TTAGTTATTATTAATTTTAACATA
1 TAATAATATTTAAATATTATTAATTATAACATA
77832 TAATAATATTTAAATATTATTAACTTATATA-ATA
1 TAATAATATTTAAATATTATTAA-TTATA-ACATA
77866 T-ATAATATTT
1 TAATAATATTT
77876 TATATAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
32 8 0.21
33 21 0.55
34 8 0.21
35 1 0.03
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (33 bp):
TAATAATATTTAAATATTATTAATTATAACATA
Found at i:77888 original size:26 final size:26
Alignment explanation
Indices: 77824--77900 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 26
77814 ATTATTAATT
* *
77824 TTAACATATAATAATATTTAAATATTA
1 TTAACTTAT-ATAATATATAAATATTA
*
77851 TTAACTTATATAATATATAATATTTTA
1 TTAACTTATATAATATATAA-ATATTA
* *
77878 TATAATTTATAAAATATA-AAATA
1 T-TAACTTATATAATATATAAATA
77901 ATACAATTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
26 12 0.29
27 16 0.38
28 14 0.33
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (26 bp):
TTAACTTATATAATATATAAATATTA
Found at i:78187 original size:14 final size:14
Alignment explanation
Indices: 78142--78205 Score: 51
Period size: 14 Copynumber: 4.5 Consensus size: 14
78132 TTAATATTAG
*
78142 TTAATATTATAA-G
1 TTAATATTATAACC
* **
78155 TATAAAATTATAAAT
1 T-TAATATTATAACC
78170 TTAATATTATAACC
1 TTAATATTATAACC
78184 TTAACTATTA-ATACC
1 TTAA-TATTATA-ACC
78199 TTAATAT
1 TTAATAT
78206 AATTATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
13 1 0.02
14 28 0.67
15 13 0.31
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.44
Consensus pattern (14 bp):
TTAATATTATAACC
Done.