Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168387.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_604, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21691
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33


Found at i:6858 original size:42 final size:43

Alignment explanation


    Indices: 6808--6891  Score: 143
    Period size: 42  Copynumber: 2.0  Consensus size: 43

       6798 AAATTAACGC

                                     *     *           
       6808 AAATCTAAATCATCATAAAAAAATTTAGTCGTA-TTTTCTTTT
          1 AAATCTAAATCATCATAAAAAAATTGAGTCGCATTTTTCTTTT

                                                      
       6850 AAATCTAAATCATCATAAAAAAATTGAGTCGCATTTTTCTTT
          1 AAATCTAAATCATCATAAAAAAATTGAGTCGCATTTTTCTTT

       6892 CTCTTTTCTA


Statistics
Matches: 39,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  42   31  0.79
  43    8  0.21

ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40


Consensus pattern (43 bp):   
AAATCTAAATCATCATAAAAAAATTGAGTCGCATTTTTCTTTT

Found at i:12223 original size:16 final size:15

Alignment explanation


    Indices: 12177--12224  Score: 51
    Period size: 18  Copynumber: 3.0  Consensus size: 15

      12167 GCTTCTCTAA

                   *       
      12177 ATTTTTTGTAATTTT
          1 ATTTTTTTTAATTTT

                             
      12192 ATTTTTTTCTAAATTTT
          1 ATTTTTTT-T-AATTTT

                      *     
      12209 CATTTTTTTTCATTTT
          1 -ATTTTTTTTAATTTT

      12225 TTCTGTTTTC


Statistics
Matches: 28,  Mismatches: 2, Indels: 5
        0.80            0.06        0.14

Matches are distributed among these distances:
  15    7  0.25
  16    6  0.21
  17    7  0.25
  18    8  0.29

ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73


Consensus pattern (15 bp):   
ATTTTTTTTAATTTT

Found at i:12468 original size:22 final size:22

Alignment explanation


    Indices: 12440--12483  Score: 79
    Period size: 22  Copynumber: 2.0  Consensus size: 22

      12430 ACAATTGTAG

                             *    
      12440 AATTTAAATGGACCATATATGC
          1 AATTTAAATGGACCATAAATGC

                                  
      12462 AATTTAAATGGACCATAAATGC
          1 AATTTAAATGGACCATAAATGC

      12484 TTCCCGTGGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30


Consensus pattern (22 bp):   
AATTTAAATGGACCATAAATGC

Found at i:13060 original size:12 final size:12

Alignment explanation


    Indices: 13043--13067  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

      13033 CACCGCATGC

                        
      13043 TGAATGGGATGT
          1 TGAATGGGATGT

                        
      13055 TGAATGGGATGT
          1 TGAATGGGATGT

             
      13067 T
          1 T

      13068 TACATTCGGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36


Consensus pattern (12 bp):   
TGAATGGGATGT

Found at i:19337 original size:13 final size:13

Alignment explanation


    Indices: 19321--19392  Score: 53
    Period size: 13  Copynumber: 5.6  Consensus size: 13

      19311 TTTTTATTTG

                         
      19321 TTATATTAATAAT
          1 TTATATTAATAAT

                *        
      19334 TTATGTTAATAAT
          1 TTATATTAATAAT

             * *         
      19347 TAAGA-T-ATAAT
          1 TTATATTAATAAT

                          
      19358 TTATATTCAA-AA-
          1 TTATATT-AATAAT

                     *    
      19370 TTATAATTATTAAT
          1 TTAT-ATTAATAAT

                     
      19384 GTTATATTA
          1 -TTATATTA

      19393 TTGAATTGAT


Statistics
Matches: 45,  Mismatches: 7, Indels: 13
        0.69            0.11        0.20

Matches are distributed among these distances:
  11    8  0.18
  12    7  0.16
  13   21  0.47
  14    5  0.11
  15    4  0.09

ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50


Consensus pattern (13 bp):   
TTATATTAATAAT
Done.