Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168391.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21627
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Found at i:2091 original size:20 final size:20
Alignment explanation
Indices: 2068--2106 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
2058 ATCAACAACG
*
2068 GATGAAAAATGAAAAAAGAT
1 GATGAAAAAAGAAAAAAGAT
2088 GATGAAAAAAGAAAAAAGA
1 GATGAAAAAAGAAAAAAGA
2107 AAAAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.21, T:0.10
Consensus pattern (20 bp):
GATGAAAAAAGAAAAAAGAT
Found at i:2101 original size:7 final size:7
Alignment explanation
Indices: 2091--2124 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
2081 AAAAGATGAT
2091 GAAAAAA
1 GAAAAAA
2098 GAAAAAA
1 GAAAAAA
2105 GAAAAAA
1 GAAAAAA
*
2112 -ACAAAA
1 GAAAAAA
2118 GAAAAAA
1 GAAAAAA
2125 AAGAAGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:2109 original size:12 final size:12
Alignment explanation
Indices: 2094--2152 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
2084 AGATGATGAA
2094 AAAAGAAAAAAG
1 AAAAGAAAAAAG
*
2106 AAAAAAACAAAAG
1 AAAAGAA-AAAAG
2119 AAAA-AAAAGAAG
1 AAAAGAAAA-AAG
**
2131 -AAAGAAATGAG
1 AAAAGAAAAAAG
*
2142 AAATGAAAAAA
1 AAAAGAAAAAA
2153 AGAGATTCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
11 7 0.19
12 21 0.57
13 9 0.24
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:2109 original size:13 final size:12
Alignment explanation
Indices: 2093--2133 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
2083 AAGATGATGA
2093 AAAAAGAAAAAAG
1 AAAAA-AAAAAAG
2106 AAAAAAACAAAAG
1 AAAAAAA-AAAAG
*
2119 AAAAAAAAGAAG
1 AAAAAAAAAAAG
2131 AAA
1 AAA
2134 GAAATGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:3440 original size:42 final size:42
Alignment explanation
Indices: 3363--3539 Score: 290
Period size: 42 Copynumber: 4.3 Consensus size: 42
3353 ATGATTGTCA
3363 AGGAGCAATTTAC-TTTCCAAAGTTCCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAG-T-CGTGGTGCCTCTGTTTAG
*
3404 AGGAGCAATTTACTTTTCTAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
3446 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
3488 AGGAGCATTTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
3529 AGGAGCAATTT
1 AGGAGCAATTT
3540 GGTGCCTCTA
Statistics
Matches: 129, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
40 3 0.02
41 53 0.41
42 73 0.57
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:3514 original size:83 final size:83
Alignment explanation
Indices: 3363--3539 Score: 288
Period size: 83 Copynumber: 2.1 Consensus size: 83
3353 ATGATTGTCA
*
3363 AGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCTAAAGT
1 AGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGT
3428 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
*
3446 AGGAGCAATTTACTTTTCCAAAG-T-CGTGGTGCCTCTGTTTAGAGGAGCATTTTA-TTTTCCAA
1 AGGAGCAATTTAC-TTTCCAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAA
3508 AGTCGTGGTGCCTCTGTTTAG
63 AGTCGTGGTGCCTCTGTTTAG
3529 AGGAGCAATTT
1 AGGAGCAATTT
3540 GGTGCCTCTA
Statistics
Matches: 89, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
82 3 0.03
83 53 0.60
84 33 0.37
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (83 bp):
AGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:3542 original size:26 final size:26
Alignment explanation
Indices: 3513--3565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3503 TCCAAAGTCG
*
3513 TGGTGCCTCTGTTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
3539 TGGTGCCTCTATTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
3565 T
1 T
3566 ACTTTCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (26 bp):
TGGTGCCTCTATTTAGAGGAGCAATT
Found at i:3583 original size:67 final size:67
Alignment explanation
Indices: 3472--3606 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 67
3462 TCCAAAGTCG
* * *
3472 TGGTGCCTCTGTTTAGAGGAGCATTTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
3537 TT
66 TT
* *
3539 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTTGTGGTGGCTCTGTTTAGAGGAGCAA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
3604 TT
66 TT
3606 T
1 T
3607 ACTTTCAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (67 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
TT
Found at i:3596 original size:41 final size:41
Alignment explanation
Indices: 3539--3680 Score: 203
Period size: 41 Copynumber: 3.5 Consensus size: 41
3529 AGGAGCAATT
* *
3539 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTTG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
3580 TGGTGGCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * *
3621 TGGTGCCTTTGTGTAGAGGAGCAATTTATTTTCCAAAGTCG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
3662 TTGAGCCTCTGTTTAGAGG
1 TGGTGCCTCTGTTTAGAGG
3681 GGCTTTGGTC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (41 bp):
TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
Found at i:3620 original size:108 final size:109
Alignment explanation
Indices: 3430--3647 Score: 357
Period size: 108 Copynumber: 2.0 Consensus size: 109
3420 TCTAAAGTCG
*
3430 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* * * *
3495 TTTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATT
66 ATTTACTTTCAAAAGTCGTGGTGCCTCTGTGTAGAGGAGCAATT
* *
3539 TGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTCCAAAGTTGTGGTGGCTCTGTTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
3603 ATTTACTTTCAAAAGTCGTGGTGCCTTTGTGTAGAGGAGCAATT
66 ATTTACTTTCAAAAGTCGTGGTGCCTCTGTGTAGAGGAGCAATT
3647 T
1 T
3648 ATTTTCCAAA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 73 0.72
109 28 0.28
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (109 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
ATTTACTTTCAAAAGTCGTGGTGCCTCTGTGTAGAGGAGCAATT
Found at i:3701 original size:1 final size:1
Alignment explanation
Indices: 3691--3744 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
3681 GGCTTTGGTC
* * * * * *
3691 AAAAACAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAAATAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3745 TGACAATGTT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:3706 original size:10 final size:10
Alignment explanation
Indices: 3691--3743 Score: 67
Period size: 10 Copynumber: 5.5 Consensus size: 10
3681 GGCTTTGGTC
3691 AAAAACAAAA
1 AAAAACAAAA
3701 AAAAAC--AA
1 AAAAACAAAA
3709 AAAAAC-AAA
1 AAAAACAAAA
3718 AAAAACAAAA
1 AAAAACAAAA
*
3728 AAAAATAAAA
1 AAAAACAAAA
3738 CAAAAA
1 -AAAAA
3744 ATGACAATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
8 8 0.21
9 8 0.21
10 18 0.46
11 5 0.13
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:3727 original size:24 final size:23
Alignment explanation
Indices: 3690--3744 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
3680 GGGCTTTGGT
3690 CAAAAACAAAAAAAAACAAA-AAAA
1 CAAAAA-AAAAAAAAA-AAATAAAA
3714 CAAAAAAAACAAAAAAAAATAAAA
1 CAAAAAAAA-AAAAAAAAATAAAA
3738 CAAAAAA
1 CAAAAAA
3745 TGACAATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (23 bp):
CAAAAAAAAAAAAAAAAATAAAA
Found at i:3731 original size:18 final size:18
Alignment explanation
Indices: 3691--3730 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
3681 GGCTTTGGTC
3691 AAAAACAAAAAAAAACAA
1 AAAAACAAAAAAAAACAA
3709 AAAAAC-AAAAAAAACAA
1 AAAAACAAAAAAAAACAA
3726 AAAAA
1 AAAAA
3731 AATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAACAAAAAAAAACAA
Found at i:3737 original size:9 final size:9
Alignment explanation
Indices: 3691--3731 Score: 66
Period size: 9 Copynumber: 4.6 Consensus size: 9
3681 GGCTTTGGTC
3691 AAAAACAAA
1 AAAAACAAA
3700 AAAAA-ACAA
1 AAAAACA-AA
3709 AAAAACAAA
1 AAAAACAAA
3718 AAAAACAAA
1 AAAAACAAA
3727 AAAAA
1 AAAAA
3732 ATAAAACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.03
9 28 0.93
10 1 0.03
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:3972 original size:3 final size:3
Alignment explanation
Indices: 3946--3987 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
3936 CCTTCTTTTG
3946 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
3988 GTATATCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.11
3 25 0.71
4 6 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:4061 original size:20 final size:18
Alignment explanation
Indices: 4027--4070 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
4017 TATTTATATG
4027 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
4046 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
4065 TAATTT
1 TAATTT
4071 TTTTTCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:4633 original size:11 final size:11
Alignment explanation
Indices: 4617--4646 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
4607 ATCCCAGAAA
*
4617 CCGGTGATCTT
1 CCGGTGAACTT
4628 CCGGTGAACTT
1 CCGGTGAACTT
4639 CCGGTGAA
1 CCGGTGAA
4647 AAAACCCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (11 bp):
CCGGTGAACTT
Found at i:4666 original size:20 final size:20
Alignment explanation
Indices: 4637--4688 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
4627 TCCGGTGAAC
*
4637 TTCCGGTGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
4657 TTCCGATGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
* *
4677 ATCCGACGAAAA
1 TTCCGATGAAAA
4689 TCTCACCGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.25, G:0.17, T:0.13
Consensus pattern (20 bp):
TTCCGATGAAAAAACCCAGA
Found at i:5054 original size:11 final size:10
Alignment explanation
Indices: 5029--5053 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
5019 TTTTTTTTAA
5029 TTTTTGAATT
1 TTTTTGAATT
5039 TTTTTGAATT
1 TTTTTGAATT
5049 TTTTT
1 TTTTT
5054 TATTTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (10 bp):
TTTTTGAATT
Found at i:5135 original size:17 final size:16
Alignment explanation
Indices: 5101--5140 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5091 TTAGATTAGG
*
5101 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
5117 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
5134 TTTATTT
1 TTTATTT
5141 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:5147 original size:17 final size:17
Alignment explanation
Indices: 5127--5174 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
5117 TTTATCTTAA
5127 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
5143 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
5161 TTTCTATTTTTATT
1 TTT-TATTTTTATT
5175 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:5174 original size:14 final size:14
Alignment explanation
Indices: 5127--5184 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5117 TTTATCTTAA
5127 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
5139 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
5153 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
5168 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
5182 TTT
1 TTT
5185 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:5189 original size:17 final size:17
Alignment explanation
Indices: 5150--5189 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
5140 TTTGTTTTAC
*
5150 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
5167 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
5181 TTTTCTTTA
1 TTTTCTTTA
5190 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:5347 original size:117 final size:114
Alignment explanation
Indices: 5192--5542 Score: 519
Period size: 117 Copynumber: 3.0 Consensus size: 114
5182 TTTCTTTAAA
* * *
5192 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGGATCAATTTTCCTTGAA
1 TAAAAAT--AAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AA
* *
5257 AATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
62 AAT-AAAATTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCC
*
5312 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT
* *
5377 AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
65 AAAATTTC-AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCC
5429 TAAAAATAAATTTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTAAGAAT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA-AAT
5492 -AAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
65 AAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
5541 TA
1 TA
5543 CACAAAGAAA
Statistics
Matches: 216, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
112 29 0.13
113 14 0.06
114 8 0.04
115 10 0.05
116 41 0.19
117 100 0.46
118 7 0.03
120 7 0.03
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (114 bp):
TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATA
AAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
Found at i:5357 original size:58 final size:58
Alignment explanation
Indices: 5192--5539 Score: 524
Period size: 59 Copynumber: 6.0 Consensus size: 58
5182 TTTCTTTAAA
* * *
5192 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGGATCAATTTTCCT
1 TAAAAAT--AAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * * * *
5253 TGAAAATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
1 TAAAAAT-AAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5312 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
5370 TAAAAATAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
5429 TAAAAATAAATTTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5485 TAAGAATAAA-TTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
5540 CTACACAAAG
Statistics
Matches: 267, Mismatches: 17, Indels: 11
0.91 0.06 0.04
Matches are distributed among these distances:
55 25 0.09
56 33 0.12
57 35 0.13
58 60 0.22
59 102 0.38
60 6 0.02
61 6 0.02
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (58 bp):
TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:6888 original size:26 final size:26
Alignment explanation
Indices: 6859--6911 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6849 CCGATCTGAT
6859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6911 C
1 C
6912 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:9393 original size:26 final size:26
Alignment explanation
Indices: 9364--9416 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
9354 CCGGTCCAAT
9364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9416 C
1 C
9417 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10293 original size:26 final size:26
Alignment explanation
Indices: 10257--10309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10247 CTGGTCCGAT
10257 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10309 C
1 C
10310 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10898 original size:882 final size:881
Alignment explanation
Indices: 7749--12259 Score: 6092
Period size: 892 Copynumber: 5.1 Consensus size: 881
7739 CAAGCCTCAA
7749 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGAC
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--G-C
* * * *
7814 GGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGTTGGTAGGTG
63 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
7879 GGTTTAGGCACATCTTCATGTTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTT-ATG--------TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
7944 TGGTGCCTTAAGGCTTCACATCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
184 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
8009 TTGAAACTTTTTACGG-CCTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
249 TTGAAACTTTTTATGGTTC-AAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* * * *
8073 TGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAGTGT
313 GGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
8138 ACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGC
378 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
8203 AAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
443 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
8268 GGGCCAATATAAGCACCAAGTACCAGCACACATCGTACATCATGTGCGCACACCCCCTCGGCCCC
508 GGGCCAATATAAG-ACCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCC
* * * *
8333 CCGATCGTCGAA-ACCAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCGGTGATGGTGCCCCGA
572 CCGATCGCCGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGA
* * * ** *
8396 CAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCGAGCATGTGCTGCCACAACCCTTGGTCTGG
637 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGG
*
8461 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGATA-TCCGTATGCCTAAG
702 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAG
* * *
8525 TTAACCCACGAAACGAGCGTGCGGGCACTCTGCCGGCCAGAGGGGCGGGATGCTCAAGCC-AGGG
766 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGA-GG
* * * *
8589 ATCGATCGGGTCTCCCTCTGCGTGCTGCCGATCTTGCAGCCGTAA-CTCTCGG
830 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAACCT-TCGG
* ** *
8641 TCTGATCTGATCTTACTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGC
* * *
8706 GGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTG
63 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
8771 GGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATC-T--TA----TG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
8836 TGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTTTATTTTTCATGATTT
184 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
** * *
8901 TTGAAACTTTTTATGACTCAAGATTTTTTAAAAATATTTTGGAAGGAGTTTTGGCCCCAAACTTG
249 TTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* *
8966 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGCA
314 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
9031 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTACTGGCA
379 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG---CTACTGGCA
* *
9096 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAAGGTTTGATGAGGGATA
441 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
9161 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-TCACATTATGTGCGCACA-CCCCCCGAC
506 GGGGGCCAATATAA-GACCAAGTACCAGCACCCATCGT-ACATCATGTGCGCACACCCCCCCG-G
** * ** * * *
9224 CCCCCCGATCATCAAACCCCAATGCCGTTGGTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCC
568 CCCCCCGATCGCCGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCC
* * * * * *
9289 CC-AGCGAAGAAAAATGCGGCACCAGCACATGCTCGACCCCAGCATTTTCTGCCGTAACCCTCGG
633 CCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGG
*
9353 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
697 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
9418 TAAGTCAACACACGAATCGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCTCAAGTCG
762 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCG
* * * ** * *
9483 AGGATCGACCGGGTCCCCTTCTGCGTGCTGCTGATCCTATTGTCGCAACCCTT-AG
827 AGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAA-CCTTCGG
* * * *
9538 TCTGGTCCGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCGA-TAGAACGAGTAGA
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAG--G-
* * *
9602 CGGGCGGGCATTACT-CCGGCCAGAGAGATGGGAT-CGCAAGTCGTGGATCGATAGGGTGGTAGG
62 CGGGCGGGCACTA-TGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
9665 TGGGCTTAGGCATATCTTCATGTTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTGATAC
126 TGGGTTTAGGCACATCTT-A--------TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
9729 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
182 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
9794 TTTTGAAACTTTTTGTTGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACT
247 TTTTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACT
* *
9859 TGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAGTG
312 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
9924 TACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTC-GAATACTTTAATGGTTACTGGCA
377 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCA
* * *
9988 GCAAACCTGTAAAATCTAAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATA
441 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
10053 GGGGGCCAATATAAGCACCAAGTACCAGCACCCATCATACATCATGTGCGTACACCCCCCCGGCC
506 GGGGGCCAATATAAG-ACCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCC
** * *
10118 CCTTGATCGCCAGAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCC
570 CCCCGATCGCC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCC
* * * *
10183 TGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTC
634 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTC
* *
10248 TGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
699 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
10313 AGTTAACCCACGAAACGAGCGTGCGGGCGCTCTGCCGGCCAGACGGGCGGGATGCTCAAGCC-AG
764 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGA-
* * * *
10377 GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCTTGCAGCCGTAACCTTCGG
828 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAACCTTCGG
* * ** *
10431 TCCGGTCCGATCTTACTCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGGCGGG
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGG
* * *
10496 TGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
10561 TTAGGTACATC-TATGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAG
131 TTAGGCACATCTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
10625 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCATTTTTCACGATTTTTGAAACTTTTT
196 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
** * *
10690 ATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTCGGCCCCAAACTTGGTTGATGTGATC
261 ATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC
* *
10755 CTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTC-ATATTGTACAAGATTTTGT
326 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGT
* *
10819 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTGAATGGCTACTGGCAGCAAACCTGTAAAA
390 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
10884 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
455 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
10949 GAGCCAAGTACTAGCACCCACCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCCG
520 GA-CCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCG-CCG
* * * ** *
11014 AACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTTCGACGATGGTGCCCCGACGAAGAAAAT
582 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAA
* *
11079 TGTGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCATGGTCCGGTCCGATCTTA
647 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTA
* * * * *
11144 CACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAATCAACCCATGA
712 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * **
11209 AATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGT-AAGCCGAGGATCGGCCGGGT
777 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-TCAAGCCGAGGATCGATCGGGT
* * * * *
11273 CCCCCTCTGCATGCTGCCGAACCTACTGCCGCAACCCTCAG
841 CCCCCTCTGCGTGCTGCCGATCCTACAGCCGCAACCTTCGG
* *
11314 TGTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCGACGAAACGAGCGGGC
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGC
* * *
11378 GGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTG
63 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
11443 GGTTTAGGCACATCTTATATTTCTGTGTGCCAATGCCATTTTTATTGCTTGTAAATTTATACAAT
128 GGTTTAGGCACATC-T-TA------TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
11508 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTT
185 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** ** * * * *
11573 CAAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTCGGCAGGAGTTTCGGTCCCAAACTTGG
250 TGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
11638 TAGACGTGATCCCTGTATTTTTGTTGGTATGCAC-AAAAAATTCAGCTAAAAATTCGAAGTTTAC
315 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
11702 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
380 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
11767 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
445 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** * * *
11832 GCCAATATAAGGGCTAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCTCCG
510 GCCAATATAAGACCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCG
* ** * * **
11896 ATCGCCGGAGCCTTAATG-CGCCGGTCAGGTTCTCTGATGATGCTCCGATGATGGTGCCCCGGTG
575 ATCGCC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACG
* * * * * *
11960 AAGAAAAATGCGGTACCAGCACATG-ACAAGCCCA-CATGTGCTGCCGTAACCCTCGGTCCAGTC
639 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTC
*
12023 CGATCTTAGACTGGGAAT-AACTCCGTATGTTTAGACTGAGG-ATGAACTCCGTATGCCTAAGTC
704 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTC
* ** * *
12086 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGTAGTGGGATGCGCAAGCCGAGGATC
768 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGAGGATC
* * * * * *
12151 GGTGGGGTCCCCTTCTGCGTCCTGTCGATCCTACTA-TCGCAACCCTT-GG
833 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTAC-AGCCGCAA-CCTTCGG
12200 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
12260 TGGGCGTGCG
Statistics
Matches: 3203, Mismatches: 344, Indels: 152
0.87 0.09 0.04
Matches are distributed among these distances:
881 15 0.00
882 390 0.12
883 304 0.09
884 5 0.00
885 77 0.02
886 169 0.05
887 63 0.02
888 9 0.00
889 66 0.02
890 47 0.01
891 50 0.02
892 553 0.17
893 477 0.15
894 198 0.06
895 387 0.12
896 76 0.02
897 306 0.10
898 9 0.00
899 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGG
CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
ATGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
ACCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGAACC
CCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGAGGATCGATCGGGTCCCCC
TCTGCGTGCTGCCGATCCTACAGCCGCAACCTTCGG
Found at i:11191 original size:26 final size:26
Alignment explanation
Indices: 11140--11192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11130 CCGGTCCGAT
* *
11140 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
11166 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
11192 C
1 C
11193 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:12056 original size:25 final size:26
Alignment explanation
Indices: 12028--12077 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12018 CAGTCCGATC
12028 TTAGACTG-GGAAT-AACTCCGTATGT
1 TTAGACTGAGG-ATGAACTCCGTATGT
12053 TTAGACTGAGGATGAACTCCGTATG
1 TTAGACTGAGGATGAACTCCGTATG
12078 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGAGGATGAACTCCGTATGT
Found at i:13411 original size:26 final size:27
Alignment explanation
Indices: 13375--13432 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
13365 CTGGTCCGAT
*
13375 CTTAGACTGGGAATGAACTCGGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
13401 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
13428 CTTAG
1 CTTAG
13433 TCAACCCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:14293 original size:26 final size:26
Alignment explanation
Indices: 14264--14316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14254 CTGATCCGAT
*
14264 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14290 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14316 C
1 C
14317 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15925 original size:26 final size:26
Alignment explanation
Indices: 15888--15938 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15878 TGGTCTGATC
*
15888 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTAGGAATGAACTCCATATGT
*
15914 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
15939 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:16354 original size:26 final size:26
Alignment explanation
Indices: 16318--16373 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16308 CCGGTCCGAT
16318 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16344 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16370 CTTA
1 CTTA
16374 AGCCAACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17101 original size:26 final size:26
Alignment explanation
Indices: 17056--17108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17046 CCGGTCCGAT
17056 CTTAGACTGAGAAATGACTCCATATG
1 CTTAGACTGAGAAATGACTCCATATG
* *
17082 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGAAATG-ACTCCATATG
17108 C
1 C
17109 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAAATGACTCCATATG
Found at i:18004 original size:26 final size:26
Alignment explanation
Indices: 17954--18006 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17944 CTGGTCCGAT
* * **
17954 CTTAGACTGGGAATGAAGTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17980 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18006 C
1 C
18007 CTAAGTCACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18879 original size:26 final size:26
Alignment explanation
Indices: 18843--18895 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18833 CTGGTCTGAT
18843 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
18869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
18895 C
1 C
18896 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19524 original size:887 final size:890
Alignment explanation
Indices: 16344--21619 Score: 5275
Period size: 887 Copynumber: 6.0 Consensus size: 890
16334 ACTCCATATG
** * * * *
16344 CTTAGACTGGGAATGAACTCTATATGCTTAAGCCAACCGATGAAATGAGCGGGCAAGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAA-GAGC--G--AGCGGGCACA
* * * *
16409 ACGCGGGCCAGAGAGATGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGCAC
61 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * * *
16474 ATCTTCGTTTTTCTGCATGCCAATACCATCTTTATGGCTTGTAAACTCATACAATGGTCCCTTAA
126 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
16539 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTT
191 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTT
* *
16604 TACGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGA-TTTTCGGTCCCAAACTTGGTAGACGTG
256 TACGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTT-GGCCCCAAACTTGGTAGACGTG
* * * * *
16667 ATCCTTGTATTTTTTTTGGAATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTATATAAGATTTT
319 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTT
*
16732 GTGACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
384 GTGACCATTTC-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
16797 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATA
448 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * **
16862 TAAGGGCCAAGTACTAGCACCCATTGCACATTATGTTCGCACACCCCCCCGGCCCCCCCGATCAC
513 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGT
* * * * *
16927 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTTCCCCGGTGAAGAA
577 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAA
* * * * *
16992 AAATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTTGGTCCGGTCCGATC
642 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATC
*
17057 TTAGACTGAGAAATG-ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
707 TTAGACTG-GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
17121 ACGGAACGAACGTGAGGGCACTCAGCCAGCCAGAGGGGC-GGAAGCGTAAGCCGGGGATCGATCG
771 ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
* ** * * *
17185 GGTCCCCCTTTGCGTGCTGCCTGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
836 GGTCCCCCTCTATGTGCTGCC-GATCCTACTGCCACAACCCTCGGTCCGGTCCGAT
* * *
17241 CTTAGACTGGGAATGAACT-CGTTTGCCTAAGCCAACCGATGAAAGGAGCGGGTGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAA-GA--------GCGAGCGGG
* * * *
17305 CACTAATGCCGACCA-AGAGGCGGGAT-CGCAAAG-CGTGGATCGATAGGGATGGGTCGGTGGGT
57 CAC-AACGCCGGCCAGAGAGACGGGATGCGC-AAGCCGTGGATCGATAGGG-T-GGTAGGTGGGT
* * * * *
17367 TTAGGTACATCTTTATATTT-TAACGGGTGCCAATGCCA-TTTTATGGCTTGTCAATTCGTACAA
118 TTAGGCACATCTTCATATTTCT-AC--ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-A
* *
17430 ATGGTCCCTT-A-CTTTCAACGTGAAGTTTCCATGGCAAGAC-AGCTCGTTTTGTATTTTTCACA
179 ATGGTCCCTTAAGCCTTC-ACGTGAAGTTT-CATGGCAAGACGA-CTCGTTTTCTATTTTT--CA
* * *
17492 T-ATTTTTGAAAA-TTTTTACGGTTTGGGA-TTTTTAAAATTTTTT-GAAA-GAGTTTTAAG--C
239 TGATTTTT-AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GGCCC
*
17550 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAAAAACTC
302 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
17615 GAAGTGTGTAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTAC
367 GAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
17680 TGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
432 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *
17745 GGATAGGGGGCAAAAATGAGGGCCAAGTACCAGCCCCCATCGCACATCATGTGCACACACCCCCC
497 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC
* * * * * * * * *
17810 CCGGCCCACCCGTTCGTCAGAACCCCAATGTCATCGATCAGGTTCTTCGACGATGCTCCGACGAT
560 CCGACCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
** * *
17875 GGTGCCCTGGCGAAGAAAAAT--GGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACC
625 GGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *** *
17938 CTTGGTCTGGTCCGATCTTAGACTGGGAATGAAGTTTGTATGCTTAGACTAGGAATGAACTCCGT
690 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
* * * ** **
18003 ATGCCTAAGTCACCCCACGAAACGAGAGTACGGGTGCTC-GACCGGCCAGAAGGGGTAGGATGCG
755 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG-CCGGCCA-AAGGGGCGGGATGCG
* * * * * * * *
18067 CAAGTCGGGGATCAACCGCGTCCCCCTCTATGTGCTGTCGATCTTGCTACCACAA-CCTTGGTCC
818 CAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCACAACCCTCGGTCC
*
18131 GGTCCTAT
883 GGTCCGAT
* * *
18139 CTTAGACTGGGAATGAAACTCCGTATGCCTAAGCTAACCGAAGAAATGAGCGGGCGGGCACTACG
1 CTTAGACTGGGAATG-AACTCCGTATGCCTAAGCTAACCGACGAAA-GAGCGAGCGGGCACAACG
* *
18204 TCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
64 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
18269 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTGT-AATTTATACAATGGT-CCTTAAGC
129 TTCATATTTCTACATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGC
*
18332 CTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTTCATGATTTTCAAAACTTTTT
193 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCATGATTTTTAAAACTTTTT
* * * * *
18396 ATGGTTCGAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAATCTTGGTAGACATGATC
257 ACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18461 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCCAAAAAATCGAAGTGTATAAGATTTTGTG
322 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTG
*
18526 ACCATTT-GAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
387 ACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * *
18590 ATGAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATTTAAG
452 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* ** * * *
18655 GGCCAA-TTCCAGCACCCATCATACATCATGTGCGCATACCCCCCAACCCCCCCGATCGTCAGAA
517 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAA
* * * * * *
18719 CCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTTCCCCAACGAAAAAAAATA
582 CCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATG
* * * * * * * *
18784 CGGCACCAACACATGCCCAAGCCTAGCATCTACTGCCGCAGCACTCGGTCTGGTCTGATCTTAGA
647 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
18849 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
712 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
18914 TGAGCGTGCGGGCACTCATCCGGCCAAACGGGCGGGATGCTCAAGCCGAGGATCGACCGGGTCCT
777 CGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCC
* * * * ** * *
18979 GCTATATGTGTTGCCAATCCTACTGCTGCAACCCTCCGTCCGGTCCAAT
842 CCTCTATGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGGTCCGAT
* * *
19028 CTTGGACTGGGAATGAACTCCGTATGCCTAAGCT-ACATGACG-AA-A-CGAGCGGGCACAACGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAAC-CGACGAAAGAGCGAGCGGGCACAACGC
*
19089 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCT
65 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
19154 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCT
130 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
19219 TCACGTGAAGTTTCATGGCAAGACCACTCGTTTTTTATTTTTCATGATTTTTAAAACTTTTTGTG
195 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACG
* *
19284 GTACGAGATTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
260 GTTCGAGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
19349 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGAC
324 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGAC
19414 CATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
389 CATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
19479 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
454 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
19544 CCAAGTA-CAGCACCCATCGTACATCATGTGTGCACACCCCCCGACTCGCCCAATCGTCGGAACC
519 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACC
** * * * *
19608 CCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCTGACGTTGGTGCCCCTA-CGAAGAAAAATGC
584 CCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-AGCGAAGAAAAATGC
* * * ** * *
19672 GACACCAGCACTTGCCCGAGTCCAGCATGTGCTGTTGCAACCTTCGGTCCGGTCCGATCTTAGAC
648 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
*
19737 TGGGAATG------A-A--C-T---CT--G--T--A-T--G---G-CTAAGTCAACCCATGAAAC
713 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
19776 GAGAGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGGGGATCGATCGGGTCCCT
778 GAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
* * * * * **
19841 CTCTGTGTGCTGTCGATCCTACTGTCACAACCTTCAGTTTGGTCCGAT
843 CTCTATGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGGTCCGAT
* * *
19889 CTTAGACTGGCAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGAGCGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAA-GAGCGAGCGGGCA--CA--
* * *
19954 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGTATCGATAGGGTGGTAGGTGAGTTTAGGCAC
61 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
20019 ATCTTCATATTTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTA
126 ATCTTCATA-TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
20084 AGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTTGAAATTTT
190 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTT
* * * *
20149 TTACGGTTCTG-GATTTTTGAAAATTTTTTCGAATGGGGTTTTGGCCCCTAACTTGGTAGACGTG
255 TTACGGTTC-GAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
20213 ATCCTTGTAGTTTTT-TTGGTATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTT
319 ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTT
* * *
20277 TGTGAACAGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
383 TGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
20342 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCAAATA
448 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
20406 TAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCGCCCCCG-GCCCCCCGATCA
513 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGACCCCCCCGATCG
* * * * * * * **
20470 CCGGAACCTCAATGTCACCGGCCAGGTTCTCTGACAATGCTCCGGTGATGGTGCCCCAGCGAAGA
576 TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGA
** * * * * * *
20535 AAAATGTAGCACCACCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGATCTGAT
641 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * *
20600 CTTAGACTGGGAATGAACTCCTTAT-CTTAGATTGGAGAATAAACTCCGTATGCC-AAGTCAAAC
706 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGG-GAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
20663 CACGAAAGGAGCGTGGGGGCGCTCAGCCAGCCATA-GGG-GTGATGCGCAAGCCGGGAAGATCGG
770 CACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGG--GATCGA
* * * * * *
20726 CC--AT-CCCCTC----TG-T---G-T-CTAC-G----TACCCTCGAT-TGATCTG-T
833 CCGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGGTCCGAT
* * * *
20764 CTTATACTTGGGAAAT-ATACT--ATAT-CTCTAAGCTCATACTCTGACG-AATA-CGAGC-AG-
1 CTTAGAC-TGGG-AATGA-ACTCCGTATGC-CTAAGCT-A-AC-C-GACGAAAGAGCGAGCGGGC
* * *** * * * * * * *
20821 ACAAC-ACGTACTCTATCTA-TCTGGCCATAGAC-AAATCAGT-CATCTATA--GTGGTTA--T-
58 ACAACGCCG-GC-C-AGAGAGAC-GG-GAT-G-CGCAAGCCGTGGATCGATAGGGTGG-TAGGTG
* * *
20877 -G-AT-GG--CATC--CATA---AT-CA-GCCAATGTCA--TTTATGG--T-TAAATTCATACAA
115 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-A
* * * *
20925 ACGAT-CCTTAAGCCTCTCA--TGAAGTTTCATGGCAAGACGTA-TC--TCTCTACATTTTCA--
179 ATGGTCCCTTAAGCCT-TCACGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTA-TTTTTCATG
* * *
20982 A----AAAAACTTTTTAC-G-TCG-GTATTTTTTTTAAAA---TTT-GTAA-TAGTTTTGGCCCC
241 ATTTTTAAAACTTTTTACGGTTCGAG-A--TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
**
21035 AAAAATGGTAGACGTGATCCTTGTATTTTT-TGTGGCATGCACAAAAAAA-T-A--T------T-
303 AAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
21088 ---GT-TACAAGATTTTGTGACCATTT--AAAAAGTGTCCCAATTTCAGACACTTTAATGGCTAC
367 GAAGTGTATAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
21147 TAGCAGCAAACCTCT-AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAG
432 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
21210 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGAACA-CCCCC
497 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * *
21274 GA-CCCCCCAATCG-CTGGAA-CCCAATGCCGCTGGTTAGGTTCTCTGGCAATGCTCCGGCGATG
562 GACCCCCCCGATCGTC-GGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATG
* * * ** *
21336 GTG-CCCTG-G-TGAAAAAT---G--CCAGCACATGCTCGAGCTTAGCATGTGCTGCCGTAACCC
626 GTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * *
21393 TCGATCCGGTCCAATCTTAGTCTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
691 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
21458 TGCCTAAGTCAACCCATGAAACGAACGT-CGGGCACTCAGTCGG-CAGAGGGGTGGGATGCGCAA
756 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAA
* * * ** * * * *
21521 GCC-AGGATCGGCC-GGTCCCTCTCTACAT-CTGTCGATCCTACTGTCGC-ACCCTCAGTCCGGT
821 GCCGGGGATCGACCGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGGT
*
21582 -CTAGT
886 CCGA-T
21587 CTTAGAACT-GGAATGAACTCCGTATGCCTAAGC
1 CTTAG-ACTGGGAATGAACTCCGTATGCCTAAGC
21620 GAATCGAC
Statistics
Matches: 3720, Mismatches: 499, Indels: 394
0.81 0.11 0.09
Matches are distributed among these distances:
806 8 0.00
807 4 0.00
808 102 0.03
809 41 0.01
810 1 0.00
812 2 0.00
813 7 0.00
814 1 0.00
815 5 0.00
816 40 0.01
817 23 0.01
818 1 0.00
819 26 0.01
820 77 0.02
821 61 0.02
822 5 0.00
823 34 0.01
824 5 0.00
828 1 0.00
836 1 0.00
837 7 0.00
838 49 0.01
839 2 0.00
840 5 0.00
841 3 0.00
842 1 0.00
843 19 0.01
847 1 0.00
848 5 0.00
849 6 0.00
850 21 0.01
851 21 0.01
852 8 0.00
854 7 0.00
856 9 0.00
857 2 0.00
858 1 0.00
861 139 0.04
862 9 0.00
864 5 0.00
865 11 0.00
866 2 0.00
867 4 0.00
868 30 0.01
869 298 0.08
870 260 0.07
871 13 0.00
872 9 0.00
873 8 0.00
874 9 0.00
875 17 0.00
876 15 0.00
877 17 0.00
878 5 0.00
879 5 0.00
880 1 0.00
881 2 0.00
882 5 0.00
883 5 0.00
884 124 0.03
885 64 0.02
886 141 0.04
887 398 0.11
888 103 0.03
889 217 0.06
890 145 0.04
891 127 0.03
892 32 0.01
893 33 0.01
894 3 0.00
895 43 0.01
896 24 0.01
897 25 0.01
898 157 0.04
899 187 0.05
900 245 0.07
901 40 0.01
902 40 0.01
903 62 0.02
904 22 0.01
905 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAAGAGCGAGCGGGCACAACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG
TTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCA
TTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCC
AATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCACTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC
TATGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:20644 original size:26 final size:25
Alignment explanation
Indices: 20598--20646 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
20588 ATCTGATCTG
*
20598 ATCTTAGACTGGGAATGAACTCCTT
1 ATCTTAGACTGGGAATAAACTCCTT
*
20623 ATCTTAGATTGGAGAATAAACTCC
1 ATCTTAGACTGG-GAATAAACTCC
20647 GTATGCCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (25 bp):
ATCTTAGACTGGGAATAAACTCCTT
Found at i:21437 original size:26 final size:26
Alignment explanation
Indices: 21408--21460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21398 CCGGTCCAAT
* *
21408 CTTAGTCTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21434 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21460 C
1 C
21461 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.