Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168382.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_60, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 143073
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 3 of 4
Found at i:78563 original size:29 final size:29
Alignment explanation
Indices: 78513--78569 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
78503 ATTCTCTTCT
*
78513 TAGTTATTTTTAATTATAAAAATAATTAA
1 TAGTTATTTATAATTATAAAAATAATTAA
*
78542 TAGTTATTTATAGTT-TATAAAATAATTA
1 TAGTTATTTATAATTATA-AAAATAATTA
78570 TTATAACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (29 bp):
TAGTTATTTATAATTATAAAAATAATTAA
Found at i:78692 original size:16 final size:17
Alignment explanation
Indices: 78673--78719 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
78663 TTATTCATAA
78673 AACTAATTA-TAATTAT
1 AACTAATTATTAATTAT
78689 AACTAATTATTAATTA-
1 AACTAATTATTAATTAT
78705 AA-T-ATT-TTAATTAT
1 AACTAATTATTAATTAT
78719 A
1 A
78720 TTATTAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.24
14 4 0.14
15 1 0.03
16 11 0.38
17 6 0.21
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
AACTAATTATTAATTAT
Found at i:78765 original size:29 final size:30
Alignment explanation
Indices: 78705--78835 Score: 82
Period size: 29 Copynumber: 4.5 Consensus size: 30
78695 TTATTAATTA
*
78705 AATATTTTAATTATATTATTAATAAATCAT
1 AATATATTAATTATATTATTAATAAATCAT
* *
78735 AATATATTATATTATA-T-TTAATAATTTAT
1 AATATATTA-ATTATATTATTAATAAATCAT
*
78764 AATATA--AATTATA-AATTAAT---T-AT
1 AATATATTAATTATATTATTAATAAATCAT
* * *
78787 AAAATATTAATTAATAATAATTAATTATTATCAT
1 AATATATTAATT-AT-ATTATTAA-TA-AATCAT
78821 AATATATTATATTAT
1 AATATATTA-ATTAT
78836 TCTAGTCATA
Statistics
Matches: 81, Mismatches: 6, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
23 7 0.09
24 1 0.01
25 4 0.05
26 8 0.10
27 7 0.09
28 6 0.07
29 17 0.21
30 9 0.11
31 6 0.07
33 1 0.01
34 12 0.15
35 3 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.49
Consensus pattern (30 bp):
AATATATTAATTATATTATTAATAAATCAT
Found at i:78770 original size:12 final size:13
Alignment explanation
Indices: 78756--78812 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 13
78746 TTATATTTAA
78756 TAATTTATAATA-
1 TAATTTATAATAT
*
78768 TAAATTATAA-AT
1 TAATTTATAATAT
*
78780 TAATTATAAAATAT
1 TAATT-TATAATAT
*
78794 TAATTAATAATAAT
1 TAATTTATAAT-AT
78808 TAATT
1 TAATT
78813 ATTATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
11 1 0.03
12 13 0.36
13 8 0.22
14 14 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATTTATAATAT
Found at i:78789 original size:18 final size:18
Alignment explanation
Indices: 78766--78806 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
78756 TAATTTATAA
*
78766 TATAAATTATAAATTAAT
1 TATAAAATATAAATTAAT
*
78784 TATAAAATATTAATTAAT
1 TATAAAATATAAATTAAT
*
78802 AATAA
1 TATAA
78807 TTAATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATAAAATATAAATTAAT
Found at i:78998 original size:8 final size:8
Alignment explanation
Indices: 78970--79011 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
78960 CTATTATAGT
78970 TAATATTA
1 TAATATTA
*
78978 TCAA-ATAA
1 T-AATATTA
78986 TAATATTA
1 TAATATTA
78994 TAATAGTTA
1 TAATA-TTA
79003 TAATATTA
1 TAATATTA
79011 T
1 T
79012 CAAGTTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
7 2 0.07
8 17 0.59
9 10 0.34
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (8 bp):
TAATATTA
Found at i:79019 original size:16 final size:16
Alignment explanation
Indices: 78970--79019 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
78960 CTATTATAGT
* *
78970 TAATATTATCAAATAA
1 TAATATTATCAAGTTA
*
78986 TAATATTATAATAGTTA
1 TAATATTATCA-AGTTA
79003 TAATATTATCAAGTTA
1 TAATATTATCAAGTTA
79019 T
1 T
79020 TATACCATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 16 0.55
17 13 0.45
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (16 bp):
TAATATTATCAAGTTA
Found at i:79305 original size:22 final size:22
Alignment explanation
Indices: 79261--79363 Score: 61
Period size: 22 Copynumber: 4.7 Consensus size: 22
79251 TTAAAGGTTA
*
79261 TTAATTATTAAATATAATATAT
1 TTAATTATTAAATAAAATATAT
*
79283 TTAATTGATTACATAAAAT-TA-
1 TTAATT-ATTAAATAAAATATAT
** * *
79304 TTATATTAAAAAATACAATATTAA
1 TTA-ATTATTAAATAAAATA-TAT
*
79328 TT-A-TATTAATATTAAATATAT
1 TTAATTATTAA-ATAAAATATAT
* *
79349 TAAATTGTTAAATAA
1 TTAATTATTAAATAA
79364 TTATTAATTT
Statistics
Matches: 59, Mismatches: 14, Indels: 16
0.66 0.16 0.18
Matches are distributed among these distances:
21 18 0.31
22 22 0.37
23 17 0.29
24 2 0.03
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
TTAATTATTAAATAAAATATAT
Found at i:79312 original size:26 final size:23
Alignment explanation
Indices: 79259--79312 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
79249 AATTAAAGGT
*
79259 TATTAATTATTAAATATAATATA
1 TATTAATTATTAAATAAAATATA
*
79282 T-TTAATTGATTACATAAAATTATTA
1 TATTAATT-ATTAAATAAAA-TA-TA
79307 TATTAA
1 TATTAA
79313 AAAATACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 6 0.24
23 10 0.40
24 2 0.08
25 3 0.12
26 4 0.16
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TATTAATTATTAAATAAAATATA
Found at i:79338 original size:15 final size:15
Alignment explanation
Indices: 79259--79351 Score: 56
Period size: 15 Copynumber: 6.4 Consensus size: 15
79249 AATTAAAGGT
79259 TATTAATTATTAAATA
1 TATTAA-TATTAAATA
* *
79275 TAAT-ATATTTAAT-
1 TATTAATATTAAATA
79288 TGATTACATA--AAAT-
1 T-ATTA-ATATTAAATA
79302 TATT-ATATTAAA-A
1 TATTAATATTAAATA
* * *
79315 AATACAATATTAATTA
1 TAT-TAATATTAAATA
79331 TATTAATATTAAATA
1 TATTAATATTAAATA
79346 TATTAA
1 TATTAA
79352 ATTGTTAAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 19
0.67 0.11 0.22
Matches are distributed among these distances:
11 3 0.05
13 9 0.16
14 13 0.22
15 24 0.41
16 9 0.16
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (15 bp):
TATTAATATTAAATA
Found at i:79370 original size:19 final size:19
Alignment explanation
Indices: 79346--79389 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
79336 ATATTAAATA
79346 TATTAAATTGTTAAATAAT
1 TATTAAATTGTTAAATAAT
* * * *
79365 TATTAATTTTTTTATTAAT
1 TATTAAATTGTTAAATAAT
79384 TATTAA
1 TATTAA
79390 TACTAATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTAAATTGTTAAATAAT
Found at i:79413 original size:26 final size:22
Alignment explanation
Indices: 79376--79425 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
79366 ATTAATTTTT
79376 TTATTAATTATTAATACTAATATA
1 TTATTAATTATTAATA-TAA-ATA
79400 TTATTATATCTATTAATATAAATA
1 TTATTA-AT-TATTAATATAAATA
79424 TT
1 TT
79426 TCACATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 11 0.46
25 5 0.21
26 8 0.33
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATTAATTATTAATATAAATA
Found at i:79594 original size:41 final size:40
Alignment explanation
Indices: 79513--79594 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 40
79503 TTATAAAATA
* *
79513 ATATTTTATTAATTTATTAATAGTATTTATTAATATTAATT
1 ATATTTTATT-ATTTAGTAATAGTATTTATTAATAGTAATT
79554 ATATTTTATT-TGTTAGTAATA-TATTATATTATATAGTAATT
1 ATATTTTATTAT-TTAGTAATAGTATT-TATTA-ATAGTAATT
79595 TAATTGTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
39 5 0.14
40 13 0.36
41 18 0.50
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (40 bp):
ATATTTTATTATTTAGTAATAGTATTTATTAATAGTAATT
Found at i:79658 original size:15 final size:16
Alignment explanation
Indices: 79638--79683 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
79628 TAAATAAATT
*
79638 ATATTATTAAT-TTAA
1 ATATTAATAATATTAA
79653 ATATTAATAATATT-A
1 ATATTAATAATATTAA
*
79668 ATAATTAATATTATTA
1 AT-ATTAATAATATTA
79684 TTTGATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATATTAA
Found at i:79692 original size:23 final size:24
Alignment explanation
Indices: 79666--79716 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
79656 TTAATAATAT
*
79666 TAATAATTAA-TATTATT-ATTTGA
1 TAATAATTAACTA-TATTAATTTAA
79689 TAAT-ATTAACTATATTAATTTAA
1 TAATAATTAACTATATTAATTTAA
79712 TAATA
1 TAATA
79717 TATATCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
TAATAATTAACTATATTAATTTAA
Found at i:80759 original size:181 final size:179
Alignment explanation
Indices: 80139--80760 Score: 405
Period size: 181 Copynumber: 3.5 Consensus size: 179
80129 AACTAATAGT
* * * * * *
80139 AATAAAATAATACTATTTTATTACTATTTTGAAAA-T-TAA-TAAGAGATTTAAAAACTAAATCT
1 AATAAAATAATACTAATTTATTAATATTATAAAAATTATAAGTAAGAGATTTAAAAAATAAA-CA
* * * * ** * * * * *
80201 CTTTACCAAATCAGTTCAAATAGTTATGACTATTTGAACAATTATCT-GTCTCCAATTGATATGA
65 GTTTATCGAATCAATTCAAATAGTTAAAACTATTAGAACAATTATCTAAT-TCAAATCGTTATGA
* * * * * **** * * *
80265 -TTTTTTTTTA-TCCTAAAACATTTAGTTTTTGTTCA-ACAAGCTTATTCAG
129 CCTTTTGTTTAGTCATAAAACAATT-GCTTCAACTCATAAAAACTTATTCAA
* * * * * * *
80314 AGTAAAATATTGCTAAATTAATAATATTCTAAAAATTAATAAGTAAG-GATTTAAAAAATAAA-T
1 AATAAAATAATACTAATTTATTAATATTATAAAAATT-ATAAGTAAGAGATTTAAAAAATAAACA
* * * * *
80377 GTTTGTTGAATCAATTCAAATAGTTAAAACTATTAGAACAATTATTTATTTCAAATCGTTTTGAC
65 GTTTATCGAATCAATTCAAATAGTTAAAACTATTAGAACAATTATCTAATTCAAATCGTTATGAC
* * **
80442 CTTTTGTTTAGTCATAAAATAATTGCTTCAACTCATACATGCTTATTCAA
130 CTTTTGTTTAGTCATAAAACAATTGCTTCAACTCATAAAAACTTATTCAA
* * *
80492 AATAAAATAATACTAATTTATTAACATTCA-AAAAATTATTAAGTAAGA-AATTAGAAAAAAAAA
1 AATAAAATAATACTAATTTATTAATATT-ATAAAAATTA-TAAGTAAGAGATTTA-AAAAATAAA
* * * *** * *
80555 TCTA-TTTA-CAAAACAAGTTCAAATATTTTTGACTGTTTGAACAATTATCTAATT-AATATCGT
63 -C-AGTTTATCGAATCAA-TTCAAATAGTTAAAACTATTAGAACAATTATCTAATTCAA-ATCGT
* ** *
80617 TATGACCTTATAT-TTTA-TCATAAAACAATTGTTTCAGTTCATAAAAACTTA-TCTGA
124 TATGACCTT-T-TGTTTAGTCATAAAACAATTGCTTCAACTCATAAAAACTTATTC-AA
* * * *
80673 AATAAAATAATATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAACC
1 AATAAAATAATACTAATTTATTAATATTATAAAAATT-ATAAGTAAGAGATTTAAAAAATAAA-C
80738 AGTTTATCGAATCAATTCAAATA
64 AGTTTATCGAATCAATTCAAATA
80761 ATTATAATAA
Statistics
Matches: 344, Mismatches: 78, Indels: 44
0.74 0.17 0.09
Matches are distributed among these distances:
175 26 0.08
176 49 0.14
177 16 0.05
178 80 0.23
179 12 0.03
180 11 0.03
181 133 0.39
182 16 0.05
183 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (179 bp):
AATAAAATAATACTAATTTATTAATATTATAAAAATTATAAGTAAGAGATTTAAAAAATAAACAG
TTTATCGAATCAATTCAAATAGTTAAAACTATTAGAACAATTATCTAATTCAAATCGTTATGACC
TTTTGTTTAGTCATAAAACAATTGCTTCAACTCATAAAAACTTATTCAA
Found at i:80812 original size:17 final size:16
Alignment explanation
Indices: 80786--80818 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
80776 TCCATAGTGG
80786 TTATATTATATATTTA
1 TTATATTATATATTTA
80802 TTATAATTATATATTTA
1 TTAT-ATTATATATTTA
80819 CAATAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATATTATATATTTA
Found at i:80824 original size:17 final size:17
Alignment explanation
Indices: 80790--80824 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
80780 TAGTGGTTAT
**
80790 ATTATATATTTATTATA
1 ATTATATATTTACAATA
80807 ATTATATATTTACAATA
1 ATTATATATTTACAATA
80824 A
1 A
80825 AATAATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTATATATTTACAATA
Found at i:80975 original size:23 final size:25
Alignment explanation
Indices: 80927--80976 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
80917 TTAATTAAAA
*
80927 TATAAATATTTAATTAAATTATTAT
1 TATAAATACTTAATTAAATTATTAT
*
80952 TATAAATACTT-A-TAATTTATTAT
1 TATAAATACTTAATTAAATTATTAT
80975 TA
1 TA
80977 ATTATCTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
24 1 0.04
25 10 0.43
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATAAATACTTAATTAAATTATTAT
Found at i:80995 original size:26 final size:27
Alignment explanation
Indices: 80966--81032 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
80956 AATACTTATA
80966 ATTTATTATTAATTATCTGAA-TATTG
1 ATTTATTATTAATTATCTGAATTATTG
* * * *
80992 ATTTTAGT-TTAAATATTTTAATTATTG
1 A-TTTATTATTAATTATCTGAATTATTG
81019 ATTT-TTATTAATTA
1 ATTTATTATTAATTA
81033 ATAGATATCT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
25 1 0.03
26 20 0.62
27 11 0.34
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.58
Consensus pattern (27 bp):
ATTTATTATTAATTATCTGAATTATTG
Found at i:80997 original size:27 final size:29
Alignment explanation
Indices: 80967--81034 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 29
80957 ATACTTATAA
80967 TTTATTATTAATTATCTGAA-TATTGA-T
1 TTTATTATTAATTATCTGAATTATTGATT
* * * *
80994 TTTAGT-TTAAATATTTTAATTATTGATT
1 TTTATTATTAATTATCTGAATTATTGATT
81022 TTTATTAATTAAT
1 TTTATT-ATTAAT
81035 AGATATCTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 6 0.19
30 4 0.13
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (29 bp):
TTTATTATTAATTATCTGAATTATTGATT
Found at i:81805 original size:372 final size:358
Alignment explanation
Indices: 81131--82014 Score: 904
Period size: 372 Copynumber: 2.4 Consensus size: 358
81121 TATGGACAAA
* * * * * * *
81131 AACATTTGTTTTATAACAAAACAAAAGGTCATAATTATTTGAAATAAATAATTGTTCAAATAATC
1 AACAATTGTTTTATGACAAAAAAAAAGGTCATAATAATTTTAAATAGATAATTGTTCAAATAGTC
* * * * *
81196 ATAATTATTTAAACTAGTTAGGTAAGCAAAA-TTATTTGTTAAATC-TCTTATTAATTTTTGAAA
66 ATAACTATTTAAACTAGTTCGATAA-AAAAATTTATTTTTTAAATCTTCTTATTAATTTTTGAAA
* * ** *
81259 TATTAATAAATTCA-TTTTATTTTATTTTGAATAACTAGTATGAATTGAAAAAATTATTGTATGA
130 TATTAATAAATT-AGTATTATTTTATTCTGAATAACTAGTATGAATAAAAAAAATTATTATATGA
* * * * * *
81323 CAAAATAAAAGGTCATAACGATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTAAACTG
194 CAAAACAAAAGGTAATAACGATTTAAAATAGATAATTGTTCAAATAGCCATAACTATTTAAACTA
* * * * * * * *
81388 GTCCAGCAAATAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTT-AAAGTATTATTAGATTA
259 ATCCAGCAAACAAAATCATTTTTTAAATCACTTACTTATTAATTTTTGAAA-TATTAATAAATTA
* *
81452 GTATTATTTTATTTCGAATAAGCTTGTATGAAAAT-G
323 CTATTATTTTATTTCAAATAAGCTTGTATG-AAATGG
* * *
81488 AATAATTGTTTTATGACAGAACAAAAAAGGTTTATTTTTTAAATAACTAATTTAAAT-TATACAT
1 AACAATTGTTTTATGACA-AA-AAAAAAGG-TCA-----T-AATAA-T--TTTAAATAGATA-A-
** *
81552 TTGTTCAAATAGTCATAACTATTTAAACGGGTTCGATAAATAAATTTATTTTTTAAATTTCTTAC
52 TTGTTCAAATAGTCATAACTATTTAAACTAGTTCGATAAAAAAATTTATTTTTTAAA--TCTT-C
* * * *
81617 TTATTAACTTTTGAAAGATTAATAAATTAGTATTATTTTATTCTG-A-AGCTTGTATG-ATAAAA
114 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAATAACTAGTATGAATAAAA
* * ** * *
81679 AACAATTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAATTGTTGAAATAGCC
179 AA-AATTATTATATGACAAAACAAAAGGTAATAACGATTTAAAATAGATAATTGTTCAAATAGCC
* * * * * *
81744 ATAATTATTTGAACTAATTCGGTAAACAAAATCATTTTTTAAATCACTTACTTATTAATTTTTGG
243 ATAACTATTTAAACTAATCCAGCAAACAAAATCATTTTTTAAATCACTTACTTATTAATTTTTGA
*
81809 AATATTAATAAATTACTATTATTTTATTTCAAATAAGCTTGTATGAACTGG
308 AATATTAATAAATTACTATTATTTTATTTCAAATAAGCTTGTATGAAATGG
* * *
81860 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTGTTTAAATAGTC
1 AACAATTGTTTTATGACAAAAAAAAAGGTCATAATAATTTTAAATAGATAATTGTTCAAATAGTC
* * * *
81925 ATAACTATTTAAGCTTGTTCAATAAAAAAATTAATTTTTTAAAACTCTTTCTTATTAATTTTTGA
66 ATAACTATTTAAACTAGTTCGATAAAAAAATTTATTTTTT-AAA-TC-TTCTTATTAATTTTTGA
*
81990 AATATTAAGAAATTAGTATTATTTT
128 AATATTAATAAATTAGTATTATTTT
82015 TATTTTGGAT
Statistics
Matches: 430, Mismatches: 71, Indels: 50
0.78 0.13 0.09
Matches are distributed among these distances:
357 15 0.03
358 2 0.00
359 93 0.22
360 15 0.03
361 3 0.01
362 1 0.00
363 4 0.01
364 1 0.00
365 1 0.00
366 4 0.01
367 1 0.00
368 3 0.01
369 12 0.03
370 51 0.12
371 11 0.03
372 168 0.39
373 5 0.01
374 40 0.09
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (358 bp):
AACAATTGTTTTATGACAAAAAAAAAGGTCATAATAATTTTAAATAGATAATTGTTCAAATAGTC
ATAACTATTTAAACTAGTTCGATAAAAAAATTTATTTTTTAAATCTTCTTATTAATTTTTGAAAT
ATTAATAAATTAGTATTATTTTATTCTGAATAACTAGTATGAATAAAAAAAATTATTATATGACA
AAACAAAAGGTAATAACGATTTAAAATAGATAATTGTTCAAATAGCCATAACTATTTAAACTAAT
CCAGCAAACAAAATCATTTTTTAAATCACTTACTTATTAATTTTTGAAATATTAATAAATTACTA
TTATTTTATTTCAAATAAGCTTGTATGAAATGG
Found at i:81914 original size:181 final size:180
Alignment explanation
Indices: 81552--82081 Score: 543
Period size: 181 Copynumber: 2.9 Consensus size: 180
81542 AATTATACAT
* * * *** * * * *
81552 TTGTTCAAATAGTCATAACTATTTAAACGGGTTCGATAAATAAATTTATTTTTTAAATTTCTTAC
1 TTGTTGAAATAGCCATAACTATTTAAGCTAATTCAATAAAAAAATTAATTTTTTAAATCTCTTAC
* * * **
81617 TTATTAACTTTTGAAAGATTAATAAATTAGTATTATTTTA-TTC-TGAAGCTTGTATGATA-AAA
66 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAT-AAGCTTGTATGAGACTGA
* * *
81679 AACAATTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAA
130 AACAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTCAAATAGATAA
* ** * *
81730 TTGTTGAAATAGCCATAATTATTTGAA-CTAATTCGGTAAACAAAA-TCATTTTTTAAATCACTT
1 TTGTTGAAATAGCCATAACTATTT-AAGCTAATTCAATAAA-AAAATTAATTTTTTAAATCTCTT
* *
81793 ACTTATTAATTTTTGGAATATTAATAAATTACTATTATTTTATTTCAAATAAGCTTGTATGA-AC
64 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC--ATAAGCTTGTATGAGAC
* * *
81857 TGGAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
127 TGAAACAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTCAAATAGATAA
* * ** * *
81911 TTGTTTAAATAGTCATAACTATTTAAGCTTGTTCAATAAAAAAATTAATTTTTTAAAACTCTTTC
1 TTGTTGAAATAGCCATAACTATTTAAGCTAATTCAATAAAAAAATTAATTTTTTAAATCTCTTAC
* * * *
81976 TTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTTATTTTGGATAAGTTTTTAT-AGACT
66 TTATTAATTTTTGAAATATTAATAAATTAGTATTA-TTTTA-TTT-CATAAGCTTGTATGAGACT
* * * * * *
82040 GAAACAATTTTTTTTTGTCAAAATAAAAGGTTATAACGATTT
128 GAAACAATTGTTTTATGACAAAACAAAAGGTAATAATGATTT
82082 GACTTGATCA
Statistics
Matches: 292, Mismatches: 47, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
178 83 0.28
179 8 0.03
180 7 0.02
181 137 0.47
182 54 0.18
183 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
TTGTTGAAATAGCCATAACTATTTAAGCTAATTCAATAAAAAAATTAATTTTTTAAATCTCTTAC
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCATAAGCTTGTATGAGACTGAA
ACAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTCAAATAGATAA
Found at i:82183 original size:14 final size:14
Alignment explanation
Indices: 82146--82189 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
82136 GAATGTTAAT
*
82146 AATTAAAATTTTTAA
1 AATTAAAATATTT-A
*
82161 AATTTAAATATTTA
1 AATTAAAATATTTA
82175 AATTAAAATATTTA
1 AATTAAAATATTTA
82189 A
1 A
82190 TTTTTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:82195 original size:29 final size:27
Alignment explanation
Indices: 82145--82216 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 27
82135 TGAATGTTAA
*
82145 TAATTAAAATTTTTAAAATTTAAATATT
1 TAATTAAAATATTTAAAATTT-AATATT
** *
82173 TAAATTAAAATATTTAATTTTTATTATT
1 T-AATTAAAATATTTAAAATTTAATATT
*
82201 TAATTATCAATATTTA
1 TAATTA-AAATATTTA
82217 TTAATAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 5 0.14
28 15 0.41
29 17 0.46
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (27 bp):
TAATTAAAATATTTAAAATTTAATATT
Found at i:82214 original size:14 final size:14
Alignment explanation
Indices: 82161--82226 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 14
82151 AAATTTTTAA
82161 AATT-TAAATATTT
1 AATTATAAATATTT
82174 AAATTA-AAATATTT
1 -AATTATAAATATTT
* * *
82188 AATTTTTATTATTT
1 AATTATAAATATTT
*
82202 AATTATCAATATTT
1 AATTATAAATATTT
82216 -ATTAATAAATA
1 AATT-ATAAATA
82227 AGCTATGAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
13 7 0.17
14 35 0.83
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (14 bp):
AATTATAAATATTT
Found at i:82403 original size:19 final size:18
Alignment explanation
Indices: 82351--82403 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
82341 AGATAATAAT
82351 TATTATT-AATATAATTA
1 TATTATTAAATATAATTA
*
82368 -ATTATTAACTAT--TTA
1 TATTATTAAATATAATTA
82383 TATTATTAAATATAATGTA
1 TATTATTAAATATAAT-TA
82402 TA
1 TA
82404 AGATATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.10
16 17 0.59
17 4 0.14
18 1 0.03
19 4 0.14
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTATTAAATATAATTA
Found at i:82748 original size:26 final size:26
Alignment explanation
Indices: 82696--82757 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
82686 GAGATTTATA
*
82696 AATTTATATAATAAATTATTAAGTATT
1 AATTTAT-TAATAAATAATTAAGTATT
*
82723 AATTTATTTATAATATAATTAA-TATT
1 AATTTATTAATAA-ATAATTAAGTATT
*
82749 ATTTTATTA
1 AATTTATTA
82758 GATTATTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
AATTTATTAATAAATAATTAAGTATT
Found at i:83014 original size:15 final size:13
Alignment explanation
Indices: 82981--83007 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82971 TTGGAACAAT
82981 TATATATTTTCAA
1 TATATATTTTCAA
82994 TATATATTTTCAA
1 TATATATTTTCAA
83007 T
1 T
83008 CGTTATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATATTTTCAA
Found at i:83637 original size:41 final size:41
Alignment explanation
Indices: 83553--83639 Score: 99
Period size: 41 Copynumber: 2.1 Consensus size: 41
83543 AGTTTAAGAT
* *
83553 TATTACTAATTATTATAGTACTTATAATTAATTATTATTAA
1 TATTACTAATTATTATACTACTTATAATTAATTATTATCAA
*
83594 TATTACTTAATTA-TATACTA-TTATTATTATATGTATTA-CAA
1 TATTAC-TAATTATTATACTACTTATAATTA-AT-TATTATCAA
83635 TATTA
1 TATTA
83640 TAAGTAATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 8 0.20
41 21 0.52
42 11 0.28
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (41 bp):
TATTACTAATTATTATACTACTTATAATTAATTATTATCAA
Found at i:83640 original size:17 final size:18
Alignment explanation
Indices: 83618--83659 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
83608 ATACTATTAT
83618 TATTATATGT-ATTACAA
1 TATTATATGTAATTACAA
* *
83635 TATTATAAGTAATTATAA
1 TATTATATGTAATTACAA
83653 T-TTATAT
1 TATTATAT
83660 AAAATAGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (18 bp):
TATTATATGTAATTACAA
Found at i:83792 original size:22 final size:22
Alignment explanation
Indices: 83762--83803 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
83752 TTAAATAAAT
*
83762 ATTATTAATTAAATTATTATAC
1 ATTAATAATTAAATTATTATAC
* *
83784 ATTAATAATTTATTTATTAT
1 ATTAATAATTAAATTATTAT
83804 TGTTATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTAATAATTAAATTATTATAC
Found at i:83871 original size:18 final size:19
Alignment explanation
Indices: 83845--83891 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
83835 TATATAAATA
83845 AAATT-TAATTG-TTAGAT
1 AAATTATAATTGTTTAGAT
*
83862 AAATTATAATTGTTTATAT
1 AAATTATAATTGTTTAGAT
*
83881 AATTTATAATT
1 AAATTATAATT
83892 TGCTTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 5 0.19
18 6 0.23
19 15 0.58
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (19 bp):
AAATTATAATTGTTTAGAT
Found at i:83900 original size:20 final size:19
Alignment explanation
Indices: 83850--83903 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
83840 AAATAAAATT
* *
83850 TAATTG-TTAGATAAATTA
1 TAATTGCTTATATAATTTA
*
83868 TAATTGTTTATATAATTTA
1 TAATTGCTTATATAATTTA
83887 TAATTTGCTTATATAAT
1 TAA-TTGCTTATATAAT
83904 AGAATAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 6 0.19
19 13 0.42
20 12 0.39
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (19 bp):
TAATTGCTTATATAATTTA
Found at i:83946 original size:15 final size:14
Alignment explanation
Indices: 83920--83955 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
83910 ATATTAAATA
83920 TATTAATAATATAT
1 TATTAATAATATAT
*
83934 TTTTAATAGATATAT
1 TATTAATA-ATATAT
83949 TATTAAT
1 TATTAAT
83956 TATAATTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
TATTAATAATATAT
Found at i:84038 original size:25 final size:26
Alignment explanation
Indices: 84008--84065 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
83998 TTATTTAATC
*
84008 TTAATAATTGTTTCA-AT-CAAAATTA
1 TTAATAATTATTTCATATAC-AAATTA
84033 TTAATAATTATTTCATATACAAATTA
1 TTAATAATTATTTCATATACAAATTA
84059 TTAATAA
1 TTAATAA
84066 CAATTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 14 0.47
26 15 0.50
27 1 0.03
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.45
Consensus pattern (26 bp):
TTAATAATTATTTCATATACAAATTA
Found at i:84063 original size:26 final size:25
Alignment explanation
Indices: 84008--84065 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
83998 TTATTTAATC
*
84008 TTAATAATTGTTTCAATCAAAATTA
1 TTAATAATTATTTCAATCAAAATTA
84033 TTAATAATTATTTCATAT-ACAAATTA
1 TTAATAATTATTTCA-ATCA-AAATTA
84059 TTAATAA
1 TTAATAA
84066 CAATTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.45
Consensus pattern (25 bp):
TTAATAATTATTTCAATCAAAATTA
Found at i:84297 original size:16 final size:17
Alignment explanation
Indices: 84276--84307 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
84266 TAATCAATTG
84276 TTATATATAT-ACATAA
1 TTATATATATAACATAA
84292 TTATATATATAACATA
1 TTATATATATAACATA
84308 TGCTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATATATATAACATAA
Found at i:84669 original size:19 final size:19
Alignment explanation
Indices: 84645--84683 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
84635 GCCTTCTCAA
*
84645 TTAAA-TATTTATATTATAT
1 TTAAATTATTT-TAATATAT
84664 TTAAATTATTTTAATATAT
1 TTAAATTATTTTAATATAT
84683 T
1 T
84684 AATTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTAAATTATTTTAATATAT
Found at i:84687 original size:17 final size:17
Alignment explanation
Indices: 84644--84703 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
84634 AGCCTTCTCA
* *
84644 ATTAAATATTTATATTAT
1 ATTAATTATTT-TAATAT
84662 ATTTAAATTATTTTAATAT
1 A-TT-AATTATTTTAATAT
*
84681 ATTAATTAATTTAA-AT
1 ATTAATTATTTTAATAT
84697 AATTAAT
1 -ATTAAT
84704 AATGACTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 2 0.06
17 16 0.44
18 3 0.08
19 8 0.22
20 7 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTAATTATTTTAATAT
Found at i:85187 original size:27 final size:27
Alignment explanation
Indices: 85153--85233 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 27
85143 TTAATATGCT
85153 TATTAATAAATTTATTACAATTAAAT-
1 TATTAATAAATTTATTACAATTAAATG
* * *
85179 TAGTTAATAATTTTATAATAATTAAATG
1 TA-TTAATAAATTTATTACAATTAAATG
85207 TATATAATCAAATTATATTACAATTAA
1 TAT-TAAT-AAATT-TATTACAATTAA
85234 TTTATTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 22 0.50
28 6 0.14
29 4 0.09
30 10 0.23
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (27 bp):
TATTAATAAATTTATTACAATTAAATG
Found at i:86523 original size:32 final size:34
Alignment explanation
Indices: 86459--86531 Score: 84
Period size: 32 Copynumber: 2.3 Consensus size: 34
86449 AATACAAACC
* *
86459 ATATTAAAATAATAAATTAATTTATTATTTAATA
1 ATATTAAAATAATAAATTAATTAATTAATTAATA
*
86493 ATATT-AAA-AATAAATTAA-TAATTAA--ATTA
1 ATATTAAAATAATAAATTAATTAATTAATTAATA
86522 ATATTAAAAT
1 ATATTAAAAT
86532 TAAAATCCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
29 8 0.24
30 3 0.09
31 5 0.15
32 10 0.29
33 3 0.09
34 5 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (34 bp):
ATATTAAAATAATAAATTAATTAATTAATTAATA
Found at i:86537 original size:18 final size:18
Alignment explanation
Indices: 86491--86537 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
86481 TATTATTTAA
*
86491 TAAT-ATTAAAAATAAAT
1 TAATAATTAAAATTAAAT
86508 TAATAATT-AAATTAATAT
1 TAATAATTAAAATTAA-AT
86526 TAA-AATTAAAAT
1 TAATAATTAAAAT
86538 CCTTATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATAATTAAAATTAAAT
Found at i:87644 original size:14 final size:14
Alignment explanation
Indices: 87591--87645 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
87581 CTAAAATTAT
87591 ATTAATTAT-TTTA
1 ATTAATTATATTTA
*
87604 TATTAATAATATTCTA
1 -ATTAATTATATT-TA
*
87620 A-TCATTAATATTTA
1 ATTAATT-ATATTTA
87634 ATTAATTATATT
1 ATTAATTATATT
87646 ATCTATATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 19 0.58
15 12 0.36
16 2 0.06
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTAATTATATTTA
Found at i:87669 original size:17 final size:16
Alignment explanation
Indices: 87584--87712 Score: 60
Period size: 15 Copynumber: 7.9 Consensus size: 16
87574 TGTAATACTA
87584 AAATTATATTAATTATTTT
1 AAATTATA-TAA-TA-TTT
*
87603 ATATTA-ATAATATTCT
1 AAATTATATAATATT-T
*
87619 -AATCAT-TAATATTT
1 AAATTATATAATATTT
*
87633 -AATTA-ATTATA-TT
1 AAATTATATAATATTT
87646 --ATCTATATAATATTAT
1 AAAT-TATATAATATT-T
87662 AAATTATATAATAGTTT
1 AAATTATATAATA-TTT
*
87679 GAAAATTATAGTATTAATTT
1 --AAATTATA-TAAT-ATTT
87699 AAATTAT-TAATATT
1 AAATTATATAATATT
87713 ATTAGTTAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 32
0.69 0.06 0.25
Matches are distributed among these distances:
12 2 0.02
13 4 0.05
14 14 0.16
15 16 0.18
16 7 0.08
17 13 0.15
18 12 0.14
19 13 0.15
20 6 0.07
21 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (16 bp):
AAATTATATAATATTT
Found at i:88323 original size:181 final size:178
Alignment explanation
Indices: 88128--88564 Score: 513
Period size: 181 Copynumber: 2.4 Consensus size: 178
88118 ATTATTTGTT
* * *
88128 AAAATAAAATAATACTAATTTCTTAATATTTTGAAAGTTAATAAGCAAGAGTTTTAAAAAATAAA
1 AAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAG-AAGAG-TTTAAAAAATAAA
* * * *
88193 TTTGTTTATCAAATAAATTCAAATAGTTACAACTATTT-AAACAATTGTCTATTTAAAATTGTTA
64 TCTGTTTACCAAATAAATTCAAATAGTTACAACCATTTCAAA-AATTATCTATTTAAAATTGTTA
* * *
88257 TGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTT-ATATAAGCTTATTC
128 TGACCTTTTGTTTGGTCATAAAACAATTGTTT--GTTTCATACAAGCTTATTC
* ** * * * * *
88309 AAAATAAAATAATACCAATTTATTAATATTCCAAAAATGAATAAGTATGTGATTTAAAAAGTGAA
1 AAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAG-AAGAG-TTTAAAAAATAAA
* * * *** *
88374 TCTGTTTACCGAATCAGTTCAAATAGTTATGGCCATTTCAAAAATTATCTATTTCAAATTGTTAT
64 TCTGTTTACCAAATAAATTCAAATAGTTACAACCATTTCAAAAATTATCTATTTAAAATTGTTAT
* * *
88439 TACCTTTTGTTTGGTCATATAACAATTGTTTTTTTACCATACAAGCTTATTC
129 GACCTTTTGTTTGGTCATAAAACAATTGTTTGTTT--CATACAAGCTTATTC
88491 AAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAG-AGA-TTTAAAAAATAAATC
1 AAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGAAGAGTTTAAAAAATAAATC
88554 TGTTTACCAAA
66 TGTTTACCAAA
88565 CTAGTTTATT
Statistics
Matches: 213, Mismatches: 39, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
178 23 0.11
179 3 0.01
180 1 0.00
181 129 0.61
182 57 0.27
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
AAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGAAGAGTTTAAAAAATAAATC
TGTTTACCAAATAAATTCAAATAGTTACAACCATTTCAAAAATTATCTATTTAAAATTGTTATGA
CCTTTTGTTTGGTCATAAAACAATTGTTTGTTTCATACAAGCTTATTC
Found at i:91528 original size:182 final size:179
Alignment explanation
Indices: 91188--91758 Score: 620
Period size: 182 Copynumber: 3.2 Consensus size: 179
91178 CATTAAATTT
* * * * *
91188 TAAATAAATTTATTTTTAAAAT-TTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTAT
1 TAAATAGATTTATTTTTTAAATCTTTTACTTTTTAATTTTTGAAATATTAATAAA-TTATATTAT
* * * * * *
91252 TTTATTTGAAATAAGCTTGAATGAATAGAACCAATTGTTTAATGACAAAACAAAAAGTTGTAATG
65 TTTATTTCAAATAAGC-TAAATGAATAGAAACAATTGTTTTATAACAAAACAAAAAGTTATAATG
* *
91317 TTTTGAAATAAATAATTA-TAAAGATAGTCATAACTATTTGAACTTGTTCGA
129 ATTTGAAATAAATAATTATTCAA-ATAGTCATAACTATTTGAACTTGTTCGA
* *
91368 TAAATAGATTTATTTTTTAAATTCTCTTACTTTTTAATTTTTTAAATATTAATAAATTAGTATTA
1 TAAATAGATTTATTTTTTAAA-TCTTTTACTTTTTAATTTTTGAAATATTAATAAATTA-TATTA
* * * *
91433 TTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAACAAAATGTTACAAT
64 TTTTATTTCAAATAAGCTAA-ATGAATAGAAACAATTGTTTTATAACAAAACAAAAAGTTATAAT
* * * * *
91498 GATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTTGG
128 GATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGA
* * * *
91550 T--A-A-ACTTATTTTTTTAATCTTTTA-TTTATTAATTGTTGAAATATTAATAAATCAATATTA
1 TAAATAGATTTATTTTTTAAATCTTTTACTTT-TTAATTTTTGAAATATTAATAAAT-TATATTA
* * ** * * *
91610 TTTTA-ATCTGAATAAGCTCGTATGGATGGAAACAATTGTTTTATAACAAAACAAAAAAGTCATA
64 TTTTATTTC-AAATAAGCT-AAATGAATAGAAACAATTGTTTTATAACAAAAC-AAAAAGTTATA
* * * *
91674 A-GAATTTGAAATAAATAATTATTCAGATAGTCATAACAATTTGAATTTGTTCAA
126 ATG-ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGA
91728 TAAATAGATTTATTTTTTAAATCTTTTACTT
1 TAAATAGATTTATTTTTTAAATCTTTTACTT
91759 ATTCATTATC
Statistics
Matches: 325, Mismatches: 50, Indels: 29
0.80 0.12 0.07
Matches are distributed among these distances:
176 5 0.02
177 75 0.23
178 65 0.20
179 1 0.00
180 21 0.06
181 7 0.02
182 146 0.45
183 5 0.02
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.43
Consensus pattern (179 bp):
TAAATAGATTTATTTTTTAAATCTTTTACTTTTTAATTTTTGAAATATTAATAAATTATATTATT
TTATTTCAAATAAGCTAAATGAATAGAAACAATTGTTTTATAACAAAACAAAAAGTTATAATGAT
TTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGA
Found at i:91833 original size:9 final size:9
Alignment explanation
Indices: 91813--91841 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
91803 TATAACTAAA
91813 AATTAA-AT
1 AATTAATAT
91821 AATTAATAT
1 AATTAATAT
91830 AATTAATAT
1 AATTAATAT
91839 AAT
1 AAT
91842 ATAACAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTAATAT
Found at i:91867 original size:14 final size:13
Alignment explanation
Indices: 91818--91869 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
91808 CTAAAAATTA
91818 AATAA-TTAATAT
1 AATAATTTAATAT
*
91830 AATTAATATAATAT
1 AA-TAATTTAATAT
*
91844 AACAAGTTTAATAT
1 AATAA-TTTAATAT
91858 AATAGATTTAAT
1 AATA-ATTTAAT
91870 TTATTTGATA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 2 0.06
13 5 0.16
14 24 0.75
15 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATTTAATAT
Found at i:92249 original size:19 final size:19
Alignment explanation
Indices: 92222--92262 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
92212 ATAATTGTTG
* *
92222 TTTATAATAGTAAATATTA
1 TTTAAAATAGTAAATAATA
*
92241 TTTAAAATAGTTAATAATA
1 TTTAAAATAGTAAATAATA
92260 TTT
1 TTT
92263 TGAACATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTAAAATAGTAAATAATA
Found at i:92374 original size:19 final size:19
Alignment explanation
Indices: 92350--92389 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
92340 ATAAATGAAG
*
92350 ATTAAA-TATTATTAATTAA
1 ATTAAATTAATATT-ATTAA
92369 ATTAAATTAATATTATTAA
1 ATTAAATTAATATTATTAA
92388 AT
1 AT
92390 ATTATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAATTAATATTATTAA
Found at i:92475 original size:16 final size:16
Alignment explanation
Indices: 92415--92477 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
92405 ATTATTGTAA
92415 TATAGATATATT-ATTAT
1 TATA-ATATATTAATT-T
92432 TACTAATA-ATTAA-TT
1 TA-TAATATATTAATTT
92447 T-TAATATCCATTAATTT
1 TATAATAT--ATTAATTT
92464 TATAATATATTAAT
1 TATAATATATTAAT
92478 GAAATATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 15
0.72 0.00 0.28
Matches are distributed among these distances:
13 5 0.13
15 2 0.05
16 15 0.38
17 9 0.23
18 8 0.21
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (16 bp):
TATAATATATTAATTT
Found at i:92507 original size:18 final size:18
Alignment explanation
Indices: 92481--92515 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92471 TATTAATGAA
*
92481 ATATTATTAATAATAATT
1 ATATAATTAATAATAATT
*
92499 ATATAATTACTAATAAT
1 ATATAATTAATAATAAT
92516 ATAATATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATTAATAATAATT
Found at i:92743 original size:4 final size:4
Alignment explanation
Indices: 92726--92755 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
92716 GAATTGTATA
92726 TAAT TAAT TCAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT T-AAT TAAT TAAT TAAT TAAT T
92756 TAAAATTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:93939 original size:14 final size:15
Alignment explanation
Indices: 93901--93945 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
93891 TGAGATAAAT
93901 AATTATTAATTATGATA
1 AATTATTAA-TAT-ATA
*
93918 AATAATTAATAT-TA
1 AATTATTAATATATA
93932 AATTATTAATATAT
1 AATTATTAATATAT
93946 TATTTGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.52
15 1 0.04
16 3 0.12
17 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AATTATTAATATATA
Found at i:93983 original size:32 final size:35
Alignment explanation
Indices: 93924--93989 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
93914 GATAAATAAT
93924 TAATATTAAATTATTAATATATTATTTGAATACATA
1 TAATATTAAATTATTAATATA-TATTTGAATACATA
* *
93960 TAAT-TTATATTATTAAT-TA-ATTTGTATACA
1 TAATATTAAATTATTAATATATATTTGAATACA
93990 ATTATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 10 0.36
34 2 0.07
35 12 0.43
36 4 0.14
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (35 bp):
TAATATTAAATTATTAATATATATTTGAATACATA
Found at i:94017 original size:16 final size:18
Alignment explanation
Indices: 93986--94020 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
93976 TTAATTTGTA
93986 TACAATTATAAATATTAT
1 TACAATTATAAATATTAT
94004 TACAA-TAT-AATATTAT
1 TACAATTATAAATATTAT
94020 T
1 T
94021 GTAAATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TACAATTATAAATATTAT
Found at i:94371 original size:13 final size:13
Alignment explanation
Indices: 94355--94380 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94345 ATCAATATAT
94355 TATTATTAATTAA
1 TATTATTAATTAA
94368 TATTATTAATTAA
1 TATTATTAATTAA
94381 ATAAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTATTAATTAA
Found at i:94401 original size:8 final size:8
Alignment explanation
Indices: 94350--94408 Score: 54
Period size: 8 Copynumber: 7.8 Consensus size: 8
94340 ATAGTATCAA
*
94350 TATATTAT
1 TATATAAT
94358 TAT-TAAT
1 TATATAAT
94365 TA-AT-AT
1 TATATAAT
94371 TAT-TAAT
1 TATATAAT
*
94378 TAAATAAAT
1 TATAT-AAT
*
94387 AATATAAT
1 TATATAAT
94395 TATATAAT
1 TATATAAT
94403 TATATA
1 TATATA
94409 TAAATAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
6 5 0.12
7 10 0.24
8 20 0.49
9 6 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
TATATAAT
Found at i:94438 original size:27 final size:27
Alignment explanation
Indices: 94381--94458 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
94371 TATTAATTAA
*
94381 ATAAATAATATAATTAT-ATA-ATTATAT
1 ATAAATAA-ATAATTATAATATATT-TAG
94408 ATAAATAAATAATTATAATATATTTAG
1 ATAAATAAATAATTATAATATATTTAG
* *
94435 ATAAAT-AACAA-TATATTATATTTA
1 ATAAATAAATAATTATAATATATTTA
94459 AGTATAATAG
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 12 0.26
26 12 0.26
27 19 0.41
28 3 0.07
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (27 bp):
ATAAATAAATAATTATAATATATTTAG
Found at i:94819 original size:25 final size:25
Alignment explanation
Indices: 94766--94835 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 25
94756 TATTATATTA
* *
94766 ATTAAGTAATATATTATTACTATATTT
1 ATTAA-TAATAT-TTAATACTATAATT
94793 ATTAATAATATTTAATACTATAATT
1 ATTAATAATATTTAATACTATAATT
94818 ATATAA-AATATTTGAATA
1 AT-TAATAATATTT-AATA
94836 AATTCATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 21 0.54
26 13 0.33
27 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (25 bp):
ATTAATAATATTTAATACTATAATT
Found at i:94896 original size:20 final size:20
Alignment explanation
Indices: 94859--94897 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
94849 ATAAATTTTA
*
94859 TAATTTATTATTTGTAATTG
1 TAATTTATTATATGTAATTG
94879 TAATTTATATATAT-TAATT
1 TAATTTAT-TATATGTAATT
94898 AATTAATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TAATTTATTATATGTAATTG
Found at i:95591 original size:16 final size:16
Alignment explanation
Indices: 95552--95592 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
95542 TTATATTTAG
95552 TTAATAAT-TAAATTA
1 TTAATAATATAAATTA
*
95567 TT-ATAAATATCAATTA
1 TTAAT-AATATAAATTA
95583 TTAATAATAT
1 TTAATAATAT
95593 TTTATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 2 0.09
15 5 0.23
16 13 0.59
17 2 0.09
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAATAATATAAATTA
Found at i:96027 original size:24 final size:24
Alignment explanation
Indices: 95982--96027 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
95972 CTATTTTTAA
*
95982 TTTATTTAAATTAATAATTATTTT
1 TTTATTTAAATTAATAACTATTTT
*
96006 TTTATTT-AATTATATTACTATT
1 TTTATTTAAATTA-ATAACTATT
96028 AATAACTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTATTTAAATTAATAACTATTTT
Found at i:96108 original size:34 final size:36
Alignment explanation
Indices: 96055--96122 Score: 97
Period size: 34 Copynumber: 1.9 Consensus size: 36
96045 AATTAATCAA
96055 AATAAGTTATTTAATATTAATATT-AAATTTATTATT
1 AATAAGTTATTTAATATTAAT-TTCAAATTTATTATT
*
96091 AATAA-TTA-TTAATATTAATTTCAATTTTATTA
1 AATAAGTTATTTAATATTAATTTCAAATTTATTA
96123 ACAAAAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 2 0.07
34 20 0.67
35 3 0.10
36 5 0.17
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (36 bp):
AATAAGTTATTTAATATTAATTTCAAATTTATTATT
Found at i:96317 original size:19 final size:19
Alignment explanation
Indices: 96254--96324 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
96244 TTATAGTTAC
* *
96254 ATTAATTTAATTAATATTT
1 ATTAATTTAATTAAAATTA
* * *
96273 ATTAATTAAAGATAATGAATAGA
1 ATTAATTTAA-TTAA--AAT-TA
96296 ATTAATTTAATTAAAATTA
1 ATTAATTTAATTAAAATTA
*
96315 ATTAAATTAA
1 ATTAATTTAA
96325 ATGTATTGAA
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
19 19 0.49
20 6 0.15
22 5 0.13
23 9 0.23
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
ATTAATTTAATTAAAATTA
Found at i:96730 original size:22 final size:20
Alignment explanation
Indices: 96698--96769 Score: 65
Period size: 22 Copynumber: 3.4 Consensus size: 20
96688 TTATAAAAGC
96698 TTATAATATTTATAACAATA
1 TTATAATATTTATAACAATA
*
96718 TTATATATAATTTATAACTATA
1 TTATA-AT-ATTTATAACAATA
*
96740 TTAATAATGATATTAGTAATAAT-
1 TT-ATAAT-AT-TTA-TAACAATA
96763 TTATAAT
1 TTATAAT
96770 TTATTATTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
20 5 0.12
21 2 0.05
22 23 0.53
23 8 0.19
24 5 0.12
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
TTATAATATTTATAACAATA
Found at i:96741 original size:34 final size:34
Alignment explanation
Indices: 96703--96768 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
96693 AAAGCTTATA
*
96703 ATATTTATAACAATATTA-TATATAATTTATAACT
1 ATATTAATAACAATATTAGTA-ATAATTTATAACT
**
96737 ATATTAATAATGATATTAGTAATAATTTATAA
1 ATATTAATAACAATATTAGTAATAATTTATAA
96769 TTTATTATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (34 bp):
ATATTAATAACAATATTAGTAATAATTTATAACT
Found at i:97759 original size:52 final size:53
Alignment explanation
Indices: 97703--97814 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 53
97693 TTATTCCTCC
* *
97703 ATTTGGCTGAAATTAAAAATATTTTCTC-TTTTGAATTTCTAAATTTTTCACA
1 ATTTGGCTCAAATTAAAAATATTTTCTCTTTTTGAATTTCTAAATTTTCCACA
* * * *
97755 ATTTGGGTCAATTTAGAAATATTTTCTCTTTTTTGAATTTCTAAATTTTCCACT
1 ATTTGGCTCAAATTAAAAATATTTTCTC-TTTTTGAATTTCTAAATTTTCCACA
97809 ATTTGG
1 ATTTGG
97815 GCCTATTCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 24 0.46
54 28 0.54
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.50
Consensus pattern (53 bp):
ATTTGGCTCAAATTAAAAATATTTTCTCTTTTTGAATTTCTAAATTTTCCACA
Found at i:97813 original size:54 final size:54
Alignment explanation
Indices: 97719--97838 Score: 167
Period size: 54 Copynumber: 2.3 Consensus size: 54
97709 CTGAAATTAA
* * *
97719 AAATATTTTCTC--TTTTGAATTTCTAAATTTTTCACAATTTGGGTCAATTTAG
1 AAATATTTTCTCTTTTTTGAATTTCTAAATTTTCCACAATTTGGGCCAATTCAG
* *
97771 AAATATTTTCTCTTTTTTGAATTTCTAAATTTTCCACTATTTGGGCCTATTCAG
1 AAATATTTTCTCTTTTTTGAATTTCTAAATTTTCCACAATTTGGGCCAATTCAG
97825 AAA-ATTTTCT-TTTT
1 AAATATTTTCTCTTTT
97839 CTTTTTTTCT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
52 16 0.26
53 7 0.11
54 38 0.62
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (54 bp):
AAATATTTTCTCTTTTTTGAATTTCTAAATTTTCCACAATTTGGGCCAATTCAG
Found at i:97848 original size:14 final size:15
Alignment explanation
Indices: 97829--97861 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
97819 ATTCAGAAAA
97829 TTTTC-TTTTTCTTT
1 TTTTCTTTTTTCTTT
97843 TTTTCTTTTTTCTTT
1 TTTTCTTTTTTCTTT
97858 TTTT
1 TTTT
97862 TTGTTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTCTTTTTTCTTT
Found at i:98047 original size:17 final size:16
Alignment explanation
Indices: 98027--98065 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
98017 ATTCTCAAAA
*
98027 TTTATTTATTTTTAATT
1 TTTATTT-TTTTTAAAT
98044 TTTAATTTTTTTTAAAT
1 TTT-ATTTTTTTTAAAT
98061 TTTAT
1 TTTAT
98066 CATGCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 14 0.70
18 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTTTTTTAAAT
Found at i:98541 original size:19 final size:19
Alignment explanation
Indices: 98517--98560 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
98507 TGCTGGCTAG
*
98517 AAAATTCAACCGGCACCAA
1 AAAATTCAACCGACACCAA
* *
98536 AAAATTCAATCGACGCCAA
1 AAAATTCAACCGACACCAA
98555 AAAATT
1 AAAATT
98561 TCGTTGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.50, C:0.25, G:0.09, T:0.16
Consensus pattern (19 bp):
AAAATTCAACCGACACCAA
Found at i:99054 original size:44 final size:42
Alignment explanation
Indices: 99004--99099 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 42
98994 ACTTTTTTTT
*
99004 TTTGAAAAAGTAATCAAA-GCTCCTCTAAACAAG-GGCTCAACAAC
1 TTTGAAAAA--AAT-AAACGCTCCTCTAAA-AAGAGGCACAACAAC
* *
99048 TTTGAAAAAAATAAATCGCTCCTCTAAATAGAGGCACGACAAC
1 TTTGAAAAAAATAAA-CGCTCCTCTAAAAAGAGGCACAACAAC
99091 TTTGAAAAA
1 TTTGAAAAA
99100 TAAAGGCTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
41 3 0.07
42 5 0.11
43 29 0.63
44 9 0.20
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.22
Consensus pattern (42 bp):
TTTGAAAAAAATAAACGCTCCTCTAAAAAGAGGCACAACAAC
Found at i:99532 original size:25 final size:24
Alignment explanation
Indices: 99436--99791 Score: 322
Period size: 25 Copynumber: 15.4 Consensus size: 24
99426 CATCTCAAAA
*
99436 ATTCTCATTTGAAGA--CTCAAAG
1 ATTCTCATTTGAAGATTCTTAAAG
*
99458 ATTCTCATTTGAAGA--CTCAAAG
1 ATTCTCATTTGAAGATTCTTAAAG
* *
99480 ATTCTCATTTGAA-A-ACTCAAAG
1 ATTCTCATTTGAAGATTCTTAAAG
*
99502 ATTCTCATTTGAGGATTTCTTAAAG
1 ATTCTCATTTGAAGA-TTCTTAAAG
*
99527 ATTCTCATTT-AAGATTC--AGAG
1 ATTCTCATTTGAAGATTCTTAAAG
* *
99548 ATTCTCATTT-AA-A-ACTCAAAG
1 ATTCTCATTTGAAGATTCTTAAAG
* *
99569 ATTCTCATTTGAGGATTTCTTAAAA
1 ATTCTCATTTGAAGA-TTCTTAAAG
* * *
99594 ATTCTCAATT-ATGA--CTCAAAG
1 ATTCTCATTTGAAGATTCTTAAAG
*
99615 ATTCTCATTTGAGGATTTCTTAAAG
1 ATTCTCATTTGAAGA-TTCTTAAAG
*
99640 ATTCTCATTT-AAGA--CTCAAAG
1 ATTCTCATTTGAAGATTCTTAAAG
*
99661 ATTCTCATTTGAGAAATTCTTAAAG
1 ATTCTCATTTGA-AGATTCTTAAAG
99686 ATTCTCATTTGAAGATTTCTTAAAG
1 ATTCTCATTTGAAGA-TTCTTAAAG
* *
99711 ATTCTCATTT-AAGA--CTCAAAT
1 ATTCTCATTTGAAGATTCTTAAAG
* *
99732 ATTCTCATTTGAGGATTTTTTAAAG
1 ATTCTCATTTGAAGA-TTCTTAAAG
99757 ATTCTCATTTGAAGATTTCTTAAAG
1 ATTCTCATTTGAAGA-TTCTTAAAG
99782 ATTCTCATTT
1 ATTCTCATTT
99792 ATGACTCAAA
Statistics
Matches: 280, Mismatches: 31, Indels: 43
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.00
20 1 0.00
21 74 0.26
22 62 0.22
23 7 0.03
24 15 0.05
25 120 0.43
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.40
Consensus pattern (24 bp):
ATTCTCATTTGAAGATTCTTAAAG
Found at i:99571 original size:67 final size:68
Alignment explanation
Indices: 99429--99626 Score: 287
Period size: 67 Copynumber: 3.0 Consensus size: 68
99419 GGTTTCACAT
* * *
99429 CTCAAAAATTCTCATTTGAAGA---CTCAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTG
1 CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTG
99491 AAAA
65 AAAA
* *
99495 CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGATTCAGAGATTCTCATTT-A
1 CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
99559 AAA
66 AAA
* * *
99562 CTCAAAGATTCTCATTTGAGGATTTCTTAAAAATTCTCAATTATGACTCAAAGATTCTCATTTGA
1 CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
99627 GGATTTCTTA
Statistics
Matches: 118, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
66 20 0.17
67 62 0.53
68 20 0.17
69 16 0.14
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (68 bp):
CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
AAA
Found at i:99686 original size:71 final size:71
Alignment explanation
Indices: 99611--99812 Score: 341
Period size: 71 Copynumber: 2.8 Consensus size: 71
99601 ATTATGACTC
*
99611 AAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGAA
1 AAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGAA
99676 ATTCTT
66 ATTCTT
* *
99682 AAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAATATTCTCATTTGAGGA
1 AAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGAA
* *
99747 TTTTTT
66 ATTCTT
* *
99753 AAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTATGACTCAAAGATTTTCATTT
1 AAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTT
99813 AAAGATTTAT
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 123 1.00
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.42
Consensus pattern (71 bp):
AAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGAA
ATTCTT
Found at i:99820 original size:46 final size:46
Alignment explanation
Indices: 99429--99819 Score: 319
Period size: 46 Copynumber: 8.5 Consensus size: 46
99419 GGTTTCACAT
* * *
99429 CTCAAAAATTCTCATTTGAAGA--CTCAAAGATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTAAAGATTCTTAAAGATTCTCATTTGAAGA
* *
99473 CTCAAAGATTCTCATTTGAAA-A--CTCAAAGATTCTCATTTGAGGA
1 CTCAAAGATTCTCATTT-AAAGATTCTTAAAGATTCTCATTTGAAGA
* * *
99517 TTTCTTAAAGATTCTCATTT-AAGATTC--AGAGATTCTCATTT-AAAA
1 ---CTCAAAGATTCTCATTTAAAGATTCTTAAAGATTCTCATTTGAAGA
* * * * *
99562 CTCAAAGATTCTCATTTGAGGATTTCTTAAAAATTCTCAATT-ATGA
1 CTCAAAGATTCTCATTTAAAGA-TTCTTAAAGATTCTCATTTGAAGA
* *
99608 CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTT-AAGA
1 CTCAAAGATTCTCATTTAAAGA-TTCTTAAAGATTCTCATTTGAAGA
99654 CTCAAAGATTCTCATTTGAGAA-ATTCTTAAAGATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTT-A-AAGATTCTTAAAGATTCTCATTTGAAGA
* * * *
99701 TTTCTTAAAGATTCTCATTT-AAGA--CTCAAATATTCTCATTTGAGGA
1 ---CTCAAAGATTCTCATTTAAAGATTCTTAAAGATTCTCATTTGAAGA
* * * *
99747 TTTTTTAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTT-ATGA
1 ---CTCAAAGATTCTCATTTAAAGA-TTCTTAAAGATTCTCATTTGAAGA
*
99796 CTCAAAGATTTTCATTTAAAGATT
1 CTCAAAGATTCTCATTTAAAGATT
99820 TATTAATTAT
Statistics
Matches: 294, Mismatches: 31, Indels: 43
0.80 0.08 0.12
Matches are distributed among these distances:
42 16 0.05
43 3 0.01
44 41 0.14
45 8 0.03
46 162 0.55
47 27 0.09
48 3 0.01
49 3 0.01
50 31 0.11
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (46 bp):
CTCAAAGATTCTCATTTAAAGATTCTTAAAGATTCTCATTTGAAGA
Found at i:101001 original size:13 final size:14
Alignment explanation
Indices: 100971--101007 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
100961 TTAATATTAT
*
100971 TTTAATCTATTTTA
1 TTTAATATATTTTA
100985 -TTAAT-TATTTTA
1 TTTAATATATTTTA
100997 TTTAATATATT
1 TTTAATATATT
101008 AAACTACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 7 0.33
13 10 0.48
14 4 0.19
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTAATATATTTTA
Found at i:101191 original size:15 final size:16
Alignment explanation
Indices: 101164--101207 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
101154 ATGTTTAGTT
* *
101164 ATAATTAATAATATTA
1 ATAATTTATAATAATA
*
101180 TTAATTTA-AATAATA
1 ATAATTTATAATAATA
101195 ATAATTTATAATA
1 ATAATTTATAATA
101208 CATGTAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATTTATAATAATA
Found at i:101239 original size:9 final size:10
Alignment explanation
Indices: 101225--101257 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
101215 TAACCTAAAG
101225 TTATAATTA-
1 TTATAATTAT
101234 TTATAATTAT
1 TTATAATTAT
101244 TTATAA-TAT
1 TTATAATTAT
101253 TTATA
1 TTATA
101258 TATAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTATAATTAT
Found at i:101462 original size:19 final size:18
Alignment explanation
Indices: 101440--101478 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
101430 TAAAATACTA
*
101440 TAATATAGTATCTTTTTAT
1 TAATATAGTAT-TTATTAT
101459 TAATATAGTATTTATTAT
1 TAATATAGTATTTATTAT
101477 TA
1 TA
101479 CACTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (18 bp):
TAATATAGTATTTATTAT
Found at i:101606 original size:15 final size:15
Alignment explanation
Indices: 101564--101608 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
101554 TATTAAGATA
*
101564 AATATATTATTTA-T
1 AATATATTATTAATT
101578 AATATATT-TATAATT
1 AATATATTAT-TAATT
101593 AATATATTATTAATT
1 AATATATTATTAATT
101608 A
1 A
101609 TAGTAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 1 0.04
14 10 0.37
15 15 0.56
16 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATATATTATTAATT
Found at i:101610 original size:27 final size:27
Alignment explanation
Indices: 101564--101680 Score: 71
Period size: 27 Copynumber: 4.1 Consensus size: 27
101554 TATTAAGATA
*
101564 AATATATTATTTATAATATATTTATAATT
1 AATATATTA-TTA-ATTATATTTATAATT
* * *
101593 AATATATTATTAATTATAGTAAAAATT
1 AATATATTATTAATTATATTTATAATT
*
101620 AATAT-TTA--AATTATAATTGTTTAAATT
1 AATATATTATTAATTAT-ATT-TAT-AATT
*
101647 GAAATAATATTAATAATT-TATTTTATAATT
1 --AAT-ATATTATTAATTATA-TTTATAATT
101677 AATA
1 AATA
101681 CAATTAATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
24 6 0.09
25 2 0.03
26 3 0.04
27 21 0.30
28 6 0.09
29 12 0.17
30 6 0.09
31 6 0.09
32 3 0.04
33 4 0.06
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.50
Consensus pattern (27 bp):
AATATATTATTAATTATATTTATAATT
Found at i:101709 original size:19 final size:17
Alignment explanation
Indices: 101682--101722 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
101672 TAATTAATAC
101682 AATTAATTTAACTACTAAT
1 AATTAATTTAA-TA-TAAT
*
101701 AATTTATTTAATATAAT
1 AATTAATTTAATATAAT
101718 AATTA
1 AATTA
101723 TAATATACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 8 0.40
18 2 0.10
19 10 0.50
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAATTTAATATAAT
Found at i:101758 original size:13 final size:12
Alignment explanation
Indices: 101721--101778 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
101711 ATATAATAAT
*
101721 TATAATATACTA
1 TATAATATATTA
*
101733 TTTAA-AT-TTA
1 TATAATATATTA
101743 TATAATATAATTA
1 TATAATAT-ATTA
101756 TATGAATATATTA
1 TAT-AATATATTA
101769 -ATAAT-TATTA
1 TATAATATATTA
101779 AATTAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 10 0.26
14 5 0.13
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TATAATATATTA
Found at i:101850 original size:17 final size:18
Alignment explanation
Indices: 101809--101859 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
101799 TTTATAGATC
101809 TTATTAAG-ATATATAAA
1 TTATTAAGTATATATAAA
101826 TTAATTAA-TAATATATAAA
1 TT-ATTAAGT-ATATATAAA
101845 TT-TTAAGTATATATA
1 TTATTAAGTATATATA
101860 CATAACCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 13 0.43
18 6 0.20
19 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (18 bp):
TTATTAAGTATATATAAA
Found at i:103394 original size:20 final size:17
Alignment explanation
Indices: 103352--103399 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 17
103342 ATTAAACTAT
103352 TAATAATAAA-TAATCA
1 TAATAATAAATTAATCA
103368 TAATAATAAAATTAATCA
1 TAATAAT-AAATTAATCA
103386 GTAAATAATTAAAT
1 -T-AATAA-TAAAT
103400 GTTATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 7 0.26
17 3 0.11
18 6 0.22
19 1 0.04
20 9 0.33
21 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (17 bp):
TAATAATAAATTAATCA
Found at i:103441 original size:23 final size:23
Alignment explanation
Indices: 103410--103453 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
103400 GTTATTATTA
* *
103410 AAATCAATAATAATTAAATAATT
1 AAATAAATAATAAATAAATAATT
103433 AAATAAATAATAAATAAATAA
1 AAATAAATAATAAATAAATAA
103454 GATTAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AAATAAATAATAAATAAATAATT
Found at i:103461 original size:20 final size:20
Alignment explanation
Indices: 103417--103461 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
103407 TTAAAATCAA
*
103417 TAATAATTAAATAATTAAAT
1 TAATAATTAAATAAATAAAT
*
103437 AAATAA-TAAATAAATAAGAT
1 TAATAATTAAATAAATAA-AT
103457 TAATA
1 TAATA
103462 TTATGCTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
TAATAATTAAATAAATAAAT
Found at i:105283 original size:180 final size:181
Alignment explanation
Indices: 104957--105286 Score: 418
Period size: 180 Copynumber: 1.8 Consensus size: 181
104947 TTTGATCATC
* * *
104957 AAACAATTGGTTTTGTTCATACTATTTTATTTAGAATAAAATAATTCTAATTTAATAATATTTTG
1 AAACAATTGGTTTTGTTCATACAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTTTG
* * *
105022 AAACTTAATAACCAAGAAAATTAAAAAACAAATCTAATTGTCGAACCAGTTCAAATAGTTAAGAC
66 AAAATCAATAACCAAGAAAATTAAAAAACAAATCTAATTGTCGAACCAGTTCAAATAGTTAAGAA
*
105087 TCTATGAATGATTATCTATTTCAAATTGTTAAGACTTTTTCTTTTAGCGTA
131 TCTATGAATAATTATCTATTTCAAATTGTTAAGACTTTTTCTTTTAGCGTA
* * *
105138 AAACAATT-GTTTTGTTCGTACAAGTTTATTTGGATTAAAATAATACTAATTTAATAATATTTTG
1 AAACAATTGGTTTTGTTCATACAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTTTG
** * * * ** * *
105202 AAAATCAATAAGTAAGAGATTTAAAAAATAAAT-TTGTT-TACTGAATCAGTTCAAATGGTTAA-
66 AAAATCAATAACCAAGAAAATTAAAAAACAAATCTAATTGT-C-GAACCAGTTCAAATAGTTAAG
105264 AAT-TATTAGAATAATTATCTATT
129 AATCTA-T-GAATAATTATCTATT
105287 GCATATCATT
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
178 3 0.02
179 7 0.06
180 108 0.86
181 8 0.06
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.40
Consensus pattern (181 bp):
AAACAATTGGTTTTGTTCATACAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTTTG
AAAATCAATAACCAAGAAAATTAAAAAACAAATCTAATTGTCGAACCAGTTCAAATAGTTAAGAA
TCTATGAATAATTATCTATTTCAAATTGTTAAGACTTTTTCTTTTAGCGTA
Found at i:105421 original size:25 final size:24
Alignment explanation
Indices: 105388--105453 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 24
105378 TTTAAATTTT
105388 ATTATTAATAATATAATATAATAA
1 ATTATTAATAATATAATATAATAA
*
105412 ATCTATTAATACT-TAATAT--TAA
1 AT-TATTAATAATATAATATAATAA
* *
105434 ATTATTTAT-TTATAATATAA
1 ATTATTAATAATATAATATAA
105454 ATAGTCATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
20 1 0.03
21 12 0.34
22 5 0.14
24 8 0.23
25 9 0.26
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTATTAATAATATAATATAATAA
Found at i:105769 original size:181 final size:182
Alignment explanation
Indices: 105452--105831 Score: 451
Period size: 181 Copynumber: 2.1 Consensus size: 182
105442 TTTATAATAT
** *
105452 AAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCACTTTTTAAATCTCTTACTCATTA
1 AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTCACTTTTTAAATCTCTTACTCATTA
* ** * * * *** *
105517 ATTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCAAATAAGCCTATATGAATTGATATAAC
66 ATTGTTAAAATAGTAATAAATTAATATTATTTTATCTCAAATAAGCCTATATGAACAAAAATAAC
* * * * *
105582 TGTTTTATGGCGAAA-CAAAAGGTCATAACAATTTGAAATAGATAATTATTC
131 TGTTTTATGACAAAATAAAAAGGTCATAACAATATGAAATAAATAATTATTC
* * * * * * * *
105633 AGATAGTTATTACTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTA
1 AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTCACTTTTTAAATCTCTTACTCATTA
* *
105698 ATTGTTAAAATATTAATAAATTAATATTATTTTAATCT-GAATAAG-CTAATATGAACAAAAATA
66 ATTGTTAAAATAGTAATAAATTAATATTATTTT-ATCTCAAATAAGCCT-ATATGAACAAAAATA
* *
105761 ATTGTTTTATGACAAAATAAAAAGGTCATAACAATATGAAATAAATAATTATTT
129 ACTGTTTTATGACAAAATAAAAAGGTCATAACAATATGAAATAAATAATTATTC
105815 AAATAGTCATAACTATT
1 AAATAGTCATAACTATT
105832 CAAAATTATT
Statistics
Matches: 163, Mismatches: 33, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
180 2 0.01
181 112 0.69
182 49 0.30
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (182 bp):
AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTCACTTTTTAAATCTCTTACTCATTA
ATTGTTAAAATAGTAATAAATTAATATTATTTTATCTCAAATAAGCCTATATGAACAAAAATAAC
TGTTTTATGACAAAATAAAAAGGTCATAACAATATGAAATAAATAATTATTC
Found at i:105968 original size:120 final size:120
Alignment explanation
Indices: 105737--105970 Score: 274
Period size: 120 Copynumber: 1.9 Consensus size: 120
105727 TTTTAATCTG
*
105737 AATAAGCTAATATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGGTCATAACAATATGAAA
1 AATAAGCTAATATGAACAAAAATAATTATTTTATGAC-AAATAAAAAGGTCATAACAATATGAAA
* *
105802 TAAATAATTATTTAAATAGTCATAACTATTCAAAATTATTCAGTAAATAAATTTGA
65 TAAATAATTATTCAAATAGCCATAACTATTCAAAATTATTCAGTAAATAAATTTGA
** * * * *
105858 AATAAGCTTGTATGAATAGAAAA-AATTATTTTATGAC-AATACAAAAGGTTATAGCAATTTGAA
1 AATAAGCTAATATGAACA-AAAATAATTATTTTATGACAAATA-AAAAGGTCATAACAATATGAA
* * * * * * * *
105921 CTAGATAATTGTTCAAATAGCCATAATTATTTAAACTTGTTCGGTAAATA
64 ATAAATAATTATTCAAATAGCCATAACTATTCAAAATTATTCAGTAAATA
105971 GATTCATTTT
Statistics
Matches: 94, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
119 4 0.04
120 58 0.62
121 28 0.30
122 4 0.04
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.33
Consensus pattern (120 bp):
AATAAGCTAATATGAACAAAAATAATTATTTTATGACAAATAAAAAGGTCATAACAATATGAAAT
AAATAATTATTCAAATAGCCATAACTATTCAAAATTATTCAGTAAATAAATTTGA
Found at i:106274 original size:182 final size:181
Alignment explanation
Indices: 105857--106400 Score: 494
Period size: 182 Copynumber: 3.0 Consensus size: 181
105847 AATAAATTTG
* * * * * *
105857 AAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAATACAAAAGGTTATAGCAATTTGAAC
1 AAATAAGCTTGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
* * * ** * *
105922 TAGATAATTGTTCAAATAGCCATAATTATTTAAACTTGTTCGGTAAATAGATTCATTTTTTAAAT
66 TAAATAATTGTTCAAATAGTCATAATTATTTAAACTAGTTCGCCAAATAGATACATTTTCTAAAT
***
105987 CATTCACTTATTAATTTTTGGAATATTAATAAATTAGAATTATGTTATTCT
131 CATTCACTTATTAATTTTAAAAATATTAATAAATTAGAATTATGTTATTCT
* * * * * * *
106038 AAATGAGCTTGTATGAACAAAAACAATTGTTTTGTGAGAAAATAAAAAGGTCATAACGATTTGAA
1 AAATAAGCTTGTATGAACAGAAACAATTATTTTATGACAAAA-CAAAAGGTCATAACAATTTGAA
* * **
106103 ATAAATAATTATTCAAATAGTCATAATTGTTTGCACTAG-TCAAGCCAAA-AGATACATTTTCTA
65 ATAAATAATTGTTCAAATAGTCATAATTATTTAAACTAGTTC--GCCAAATAGATACATTTTCTA
*
106166 AATCCATT-ACTTATTAATTTTCAAAAATATTAATAAATTAGCATTACT-TTATT-T
128 AAT-CATTCACTTATTAATTTT-AAAAATATTAATAAATTAGAATTA-TGTTATTCT
* * * * *
106220 CGAATAAGATTATATGAACAGAAACAATTATTTTATGATAAAACAAATGGTCATAACAATTTGAA
1 -AAATAAGCTTGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAA
* * * * * * * * ** *
106285 ATAAATATTTGGTCAAATAGTTATAACTAATTGAACTGGTAT-GGCAAATAGATTTATTTTTTAA
65 ATAAATAATTGTTCAAATAGTCATAATTATTTAAACTAGT-TCGCCAAATAGATACATTTTCTAA
* ** *
106349 ATC-TCTTA-TGTATTAATTTTTGAAATATTAATAAATTA-ATATTATTTTATTC
129 ATCAT-TCACT-TATTAATTTTAAAAATATTAATAAATTAGA-ATTATGTTATTC
106401 CAAACAAACT
Statistics
Matches: 292, Mismatches: 55, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
180 2 0.01
181 69 0.24
182 152 0.52
183 67 0.23
184 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.39
Consensus pattern (181 bp):
AAATAAGCTTGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
TAAATAATTGTTCAAATAGTCATAATTATTTAAACTAGTTCGCCAAATAGATACATTTTCTAAAT
CATTCACTTATTAATTTTAAAAATATTAATAAATTAGAATTATGTTATTCT
Found at i:106768 original size:29 final size:29
Alignment explanation
Indices: 106736--106801 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
106726 ATTTTATTGC
106736 TAATAAAT-ATAATAATTA-TAGTAATAAT-A
1 TAATAAATAATAAT-ATTACTA-TAA-AATAA
*
106765 TAATAATTAATAATATTACTATAAAATAA
1 TAATAAATAATAATATTACTATAAAATAA
106794 TAATAAAT
1 TAATAAAT
106802 TATTATCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 3 0.09
29 22 0.69
30 7 0.22
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (29 bp):
TAATAAATAATAATATTACTATAAAATAA
Found at i:107294 original size:29 final size:30
Alignment explanation
Indices: 107262--107322 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
107252 ATAATAGTTA
*
107262 ATTAAATAAATACTTA-ATTTATTTAATAT
1 ATTAAATAAATACTTATAATTATTTAATAT
*
107291 ATTAAATAAATTCTTATTAATTATTTAATAT
1 ATTAAATAAATACTTA-TAATTATTTAATAT
107322 A
1 A
107323 ATAGAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 15 0.54
31 13 0.46
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTAAATAAATACTTATAATTATTTAATAT
Found at i:107352 original size:13 final size:14
Alignment explanation
Indices: 107306--107354 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
107296 ATAAATTCTT
107306 ATTAATT-AT-TTA
1 ATTAATTAATATTA
*
107318 ATATAATAGAATATTA
1 AT-TAAT-TAATATTA
107334 ATTAATTAATATT-
1 ATTAATTAATATTA
107347 ATTAATTA
1 ATTAATTA
107355 TCTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 12 0.39
14 6 0.19
15 6 0.19
16 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTAATTAATATTA
Found at i:107479 original size:13 final size:13
Alignment explanation
Indices: 107461--107486 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107451 TATATTATAA
107461 TAAATATTTAATT
1 TAAATATTTAATT
107474 TAAATATTTAATT
1 TAAATATTTAATT
107487 ATATAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAAATATTTAATT
Found at i:107622 original size:20 final size:19
Alignment explanation
Indices: 107571--107634 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
107561 AAATATTAGT
*
107571 TATT-TAATAATTATCAAT
1 TATTATAATAATTATCAAA
107589 TA-TATGAATAAATTATCCAAA
1 TATTAT-AAT-AATTAT-CAAA
*
107610 TATTATAATAATTATAATAA
1 TATTATAATAATTATCA-AA
107630 TATTA
1 TATTA
107635 GATATAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 4 0.11
20 19 0.50
21 8 0.21
22 3 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (19 bp):
TATTATAATAATTATCAAA
Found at i:107753 original size:20 final size:20
Alignment explanation
Indices: 107728--107797 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
107718 TAATTTATTT
*
107728 ATATTACTTATTAATGATAA
1 ATATTAATTATTAATGATAA
* *
107748 ATATTAATTATTTATTATAA
1 ATATTAATTATTAATGATAA
* *
107768 ATTTTAA-T-TT-ATCATAA
1 ATATTAATTATTAATGATAA
*
107785 ATATTAATAATTA
1 ATATTAATTATTA
107798 CTATTAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
17 12 0.30
18 2 0.05
19 3 0.08
20 23 0.57
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (20 bp):
ATATTAATTATTAATGATAA
Found at i:107779 original size:17 final size:17
Alignment explanation
Indices: 107757--107792 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
107747 AATATTAATT
* *
107757 ATTTATTATAAATTTTA
1 ATTTATCATAAATATTA
107774 ATTTATCATAAATATTA
1 ATTTATCATAAATATTA
107791 AT
1 AT
107793 AATTACTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATCATAAATATTA
Found at i:108047 original size:19 final size:19
Alignment explanation
Indices: 108023--108076 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
108013 ATATAAATAA
108023 TTATTATATATTAATCTAT
1 TTATTATATATTAATCTAT
*
108042 TTATTATATAATAAT-TAT
1 TTATTATATATTAATCTAT
108060 TATATT-TAT-TT-ATCTAT
1 T-TATTATATATTAATCTAT
108077 CAATATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 2 0.06
17 4 0.13
18 7 0.23
19 18 0.58
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (19 bp):
TTATTATATATTAATCTAT
Found at i:108256 original size:12 final size:11
Alignment explanation
Indices: 108238--108302 Score: 53
Period size: 12 Copynumber: 5.7 Consensus size: 11
108228 TAAGAATAAT
108238 TAATTATTATA
1 TAATTATTATA
108249 TCAATTATT-T-
1 T-AATTATTATA
*
108259 TAATAATTAATA
1 TAATTATT-ATA
* *
108271 TAATAATTAAA
1 TAATTATTATA
108282 TTAATTTATTATA
1 -TAA-TTATTATA
108295 TAATTATT
1 TAATTATT
108303 TACTTATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
9 6 0.14
10 1 0.02
11 10 0.23
12 21 0.48
13 6 0.14
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATTATTATA
Found at i:108278 original size:24 final size:24
Alignment explanation
Indices: 108232--108303 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
108222 TATTATTAAG
108232 AATAATTAATTATTATATCAATTATTTT
1 AATAATTAA-TA-TA-AT-AATTATTTT
**
108260 AATAATTAATATAATAATTAAATT
1 AATAATTAATATAATAATTATTTT
*
108284 AAT--TTATTAT-ATAATTATTT
1 AATAATTAATATAATAATTATTT
108304 ACTTATAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 8 0.21
22 6 0.15
24 10 0.26
25 2 0.05
26 2 0.05
27 2 0.05
28 9 0.23
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (24 bp):
AATAATTAATATAATAATTATTTT
Found at i:108322 original size:46 final size:46
Alignment explanation
Indices: 108235--108332 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 46
108225 TATTAAGAAT
* *
108235 AATTAA-TTATTATATCAATTATTTTAATAATTAATATAATAATTA
1 AATTAATTTATTATATCAATTATTTTAATAATTAATAAAATAATAA
*
108280 AATTAATTTATTATAT-AATTATTTACTTATAATT-ATAAAATAATAA
1 AATTAATTTATTATATCAATTATTT--TAATAATTAATAAAATAATAA
108326 AATTAAT
1 AATTAAT
108333 ATATCAATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
45 14 0.30
46 26 0.55
47 7 0.15
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (46 bp):
AATTAATTTATTATATCAATTATTTTAATAATTAATAAAATAATAA
Found at i:108669 original size:17 final size:16
Alignment explanation
Indices: 108649--108680 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
108639 TGAATCAGAT
108649 AATATTAAAATATATAC
1 AATATTAAAA-ATATAC
108666 AATATTAAAAATATA
1 AATATTAAAAATATA
108681 TTAATTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
AATATTAAAAATATAC
Found at i:109277 original size:18 final size:18
Alignment explanation
Indices: 109217--109280 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 18
109207 ATAAGTTATG
109217 ATTAAT-ATTTATTAATT
1 ATTAATAATTTATTAATT
* * *
109234 CATTATTATAAGTTAATAATAA
1 -ATTA--ATAATTTATTAAT-T
109256 ATTAATAATTTATTAATT
1 ATTAATAATTTATTAATT
109274 ATTAATA
1 ATTAATA
109281 GTAATAACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 11 0.31
19 11 0.31
20 2 0.06
21 12 0.33
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTAATAATTTATTAATT
Found at i:109482 original size:23 final size:24
Alignment explanation
Indices: 109443--109499 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
109433 TAATCAATTT
* *
109443 ATATAATTAT-TATATAAGTAT-TA
1 ATATTATTATATATATAA-TATAAA
109466 ATATTATTATATA-ATAATATAAA
1 ATATTATTATATATATAATATAAA
109489 ATATTA-TATAT
1 ATATTATTATAT
109500 GATACTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 8 0.27
23 20 0.67
24 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
ATATTATTATATATATAATATAAA
Found at i:109497 original size:28 final size:31
Alignment explanation
Indices: 109441--109499 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
109431 CATAATCAAT
* *
109441 TTATATAATTATTATATAAGTATTAATATTA
1 TTATATAATTAATATATAAATATTAATATTA
109472 TTATATAA-TAATATA-AAATATTATATAT
1 TTATATAATTAATATATAAATATTA-ATAT
109500 GATACTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
30 10 0.40
31 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (31 bp):
TTATATAATTAATATATAAATATTAATATTA
Found at i:109574 original size:18 final size:19
Alignment explanation
Indices: 109539--109588 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
109529 AACTATTAAT
*
109539 ATAAATTTATAATTTATAA
1 ATAAATTTATAATATATAA
*
109558 ATAAA-TTATTATATAT-A
1 ATAAATTTATAATATATAA
*
109575 ATAATAATTATAAT
1 ATAA-ATTTATAAT
109589 TAATTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 11 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAAATTTATAATATATAA
Found at i:109583 original size:19 final size:19
Alignment explanation
Indices: 109561--109646 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 19
109551 TTTATAAATA
109561 AATTATTATATATAATAAT
1 AATTATTATATATAATAAT
109580 AATTA-TA-AT-TAAT--T
1 AATTATTATATATAATAAT
*
109594 AATTA-TAT-TATACT--T
1 AATTATTATATATAATAAT
109609 -ATTATT-TAATATAACTAA-
1 AATTATTAT-ATATAA-TAAT
109627 AATTATTA-ATATAATAAT
1 AATTATTATATATAATAAT
109645 AA
1 AA
109647 ATATAATAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 23
0.68 0.03 0.29
Matches are distributed among these distances:
14 14 0.26
15 5 0.09
16 8 0.15
17 6 0.11
18 10 0.19
19 11 0.20
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTATTATATATAATAAT
Found at i:109905 original size:13 final size:15
Alignment explanation
Indices: 109887--109932 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
109877 CAAATTTAAA
109887 ATTAATA-AATTA-T
1 ATTAATATAATTATT
109900 ATTAATATTAATTATT
1 ATTAATA-TAATTATT
* *
109916 ATTAACATAATAATT
1 ATTAATATAATTATT
109931 AT
1 AT
109933 CATTATTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAATATAATTATT
Found at i:109926 original size:21 final size:22
Alignment explanation
Indices: 109902--109954 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
109892 TAAATTATAT
109902 TAATATTAATTATTATTA-ACA
1 TAATATTAATTATTATTACACA
*
109923 TAATAATT-ATCATTATTACACA
1 TAAT-ATTAATTATTATTACACA
109945 -AAT-TTAATTA
1 TAATATTAATTA
109955 AAAATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 2 0.07
20 3 0.11
21 16 0.59
22 6 0.22
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTAATTATTATTACACA
Found at i:110157 original size:29 final size:30
Alignment explanation
Indices: 110017--110158 Score: 80
Period size: 29 Copynumber: 4.6 Consensus size: 30
110007 TTACCTTTAT
* *
110017 ATATTAATAATTATGTTAATTATTATTACTAA-A
1 ATATTAATAA-TATATTAATTA-AATT--TAATA
* *
110050 ATATTAACTAATAT-TTAATTGAGTTTAATA
1 ATATTAA-TAATATATTAATTAAATTTAATA
* *
110080 A-ATTAATAA-ATAATTGATTAAATTATTATAA
1 ATATTAATAATAT-ATTAATTAAATT-TAAT-A
* *
110111 ATATT-TTAATATTTTTAATT-AATTTAATA
1 ATATTAATAATA-TATTAATTAAATTTAATA
*
110140 ATATTTATAATATATTAAT
1 ATATTAATAATATATTAAT
110159 ATTTATACTA
Statistics
Matches: 86, Mismatches: 13, Indels: 24
0.70 0.11 0.20
Matches are distributed among these distances:
27 2 0.02
28 3 0.03
29 28 0.33
30 13 0.15
31 11 0.13
32 15 0.17
33 11 0.13
34 3 0.03
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (30 bp):
ATATTAATAATATATTAATTAAATTTAATA
Found at i:110291 original size:13 final size:13
Alignment explanation
Indices: 110267--110319 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
110257 ATTATTTTAA
110267 TATAATTATTATTT
1 TATAA-TATTATTT
110281 TATAATATTATTT
1 TATAATATTATTT
* * *
110294 TATTATAATATAT
1 TATAATATTATTT
*
110307 TATTAATAGTATT
1 TA-TAATATTATT
110320 ATAAATTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
13 20 0.62
14 12 0.38
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
TATAATATTATTT
Found at i:110305 original size:21 final size:21
Alignment explanation
Indices: 110272--110311 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
110262 TTTAATATAA
**
110272 TTATTATTTTATAATATTATT
1 TTATTATAATATAATATTATT
*
110293 TTATTATAATATATTATTA
1 TTATTATAATATAATATTA
110312 ATAGTATTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATTATAATATAATATTATT
Found at i:110320 original size:30 final size:30
Alignment explanation
Indices: 110257--110321 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
110247 TAAGTTTTAA
*
110257 ATTATTTTAATATAATTATTATTTTATAAT
1 ATTATTTTAATATAATTATTATTTAATAAT
* *
110287 ATTATTTTATTATAATATATTA-TTAATAGT
1 ATTATTTTAATATAAT-TATTATTTAATAAT
110317 ATTAT
1 ATTAT
110322 AAATTATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 26 0.84
31 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (30 bp):
ATTATTTTAATATAATTATTATTTAATAAT
Found at i:110620 original size:33 final size:34
Alignment explanation
Indices: 110551--110623 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
110541 AAATAAGTAT
*
110551 TTAATTATATAAATATAATTATTAATTTAATTAA
1 TTAATTATATAAATATAATTATTAATTTAATAAA
*
110585 TTAATTATGTAAGATA-AATT-TTAA-TTAGATAAA
1 TTAATTATATAA-ATATAATTATTAATTTA-ATAAA
110618 TTAATT
1 TTAATT
110624 TAATTTAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 3 0.09
33 14 0.40
34 15 0.43
35 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (34 bp):
TTAATTATATAAATATAATTATTAATTTAATAAA
Found at i:111397 original size:15 final size:15
Alignment explanation
Indices: 111379--111431 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
111369 GTATATATTC
111379 ATTTTAATAATATAT
1 ATTTTAATAATATAT
111394 ATTTTAA-AAT-TAT
1 ATTTTAATAATATAT
*
111407 AATTTATATAATAATAT
1 ATTTTA-ATAAT-ATAT
111424 ATATTTAA
1 AT-TTTAA
111432 GACTATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 8 0.26
14 4 0.13
15 10 0.32
17 5 0.16
18 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTTTAATAATATAT
Done.