genome.fa.s564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168389.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21667

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679--711	14	2.4	14	90	5	50	45	0	0	54	0.99
732--769	19	2.0	19	85	10	51	44	5	0	50	1.24
1454--1512	19	3.1	19	80	9	66	50	1	1	45	1.21
1456--1519	19	3.2	20	72	25	55	46	1	3	48	1.27
1798--1864	23	2.8	25	82	6	77	44	4	2	47	1.38
1827--1879	23	2.4	22	81	9	54	52	0	3	43	1.19
1991--2054	22	3.0	22	75	20	64	42	1	6	50	1.37
2191--2237	23	2.2	22	85	11	62	59	0	0	40	0.97
2600--2643	15	2.9	15	80	12	54	54	0	0	45	0.99
2668--2728	17	3.8	17	72	23	51	52	6	0	40	1.27
2910--2962	28	1.9	27	88	3	79	41	0	1	56	1.10
4037--4080	12	3.6	11	80	19	52	43	6	0	50	1.29
4037--4079	13	3.5	12	84	12	52	44	6	0	48	1.29
4337--4379	17	2.4	18	84	7	52	58	0	4	37	1.19
4566--4622	30	1.9	30	82	7	71	40	7	1	50	1.40
4648--4758	19	5.9	19	69	17	81	52	0	1	45	1.11
4652--4723	27	2.7	26	72	14	65	52	0	2	44	1.15
4720--4754	16	2.2	16	90	5	54	45	0	0	54	0.99
4741--4812	22	3.2	22	74	18	60	45	1	1	51	1.18
4784--4864	26	3.6	23	75	15	71	46	1	1	50	1.17
5076--5138	16	4.0	15	78	13	56	50	0	3	46	1.17
6424--6456	15	2.1	16	88	5	50	51	3	0	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6445--6511	19	3.7	18	77	16	75	43	0	1	55	1.09
6450--6520	16	4.2	16	77	19	56	43	1	1	53	1.18
6445--6520	37	2.1	37	83	9	95	44	1	1	52	1.17
6550--6605	16	3.4	16	73	14	51	37	0	1	60	1.07
7169--7204	18	2.0	19	89	10	58	47	0	5	47	1.25
7291--7411	28	4.4	26	74	16	70	47	2	0	49	1.20
7308--7411	29	3.7	28	68	25	76	48	0	0	50	1.14
7315--7411	41	2.3	42	81	12	110	48	1	1	49	1.14
7517--7562	24	1.9	24	86	8	67	54	4	2	39	1.32
7594--7640	13	3.5	13	80	11	51	46	0	0	53	1.00
7818--7884	22	3.3	22	72	14	63	53	0	0	46	1.00
7885--7909	13	1.9	13	100	0	50	48	0	0	52	1.00
7824--7939	17	6.9	17	67	28	54	52	0	0	47	1.00
9100--9170	29	2.5	29	80	8	76	53	0	4	42	1.20
9163--9298	17	7.3	18	68	20	68	55	0	1	43	1.09
9138--9237	30	3.2	32	79	10	93	54	0	3	43	1.16
9571--9625	21	2.8	19	77	20	60	45	1	5	47	1.36
9683--9727	17	2.7	18	83	10	60	44	4	0	51	1.21
9711--9768	21	2.7	21	83	5	71	46	3	5	44	1.42
9757--9835	28	2.9	28	72	25	71	46	0	0	53	1.00
10766--11528	180	4.2	179	86	4	831	38	10	9	42	1.72
11074--11106	18	1.9	17	88	11	50	39	12	6	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12087--12519	182	2.4	180	80	1	465	39	8	9	42	1.67
13695--13734	19	2.0	21	86	13	59	52	0	2	45	1.14
13953--14079	11	11.5	11	68	14	64	41	3	0	54	1.22
14006--14084	25	3.0	26	75	12	81	44	1	1	53	1.16
14018--14062	16	2.8	16	80	13	56	48	2	0	48	1.13
14396--14434	19	2.1	18	90	4	60	43	0	0	56	0.99
14399--14437	18	2.1	19	85	4	53	48	0	0	51	1.00
15463--15500	20	1.9	20	94	0	67	44	7	0	47	1.32
15618--15688	19	3.8	17	75	15	61	49	0	4	46	1.21
16102--16144	15	2.8	16	82	7	52	46	0	0	53	1.00
17037--17069	12	2.7	13	86	13	52	69	0	0	30	0.88
18068--18194	52	2.4	54	88	4	195	44	10	17	27	1.81
18492--18516	9	2.8	9	100	0	50	44	8	0	48	1.32
19024--19098	26	3.1	24	67	19	57	48	0	0	52	1.00
19062--19109	25	1.9	25	82	0	60	50	4	0	45	1.21
19019--19132	47	2.4	47	80	16	119	49	1	0	48	1.17
19120--19194	34	2.2	33	80	15	82	46	1	4	48	1.29
19516--19638	15	7.8	16	66	25	57	45	3	0	50	1.23
19568--19638	19	3.5	19	73	14	61	45	2	0	52	1.15
19788--19846	22	2.6	22	80	17	59	47	1	5	45	1.34
21030--21099	25	2.7	25	82	10	70	48	2	2	45	1.32
21083--21121	20	1.9	20	89	5	60	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21439--21494	24	2.4	22	85	14	69	39	1	0	58	1.08
21454--21500	12	3.8	12	78	13	51	38	0	0	61	0.96
21450--21510	24	2.5	23	82	12	68	44	0	0	55	0.99

Tables:   1

The End!