Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168393.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_61, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142147
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 1 of 5
Found at i:63 original size:20 final size:20
Alignment explanation
Indices: 38--82 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
28 AAAGAACATT
*
38 TAAATATTACTTATTAATAA
1 TAAATATTAATTATTAATAA
* *
58 TAAATATTAATTATTTATTA
1 TAAATATTAATTATTAATAA
78 TAAAT
1 TAAAT
83 TATACTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TAAATATTAATTATTAATAA
Found at i:1325 original size:13 final size:15
Alignment explanation
Indices: 1292--1323 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
1282 TTAATAATTA
1292 TAAATTATAAATATT
1 TAAATTATAAATATT
1307 TAAATTA-AAATATT
1 TAAATTATAAATATT
1321 TAA
1 TAA
1324 TTTTTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATTATAAATATT
Found at i:1879 original size:20 final size:21
Alignment explanation
Indices: 1836--1885 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
1826 AAATAACATT
*
1836 TAAATATATACTTATTAATAA
1 TAAATATATAATTATTAATAA
* *
1857 TAAATAT-TAATTATTTATTA
1 TAAATATATAATTATTAATAA
1877 TAAAT-TATA
1 TAAATATATA
1886 CTTAAATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 17 0.68
21 7 0.28
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TAAATATATAATTATTAATAA
Found at i:2174 original size:21 final size:19
Alignment explanation
Indices: 2150--2194 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
2140 ATTTGTTTAT
2150 TATTAAATAAATAATATATAA
1 TATTAAATAAAT--TATATAA
*
2171 TATTAAATTAATTATATAA
1 TATTAAATAAATTATATAA
2190 T-TTAA
1 TATTAA
2195 TATTATATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 8 0.35
21 11 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TATTAAATAAATTATATAA
Found at i:2180 original size:26 final size:24
Alignment explanation
Indices: 2151--2199 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
2141 TTTGTTTATT
2151 ATTAAATAAATAATATATAATATTAA
1 ATTAAATAAATAAT-T-TAATATTAA
* *
2177 ATTAATTATATAATTTAATATTA
1 ATTAAATAAATAATTTAATATTA
2200 TATGTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 1 0.05
26 12 0.57
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
ATTAAATAAATAATTTAATATTAA
Found at i:2214 original size:15 final size:16
Alignment explanation
Indices: 2159--2214 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 16
2149 TTATTAAATA
2159 AATAA-TATATAATATT
1 AATAATTATATAAT-TT
2175 AAATTAATTATATAATTT
1 -AA-TAATTATATAATTT
*
2193 AAT-ATTATAT-GTTT
1 AATAATTATATAATTT
2207 AATAATTA
1 AATAATTA
2215 AATATAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
14 6 0.17
15 11 0.31
16 1 0.03
17 4 0.11
18 5 0.14
19 8 0.23
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
AATAATTATATAATTT
Found at i:2420 original size:20 final size:19
Alignment explanation
Indices: 2377--2435 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
2367 ATTATATATT
* *
2377 AATTGTATATAATATTAAAT
1 AATTATATATAATATT-AAC
2397 AATTATATATATATATTAAC
1 AATTATATATA-ATATTAAC
2417 AATTA-ATATGAAATATTAA
1 AATTATATAT--AATATTAA
2436 TAAATTAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.12
20 24 0.71
21 6 0.18
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (19 bp):
AATTATATATAATATTAAC
Found at i:2423 original size:24 final size:21
Alignment explanation
Indices: 2337--2415 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 21
2327 GACTTAACTA
* *
2337 ATATATATTAATTAAATTATTT
1 ATATATAAT-ATTAAATTAATT
2359 A-ATATACA-ATTATATATTAATT
1 ATATATA-ATATTA-A-ATTAATT
*
2381 GTATATAATATTAAA-TAATT
1 ATATATAATATTAAATTAATT
2401 ATATATATATATTAA
1 ATATATA-ATATTAA
2416 CAATTAATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
20 15 0.32
21 14 0.30
22 9 0.19
23 9 0.19
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (21 bp):
ATATATAATATTAAATTAATT
Found at i:2425 original size:21 final size:20
Alignment explanation
Indices: 2382--2446 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 20
2372 ATATTAATTG
2382 TATATAATATTAAATAATT-A
1 TATATAATATTAAA-AATTAA
*
2402 TATATATATATTAACAATTAA
1 TATATA-ATATTAAAAATTAA
2423 TATGA-AATATTAATAAATTAA
1 TAT-ATAATATTAA-AAATTAA
2444 TAT
1 TAT
2447 TTGTTAATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
20 17 0.44
21 21 0.54
22 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
TATATAATATTAAAAATTAA
Found at i:2586 original size:41 final size:42
Alignment explanation
Indices: 2541--2626 Score: 99
Period size: 41 Copynumber: 2.1 Consensus size: 42
2531 CTATAAATTA
2541 TTAATAACAAT-AT-TTAATTATATAAATTA-AATTATTAAT-AT
1 TTAATAA-AATGATATTAATTA-AT-AATTATAATTATTAATAAT
* *
2582 TTAATAAAATGTTATTAATTAATTATTATAATTATTAATAAT
1 TTAATAAAATGATATTAATTAATAATTATAATTATTAATAAT
2624 TTA
1 TTA
2627 TGGATTAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
40 7 0.18
41 20 0.51
42 12 0.31
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (42 bp):
TTAATAAAATGATATTAATTAATAATTATAATTATTAATAAT
Found at i:2615 original size:9 final size:10
Alignment explanation
Indices: 2570--2624 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
2560 ATATAAATTA
2570 AATTATTAAT
1 AATTATTAAT
* *
2580 ATTTAATAA-
1 AATTATTAAT
2589 AATGTTATTAATT
1 AA--TTATTAA-T
2602 AATTATT-AT
1 AATTATTAAT
2611 AATTATTAAT
1 AATTATTAAT
2621 AATT
1 AATT
2625 TATGGATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
9 9 0.25
10 14 0.39
11 11 0.31
13 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
AATTATTAAT
Found at i:2918 original size:15 final size:16
Alignment explanation
Indices: 2893--2923 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
2883 CCTTATTAAT
2893 TTTTGAAATAGTTCAA
1 TTTTGAAATAGTTCAA
2909 TTTT-AAATAGTTCAA
1 TTTTGAAATAGTTCAA
2924 ATATCTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (16 bp):
TTTTGAAATAGTTCAA
Found at i:3302 original size:22 final size:19
Alignment explanation
Indices: 3257--3294 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
3247 ATTTAAATTA
*
3257 ATATTTTAATAATATTATT
1 ATATTTTAATAATAATATT
3276 ATATTTTAATAATAATATT
1 ATATTTTAATAATAATATT
3295 GAATTATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATTTTAATAATAATATT
Found at i:3789 original size:20 final size:20
Alignment explanation
Indices: 3764--3802 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3754 AATTATAATT
*
3764 ATAATTTATTAGTAATATTA
1 ATAATTTAATAGTAATATTA
*
3784 ATAATTTAATATTAATATT
1 ATAATTTAATAGTAATATT
3803 TAATTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
ATAATTTAATAGTAATATTA
Found at i:3795 original size:14 final size:13
Alignment explanation
Indices: 3776--3806 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
3766 AATTTATTAG
3776 TAATATTAATAATT
1 TAATATTAAT-ATT
3790 TAATATTAATATT
1 TAATATTAATATT
3803 TAAT
1 TAAT
3807 TAAATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATATTAATATT
Found at i:4030 original size:26 final size:26
Alignment explanation
Indices: 4001--4075 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 26
3991 ATAATAATAA
4001 TAAATTATATTTATTAATAATTTATT
1 TAAATTATATTTATTAATAATTTATT
**
4027 TAAA-T-TATTTAAAAATAA-TTATT
1 TAAATTATATTTATTAATAATTTATT
*
4050 T-AATAAT-TTATATTAATAAATTTATT
1 TAAATTATATT-TATTAAT-AATTTATT
4076 AATATATAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
22 2 0.05
23 8 0.21
24 17 0.44
25 3 0.08
26 9 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TAAATTATATTTATTAATAATTTATT
Found at i:4072 original size:22 final size:24
Alignment explanation
Indices: 4047--4094 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
4037 AAAAATAATT
*
4047 ATTTAATAATTTATA-TTAA-TAA
1 ATTTAATAATATATAGTTAATTAA
*
4069 ATTTATTAATATATAGTTAATTAA
1 ATTTAATAATATATAGTTAATTAA
4093 AT
1 AT
4095 ATTTATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
23 4 0.18
24 5 0.23
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTAATAATATATAGTTAATTAA
Found at i:4179 original size:22 final size:21
Alignment explanation
Indices: 4154--4216 Score: 51
Period size: 22 Copynumber: 2.9 Consensus size: 21
4144 AAGAAAATTT
4154 TATTATTAAATATTAAATATAA
1 TATTATT-AATATTAAATATAA
4176 TATTTAATTAA-ATTAAAT-TAA
1 TA-TT-ATTAATATTAAATATAA
4197 T-TATATTTAATAATTAAATA
1 TAT-TA-TTAAT-ATTAAATA
4217 ATACTTTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 4 0.12
22 16 0.47
23 4 0.12
24 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TATTATTAATATTAAATATAA
Found at i:4362 original size:32 final size:31
Alignment explanation
Indices: 4304--4363 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
4294 TTATATTAAA
*
4304 AAATATAATATTAATTATATTAATAGTTTAT
1 AAATATAATATAAATTATATTAATAGTTTAT
4335 AAATATAATTATAAA-TATTATTAATAGTT
1 AAATATAA-TATAAATTA-TATTAATAGTT
4364 ATTTAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (31 bp):
AAATATAATATAAATTATATTAATAGTTTAT
Found at i:5306 original size:12 final size:12
Alignment explanation
Indices: 5285--5327 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
5275 TAATTTTAAC
5285 TATAATTTAATTA
1 TATAA-TTAATTA
*
5298 TATAATTAAATA
1 TATAATTAATTA
* *
5310 AATAATTATTTA
1 TATAATTAATTA
5322 TATAAT
1 TATAAT
5328 ATTATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 20 0.80
13 5 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TATAATTAATTA
Found at i:5337 original size:20 final size:19
Alignment explanation
Indices: 5314--5352 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
5304 TAAATAAATA
*
5314 ATTATTTATATAATATTATT
1 ATTAGTTATAT-ATATTATT
5334 ATTAGTTATATATATTATT
1 ATTAGTTATATATATTATT
5353 TTTAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
ATTAGTTATATATATTATT
Found at i:5351 original size:16 final size:16
Alignment explanation
Indices: 5324--5367 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
5314 ATTATTTATA
5324 TAATAT-TATTATTAGT
1 TAATATATATTATT-GT
*
5340 T-ATATATATTATTTT
1 TAATATATATTATTGT
5355 TAATATATATTAT
1 TAATATATATTAT
5368 AAGATTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TAATATATATTATTGT
Found at i:6155 original size:20 final size:20
Alignment explanation
Indices: 6125--6195 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
6115 ATCTATATAA
6125 AATTAATTTTAAAATATTA-T
1 AATT-ATTTTAAAATATTATT
*
6145 AGATTATTTTATAATA-TATT
1 A-ATTATTTTAAAATATTATT
* *
6165 AATTATTATAAATATATTAAT
1 AATTATTTTAAA-ATATTATT
*
6186 AATAATTTTA
1 AATTATTTTA
6196 TTATAATTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
19 11 0.27
20 16 0.39
21 14 0.34
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (20 bp):
AATTATTTTAAAATATTATT
Found at i:6169 original size:40 final size:39
Alignment explanation
Indices: 6125--6205 Score: 94
Period size: 40 Copynumber: 2.1 Consensus size: 39
6115 ATCTATATAA
* *
6125 AATTAATTTTAAA-ATATT-ATAGATTATTTTATAATATATT
1 AATT-ATTATAAATATATTAATA-ATAATTTTATAATA-ATT
*
6165 AATTATTATAAATATATTAATAATAATTTTATTATAATT
1 AATTATTATAAATATATTAATAATAATTTTATAATAATT
6204 AA
1 AA
6206 ATAACTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
39 12 0.33
40 21 0.58
41 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (39 bp):
AATTATTATAAATATATTAATAATAATTTTATAATAATT
Found at i:6185 original size:26 final size:25
Alignment explanation
Indices: 6156--6273 Score: 74
Period size: 26 Copynumber: 4.8 Consensus size: 25
6146 GATTATTTTA
6156 TAATATATTAATTATTATAAATATAT
1 TAATATATTAATTATTATAAATA-AT
*
6182 TAATA-A-TAATT-TTAT-TATAAT
1 TAATATATTAATTATTATAAATAAT
*
6203 TAAATAACTATTAA-TAATA-AAATAATT
1 T-AAT-A-TATTAATTATTATAAATAA-T
*
6230 TAATATTATTAA--ATT-TAAATATT
1 TAATA-TATTAATTATTATAAATAAT
6253 TAATATATTAATATCATTATA
1 TAATATATTAAT-T-ATTATA
6274 TTTATTATCT
Statistics
Matches: 72, Mismatches: 6, Indels: 27
0.69 0.06 0.26
Matches are distributed among these distances:
21 3 0.04
22 12 0.17
23 11 0.15
24 12 0.17
25 10 0.14
26 20 0.28
27 4 0.06
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TAATATATTAATTATTATAAATAAT
Found at i:6187 original size:29 final size:32
Alignment explanation
Indices: 6155--6222 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 32
6145 AGATTATTTT
*
6155 ATAAT-ATATTAATTATTA-TAAAT-A-TATTA
1 ATAATAAT-TTAATTATAATTAAATAACTATTA
*
6184 ATAATAATTTTATTATAATTAAATAACTATTA
1 ATAATAATTTAATTATAATTAAATAACTATTA
6216 ATAATAA
1 ATAATAA
6223 AATAATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 13 0.39
30 7 0.21
31 1 0.03
32 12 0.36
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATAATTTAATTATAATTAAATAACTATTA
Found at i:6214 original size:17 final size:18
Alignment explanation
Indices: 6194--6227 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6184 ATAATAATTT
*
6194 TATT-ATAATTAAATAAC
1 TATTAATAATAAAATAAC
6211 TATTAATAATAAAATAA
1 TATTAATAATAAAATAA
6228 TTTAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TATTAATAATAAAATAAC
Found at i:6338 original size:13 final size:13
Alignment explanation
Indices: 6320--6361 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
6310 GTTATTAATT
6320 TATTAATTATTAA
1 TATTAATTATTAA
*
6333 TATTAATATATTTA
1 TATTAAT-TATTAA
*
6347 -ATTAATTAATAA
1 TATTAATTATTAA
6359 TAT
1 TAT
6362 ATATTAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 4 0.17
13 15 0.62
14 5 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTAATTATTAA
Found at i:6366 original size:30 final size:32
Alignment explanation
Indices: 6314--6393 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 32
6304 AATTTAGTTA
* * *
6314 TTAATTTATTAATTATTAATATT-AA-TATAT
1 TTAATTAATTAATAATTAATATTAAACAATAT
6344 TTAATTAATTAATAA-TATATATTAAACAATAT
1 TTAATTAATTAATAATTA-ATATTAAACAATAT
*
6376 TTAA-TAATAAATAATTAA
1 TTAATTAATTAATAATTAA
6394 ATATAAAGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 2 0.05
30 18 0.43
31 12 0.29
32 10 0.24
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (32 bp):
TTAATTAATTAATAATTAATATTAAACAATAT
Found at i:7197 original size:27 final size:27
Alignment explanation
Indices: 7151--7202 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7141 ACTTATTTAT
*
7151 TATAATTATAACATTTATAAATAATAA
1 TATAATTATAACATTAATAAATAATAA
* * *
7178 TATAATTATTATATTAATAATTAAT
1 TATAATTATAACATTAATAAATAAT
7203 TTAAAATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
TATAATTATAACATTAATAAATAATAA
Found at i:7246 original size:26 final size:24
Alignment explanation
Indices: 7217--7345 Score: 82
Period size: 26 Copynumber: 4.9 Consensus size: 24
7207 AATATTAAAT
7217 TATTTATAAGATTAATGAAATTAATA
1 TATTTATAA-ATTAAT-AAATTAATA
* *
7243 TATTAAATATATT-ATAATATTTAATA
1 TATT-TATAAATTAATAA-A-TTAATA
7269 TAATTTATAAATTAACTAAATTAATA
1 T-ATTTATAAATTAA-TAAATTAATA
*
7295 TA-TAATATAATATAATAATATTAATAA
1 TATTTATA-AAT-TAATAA-ATTAAT-A
*
7322 TATTAATATAATTTAATAATATTA
1 TATT--TATAAATTAATAA-ATTA
7346 TAAATTATTA
Statistics
Matches: 83, Mismatches: 7, Indels: 24
0.73 0.06 0.21
Matches are distributed among these distances:
24 6 0.07
25 10 0.12
26 36 0.43
27 11 0.13
28 15 0.18
29 2 0.02
30 3 0.04
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.45
Consensus pattern (24 bp):
TATTTATAAATTAATAAATTAATA
Found at i:7247 original size:17 final size:16
Alignment explanation
Indices: 7227--7424 Score: 81
Period size: 17 Copynumber: 11.8 Consensus size: 16
7217 TATTTATAAG
7227 ATTAATGAAATTAATAT
1 ATTAAT-AAATTAATAT
*
7244 ATTAAATATATT-ATAAT
1 ATT-AATAAATTAAT-AT
* *
7261 ATTTAATATAATTTATAA
1 A-TTAATA-AATTAATAT
7279 ATTAACTAAATTAATAT
1 ATTAA-TAAATTAATAT
7296 A-TAATATAATATAATAAT
1 ATTAATA-AAT-TAAT-AT
7314 ATTAATAATATTAATAT
1 ATTAATAA-ATTAATAT
*
7331 AATTTAATAATATTATAAATT
1 -A-TTAATAA-ATTA-ATA-T
* *
7352 ATTAATATTATTATTAT
1 ATTAATA-AATTAATAT
*
7369 ATT-AT-AACT-ATAT
1 ATTAATAAATTAATAT
*
7382 A-TACATAAGTTAATAT
1 ATTA-ATAAATTAATAT
*
7398 A-TAAT-ATTTAATAT
1 ATTAATAAATTAATAT
*
7412 -TAAATTAAATTAA
1 ATTAA-TAAATTAA
7425 GTTATATATT
Statistics
Matches: 141, Mismatches: 17, Indels: 47
0.69 0.08 0.23
Matches are distributed among these distances:
12 1 0.01
13 4 0.03
14 14 0.10
15 7 0.05
16 22 0.16
17 36 0.26
18 22 0.16
19 31 0.22
20 3 0.02
21 1 0.01
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (16 bp):
ATTAATAAATTAATAT
Found at i:7267 original size:7 final size:8
Alignment explanation
Indices: 7251--7413 Score: 62
Period size: 9 Copynumber: 19.8 Consensus size: 8
7241 TATATTAAAT
7251 ATATTATA
1 ATATTATA
7259 ATATT-T-
1 ATATTATA
7265 A-A-TATA
1 ATATTATA
7271 AT-TTATA
1 ATATTATA
7278 A-ATTAACTA
1 ATATT-A-TA
7287 A-ATTAATA
1 ATATT-ATA
*
7295 TATAATATA
1 -ATATTATA
*
7304 ATATAATA
1 ATATTATA
7312 ATATTAATA
1 ATATT-ATA
7321 ATATTA-A
1 ATATTATA
7328 TATAATTTAATA
1 -AT-A-TT-ATA
7340 ATATTATA
1 ATATTATA
7348 A-ATTATTA
1 ATATTA-TA
7356 ATATTATTA
1 ATATTA-TA
7365 TTATATTATA
1 --ATATTATA
7375 ACTATATATA
1 A-TAT-TATA
*
7385 CATAAGT-TA
1 -AT-ATTATA
7394 ATA-TATA
1 ATATTATA
7401 ATATT-TA
1 ATATTATA
7408 ATATTA
1 ATATTA
7414 AATTAAATTA
Statistics
Matches: 124, Mismatches: 5, Indels: 52
0.69 0.03 0.29
Matches are distributed among these distances:
4 1 0.01
5 2 0.02
6 3 0.02
7 26 0.21
8 32 0.26
9 35 0.28
10 13 0.10
11 11 0.09
12 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.47
Consensus pattern (8 bp):
ATATTATA
Found at i:7321 original size:9 final size:9
Alignment explanation
Indices: 7188--7361 Score: 97
Period size: 9 Copynumber: 19.7 Consensus size: 9
7178 TATAATTATT
7188 ATATTAATA
1 ATATTAATA
7197 ATTAATTTAA-A
1 A-T-A-TTAATA
7208 ATATTAA-A
1 ATATTAATA
* *
7216 TTATTTATA
1 ATATTAATA
*
7225 AGATTAATGA
1 ATATTAAT-A
7235 A-ATTAAT-
1 ATATTAATA
7242 ATATTAA-A
1 ATATTAATA
7250 TATATT-ATA
1 -ATATTAATA
7259 ATATTTAAT-
1 ATA-TTAATA
*
7268 ATAATTTATA
1 AT-ATTAATA
7278 A-ATTAACTA
1 ATATTAA-TA
7287 A-ATTAAT-
1 ATATTAATA
*
7294 ATATAATATA
1 ATATTA-ATA
7304 ATA-TAATA
1 ATATTAATA
7312 ATATTAATA
1 ATATTAATA
7321 ATATTAAT-
1 ATATTAATA
7329 ATAATTTAATA
1 AT-A-TTAATA
7340 ATATT-ATA
1 ATATTAATA
*
7348 A-ATTATTA
1 ATATTAATA
7356 ATATTA
1 ATATTA
7362 TTATTATATT
Statistics
Matches: 132, Mismatches: 10, Indels: 46
0.70 0.05 0.24
Matches are distributed among these distances:
7 5 0.04
8 42 0.32
9 59 0.45
10 17 0.13
11 5 0.04
12 4 0.03
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (9 bp):
ATATTAATA
Found at i:7586 original size:22 final size:21
Alignment explanation
Indices: 7561--7644 Score: 52
Period size: 21 Copynumber: 4.0 Consensus size: 21
7551 CATAAAACAA
*
7561 ATAAATACATTTTATTATTTAT
1 ATAAATA-ATTATATTATTTAT
* *
7583 AT-AAT-GTTAAATTATTTA-
1 ATAAATAATTATATTATTTAT
*
7601 ATAAAATATATTATATTATTAAT
1 AT-AAATA-ATTATATTATTTAT
7624 -TAAATAAAATT-TATTATTTAT
1 ATAAAT--AATTATATTATTTAT
7645 TATTTACTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 15
0.69 0.10 0.21
Matches are distributed among these distances:
18 2 0.04
19 10 0.21
20 3 0.06
21 16 0.33
22 16 0.33
23 1 0.02
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (21 bp):
ATAAATAATTATATTATTTAT
Found at i:7685 original size:22 final size:23
Alignment explanation
Indices: 7658--7778 Score: 87
Period size: 22 Copynumber: 5.4 Consensus size: 23
7648 TTACTTATAA
7658 AATTA-AATATTAATGTAT-TTTT
1 AATTATAATATTAAT-TATATTTT
*
7680 AATTA-AATATTTAATTATATTAT
1 AATTATAATA-TTAATTATATTTT
*
7703 AATTATAA-A-TAATAAATATTTT
1 AATTATAATATTAAT-TATATTTT
* *
7725 AATTATAATATTAATAATAATATT
1 AATTATAATATTAATTAT-ATTTT
* *
7749 -ATTATTATATTAAATT-TA-TAT
1 AATTATAATATT-AATTATATTTT
7770 AATTATAAT
1 AATTATAAT
7779 TATTTATTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
21 5 0.06
22 34 0.42
23 29 0.36
24 13 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
AATTATAATATTAATTATATTTT
Found at i:7773 original size:45 final size:49
Alignment explanation
Indices: 7724--7814 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 49
7714 ATAAATATTT
7724 TAATTATAA-TA-TTA-ATAATAATAT-TAT-TATTATATTAAATTTATA
1 TAATTATAATTATTTATATAA-AATATATATATATTATATTAAATTTATA
*
7769 TAATTATAATTATTTATTTAAAATATATATGATATTATATTAAATT
1 TAATTATAATTATTTATATAAAATATATAT-ATATTATATTAAATT
7815 AATTTTATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
45 9 0.23
46 2 0.05
47 8 0.21
48 6 0.15
50 14 0.36
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (49 bp):
TAATTATAATTATTTATATAAAATATATATATATTATATTAAATTTATA
Found at i:7782 original size:28 final size:28
Alignment explanation
Indices: 7693--7838 Score: 72
Period size: 28 Copynumber: 5.1 Consensus size: 28
7683 TAAATATTTA
* *
7693 ATTATATTATAA-TTATA-AATAATAAAT
1 ATTATATTA-AATTTATATAATTATAATT
* *
7720 ATTTTAATTATAATATTA-ATAATAATATTATT
1 ATTAT-ATTA-AAT-TTATATAAT--TATAATT
7752 ATTATATTAAATTTATATAATTATAATT
1 ATTATATTAAATTTATATAATTATAATT
* * *
7780 ATT-TATTTAAA-ATATAT-ATGATATTAT
1 ATTATA-TTAAATTTATATAATTATAAT-T
* * *
7807 ATTAAATTAATTTTATAT-AGTATTAATT
1 ATTATATTAAATTTATATAATTA-TAATT
7835 ATTA
1 ATTA
7839 ACTAATATAA
Statistics
Matches: 92, Mismatches: 15, Indels: 23
0.71 0.12 0.18
Matches are distributed among these distances:
26 6 0.07
27 19 0.21
28 34 0.37
29 7 0.08
30 14 0.15
31 4 0.04
32 8 0.09
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (28 bp):
ATTATATTAAATTTATATAATTATAATT
Found at i:7794 original size:59 final size:57
Alignment explanation
Indices: 7685--7825 Score: 139
Period size: 59 Copynumber: 2.5 Consensus size: 57
7675 TTTTTAATTA
* *
7685 AATATT-TAATTATATTATAA-TTATA-AATAATAAATATTTTAATTATAATATTAATAAT
1 AATATTATTATTATATTA-AATTTATATAATAATAAATATTTTAATTAAAATA-T-AT-AT
* * *
7743 AATATTATTATTATATTAAATTTATATAATTATAATTA-TTTATTTAAAATATATAT
1 AATATTATTATTATATTAAATTTATATAATAATAAATATTTTAATTAAAATATATAT
* * *
7799 GATATTA-TATTAAATTAATTTTATATA
1 AATATTATTATTATATTAAATTTATATA
7826 GTATTAATTA
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
55 18 0.25
56 8 0.11
57 2 0.03
58 9 0.12
59 26 0.36
60 9 0.12
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (57 bp):
AATATTATTATTATATTAAATTTATATAATAATAAATATTTTAATTAAAATATATAT
Found at i:7852 original size:55 final size:57
Alignment explanation
Indices: 7730--7854 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 57
7720 ATTTTAATTA
* **
7730 TAATATTAATA-ATAATATTATTATTATATTAAATTTATATAATTATAATTATTTATT
1 TAATA-TAATATATAATATTATTATTAAATTAAATTTATATAATTATAATTATTTAAC
* * * *
7787 TAAAAT-ATATATGATATTA-TATTAAATTAATTTTATAT-AGTATTAATTA-TTAAC
1 TAATATAATATATAATATTATTATTAAATTAAATTTATATAATTA-TAATTATTTAAC
7841 TAATATAATATATA
1 TAATATAATATATA
7855 TTAATATTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
54 11 0.20
55 32 0.57
56 9 0.16
57 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (57 bp):
TAATATAATATATAATATTATTATTAAATTAAATTTATATAATTATAATTATTTAAC
Found at i:7865 original size:26 final size:25
Alignment explanation
Indices: 7730--7866 Score: 74
Period size: 26 Copynumber: 5.4 Consensus size: 25
7720 ATTTTAATTA
*
7730 TAATA-TTAATAATAATATTAT-TAT
1 TAATATTTAATAAT-ATAATATATAT
* *
7754 T-ATATTAAATTTATATAAT-TATAAT
1 TAATATTTAA-TAATATAATATAT-AT
*
7779 TATTTATTTAA-AATAT-ATATGATAT
1 TA-ATATTTAATAATATAATAT-ATAT
* * *
7804 T-ATATTAAATTAATTTTATATAGTAT
1 TAATATTTAA-TAATATAATATA-TAT
7830 TAAT-TATTAACTAATATAATATATAT
1 TAATAT-TTAA-TAATATAATATATAT
7856 TAATATTTAAT
1 TAATATTTAAT
7867 TTAATATCAA
Statistics
Matches: 85, Mismatches: 13, Indels: 29
0.67 0.10 0.23
Matches are distributed among these distances:
23 10 0.12
24 11 0.13
25 20 0.24
26 22 0.26
27 22 0.26
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (25 bp):
TAATATTTAATAATATAATATATAT
Found at i:7932 original size:22 final size:22
Alignment explanation
Indices: 7907--7949 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7897 ACTTATATTA
*
7907 TATTCAAA-TAATACTATAATAT
1 TATT-AAATTAATACAATAATAT
7929 TATTAAATTAATACAATAATA
1 TATTAAATTAATACAATAATA
7950 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTAAATTAATACAATAATAT
Found at i:8775 original size:22 final size:22
Alignment explanation
Indices: 8702--8780 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 22
8692 TTGAATAAGT
*
8702 TAAT-ATAATTATTA-ACATAACA
1 TAATAATAATTATTATATAT-A-A
8724 TAATAAATATATTATTATGAT-T-A
1 TAAT-AATA-ATTATTAT-ATATAA
*
8747 TATTAATAATTATTATATATAA
1 TAATAATAATTATTATATATAA
8769 TAATAATAATTA
1 TAATAATAATTA
8781 ACTAACATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
20 2 0.04
21 9 0.19
22 20 0.43
23 4 0.09
24 3 0.06
25 7 0.15
26 1 0.02
27 1 0.02
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (22 bp):
TAATAATAATTATTATATATAA
Found at i:8853 original size:31 final size:31
Alignment explanation
Indices: 8750--8853 Score: 79
Period size: 30 Copynumber: 3.3 Consensus size: 31
8740 ATGATTATAT
*
8750 TAATAATTATTATATATAATAATAATAA-TTA
1 TAATAA-TATTATATATATTAATAATAATTTA
* * *
8781 -ACTAACATGTAT-TATAATTAATAAACAATTTAAA
1 TAATAATAT-TATATAT-ATTAAT-AATAATTT--A
* *
8815 TATTAATATTATATATATTAATTATAATTTA
1 TAATAATATTATATATATTAATAATAATTTA
8846 TAATAATA
1 TAATAATA
8854 AATTATAAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
29 5 0.09
30 12 0.21
31 12 0.21
32 2 0.04
33 6 0.11
34 10 0.18
35 9 0.16
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (31 bp):
TAATAATATTATATATATTAATAATAATTTA
Found at i:9327 original size:17 final size:18
Alignment explanation
Indices: 9305--9338 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
9295 TATTTAATAA
9305 ATAATATAAT-AATAATT
1 ATAATATAATAAATAATT
9322 ATAATATAATAAATAAT
1 ATAATATAATAAATAAT
9339 GTAACATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATATAATAAATAATT
Found at i:9765 original size:24 final size:24
Alignment explanation
Indices: 9738--9783 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9728 ATAATAATTA
*
9738 TAAT-ATAATAATATTATTATTACT
1 TAATAATAA-AATATAATTATTACT
9762 TAATAATAAAATATAATTATTA
1 TAATAATAAAATATAATTATTA
9784 ATATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
TAATAATAAAATATAATTATTACT
Found at i:10636 original size:14 final size:13
Alignment explanation
Indices: 10613--10652 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
10603 TTATAAAAAT
*
10613 ATATTTATTATTA
1 ATATTTATTATAA
10626 ATATTTGATTATAA
1 ATATTT-ATTATAA
*
10640 ATATTTATAATAA
1 ATATTTATTATAA
10653 TTATGAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
ATATTTATTATAA
Found at i:10685 original size:23 final size:21
Alignment explanation
Indices: 10617--10686 Score: 52
Period size: 23 Copynumber: 3.0 Consensus size: 21
10607 AAAAATATAT
10617 TTATTATTAATATTTGATTATAAA
1 TTATTA-TAATATTT-A-TATAAA
*
10641 -TATTTATAATAATTATGAATAAA
1 TTA-TTATAATATTTAT--ATAAA
10664 TTATTAATAAATATTTATATAAA
1 TTATT-AT-AATATTTATATAAA
10687 CAAAAATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
21 1 0.03
22 1 0.03
23 21 0.55
24 7 0.18
25 8 0.21
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
TTATTATAATATTTATATAAA
Found at i:12217 original size:26 final size:26
Alignment explanation
Indices: 12188--12239 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12178 TAGATTTTAA
12188 ATAAT-TATATTAA-AATATAATTATTT
1 ATAATCTA-ATTAATAATA-AATTATTT
12214 ATAATCTAATTAATTAATAAATTATT
1 ATAATCTAATTAA-TAATAAATTATT
12240 AGATAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
26 10 0.43
27 9 0.39
28 4 0.17
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
ATAATCTAATTAATAATAAATTATTT
Found at i:12225 original size:15 final size:16
Alignment explanation
Indices: 12188--12230 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
12178 TAGATTTTAA
12188 ATAATTATATTAAAAT
1 ATAATTATATTAAAAT
*
12204 ATAATTAT-TTATAAT
1 ATAATTATATTAAAAT
*
12219 CTAATTA-ATTAA
1 ATAATTATATTAA
12231 TAAATTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATTATATTAAAAT
Found at i:12245 original size:12 final size:11
Alignment explanation
Indices: 12221--12272 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 11
12211 TTTATAATCT
12221 AATTAATTAATA
1 AATT-ATTAATA
12233 AATTATTAGATA
1 AATTATTA-ATA
*
12245 AATTATATAATT
1 AATTAT-TAATA
*
12257 AATTATATAATT
1 AATTAT-TAATA
12269 AATT
1 AATT
12273 GTATTAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
11 4 0.11
12 31 0.84
13 2 0.05
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (11 bp):
AATTATTAATA
Found at i:12268 original size:20 final size:19
Alignment explanation
Indices: 12224--12271 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
12214 ATAATCTAAT
12224 TAATTAATAAATTATTAGA
1 TAATTAATAAATTATTAGA
*
12243 TAAATT-ATATAATTAATTATA
1 T-AATTAATA-AATT-ATTAGA
12264 TAATTAAT
1 TAATTAAT
12272 TGTATTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 8 0.33
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
TAATTAATAAATTATTAGA
Found at i:12272 original size:24 final size:25
Alignment explanation
Indices: 12205--12282 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 25
12195 TATTAAAATA
12205 TAATT-ATT-TATAATCTAATTA-AT
1 TAATTAATTATATAAT-TAATTATAT
* *
12228 TAATAAATTAT-TAGATAAATTATA-
1 TAATTAATTATATA-ATTAATTATAT
*
12252 TAATTAATTATATAATTAATTGTAT
1 TAATTAATTATATAATTAATTATAT
12277 TAATTA
1 TAATTA
12283 GATTTGAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
23 4 0.09
24 28 0.64
25 12 0.27
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (25 bp):
TAATTAATTATATAATTAATTATAT
Found at i:12660 original size:35 final size:35
Alignment explanation
Indices: 12595--12662 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
12585 TATTAAAAAA
* * * *
12595 TTATATTAATTAATAATTTATAAGTTAATAATATT
1 TTATAATAAATAATAATTAATAAGTAAATAATATT
12630 TTATAATAAATAATAATATAATAA-TAAATAATA
1 TTATAATAAATAATAAT-TAATAAGTAAATAATA
12663 ACAATTAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 23 0.82
36 5 0.18
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (35 bp):
TTATAATAAATAATAATTAATAAGTAAATAATATT
Found at i:13319 original size:21 final size:21
Alignment explanation
Indices: 13293--13384 Score: 69
Period size: 21 Copynumber: 4.1 Consensus size: 21
13283 AATTTATAAT
13293 ATTATATTATTATATATTATA
1 ATTATATTATTATATATTATA
** *
13314 ATTATAAGATTATAAATTAATA
1 ATTATATTATTATATATT-ATA
* *
13336 ATTATATAATTAATAAATATAATAA
1 ATTATATTATT-AT--ATATTAT-A
*
13361 ATTAATATTATTTTATATTA-A
1 ATT-ATATTATTATATATTATA
13382 ATT
1 ATT
13385 GTAATTATAA
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
21 19 0.35
22 12 0.22
23 7 0.13
24 2 0.04
25 8 0.15
26 7 0.13
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
ATTATATTATTATATATTATA
Found at i:13325 original size:8 final size:7
Alignment explanation
Indices: 13286--13364 Score: 54
Period size: 8 Copynumber: 10.4 Consensus size: 7
13276 TTAAGTCAAT
13286 TTATAATA
1 TTATAA-A
*
13294 TTATATTA
1 TTATA-AA
*
13302 TTATATA
1 TTATAAA
13309 TTAT-AA
1 TTATAAA
13315 TTATAAGA
1 TTATAA-A
13323 TTATAAA
1 TTATAAA
13330 TTA-ATAA
1 TTATA-AA
13337 TTATATAA
1 TTATA-AA
13345 TTAATAAA
1 TT-ATAAA
13353 TATAATAAA
1 T-T-ATAAA
13362 TTA
1 TTA
13365 ATATTATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
6 6 0.10
7 17 0.27
8 28 0.45
9 11 0.18
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (7 bp):
TTATAAA
Found at i:13357 original size:37 final size:37
Alignment explanation
Indices: 13286--13357 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
13276 TTAAGTCAAT
* *
13286 TTATAATATTATATTATTATATATTATAATTATAAGA
1 TTATAATATTATATAATTATATATTATAAATATAAGA
13323 TTATAA-ATTA-ATAATTATATAATTAATAAATATAA
1 TTATAATATTATATAATTATAT-ATT-ATAAATATAA
13358 TAAATTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 9 0.29
36 7 0.23
37 15 0.48
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (37 bp):
TTATAATATTATATAATTATATATTATAAATATAAGA
Found at i:13364 original size:32 final size:29
Alignment explanation
Indices: 13310--13371 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 29
13300 TATTATATAT
13310 TATAATTATAAGATTATAAATTAATAATTA
1 TATAATTATAAGATTATAAATTAAT-ATTA
13340 TATAATTAATAA-ATATAATAAATTAATATTA
1 TATAATT-ATAAGAT-T-ATAAATTAATATTA
13371 T
1 T
13372 TTTATATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 9 0.31
31 10 0.34
32 10 0.34
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
TATAATTATAAGATTATAAATTAATATTA
Found at i:13366 original size:8 final size:8
Alignment explanation
Indices: 13313--13367 Score: 55
Period size: 8 Copynumber: 7.0 Consensus size: 8
13303 TATATATTAT
13313 AATT-ATA
1 AATTAATA
13320 AGATT-ATA
1 A-ATTAATA
13328 AATTAAT-
1 AATTAATA
13335 AATT-ATA
1 AATTAATA
13342 TAATTAATA
1 -AATTAATA
13351 AATATAATA
1 AAT-TAATA
13360 AATTAATA
1 AATTAATA
13368 TTATTTTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
6 2 0.05
7 8 0.19
8 21 0.50
9 11 0.26
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (8 bp):
AATTAATA
Found at i:14619 original size:5 final size:5
Alignment explanation
Indices: 14609--14634 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14599 TGTAATAATA
14609 ATTAT ATTAT ATTAT ATTAT ATTAT A
1 ATTAT ATTAT ATTAT ATTAT ATTAT A
14635 AATATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:16529 original size:182 final size:175
Alignment explanation
Indices: 16137--16564 Score: 509
Period size: 182 Copynumber: 2.4 Consensus size: 175
16127 TAAACATTAT
* * * * *
16137 ATAGACATGACTATTTGAAC-TGATTCGATAAACAAATTAACTTTTTAAATCACTT-AGTTATTA
1 ATAGTCATAACTATTTGAACTTGA-TCAATAAACAAATTAATTTTTTAAA-CTCTTGA-TTATTA
* *
16200 ATTTTTGGAATATTAATAAATTAGTTTTATTTTGAATAAGCTTGTATGAACTAAAACAATTGTTT
63 ATTTTTGAAATATTAAGAAATTAGTTTTATTTTGAATAAGCTTGTATGAACTAAAACAATTGTTT
* *
16265 TATGACAAAACAAAAGGTCATAACGATTTTAAATATATAATTGTTCAA
128 TATGACAAAACAAAAGGTCATAACGATTTTAAATAAATAATTATTCAA
* * * * *
16313 ATAGTCATTACTATTTAAATTTGTTCAGTAAACAAATTAATTTTCTTAAACTCTTGATTATTAAT
1 ATAGTCATAACTATTTGAACTTGATCAATAAACAAATTAATTTT-TTAAACTCTTGATTATTAAT
* * *
16378 TTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTCTGAACTAAAACAATTG
65 TTTTGAAATATTAAGAAATTAG-----TTTTATTTTGAATAAGCTTGTATGAACTAAAACAATTG
* * *
16443 TTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAATAAATAATTATTCAA
125 -TTTTATGACAAAACAAAAGGTCATAACGATTTTAAATAAATAATTATTCAA
* * * * *
16495 ATAGTCATAATTATTTGAACTTGATCAATAAACAAATTTATTTTTTCATATCTTTTGCTTATTAA
1 ATAGTCATAACTATTTGAACTTGATCAATAAACAAATTAATTTTTT-A-AACTCTTGATTATTAA
16560 TTTTT
64 TTTTT
16565 TGAATGTTAA
Statistics
Matches: 212, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
176 65 0.31
177 8 0.04
181 37 0.17
182 84 0.40
183 18 0.08
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (175 bp):
ATAGTCATAACTATTTGAACTTGATCAATAAACAAATTAATTTTTTAAACTCTTGATTATTAATT
TTTGAAATATTAAGAAATTAGTTTTATTTTGAATAAGCTTGTATGAACTAAAACAATTGTTTTAT
GACAAAACAAAAGGTCATAACGATTTTAAATAAATAATTATTCAA
Found at i:16614 original size:13 final size:15
Alignment explanation
Indices: 16581--16612 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
16571 TTAATAATTA
16581 TAAATTATAAATATT
1 TAAATTATAAATATT
16596 TAAATTA-AAATATT
1 TAAATTATAAATATT
16610 TAA
1 TAA
16613 TTTTTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATTATAAATATT
Found at i:17333 original size:18 final size:19
Alignment explanation
Indices: 17300--17335 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
17290 ACACATTGAT
*
17300 TTTTTAAATATCTTATTAA
1 TTTTTAAATATATTATTAA
17319 TTTTTAAA-ATATTATTA
1 TTTTTAAATATATTATTA
17336 GTTTAGCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTAAATATATTATTAA
Found at i:17869 original size:25 final size:24
Alignment explanation
Indices: 17840--17920 Score: 67
Period size: 24 Copynumber: 3.2 Consensus size: 24
17830 ATATTGTTTA
17840 AATTATTTATTTAAAAATTAAATT
1 AATTATTTATTTAAAAATTAAATT
* *
17864 ACATTA-TTAATTATGAAA-TAAATT
1 A-ATTATTTATTTA-AAAATTAAATT
* *
17888 AATATATTTATTATATAAATTATAATA
1 AAT-TATTTATT-TAAAAATTA-AATT
17915 AATTAT
1 AATTAT
17921 AATTAATTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
23 2 0.04
24 16 0.36
25 14 0.31
26 7 0.16
27 6 0.13
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (24 bp):
AATTATTTATTTAAAAATTAAATT
Found at i:17915 original size:31 final size:33
Alignment explanation
Indices: 17880--17961 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 33
17870 TTAATTATGA
*
17880 AATAAATTAATATATTTA-TTATA-TAAATTAT
1 AATAAATTAATATATTAATTTATATTAAATTAT
*
17911 AATAAATT-ATA-ATTAATTTATATTATATTAT
1 AATAAATTAATATATTAATTTATATTAAATTAT
*
17942 AAT-AATTAAAATATT-ATTTA
1 AATAAATTAATATATTAATTTA
17962 ATTTTATTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
29 4 0.09
30 12 0.27
31 25 0.57
32 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (33 bp):
AATAAATTAATATATTAATTTATATTAAATTAT
Found at i:17917 original size:10 final size:10
Alignment explanation
Indices: 17897--17946 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
17887 TAATATATTT
17897 ATTAT-ATAA
1 ATTATAATAA
17906 ATTATAATAA
1 ATTATAATAA
17916 ATTATAATTAA
1 ATTATAA-TAA
* * *
17927 TTTATATTAT
1 ATTATAATAA
17937 ATTATAATAA
1 ATTATAATAA
17947 TTAAAATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
9 5 0.15
10 20 0.61
11 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
ATTATAATAA
Found at i:17940 original size:21 final size:20
Alignment explanation
Indices: 17890--17948 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
17880 AATAAATTAA
*
17890 TATATT-TATTAT-ATAAAT
1 TATATTATATTATAATAATT
* *
17908 TATAATAAATTATAATTAATT
1 TATATTATATTATAA-TAATT
17929 TATATTATATTATAATAATT
1 TATATTATATTATAATAATT
17949 AAAATATTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
18 5 0.15
19 5 0.15
20 6 0.18
21 17 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATATTATATTATAATAATT
Found at i:18040 original size:17 final size:16
Alignment explanation
Indices: 18019--18064 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
18009 AATTATTTGC
18019 TAATTATTATAATTAA
1 TAATTATTATAATTAA
*
18035 TAAATTA-TATAAATAA
1 T-AATTATTATAATTAA
*
18051 TTATT-TTATAATTA
1 TAATTATTATAATTA
18065 TTTGTTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTATTATAATTAA
Found at i:18213 original size:25 final size:25
Alignment explanation
Indices: 18165--18214 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
18155 CTTATAACAA
*
18165 TTATATTAATAAAAATATTAATTAT
1 TTATATTAATAAAAATATAAATTAT
*
18190 TTATATT-ATAATAATATAATATTAT
1 TTATATTAATAAAAATATAA-ATTAT
18215 AATAGTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TTATATTAATAAAAATATAAATTAT
Found at i:18214 original size:21 final size:24
Alignment explanation
Indices: 18164--18215 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
18154 ACTTATAACA
18164 ATTATATTAATAAAAATATTAATT
1 ATTATATTAATAAAAATATTAATT
*
18188 ATTTATATT-ATAATAATA-TAA-T
1 A-TTATATTAATAAAAATATTAATT
18210 ATTATA
1 ATTATA
18216 ATAGTTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
23 3 0.12
24 9 0.35
25 7 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTATATTAATAAAAATATTAATT
Found at i:18294 original size:23 final size:20
Alignment explanation
Indices: 18255--18306 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
18245 ATTATAAAAT
*
18255 AATTATTATATTTATATGATA
1 AATTATTATATTAATAT-ATA
18276 AATTATATATTATTAATATATA
1 AATTAT-TA-TATTAATATATA
*
18298 AATAATTAT
1 AATTATTAT
18307 CAAATAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.04
21 8 0.30
22 10 0.37
23 8 0.30
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AATTATTATATTAATATATA
Found at i:19341 original size:434 final size:440
Alignment explanation
Indices: 18502--19355 Score: 1049
Period size: 434 Copynumber: 1.9 Consensus size: 440
18492 ACTTTTTCGA
* * * *
18502 TAAATAGATTTAGTTTTTTAAATCTCTTACTCACTAATTTTTTAAATGTTAATAAATTAGTATTA
1 TAAATAGAATTAGTTTTTTAAATCTCTTACTCACTAATTTATGAAATATTAATAAATTAGTATTA
* *
18567 TTTTATTTTGAATAAGCTTGTATGAACTAAAATAATTATTTTATGACTAAACAAAAGGTCAGAAT
66 TTTTATTTTGAATAAGCTAGTATGAACTAAAAAAATTATTTTATGACTAAACAAAA-G-C--AA-
* * *
18632 GATTTGAAATAGATAATTGTTTTAATAGTCTTAACTATTTGAACTAGTTTGATAAACACATTTAT
126 GATTTAAAATAGATAATTGTTATAATAGTCTTAACTATTTGAACTAGTTTGATAAACAAATTTAT
*
18697 TTTTTAAAATCTCTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTTAATCCGAAT
191 TTTTTAAAATCTCTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTTAATCCAAAT
* * * * *
18762 AAGCTTGTATGAAAAGAAACAACTATTTTGTGACAAAATAAAGATCATAATGTTTTAAGATAGAT
256 AAGCTTATATGAAAAGAAACAACTATTTTATGACAAAAAAAAGATCATAATGTTTGAAGATAGAC
* * * *
18827 AATTGTTCAAATAGTCATAACTATTTGAACTATTTCAAAAAATAGATTTAGTCTTTAAATCCCTT
321 AATTATTCAAATAGTCATAACTATTTAAACTATTTCAAAAAACAAATTTAGTCTTTAAATCCCTT
* *
18892 ATTAATTACTTTTTGAAATATTAATAAATTCATTTTATTAATATAACTTGTTAGG
386 ATTAATTAATTTTTGAAAGATTAATAAATTCATTTTATTAATATAACTTGTTAGG
* *
18947 TAAATAGAATTA-TTTTTTAAATCTCTTACAT-ATTAATTTATGAAATATTAATAAATTCA-TTT
1 TAAATAGAATTAGTTTTTTAAATCTCTTAC-TCACTAATTTATGAAATATTAATAAATT-AGTAT
* *
19009 TATTTTATTCTT-AATAAGCTAGTATGAATTAAAAAAATTATTTTATG-GTAAA-AAAA-C-A-A
64 TATTTTATT-TTGAATAAGCTAGTATGAACTAAAAAAATTATTTTATGACTAAACAAAAGCAAGA
* * *
19068 TTTAAAATAGATAATTGTTCAT-ATAGTCTTAACTATTTGAACTAGTTTGGTAGATAAATTTATT
128 TTTAAAATAGATAATTGTT-ATAATAGTCTTAACTATTTGAACTAGTTTGATAAACAAATTTATT
** * * * *
19132 TTTT-AAATCTCTTTGTTATTAATTTTTGGAATATTATTATATTAGTATTATTTTATTTCAAATA
192 TTTTAAAATCTCTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTTAATCCAAATA
* * * * *
19196 AGCTTATATGAACAA-AAATAATTGTTTTATGGCAAAACAAAATG-TTATAATGATTTGAAG-TA
257 AGCTTATATGAA-AAGAAACAACTATTTTATGACAAAA-AAAA-GATCATAATG-TTTGAAGATA
* ** *
19258 TACAATTATTCAAATAGTCATAACTATTTAAACTAATTT-AGTAAACAAATTTA-TTTTGTAAAT
318 GACAATTATTCAAATAGTCATAACTATTTAAACT-ATTTCAAAAAACAAATTTAGTCTT-TAAAT
*
19321 CTCTTA-TATATTAATTTTTGAAAGATTAATAAATT
381 CCCTTATTA-ATTAATTTTTGAAAGATTAATAAATT
19356 AGTATTATTT
Statistics
Matches: 354, Mismatches: 44, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
433 86 0.24
434 149 0.42
435 12 0.03
436 1 0.00
439 1 0.00
442 4 0.01
443 4 0.01
444 82 0.23
445 15 0.04
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (440 bp):
TAAATAGAATTAGTTTTTTAAATCTCTTACTCACTAATTTATGAAATATTAATAAATTAGTATTA
TTTTATTTTGAATAAGCTAGTATGAACTAAAAAAATTATTTTATGACTAAACAAAAGCAAGATTT
AAAATAGATAATTGTTATAATAGTCTTAACTATTTGAACTAGTTTGATAAACAAATTTATTTTTT
AAAATCTCTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTTAATCCAAATAAGCT
TATATGAAAAGAAACAACTATTTTATGACAAAAAAAAGATCATAATGTTTGAAGATAGACAATTA
TTCAAATAGTCATAACTATTTAAACTATTTCAAAAAACAAATTTAGTCTTTAAATCCCTTATTAA
TTAATTTTTGAAAGATTAATAAATTCATTTTATTAATATAACTTGTTAGG
Found at i:19417 original size:181 final size:180
Alignment explanation
Indices: 19067--20051 Score: 751
Period size: 181 Copynumber: 5.5 Consensus size: 180
19057 TAAAAAAACA
* * * * * * *
19067 ATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAGTTTGGTAGATAAATTTATT
1 ATTTGAAATAGACAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAACAAATTTA-T
* * * *
19132 TTTTAAATCTCTTTGTTATTAATTTTTGGAATATTATTATATTAGTATTATTTTATTTCAAATAA
65 TTTTAAATCTC-TTATTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * * *
19197 GCTTATATGAACAAAAATAATTGTTTTATGGCAAAACAAAATG-TTATAATG
129 ACTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAATGATCATAATG
* * * * *
19248 ATTTGAAGTATACAATTATTCAAATAGTCATAACTATTTAAACTAATTTAGTAAACAAATTTATT
1 ATTTGAAATAGACAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAACAAATTTATT
*
19313 TTGTAAATCTCTTATATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTCAAATAA
66 TT-TAAATCTCTTAT-TATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* *
19378 ACTTGTAT-AATCAAAAACAATT-TTTATATGACCAAACAAAATG-TAATAATG
129 ACTTGTATGAA-CAAAAACAATTGTTT-TATGACAAAACAAAATGATCATAATG
* * * * * * * * *
19429 ATTTGAAATAGATAATTGTTGAAATGGCCATAATTATTTGAACT-GATATGGTAAACAGATTCAC
1 ATTTGAAATAGACAATTGTTCAAATAGTCATAACTATTTGAACTAG-TTTAGTAAACAAATTTA-
* * * **
19493 TTTTTAAATCATGTAATTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTTATTTTGAAT
64 TTTTTAAATC-TCTTATTATTAATTTTTGAAATATTAATAAATTAGTATTA-TTTTATTTCAAAT
* * * * * *
19558 AAATTTGTATGAACTAAAACCATTGTTTTGTGA-AAAACAAAA-GATCAGAACG
127 AAACTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAATGATCATAATG
** * * * *
19610 ATTTTCAATAGACAATTGTTCAAATAGTCATAACTATTTGAATTTGTTCAAT-AA-AAATATT-T
1 ATTTGAAATAGACAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAACAAAT-TTAT
* * ***
19672 TTTTAAA-CTCTTGTTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGGATAA
65 TTTTAAATCTCTT-ATTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * * ** * * *
19736 ATTTTTATGAACTAAAGCAATTACTTTATGTCAAAACAAAAGGCTCATAATG
129 ACTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAATGATCATAATG
* ** * * * * * *
19788 ATTTTAAATATG-TGATTGTTCAAATAGTCATAACTATTTAAATTTGTTCAATAAACGAATTTAT
1 ATTTGAAATA-GACAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAACAAATTTA-
* * * *
19852 TTTTTCAAATCTTTTGCTTATTAATTTTTTG-AATGTTAATAAATTTAG-ATTATTTTATTCCAA
64 TTTTT-AAATCTCTT-ATTATTAA-TTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCAA
* * * * * * * * * * ***
19915 ACAAGCATGTAAGATA-TAAAACAAATATTTAATGACTAAACATAA-GATTGGAATG
125 ATAAACTTGTATGA-ACAAAAACAATTGTTTTATGACAAAACAAAATGATCATAATG
* * * * * ** * * * * * *
19970 ATTTAAAATAGATAATTATCCTAATAGTTTTAACTATTTGAATTGGTTCAGCAAAAAAATTTCTT
1 ATTTGAAATAGACAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAACAAATTT-AT
20035 TTTTAAATCTCTTATTA
65 TTTTAAATCTCTTATTA
20052 AATTAGTATT
Statistics
Matches: 649, Mismatches: 127, Indels: 57
0.78 0.15 0.07
Matches are distributed among these distances:
176 40 0.06
177 43 0.07
178 61 0.09
179 8 0.01
180 22 0.03
181 293 0.45
182 103 0.16
183 68 0.10
184 11 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (180 bp):
ATTTGAAATAGACAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAACAAATTTATT
TTTAAATCTCTTATTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAAC
TTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAATGATCATAATG
Found at i:20271 original size:182 final size:179
Alignment explanation
Indices: 20051--20480 Score: 426
Period size: 180 Copynumber: 2.4 Consensus size: 179
20041 ATCTCTTATT
* * *
20051 AAATTAGTATTATTTT-TAATTGAATAAGCTTCTATGATAAGAAATAATTGTTTTATGACAAAAC
1 AAATTAGTATTATTTTAT-TTTGAATAAGCTTGTATGATAAAAAATAATTGTTTTATGACAAAAC
* * * ** * *
20115 AAAA-ATCTTAATGATTAGAGATTGATAATTGTTCAAATAGTC-ATAACTT-TTTGAACTGGTTC
65 AAAATATCATAATGATTAGAAATAGATAATCATTCAAAT-GGCAATAA-TTATTTGAACTGATTC
*
20177 -GATAAACATATTTATTTTTTTTAAATCTCTTACTCATTAACTTTT-GAAATATTAAA
128 AG-TAAACA-A-TT-TTATTTTTAAATCTCTTACTCATT-A-TTTTAGAAATATTAAA
* * * **
20233 AAATTAGTAATATTTTATTTTGAATAAGCTTGTATGATAAAAAACAAATACTTTATGACAAAACA
1 AAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATAAAAAATAATTGTTTTATGACAAAACA
* * * *
20298 AAATGTCATAATGATTTGAAATAGATAATCATTCAAATGGCAATAATTATTTTAATTGATTCAGT
66 AAATATCATAATGATTAGAAATAGATAATCATTCAAATGGCAATAATTATTTGAACTGATTCAGT
* * *
20363 AAACAATTTTATTTTTAAATTTCTTACTTATTATTTTAGGAAATATTAAT
131 AAACAATTTTATTTTTAAATCTCTTACTCATTATTTTA-GAAATATTAAA
***** * *
20413 AAATTAGTATTATTTTATTCCCTCTAAGCTTGTAT--TAACTTAAATAATTGTTTTATGACAAAT
1 AAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATAA--AAAATAATTGTTTTATGACAAAA
20476 CAAAA
64 CAAAA
20481 GGTTATAATG
Statistics
Matches: 204, Mismatches: 35, Indels: 20
0.79 0.14 0.08
Matches are distributed among these distances:
178 7 0.03
179 1 0.00
180 82 0.40
181 2 0.01
182 63 0.31
183 48 0.24
184 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (179 bp):
AAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATAAAAAATAATTGTTTTATGACAAAACA
AAATATCATAATGATTAGAAATAGATAATCATTCAAATGGCAATAATTATTTGAACTGATTCAGT
AAACAATTTTATTTTTAAATCTCTTACTCATTATTTTAGAAATATTAAA
Found at i:20429 original size:180 final size:182
Alignment explanation
Indices: 20050--20431 Score: 431
Period size: 182 Copynumber: 2.1 Consensus size: 182
20040 AATCTCTTAT
* * * * **
20050 TAAATTAGTATTATTTT-TAATTGAATAAGCTTCTATGATAAGAAATAATTGTTTTATGACAAAA
1 TAAATTAGTATTATTTTAT-TTTGAATAAGCTTCTATGATAAAAAACAAATACTTTATGACAAAA
* * * ** * *
20114 CAAAAATCTTAATGATTAGAGATTGATAATTGTTCAAATAGTCATAACTTTTTGAACTGGTTCGA
65 CAAAAATCATAATGATTAGAAATAGATAATCATTCAAATAGGCATAACTTTTTGAACTGATTCGA
*
20179 TAAACATATTTATTTTTTTTAAATCTCTTACTCATTAACTTTTGAAATATTAA
130 TAAACATATTTATTATTTTTAAATCTCTTACTCATTAACTTTTGAAATATTAA
* * *
20232 AAAATTAGTAATATTTTATTTTGAATAAGCTTGTATGATAAAAAACAAATACTTTATGACAAAAC
1 TAAATTAGTATTATTTTATTTTGAATAAGCTTCTATGATAAAAAACAAATACTTTATGACAAAAC
* * * *
20297 AAAATGTCATAATGATTTGAAATAGATAATCATTCAAAT-GGCAATAA-TTATTTTAATTGATTC
66 AAAA-ATCATAATGATTAGAAATAGATAATCATTCAAATAGGC-ATAACTT-TTTGAACTGATTC
* *
20360 -AGTAAACA-A-TT-TTATTTTTAAATTTCTTACTTATT-A-TTTTAGGAAATATTAA
128 GA-TAAACATATTTATTATTTTTAAATCTCTTACTCATTAACTTTT--GAAATATTAA
20412 TAAATTAGTATTATTTTATT
1 TAAATTAGTATTATTTTATT
20432 CCCTCTAAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
178 4 0.02
179 1 0.01
180 49 0.29
181 2 0.01
182 64 0.38
183 48 0.29
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.43
Consensus pattern (182 bp):
TAAATTAGTATTATTTTATTTTGAATAAGCTTCTATGATAAAAAACAAATACTTTATGACAAAAC
AAAAATCATAATGATTAGAAATAGATAATCATTCAAATAGGCATAACTTTTTGAACTGATTCGAT
AAACATATTTATTATTTTTAAATCTCTTACTCATTAACTTTTGAAATATTAA
Found at i:20882 original size:180 final size:180
Alignment explanation
Indices: 20582--20937 Score: 421
Period size: 180 Copynumber: 2.0 Consensus size: 180
20572 AATTTATACT
* * * *
20582 GAATAAGCTTGTATGAACTAGAACAATTATTTTATAACTAAACAAAAGGTCAGAACGATTTTAAA
1 GAATAAGCTTGTATGAACTAAAACAATTATTTTACAACAAAACAAAAGGTCAGAACGATTTAAAA
** * * **
20647 TAGATAATTGTTTTAATAGTCTTAACCATTTGAACTGATTTGTAAACAAATTTATTTTTTAAATT
66 TAGATAATCATTTTAATAGTCGTAACCATTTGAACTGAGTTCAAAACAAATTTATTTTTTAAATT
* * *
20712 TCTTACTTATTAATTTTTAAAATATTATTAAATTAGTATGATTTTAATCA
131 TCTTACTTATTAAGTTTCAAAATATTATTAAATTAATATGATTTTAATCA
* * * * *
20762 GAATAAGCTTGTATGAAC-AAAACAATTGTTTTACGACAAAAGAAAATGTCATAACGATTTAAAA
1 GAATAAGCTTGTATGAACTAAAACAATTATTTTACAACAAAACAAAAGGTCAGAACGATTTAAAA
* * * * *
20826 TAGATAATCA-TTTATATTGTCGTAACGATTTTAACT-AGTTCAACAATTAGATTTATTTTTTAA
66 TAGATAATCATTTTA-ATAGTCGTAACCATTTGAACTGAGTTCAA-AA-CAAATTTATTTTTTAA
* ** *
20889 TTTTCTTGGTTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTA
128 ATTTCTTACTTATTAAGTTTCAAAATATTATTAAATTAATATGATTTTA
20938 TTCTAAATAA
Statistics
Matches: 146, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
178 8 0.05
179 64 0.44
180 74 0.51
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
GAATAAGCTTGTATGAACTAAAACAATTATTTTACAACAAAACAAAAGGTCAGAACGATTTAAAA
TAGATAATCATTTTAATAGTCGTAACCATTTGAACTGAGTTCAAAACAAATTTATTTTTTAAATT
TCTTACTTATTAAGTTTCAAAATATTATTAAATTAATATGATTTTAATCA
Found at i:21692 original size:26 final size:26
Alignment explanation
Indices: 21625--21688 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
21615 TATTTTATAG
*
21625 TATTAATATAAAAATTATAAATATTAT
1 TATTAATAT-AATATTATAAATATTAT
*
21652 TATTAATATCATATTATAAATA-TAT
1 TATTAATATAATATTATAAATATTAT
21677 TATATAAT-TAAT
1 TAT-TAATATAAT
21689 TATTTGTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 9 0.27
26 15 0.45
27 9 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
TATTAATATAATATTATAAATATTAT
Found at i:21735 original size:36 final size:36
Alignment explanation
Indices: 21665--21735 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
21655 TAATATCATA
* *
21665 TTATAAATATATTATATAATTAATTATTTGTAATAT
1 TTATAAATATATTATATAATTAACTATATGTAATAT
*
21701 TTATAAATATA-TA-ATGATTTAACTATATGTTAATA
1 TTATAAATATATTATAT-AATTAACTATATG-TAATA
21736 AATACAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
34 2 0.07
35 12 0.40
36 16 0.53
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (36 bp):
TTATAAATATATTATATAATTAACTATATGTAATAT
Found at i:22289 original size:34 final size:33
Alignment explanation
Indices: 22201--22291 Score: 87
Period size: 34 Copynumber: 2.7 Consensus size: 33
22191 TAATTATATA
* *
22201 AATTATAAAATATATACAATTATAG-TAATAAAATT
1 AATTATATAAT-TATA-AATTATTGCT-ATAAAATT
*
22236 AATTATATAATTTTAAATTATTGCTATAAATATT
1 AATTATATAATTATAAATTATTGCTATAAA-ATT
*
22270 AATTTTA-AATTATATAATTATT
1 AATTATATAATTATA-AATTATT
22292 TATCATTAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
33 18 0.38
34 20 0.42
35 10 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (33 bp):
AATTATATAATTATAAATTATTGCTATAAAATT
Found at i:22968 original size:179 final size:176
Alignment explanation
Indices: 22467--22977 Score: 438
Period size: 180 Copynumber: 2.9 Consensus size: 176
22457 GAGCTTAAAT
* * * * * * * *
22467 AATTGTTTTATGACAAAACAAAAGGTTATAACAAGTTGAAATAAATAATTTTTCATATAGTCC-T
1 AATTGTTTTATGACAGAA-AAAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATA-ACCAT
* * ** * * *
22531 AACTATTTGAACTGGTTTGACAAATGGATTTATTTTTTAAATCTCATAGTT-ATTCATTTTCAAA
64 AACTATTTGAACTAGATCAACAAATAGATTTATTTTTTAAATCTCTTA-TTAATTC---TT-GAA
* * * * * * * * * * *** *
22595 ATATTAGTAAATTATTATTACTTTATTTCGAATAAGCTTGTATGAACAGAAAC
124 ATAATAATAAAGTAGTATTATTTTATTTAGAAAAATCTTATTTGTTGAAAAAC
* ** * * *
22648 AATTGTTTTATGATAGAGCAAAGGTTATAACAATTTGAAATAGATAATTGTTCAAATAATCATAA
1 AATTGTTTTATGACAGAAAAAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATAACCATAA
* *
22713 CTATTTGAACTAGATCAACAAATAGATTTCTTTTTTAAATCTCTTATTAATTCTTGAAATATTAA
66 CTATTTGAACTAGATCAACAAATAGATTTATTTTTTAAATCTCTTATTAATTCTTGAAATAATAA
*
22778 TAAATTAGTATTATTTTATTTAGAAAAATCTTATTTGTTGAAAAAC
131 TAAAGTAGTATTATTTTATTTAGAAAAATCTTATTTGTTGAAAAAC
** * * *
22824 AATTGTTTTATGACA-AAAAAAGGTAATAATGATTTAAAATAGATAGTTGTTTAAATAGCCATAA
1 AATTGTTTTATGACAGAAAAAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATAACCATAA
* * ** *
22888 TTATTTGAA-TTGATTCAGTAAACTA-ATTTATTTTTTAAATCTCTTGTTTATTAATTTTTGAAA
66 CTATTTGAACTAGA-TCAACAAA-TAGATTTATTTTTTAAATCTC----TTATTAATTCTTGAAA
22951 TAATAATAAAGTAGTATTATTTTATTT
125 TAATAATAAAGTAGTATTATTTTATTT
22978 TGGATAAGTT
Statistics
Matches: 273, Mismatches: 49, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
174 3 0.01
175 70 0.26
176 59 0.22
177 2 0.01
179 43 0.16
180 81 0.30
181 15 0.05
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (176 bp):
AATTGTTTTATGACAGAAAAAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATAACCATAA
CTATTTGAACTAGATCAACAAATAGATTTATTTTTTAAATCTCTTATTAATTCTTGAAATAATAA
TAAAGTAGTATTATTTTATTTAGAAAAATCTTATTTGTTGAAAAAC
Found at i:23088 original size:26 final size:25
Alignment explanation
Indices: 23044--23116 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 25
23034 TTAATATGAT
*
23044 ATAATAATAAAATATTTATTATTAAA
1 ATAATAATAAAATAATTATT-TTAAA
*
23070 ATAAT-ATAAAGATAATTATTTTATA
1 ATAATAATAAA-ATAATTATTTTAAA
* **
23095 ATATATTATATTATAATTATTT
1 ATA-ATAATAAAATAATTATTT
23117 GTTCTATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 12 0.30
26 25 0.62
27 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (25 bp):
ATAATAATAAAATAATTATTTTAAA
Found at i:23093 original size:31 final size:32
Alignment explanation
Indices: 23022--23093 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
23012 TAATTGTAAT
* *
23022 TTATATTTATTATTAATATGATATAATAATAA
1 TTATATTTATTATTAAAATAATATAATAATAA
*
23054 -AATATTTATTATTAAAATAATATAA-AGATAA
1 TTATATTTATTATTAAAATAATATAATA-ATAA
23085 TTAT-TTTAT
1 TTATATTTAT
23094 AATATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
30 1 0.03
31 31 0.91
32 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (32 bp):
TTATATTTATTATTAAAATAATATAATAATAA
Found at i:23301 original size:32 final size:30
Alignment explanation
Indices: 23234--23301 Score: 73
Period size: 32 Copynumber: 2.2 Consensus size: 30
23224 TTATATTAAA
* * * *
23234 ATATTTAATTTATATTTATTAAATTATATT
1 ATATATAATTTATATTTATAAAAATAAATT
*
23264 TTATATAATATTATTATTTATAAAAATAAATT
1 ATATATAAT-TTA-TATTTATAAAAATAAATT
23296 ATATAT
1 ATATAT
23302 TAAATAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
30 7 0.23
31 3 0.10
32 20 0.67
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
ATATATAATTTATATTTATAAAAATAAATT
Found at i:23308 original size:16 final size:16
Alignment explanation
Indices: 23282--23365 Score: 54
Period size: 16 Copynumber: 5.5 Consensus size: 16
23272 TATTATTATT
23282 TATAA-AAATAA-ATTA
1 TATAATAAATAATA-TA
*
23297 TATATTAAATAATATA
1 TATAATAAATAATATA
*
23313 TATAATAAACTATTATA
1 TATAATAAA-TAATATA
* *
23330 -ATAGT-AATAATTTA
1 TATAATAAATAATATA
**
23344 TA-AATAGTTAATA-A
1 TATAATAAATAATATA
23358 TATAATAA
1 TATAATAA
23366 TATTATTAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
14 10 0.19
15 15 0.29
16 20 0.38
17 7 0.13
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.39
Consensus pattern (16 bp):
TATAATAAATAATATA
Found at i:23393 original size:23 final size:24
Alignment explanation
Indices: 23362--23419 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
23352 TAATAATATA
23362 ATAATATTATTAA-TATAGT-ATT
1 ATAATATTATTAATTATAGTAATT
*
23384 ATTAATATTA-TAATTATATTAATT
1 A-TAATATTATTAATTATAGTAATT
23408 ATAATATT-TTAA
1 ATAATATTATTAA
23420 AATTTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 4 0.13
23 23 0.74
24 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
ATAATATTATTAATTATAGTAATT
Found at i:23405 original size:17 final size:16
Alignment explanation
Indices: 23197--23419 Score: 76
Period size: 17 Copynumber: 14.1 Consensus size: 16
23187 GAACTATTTA
*
23197 AATATTATAGTA-ATT
1 AATATTATAATATATT
*
23212 -A-ATTAAAAT-TATT
1 AATATTATAATATATT
* *
23225 TATATTAAAATAT-TT
1 AATATTATAATATATT
*
23240 AAT-TTAT-ATTTATT
1 AATATTATAATATATT
* *
23254 AA-ATTATATTTTATAT
1 AATATTATAATATAT-T
* * *
23270 AATATTATTATTTATA
1 AATATTATAATATATT
* * *
23286 AAAATAAATTATATATT
1 AATAT-TATAATATATT
* *
23303 AA-ATAATATATATAATA
1 AATATTATA-ATAT-ATT
*
23320 AACTATTATAATAGTAAT
1 AA-TATTATAATA-TATT
23338 AAT-TTATAA-ATAGTT
1 AATATTATAATATA-TT
*
23353 AATAATATAATAATATT
1 AATATTATAAT-ATATT
* * *
23370 ATTAATATAGTATTATT
1 AATATTATAATA-TATT
23387 AATATTATAATTATATT
1 AATATTATAA-TATATT
*
23404 -A-ATTATAATATTTT
1 AATATTATAATATATT
23418 AA
1 AA
23420 AATTTGTTTG
Statistics
Matches: 160, Mismatches: 26, Indels: 44
0.70 0.11 0.19
Matches are distributed among these distances:
13 12 0.08
14 20 0.12
15 33 0.21
16 27 0.17
17 51 0.32
18 11 0.07
19 6 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
AATATTATAATATATT
Found at i:23522 original size:18 final size:18
Alignment explanation
Indices: 23505--23538 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23495 AGTATTATAT
23505 TTAATTA-ATATATAATA
1 TTAATTATATATATAATA
*
23522 TTAATTATTTATATAAT
1 TTAATTATATATATAAT
23539 TAATAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAATTATATATATAATA
Found at i:23538 original size:25 final size:25
Alignment explanation
Indices: 23502--23549 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
23492 TATAGTATTA
23502 TATTTAATTAA-TATATAATATTAAT
1 TATTTAATTAATTA-ATAATATTAAT
23527 TATTT-ATATAATTAATAATATTA
1 TATTTAAT-TAATTAATAATATTA
23550 CTAAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 2 0.10
25 17 0.81
26 2 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTTAATTAATTAATAATATTAAT
Found at i:23590 original size:29 final size:27
Alignment explanation
Indices: 23549--23604 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
23539 TAATAATATT
23549 ACTAAATATTATAGTTACATATAAGAATA
1 ACTAAATATTATA-TTA-ATATAAGAATA
*
23578 ACTAAAT-TATATATTAATATAATAATA
1 ACTAAATAT-TATATTAATATAAGAATA
23605 TTAATTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 10 0.40
28 4 0.16
29 11 0.44
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.38
Consensus pattern (27 bp):
ACTAAATATTATATTAATATAAGAATA
Found at i:23611 original size:25 final size:26
Alignment explanation
Indices: 23508--23625 Score: 77
Period size: 25 Copynumber: 4.5 Consensus size: 26
23498 ATTATATTTA
*
23508 ATTAATAT-ATAATA-TTAATTATTT
1 ATTAATATAATAATACTTAATTATAT
* *
23532 ATATAAT-TAATAATATTACTAAATATTAT
1 AT-TAATATAATAATACT--TAATTA-TAT
* *
23561 AGTTACATATAAGAATAACTAAATTATAT
1 A-TTA-ATATAATAAT-ACTTAATTATAT
23590 ATTAATATAATAATA-TTAATTAT-T
1 ATTAATATAATAATACTTAATTATAT
*
23614 AGTAAT-TAATAA
1 ATTAATATAATAA
23626 AAAATGAATC
Statistics
Matches: 75, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
23 6 0.08
24 9 0.12
25 17 0.23
26 2 0.03
27 9 0.12
28 8 0.11
29 9 0.12
30 7 0.09
31 6 0.08
32 2 0.03
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (26 bp):
ATTAATATAATAATACTTAATTATAT
Found at i:23936 original size:179 final size:180
Alignment explanation
Indices: 23623--24031 Score: 475
Period size: 180 Copynumber: 2.3 Consensus size: 180
23613 TAGTAATTAA
* * * * * * *
23623 TAAAAAATGAATCTGTTTACTAAATAAGTTTAAATAATTATAATTATTTGAACAATTATTTATTG
1 TAAAAAATAAATCTGTTTACTGAACAAGTTAAAAT-ATTATGACTATTTCAACAATTATTTATTG
* ** *
23688 GAAATCGCTATAACCTTTTGATTTGTCATAAAATGATTTTTTCTATTCATACAAGCTTATTTTGA
65 GAAATCGCTATAACCTTTTGATTTATCATAAAACAATTTTTTCTATTCATACAAGCTTATTTCGA
23753 ATAAAATAATATAAATTTATTAA-ATTAAGACAATTAATAAGTAAAAGATT
130 ATAAAATAATATAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATT
* *
23803 T-TAAAATAAATCTGTTTACTGAACAAGTTCAAATCATTATGACTATTTCAACAATTATTTTATT
1 TAAAAAATAAATCTGTTTACTGAACAAGTTAAAAT-ATTATGACTATTTCAACAATTA-TTTATT
** * * * * * * *
23867 TTAAATTGTTATGACTTTTTGTTTTATCATAAAACAATTATTTT-TGTTCATACTAGCTTA-TTC
64 GGAAATCGCTATAACCTTTTGATTTATCATAAAACAATT-TTTTCTATTCATACAAGCTTATTTC
* ** *
23930 GAATAAAATAATATTAATTTATTAATATTTCGACAATTTATAAGTAAAAGATT
128 GAATAAAATAATATAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATT
* * * *
23983 TAAAAAATAAATATGTTTGCCGAACAAGTTAAAATAGTCATGACTATTT
1 TAAAAAATAAATCTGTTTACTGAACAAGTTAAAATA-TTATGACTATTT
24032 GAATAATAAT
Statistics
Matches: 192, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
179 73 0.38
180 76 0.40
181 43 0.22
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (180 bp):
TAAAAAATAAATCTGTTTACTGAACAAGTTAAAATATTATGACTATTTCAACAATTATTTATTGG
AAATCGCTATAACCTTTTGATTTATCATAAAACAATTTTTTCTATTCATACAAGCTTATTTCGAA
TAAAATAATATAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATT
Found at i:24069 original size:180 final size:179
Alignment explanation
Indices: 23702--24085 Score: 443
Period size: 180 Copynumber: 2.1 Consensus size: 179
23692 TCGCTATAAC
* * *
23702 CTTTTGATTTGTCATAAAATGATTTTTTCTATTCATACAAGCTTATTTTGAATAAAATAATATAA
1 CTTTTGTTTTGTCATAAAATAATTTTTTCTATTCATACAAGCTTATTTCGAATAAAATAATATAA
* * *
23767 ATTTATTAAATTAAGACAATTAATAAGTAAAAGATTTTAAAATAAATCTGTTTACTGAACAAGTT
66 ATTTATTAAATTAAGACAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACCGAACAAGTT
* * * * * ** *
23832 CAAATCATTATGACTATTTCAACAATTATTTTATTTTAAATTGTTATGA
131 AAAATCATCATGACTATTTCAACAATTAATCTATTTCAAATCATCATGA
* * * *
23881 CTTTTTGTTTTATCATAAAACAATTATTTT-TGTTCATACTAGCTTA-TTCGAATAAAATAATAT
1 C-TTTTGTTTTGTCATAAAATAATT-TTTTCTATTCATACAAGCTTATTTCGAATAAAATAATAT
* ** * *
23944 TAATTTATTAATATTTCGACAATTTATAAGTAAAAGATTTAAAAAATAAATATGTTTGCCGAACA
64 AAATTTATTAA-ATTAAGACAATTAATAAGTAAAAGATTT-AAAAATAAATATGTTTACCGAACA
* * *
24009 AGTTAAAAT-AGTCATGACTATTTGAATAA-TAATCTATTTCAAATCATCGTGA
127 AGTTAAAATCA-TCATGACTATTTCAACAATTAATCTATTTCAAATCATCATGA
*
24061 GCTTTTGTTTTGTAATAAAATAATT
1 -CTTTTGTTTTGTCATAAAATAATT
24086 GCTAGTATTA
Statistics
Matches: 170, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
179 27 0.16
180 95 0.56
181 48 0.28
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (179 bp):
CTTTTGTTTTGTCATAAAATAATTTTTTCTATTCATACAAGCTTATTTCGAATAAAATAATATAA
ATTTATTAAATTAAGACAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACCGAACAAGTT
AAAATCATCATGACTATTTCAACAATTAATCTATTTCAAATCATCATGA
Found at i:24619 original size:21 final size:21
Alignment explanation
Indices: 24580--24619 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24570 ACATTGTTAA
*
24580 TTATAATTTATAATATAATAT
1 TTATAATATATAATATAATAT
24601 TTATAATATATTAAT-TAAT
1 TTATAATATA-TAATATAAT
24620 TTAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATATATAATATAATAT
Found at i:24628 original size:13 final size:13
Alignment explanation
Indices: 24610--24635 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24600 TTTATAATAT
24610 ATTAATTAATTTA
1 ATTAATTAATTTA
24623 ATTAATTAATTTA
1 ATTAATTAATTTA
24636 TGAAAACAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTAATTAATTTA
Found at i:24728 original size:17 final size:18
Alignment explanation
Indices: 24703--24744 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
24693 TAATATTATT
*
24703 TATTATTATTT-ATTATAA
1 TATT-TTATTTCATAATAA
24721 TATTTTATTTCATAATAA
1 TATTTTATTTCATAATAA
24739 -ATTTTA
1 TATTTTA
24745 ATAGTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTATTTCATAATAA
Found at i:24832 original size:19 final size:20
Alignment explanation
Indices: 24799--24838 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
24789 TGATTACTAT
*
24799 TAATAAATTATTATTAATTA
1 TAATAAATTAATATTAATTA
*
24819 TAAT-AATTAATATTTATTA
1 TAATAAATTAATATTAATTA
24838 T
1 T
24839 TATATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATAAATTAATATTAATTA
Found at i:24835 original size:23 final size:23
Alignment explanation
Indices: 24809--25005 Score: 76
Period size: 23 Copynumber: 8.5 Consensus size: 23
24799 TAATAAATTA
24809 TTATTAATTATAATAATTAATAT
1 TTATTAATTATAATAATTAATAT
* *
24832 TTATT-ATTATATTAAAATAATAT
1 TTATTAATTATAAT-AATTAATAT
* * *
24855 ACTTAATT-ATTAAAATAAATTATTGT
1 --TT-ATTAATTATAAT-AATTAATAT
*
24881 ATTATTAA-TACAATAATTATTATAT
1 -TTATTAATTATAATAATTA--ATAT
* *
24906 TT-TT-ACTA-AATATTTGAAT-T
1 TTATTAATTATAATAATT-AATAT
24926 ATTATTAATTATATATAATT-ATAT
1 -TTATTAATTATA-ATAATTAATAT
* *
24950 ATATTAAATAT-AT-A-TAA-AT
1 TTATTAATTATAATAATTAATAT
* *
24969 TTATAAATTATAATAATTTATTAT
1 TTATTAATTATAATAA-TTAATAT
24993 TTATAATAATTAT
1 TTAT--TAATTAT
25006 TAAAATATTT
Statistics
Matches: 130, Mismatches: 21, Indels: 43
0.67 0.11 0.22
Matches are distributed among these distances:
19 11 0.08
20 5 0.04
21 7 0.05
22 16 0.12
23 39 0.30
24 18 0.14
25 12 0.09
26 22 0.17
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.51
Consensus pattern (23 bp):
TTATTAATTATAATAATTAATAT
Found at i:24845 original size:27 final size:27
Alignment explanation
Indices: 24797--24866 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
24787 ATTGATTACT
*
24797 ATTAATAAATTATTATTAATTATAATA
1 ATTAATAAATTATTATTAATTAAAATA
*
24824 ATTAAT-ATTTATTATTATATTAAAATA
1 ATTAATAAATTATTATTA-ATTAAAATA
* *
24851 ATATACTTAATTATTA
1 AT-TAATAAATTATTA
24867 AAATAAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.28
27 16 0.44
28 3 0.08
29 7 0.19
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTAATAAATTATTATTAATTAAAATA
Found at i:24863 original size:26 final size:26
Alignment explanation
Indices: 24808--24867 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
24798 TTAATAAATT
* *
24808 ATTATTAATTATAATAATTAATATTT
1 ATTATTAATTAAAATAATTAATATTA
24834 ATTATTATATTAAAATAA-T-ATACTTA
1 ATTATTA-ATTAAAATAATTAATA-TTA
24860 ATTATTAA
1 ATTATTAA
24868 AATAAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 4 0.13
26 17 0.57
27 9 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTATTAATTAAAATAATTAATATTA
Found at i:24896 original size:45 final size:40
Alignment explanation
Indices: 24796--24902 Score: 108
Period size: 45 Copynumber: 2.5 Consensus size: 40
24786 TATTGATTAC
* *
24796 TATTAATAAATTATTATTAATTATAATAATTAATATTTAT
1 TATTAATAAATAATTATTAATTATAATAATAAATATTTAT
24836 TATTATATTAAAATAATATACTTAATTATTAA-AATAAATTATTGTAT
1 TATTA-A-T-AAATAAT-TA-TTAATTA-TAATAATAAA-TATT-TAT
24883 TATTAATACAATAATTATTA
1 TATTAATA-AATAATTATTA
24903 TATTTTTACT
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
40 5 0.09
41 1 0.02
42 1 0.02
43 9 0.16
44 5 0.09
45 19 0.34
46 8 0.14
47 8 0.14
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (40 bp):
TATTAATAAATAATTATTAATTATAATAATAAATATTTAT
Found at i:24980 original size:17 final size:18
Alignment explanation
Indices: 24954--25003 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
24944 TTATATATAT
24954 TAAATATAT-ATAAATTTA
1 TAAATATATAAT-AATTTA
24972 TAAAT-TATAATAATTTA
1 TAAATATATAATAATTTA
* *
24989 T-TATTTATAATAATT
1 TAAATATATAATAATT
25004 ATTAAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 2 0.07
17 20 0.69
18 7 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATATATAATAATTTA
Found at i:25132 original size:23 final size:22
Alignment explanation
Indices: 25089--25132 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25079 AAGATAATTT
* * *
25089 AATTTTTTTATATATTTATAAC
1 AATTGTTTTATATAATAATAAC
25111 AATTGTTTTAGTATAATAATAA
1 AATTGTTTTA-TATAATAATAA
25133 TAATATATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
AATTGTTTTATATAATAATAAC
Found at i:25709 original size:21 final size:23
Alignment explanation
Indices: 25685--25726 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
25675 ACTTGTTCAG
25685 TAAATAATA-TTAATT-TATAAT
1 TAAATAATATTTAATTATATAAT
25706 TAAATAATATTTAATTATATA
1 TAAATAATATTTAATTATATA
25727 TAACTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 6 0.32
23 4 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAATAATATTTAATTATATAAT
Found at i:25885 original size:13 final size:13
Alignment explanation
Indices: 25867--25908 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
25857 ATCTCAAAAT
*
25867 ATTTTAATTATTG
1 ATTTTAATAATTG
25880 ATTTTAATAATTG
1 ATTTTAATAATTG
*
25893 -TTTAAATAATT-
1 ATTTTAATAATTG
25904 ATTTT
1 ATTTT
25909 CGATAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
ATTTTAATAATTG
Found at i:27117 original size:11 final size:11
Alignment explanation
Indices: 27095--27132 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
27085 CTTAGATTTA
27095 ATAATATT-TT
1 ATAATATTATT
27105 ATAATATTATT
1 ATAATATTATT
27116 ATAATAATTATT
1 ATAAT-ATTATT
27128 A-AATA
1 ATAATA
27133 ATAATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.35
11 10 0.38
12 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
ATAATATTATT
Found at i:27340 original size:21 final size:22
Alignment explanation
Indices: 27296--27341 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
27286 AAATTGATTA
*
27296 TTAAAATTAAATAAAATAATAT
1 TTAAAATTAAATAAAATAAGAT
* *
27318 TTAAAA-TAAATACAATTAGAT
1 TTAAAATTAAATAAAATAAGAT
27339 TTA
1 TTA
27342 TAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAATTAAATAAAATAAGAT
Found at i:27920 original size:33 final size:35
Alignment explanation
Indices: 27882--27956 Score: 93
Period size: 33 Copynumber: 2.2 Consensus size: 35
27872 ATAGTTAATC
* * *
27882 ATATAATCTTAA-TATGATATAACTAATTTAT-TA
1 ATATAATCTTAATTATAATATAAATAATATATATA
27915 ATATAA-CTTAATTATAATATAAATAATATATATA
1 ATATAATCTTAATTATAATATAAATAATATATATA
27949 AGTATAAT
1 A-TATAAT
27957 AATATTACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
32 5 0.14
33 22 0.63
34 3 0.09
35 5 0.14
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (35 bp):
ATATAATCTTAATTATAATATAAATAATATATATA
Found at i:27934 original size:16 final size:16
Alignment explanation
Indices: 27882--27936 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
27872 ATAGTTAATC
*
27882 ATATAATCTTAA-TATG
1 ATATAA-CTTAATTATA
27898 ATATAAC-TAATTTATTA
1 ATATAACTTAA-TTA-TA
27915 ATATAACTTAATTATA
1 ATATAACTTAATTATA
27931 ATATAA
1 ATATAA
27937 ATAATATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 3 0.09
15 1 0.03
16 16 0.47
17 11 0.32
18 3 0.09
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (16 bp):
ATATAACTTAATTATA
Found at i:27957 original size:18 final size:18
Alignment explanation
Indices: 27893--27972 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 18
27883 TATAATCTTA
* * *
27893 ATATGATATAACTAATTT
1 ATATAATATAAATAATAT
* *
27911 AT-TAATATAACTTA-AT
1 ATATAATATAAATAATAT
27927 -TATAATATAAATAATAT
1 ATATAATATAAATAATAT
27944 ATATAAGTAT-AATAATAT
1 ATATAA-TATAAATAATAT
27962 -TACTAATATAA
1 ATA-TAATATAA
27973 GACTTATATT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
15 1 0.02
16 11 0.22
17 17 0.33
18 19 0.37
19 3 0.06
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (18 bp):
ATATAATATAAATAATAT
Found at i:28016 original size:15 final size:14
Alignment explanation
Indices: 27978--28079 Score: 50
Period size: 15 Copynumber: 7.2 Consensus size: 14
27968 TATAAGACTT
27978 ATATTAATAATTCATA
1 ATATT-ATAATT-ATA
*
27994 TTATTATAATTATA
1 ATATTATAATTATA
* *
28008 ATATGTATATTTATT
1 ATAT-TATAATTATA
* **
28023 ATA-CATACCTATA
1 ATATTATAATTATA
* *
28036 ATAGTCT-ATT-T-
1 ATATTATAATTATA
28047 ATATTATAATTATAA
1 ATATTATAATTAT-A
*
28062 ATATCATAAATTATA
1 ATATTAT-AATTATA
28077 ATA
1 ATA
28080 ATTTATAAGA
Statistics
Matches: 64, Mismatches: 15, Indels: 15
0.68 0.16 0.16
Matches are distributed among these distances:
11 5 0.08
12 4 0.06
13 11 0.17
14 7 0.11
15 27 0.42
16 10 0.16
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (14 bp):
ATATTATAATTATA
Found at i:28230 original size:12 final size:12
Alignment explanation
Indices: 28213--28255 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
28203 ATAATAAATC
*
28213 ATATTATTGTTA
1 ATATTATTATTA
28225 ATATTATTATTA
1 ATATTATTATTA
*
28237 ATTTTATTAATTA
1 ATATTATT-ATTA
28250 A-ATTAT
1 ATATTAT
28256 AATATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:28261 original size:44 final size:41
Alignment explanation
Indices: 28131--28262 Score: 106
Period size: 44 Copynumber: 3.0 Consensus size: 41
28121 TATTATTCAA
28131 TTAATATTATTATAATTTTAATTAATATGAAA-ATAATAATTATT
1 TTAATATTATTATAATTTT-ATTAAT-T-AAATATAAT-ATTATT
* * *
28175 ATAAT-TATATTATAATATTAATTCAATTATAATAAATCATATTATT
1 TTAATAT-TATTATAAT-TTTATT-AATTA-AAT--ATAATATTATT
28221 GTTAATATTATTATTAATTTTATTAATTAAATTATAATATTA
1 -TTAATATTATTA-TAATTTTATTAATTAAA-TATAATATTA
28263 AAATTGAAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
43 2 0.03
44 27 0.38
45 7 0.10
46 12 0.17
47 18 0.25
48 5 0.07
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (41 bp):
TTAATATTATTATAATTTTATTAATTAAATATAATATTATT
Found at i:29922 original size:8 final size:8
Alignment explanation
Indices: 29901--30017 Score: 67
Period size: 8 Copynumber: 13.9 Consensus size: 8
29891 TGTTTAATAA
29901 AATTAATAT
1 AATT-ATAT
*
29910 TATTATAT
1 AATTATAT
*
29918 AATTAAATT
1 AATTATA-T
*
29927 AATAATAT
1 AATTATAT
29935 AATTATAT
1 AATTATAT
*
29943 AATATTTATT
1 AAT-TATA-T
29953 ATATTATAAT
1 A-ATTAT-AT
* *
29963 AAATATTT
1 AATTATAT
29971 AA-TATAT
1 AATTATAT
*
29978 AATAATAT
1 AATTATAT
29986 -ATTATAT
1 AATTATAT
29993 AATAATATAT
1 AAT--TATAT
*
30003 AAATATAT
1 AATTATAT
*
30011 TATTATA
1 AATTATA
30018 ATTTGACTTA
Statistics
Matches: 83, Mismatches: 16, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
7 12 0.14
8 39 0.47
9 16 0.19
10 13 0.16
11 3 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTATAT
Found at i:29923 original size:17 final size:17
Alignment explanation
Indices: 29901--30000 Score: 62
Period size: 15 Copynumber: 6.5 Consensus size: 17
29891 TGTTTAATAA
29901 AATTAATATTATTATAT
1 AATTAATATTATTATAT
*
29918 AATTAA-ATTAATAATAT
1 AATTAATATT-ATTATAT
*
29935 AATT-ATA-TAATAT-T
1 AATTAATATTATTATAT
*
29949 TATT-ATATTA-TA-AT
1 AATTAATATTATTATAT
* *
29963 AAAT-AT-TTAATATAT
1 AATTAATATTATTATAT
29978 AA-TAATA-TATTATAT
1 AATTAATATTATTATAT
29993 AA-TAATAT
1 AATTAATAT
30001 ATAAATATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.04
14 17 0.25
15 25 0.37
16 5 0.07
17 17 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTAATATTATTATAT
Found at i:29969 original size:21 final size:20
Alignment explanation
Indices: 29936--30017 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 20
29926 TAATAATATA
29936 ATTATAT-AATATTTATTAT
1 ATTATATAAATATTTATTAT
*
29955 ATTATAATAAATATTTAATAT
1 ATTAT-ATAAATATTTATTAT
*
29976 A-TA-ATAATATATTATATAAT
1 ATTATATAA-ATATT-TATTAT
*
29996 AATATATAAATATATTATTAT
1 ATTATATAAATAT-TTATTAT
30017 A
1 A
30018 ATTTGACTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
18 4 0.08
19 10 0.19
20 9 0.17
21 24 0.46
22 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTATATAAATATTTATTAT
Found at i:30001 original size:25 final size:25
Alignment explanation
Indices: 29904--30019 Score: 98
Period size: 25 Copynumber: 4.6 Consensus size: 25
29894 TTAATAAAAT
29904 TAATATTATTATATAATTAA-AT-TAA
1 TAATA-TATTATATAA-TAATATATAA
* *
29929 TAATATAATTATATAAT-ATTTATTA
1 TAATAT-ATTATATAATAATATATAA
* * * *
29954 TATTATAATAAATATTTAATATATAA
1 TAATATATTATATA-ATAATATATAA
29980 TAATATATTATATAATAATATAT-A
1 TAATATATTATATAATAATATATAA
30004 -AATATATTATTATAAT
1 TAATATATTA-TATAAT
30020 TTGACTTATT
Statistics
Matches: 73, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
23 10 0.14
24 16 0.22
25 30 0.41
26 17 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TAATATATTATATAATAATATATAA
Found at i:30008 original size:33 final size:33
Alignment explanation
Indices: 29926--30010 Score: 100
Period size: 36 Copynumber: 2.5 Consensus size: 33
29916 ATAATTAAAT
* * *
29926 TAATAATATAATTATATAATATTTATTATATTA
1 TAATAATATAAATATATAATATATATTATATAA
*
29959 TAATAAATATTTAATATATAATAATATATTATATAA
1 TAAT-AATA-TAAATATATAAT-ATATATTATATAA
29995 TAAT-ATATAAATATAT
1 TAATAATATAAATATAT
30011 TATTATAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 12 0.27
34 7 0.16
35 10 0.23
36 15 0.34
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (33 bp):
TAATAATATAAATATATAATATATATTATATAA
Found at i:30010 original size:10 final size:11
Alignment explanation
Indices: 29913--30010 Score: 66
Period size: 10 Copynumber: 9.3 Consensus size: 11
29903 TTAATATTAT
29913 TATATAAT-TA
1 TATATAATATA
*
29923 AAT-TAATA-A
1 TATATAATATA
*
29932 TATAATTATATAA
1 TAT-ATAATAT-A
* *
29945 TATTTATTATA
1 TATATAATATA
*
29956 T-TATAATAAA
1 TATATAATATA
*
29966 TATTTAATATA
1 TATATAATATA
29977 TA-ATAATATA
1 TATATAATATA
29987 TTATATAATA-A
1 -TATATAATATA
29998 TATATAA-ATA
1 TATATAATATA
30008 TAT
1 TAT
30011 TATTATAATT
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
9 8 0.12
10 27 0.40
11 18 0.27
12 10 0.15
13 4 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TATATAATATA
Found at i:30049 original size:16 final size:17
Alignment explanation
Indices: 30008--30042 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
29998 TATATAAATA
*
30008 TATTATTATAATTTGACT
1 TATTA-TATAATTTAACT
30026 TATTATATAATTTAACT
1 TATTATATAATTTAACT
30043 GTTATATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTATATAATTTAACT
Found at i:30826 original size:23 final size:23
Alignment explanation
Indices: 30777--30828 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
30767 ATTTATTTGT
* * *
30777 ATTAATTATAATTAATTATTAAT
1 ATTAATTATAATTAAATATGAAA
30800 ATTAATTATAATTATAATA-GAAA
1 ATTAATTATAATTA-AATATGAAA
30823 ATTAAT
1 ATTAAT
30829 ATATGTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTAATTATAATTAAATATGAAA
Done.