Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168393.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_61, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142147
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 2 of 5
Found at i:30864 original size:17 final size:19
Alignment explanation
Indices: 30844--30884 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
30834 TTAAATTTTA
30844 ATTAGATTATTAA-AT-AT
1 ATTAGATTATTAATATAAT
*
30861 ATTAATATTATTAATATAAT
1 ATT-AGATTATTAATATAAT
30881 ATTA
1 ATTA
30885 ATAATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 3 0.15
18 9 0.45
19 3 0.15
20 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTAGATTATTAATATAAT
Found at i:30885 original size:11 final size:10
Alignment explanation
Indices: 30851--30887 Score: 51
Period size: 9 Copynumber: 3.8 Consensus size: 10
30841 TTAATTAGAT
30851 TATTAA-ATA
1 TATTAATATA
30860 TATTAATAT-
1 TATTAATATA
30869 TATTAATATAA
1 TATTAATAT-A
30880 TATTAATA
1 TATTAATA
30888 ATTTATTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 15 0.60
10 2 0.08
11 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TATTAATATA
Found at i:31293 original size:183 final size:182
Alignment explanation
Indices: 30937--31319 Score: 461
Period size: 182 Copynumber: 2.1 Consensus size: 182
30927 AACTTCTATT
* * *
30937 AACTGAAACAATTGTTTTATGATAAATCAAAAGGTTATAACAATTTTAAATAGACAATTGTTCAA
1 AACTGAAACAATTGTTTTATGATAAATCAAAAGGTTAGAACAATTTCAAATAAACAATTGTTCAA
* * * * * *
31002 ATAGTGATAACTGTTTGAACTTGTTCGATAAATAGATTTATTTTTTTAAATCTCTTTCTTATTAA
66 ATAGTCATAACTATTTGAACTTATTCGATAAACAAATTTATTTTTTAAAATCTCTTTCTTATTAA
* * * **
31067 TTTTTTAAATGTTAATAAATTAGTATTAATTTATTTTAAATAAGCTTGTATG
131 TTTTTGAAATATTAATAAATTAGTATTAATTTAATCAAAATAAGCTTGTATG
* * * *
31119 AACTGAAGCAATTGTTTTATGACTAAA-CAAAATGTTAGAACAATTTCAAATAAATAATTGTTCT
1 AACTGAAACAATTGTTTTATGA-TAAATCAAAAGGTTAGAACAATTTCAAATAAACAATTGTTCA
* * *
31183 AATAGTCTTAATTATTTGAA-TTAAATTCGATAAACAAATTTATTTTTTAAAATCT-TTTGCTTC
65 AATAGTCATAACTATTTGAACTT--ATTCGATAAACAAATTTATTTTTTAAAATCTCTTT-CTTA
* *
31246 TTAATTTTTGAAATATTATTAAATTAGTATT-ATTCTAATCAAAATAAGCTTGTACG
127 TTAATTTTTGAAATATTAATAAATTAGTATTAATT-TAATCAAAATAAGCTTGTATG
* *
31302 TAC-AAAACAATTGTTTTA
1 AACTGAAACAATTGTTTTA
31320 CGACAAAAGA
Statistics
Matches: 170, Mismatches: 26, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
181 2 0.01
182 87 0.51
183 81 0.48
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.43
Consensus pattern (182 bp):
AACTGAAACAATTGTTTTATGATAAATCAAAAGGTTAGAACAATTTCAAATAAACAATTGTTCAA
ATAGTCATAACTATTTGAACTTATTCGATAAACAAATTTATTTTTTAAAATCTCTTTCTTATTAA
TTTTTGAAATATTAATAAATTAGTATTAATTTAATCAAAATAAGCTTGTATG
Found at i:31820 original size:177 final size:181
Alignment explanation
Indices: 31525--31864 Score: 440
Period size: 177 Copynumber: 1.9 Consensus size: 181
31515 TCATAACAAT
31525 TTGAAATGGTTTGGTAAATAGAATTAACTTTTTAAATCTCTTACTGATTAATTTTCTAAATATTA
1 TTGAAATGGTTTGGTAAATAGAATTAACTTTTTAAATCTCTTACTGA-TAATTTTCTAAATATTA
* *
31590 ATAAATTAGTATTATTTTATTTCGAACAAACTTACATTAATAAAAGCAATTGTTTTACGACAAAA
65 ATAAATTAGTATTATTATATTTCGAACAAACTTACATGAATAAAAGCAATTGTTTTACGACAAAA
** * *
31655 CAAAAAGTAATAATGATTTAAAATAGATAATTGCCTAAATATTTATAATAAC
130 CAAAAAGTAATAACAAATTAAAATAAATAATTGCCTAAATATTTATAATAAC
* *
31707 TTGAACTGGTTTGGTAAATAGAATT-A-TTTTCTAAATCTCTTA-T-A-AATTTTTTAAATATTA
1 TTGAAATGGTTTGGTAAATAGAATTAACTTTT-TAAATCTCTTACTGATAATTTTCTAAATATTA
* * * ** * * * *
31767 ATAAATTAGTTTTATTATATTTCGAATACACTTGTATGAGCTGAAA-TAATTGTTTTATGACAAA
65 ATAAATTAGTATTATTATATTTCGAACAAACTTACATGA-ATAAAAGCAATTGTTTTACGACAAA
* *
31831 ACAAAAGGTCATAACAAATTAAAATAAATAATTG
129 ACAAAAAGTAATAACAAATTAAAATAAATAATTG
31865 TTCATTTAGT
Statistics
Matches: 137, Mismatches: 19, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
177 91 0.66
178 4 0.03
179 1 0.01
180 5 0.04
181 12 0.09
182 24 0.18
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (181 bp):
TTGAAATGGTTTGGTAAATAGAATTAACTTTTTAAATCTCTTACTGATAATTTTCTAAATATTAA
TAAATTAGTATTATTATATTTCGAACAAACTTACATGAATAAAAGCAATTGTTTTACGACAAAAC
AAAAAGTAATAACAAATTAAAATAAATAATTGCCTAAATATTTATAATAAC
Found at i:32765 original size:183 final size:175
Alignment explanation
Indices: 31925--32985 Score: 424
Period size: 180 Copynumber: 5.9 Consensus size: 175
31915 ATAAATGTTA
* * ** ** * * *
31925 ATAAATTAATATTATTTTATTTTAAATAAGCTTTTATGAACTAAATCAACTATTTTAT-AGCTAA
1 ATAAATTAGTATTATTTTATTCTAAATAAGCTTGAATGAAAAAAAACAATTATTCTATGA-C-AA
* * * * * * * *
31989 ACA-AAAAG-TCAAAACAATTTAAAATTGATAATTATTCTAATAGTCTTAACTATTTGAACTAGT
64 A-ATAAAAGATCATAACAATTTGAGATAGATAATTATTCAAATAATCATAACTATTTGAA-TTGT
* ** **
32052 TCGGTAAACACATTTATTTTTTAAATCTCTTGCTAATTTT-TGGAATATT-
127 TC-GAAAACACATTTATTTTTTAAATCTCTTATTAATTTTCAAG-ATATTG
* * ** * * *
32101 ATTAAATTAATATTATTTT-TATCCAAATAAGCTT-AGATGATTAGAAACAATTGTT-TATTGAG
1 A-TAAATTAGTATTATTTTAT-TCTAAATAAGCTTGA-ATGAAAAAAAACAATTATTCTA-TGAC
* * ** * * * * * *
32163 AAAA-GAATGATCATAATGATTTGAGATTGATATTTGTTTAAATAGTCATAACTATTTGAACTAG
62 AAAATAAAAGATCATAACAATTTGAGATAGATAATTATTCAAATAATCATAACTATTTGAA-TTG
* * ** * * *
32227 TTTGGAAAATAGTTTTAGTTTTTAAATCTCTTGCTTACTAATTTTCTAA-ATATTA
126 -TTCGAAAACACATTTATTTTTTAAA--TC-T-CTTATTAATTTTC-AAGATATTG
* * * * * ** *** *
32282 ATAAAGTATTATTATTTTATTTTGAATAAATCTT-TTTGAACTGAAACAATTGCTT-TATGACAA
1 ATAAATTAGTATTATTTTATTCTAAAT-AAGCTTGAATGAAAAAAAACAATT-ATTCTATGACAA
* * * * * * * * **
32345 AACAAAAGGTTATAACAATTTTAAATAGTTAGAATGATTGTTCAAATAGTCA-AATCCCTTTGAA
64 AATAAAAGATCATAACAA-TTT---GAGATAG-ATAATTATTCAAATAATCATAA-CTATTTGAA
* * ** * *
32409 CTTGTTCAGTAAATA-AAAT-TTTTTTAAATCTCTTGCTCATTAATTTTTCAA-ATGTTA
123 -TTGTTC-GAAAACACATTTATTTTTTAAATCTC-T--T-ATTAA-TTTTCAAGATATTG
** * * *** * * * *
32466 ATAAATTAGTATTATTTTATTCTGGAT-AGACTTGTATTAATTGAAATAATTGTTTTATGACTAA
1 ATAAATTAGTATTATTTTATTCTAAATAAG-CTTGAATGAAAAAAAACAATTATTCTATGACAAA
* * * * * *
32530 ATAAAATGTTC-GAACAATTTGAAATAGGTAATTATTCTAATAGT-ATTAACTATTTGAATTGCT
65 ATAAAA-GATCATAACAATTTGAGATAGATAATTATTCAAATAATCA-TAACTATTTGAATTG-T
* ***
32593 TCGACAAACACATTTATTTTTTAAATCTCTTACTTATTTTTTTTGGAATATT-
127 TCGA-AAACACATTTATTTTTTAAATCTCTTA-TTA-ATTTTCAAG-ATATTG
* * *
32645 ATTAAATTAGTATTGTTTTAATTC-GAATAAGCTTGAATGAAAAAAAAAAACCAATTGTTCTATG
1 A-TAAATTAGTATTATTTT-ATTCTAAATAAGCTTGAATG---AAAAAAAA-CAATTATTCTATG
* *
32709 ACAAAAT-AAAGATCATAACGATTTGAGATAGATAATTATTCAAATAATCATAACTATTTAAATT
60 ACAAAATAAAAGATCATAACAATTTGAGATAGATAATTATTCAAATAATCATAACTATTTGAATT
* * * *
32773 GTTTTAGAAAATAGATTTAGTTTTTAAATCTCTTATTAATTTTCAAGATATTG
125 G--TTCGAAAACACATTTATTTTTTAAATCTCTTATTAATTTTCAAGATATTG
* ** * * ** *
32826 ATAGATTAGTATTATTTTATTCTAAATAATTTTGCATGAACAGTAACAATTATTTTATGACAAAA
1 ATAAATTAGTATTATTTTATTCTAAATAAGCTTGAATGAAAAAAAACAATTATTCTATGACAAAA
* * * *
32891 TAAAAGGTCATAACAATTTGAAGA-AGATAATTTTTCAAATGGA-CATGACTATTTGAACTTGTT
66 TAAAAGATCATAACAATTTG-AGATAGATAATTATTCAAAT-AATCATAACTATTTGAA-TTGTT
* * *
32954 CGATAAACATATTTGTTTTTTAAATCCCTTAT
128 CGA-AAACACATTTATTTTTTAAATCTCTTAT
32986 CTATTAATTT
Statistics
Matches: 673, Mismatches: 151, Indels: 121
0.71 0.16 0.13
Matches are distributed among these distances:
175 4 0.01
176 90 0.13
177 115 0.17
178 23 0.03
179 33 0.05
180 124 0.18
181 47 0.07
182 12 0.02
183 82 0.12
184 95 0.14
185 16 0.02
186 32 0.05
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (175 bp):
ATAAATTAGTATTATTTTATTCTAAATAAGCTTGAATGAAAAAAAACAATTATTCTATGACAAAA
TAAAAGATCATAACAATTTGAGATAGATAATTATTCAAATAATCATAACTATTTGAATTGTTCGA
AAACACATTTATTTTTTAAATCTCTTATTAATTTTCAAGATATTG
Found at i:32975 original size:541 final size:538
Alignment explanation
Indices: 32001--32996 Score: 1162
Period size: 544 Copynumber: 1.8 Consensus size: 538
31991 AAAAAGTCAA
* * **
32001 AACAATTTAAAATTGATAATTATTCTAATAGTCTTAACTATTTGAACTAGTTCGGTAAACACATT
1 AACAATTTAAAATAGATAATTATTCTAATAGTATTAACTATTTGAACTAGTTCGACAAACACATT
* *
32066 TATTTTTTAAATCTCTTGCTAATTTTTGGAATATTATTAAATTAATATTATTTTTATCCAAATAA
66 TATTTTTTAAATCTCTTACTAATTTTTGGAATATTATTAAATTAATATTATTTTAATCCAAATAA
** * * * * * *
32131 GCTTAGATGATTAGAAACAATTGTTTATTGAGAAAAGAATGATCATAATGATTTGAGATTGATAT
131 GCTTAGATGAAAAAAAACAATTGTTTATTGACAAAAGAAAGATCATAACGATTTGAGATAGATAA
* * * * * *
32196 TTGTTTAAATAGTCATAACTATTTGAACTAGTTTGGAAAATAGTTTTAGTTTTTAAATCTCTTGC
196 TTATTCAAATAATCATAACTATTTGAAATAGTTTAGAAAATAGATTTAGTTTTTAAA-CTCTTGC
* * * * *
32261 TTACTAATTTTCTAAATATTAATAAAGTATTATTATTTTATTTTGAATAAATCTTTTTGAACTGA
260 TTACTAATTTTCTAAATATTAATAAAGTAGTATTATTTTATTCTAAATAAATCTTTATGAACAGA
* * *
32326 AACAATTGCTTTATGACAAAACAAAAGGTTATAACAATTTTAAATAGTTAGAATGATTGTTCAAA
325 AACAATTACTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAG-TAGAAT-ATTGTTCAAA
* * * * *
32391 TAGTCAAATCCCTTTGAACTTGTTCAGTAAATAAAATTTTTTTAAATCTCTT-GCTCATTAATTT
388 TAGACAAATCCATTTGAACTTGTTCAGTAAACAAAATTTTTTTAAATCCCTTATCT-ATTAATTT
32455 TTCAAATGTTAATAAATTAGTATTATTTTATTCTGGATAGACTTGTATTAATTGAAATAATTGTT
452 TTCAAATGTTAATAAATTAGTATTATTTTATTCTGGATAGACTTGTATTAATTGAAATAATTGTT
32520 TTATGACTAAATAAAATGTTCG
517 TTATGACTAAATAAAATGTTCG
* * *
32542 AACAATTTGAAATAGGTAATTATTCTAATAGTATTAACTATTTGAA-TTGCTTCGACAAACACAT
1 AACAATTTAAAATAGATAATTATTCTAATAGTATTAACTATTTGAACTAG-TTCGACAAACACAT
* * * * *
32606 TTATTTTTTAAATCTCTTACTTATTTTTTTTGGAATATTATTAAATTAGTATTGTTTTAATTCGA
65 TTATTTTTTAAATCTCTTAC-TA--ATTTTTGGAATATTATTAAATTAATATTATTTTAATCCAA
*
32671 ATAAGCTT-GAATGAAAAAAAAAAACCAATTGTTCTA-TGACAAAATAAAGATCATAACGATTTG
127 ATAAGCTTAG-ATG---AAAAAAAA-CAATTGTT-TATTGACAAAAGAAAGATCATAACGATTTG
*
32734 AGATAGATAATTATTCAAATAATCATAACTATTT-AAATTGTTTTAGAAAATAGATTTAGTTTTT
186 AGATAGATAATTATTCAAATAATCATAACTATTTGAAATAG-TTTAGAAAATAGATTTAGTTTTT
* * * *
32798 AAA-TC-T-CTTATTAATTTTC-AAGATATTGATAGATTAGTATTATTTTATTCTAAAT-AAT-T
250 AAACTCTTGCTTACTAATTTTCTAA-ATATTAATAAAGTAGTATTATTTTATTCTAAATAAATCT
* * * *
32857 TTGCATGAACAGTAACAATTATTTTATGACAAAATAAAAGGTCATAACAATTTGAAGA-AG-ATA
314 TT--ATGAACAGAAACAATTACTTTATGACAAAACAAAAGGTCATAACAATTTGAA-ATAGTAGA
* * * **
32920 AT-TT-TTCAAATGGACATGA-CTATTTGAACTTGTTC-GATAAACATATTTGTTTTTTAAATCC
376 ATATTGTTCAAATAGACA-AATCCATTTGAACTTGTTCAG-TAAACA-AAAT-TTTTTTAAATCC
32981 CTTATCTATTAATTTT
437 CTTATCTATTAATTTT
32997 AGAATATTTC
Statistics
Matches: 379, Mismatches: 56, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
538 1 0.00
539 29 0.08
540 7 0.02
541 96 0.25
542 11 0.03
543 6 0.02
544 130 0.34
545 2 0.01
546 2 0.01
547 9 0.02
548 84 0.22
549 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (538 bp):
AACAATTTAAAATAGATAATTATTCTAATAGTATTAACTATTTGAACTAGTTCGACAAACACATT
TATTTTTTAAATCTCTTACTAATTTTTGGAATATTATTAAATTAATATTATTTTAATCCAAATAA
GCTTAGATGAAAAAAAACAATTGTTTATTGACAAAAGAAAGATCATAACGATTTGAGATAGATAA
TTATTCAAATAATCATAACTATTTGAAATAGTTTAGAAAATAGATTTAGTTTTTAAACTCTTGCT
TACTAATTTTCTAAATATTAATAAAGTAGTATTATTTTATTCTAAATAAATCTTTATGAACAGAA
ACAATTACTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGTAGAATATTGTTCAAATAG
ACAAATCCATTTGAACTTGTTCAGTAAACAAAATTTTTTTAAATCCCTTATCTATTAATTTTTCA
AATGTTAATAAATTAGTATTATTTTATTCTGGATAGACTTGTATTAATTGAAATAATTGTTTTAT
GACTAAATAAAATGTTCG
Found at i:33374 original size:180 final size:180
Alignment explanation
Indices: 33052--34689 Score: 1112
Period size: 180 Copynumber: 9.2 Consensus size: 180
33042 TGACAAAACA
* * *
33052 AAATA-TCATAACTATTTGAACTTGTTCAGTAAATAGATTTA-TTTTATAAATATTTT-CTTACT
1 AAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGATTTATTTTTA-AAATCTTTTATTTA-T
* * * * * * * *
33114 AATTTTTGGAATATGAATGAACTAATATTATTTTATTTCAAATATGGTTGAATGAACAGAAACAA
64 AATTTTTTGAATATTAATAAATTTATATTATTTTATTTCAAATAAGCTTGTATGAACAGAAACAA
** *
33179 TTGGTTTATAACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
129 TTATTTTATGACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
* * *
33231 AAATAGTTATAACTATTTGAACATGTTCAGAAAATAGATTTATTTTTAAAAT-TTTTATTTGTAA
1 AAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGATTTATTTTTAAAATCTTTTATTTAT-A
* ** *
33295 ATTTTTTGAAAATTAATAAATTTATATTATTTTATTTGGAATAAGCTTGTATGAACAGAAGCAAT
65 ATTTTTTGAATATTAATAAATTTATATTATTTTATTTCAAATAAGCTTGTATGAACAGAAACAAT
** * *
33360 TATTTTACAACAAAACAAAATGTCATAA-TGATTTGAACTAGAAAATTGTTC
130 TATTTTATGACAAAACAAAATGTCATAACT-ATTTGAAATAGATAATTGTTC
* * ** *
33411 AAATAGTCA-AACTATTTGAATTTGTTC-GATAAATAGATTTATTTTTTAAATCCCTTATTCATT
1 AAATAGTCATAACTATTTGAACTTGTTCAGA-AAATAGATTTATTTTTAAAATCTTTTATTTA-T
* * * * ** *
33474 AATTTTTGGAATATTAATAAA-TTAGTATTATTTTATTTCAAATAAACCTATATGAATTGATACA
64 AATTTTTTGAATATTAATAAATTTA-TATTATTTTATTTCAAATAAGCTTGTATGAACAGAAACA
* ** * * *
33538 ATTGTTTTATGATGAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTC
128 ATTATTTTATGACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
* * * * * * * * *
33591 AAATAGTTATGACTGTTTGAACTTATTCAGTAAACATATTTATTTTTAAAATTTTTTAATTATTA
1 AAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGATTTATTTTTAAAATCTTTTATTTA-TA
* * * ** * * *
33656 A-TTGTTGAAATATTAATAAATTAATATTAGTTTAAATCGAATAAGCTTGTATGAA-TGAAAATA
65 ATTTTTTG-AATATTAATAAATTTATATTATTTTATTTCAAATAAGCTTGTATGAACAG-AAACA
* * * * * * *
33719 ATTGTTTTATGACAAAA-AAAA-GTCATAACAATTTGACATAAACAACTATTC
128 ATTATTTTATGACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
* * * * ** * * * *
33770 AAATAGTCATAACGATTAGAACTTATT-TGGTAATCAAAGTTATTTTTTAAATCTTTTACTTATT
1 AAATAGTCATAACTATTTGAACTTGTTCAGAAAAT-AGATTTATTTTTAAAATCTTTTATTTA-T
* * * * * * * *
33834 AATTGTCTGAATATTAATAAATTTTTATTATTTTAATTGAAATAAACTTGTATGAATAGAAAAAA
64 AATTTTTTGAATATTAATAAATTTATATTATTTTATTTCAAATAAGCTTGTATGAACAGAAACAA
* * * * * * * *
33899 TTATTTTATGCCAAAACAAAAAGGTTATAGCGATTTGATATAGGTAATTGTTG
129 TTATTTTATGACAAAAC-AAAATGTCATAACTATTTGAAATAGATAATTGTTC
* * *
33952 AAATAGTCATAACTATTTGAACTTATTC-GATAAATAGATTCAGTTTTT-AAATCTCTTA--T-T
1 AAATAGTCATAACTATTTGAACTTGTTCAGA-AAATAGATTTA-TTTTTAAAATCTTTTATTTAT
* * * * * * * * *
34012 AATTTTTGGAATATTACTAAATTAAAATTATATTATTCCCAGTAAGCTTGTATGAACAGAAATAA
64 AATTTTTTGAATATTAATAAATTTATATTATTTTATTTCAAATAAGCTTGTATGAACAGAAACAA
* * * * * * *
34077 TTTTTTTGTGACAAAATAAAATGTTATAACAATTT-AAATAAATAATTATTC
129 TTATTTTATGACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
* * * * ** * * ** ***
34128 AAACAGTCATAACTATTTGCAC-TGGTCAAGCCAACCA-ATTCATTTTTTAAATCCATTACACAT
1 AAATAGTCATAACTATTTGAACTTGTTC-AG-AAAATAGATTTATTTTTAAAATCTTTTATTTA-
* * * * *
34191 TAATTTTTAGAATATTAATAAA-TTAGCATTATTTTA-TTCTAAATAAGAC-TATATCAATAGAA
63 TAATTTTTTGAATATTAATAAATTTA-TATTATTTTATTTC-AAATAAG-CTTGTATGAACAGAA
*
34253 ACAATTATTTTATGATAAAAC-AAATGGTCATAA-TGATTTGAAAT-GAATAATTGTTC
125 ACAATTATTTTATGACAAAACAAAAT-GTCATAACT-ATTTGAAATAG-ATAATTGTTC
* * * * * * * * * *
34309 AAATTGTTATAACTAATTGAACTAG-TCTGGTAAACAGATTTATTTTTCAAATCTCTTA--T-TG
1 AAATAGTCATAACTATTTGAACTTGTTC-AGAAAATAGATTTATTTTTAAAATCTTTTATTTATA
*** * * * * * * * *
34370 ATTTTCAAAATATTAATCAATTAATATTATTATA-TGCTAAACAAACTTATATGAACA-AAACAT
65 ATTTTTTGAATATTAATAAATTTATATTATTTTATTTC-AAATAAGCTTGTATGAACAGAAACAA
* * * * *
34433 TTGTTTTACGACAAAACAAAAGGTCATAA-TGATTTGAAATAAATAATTATTC
129 TTATTTTATGACAAAACAAAATGTCATAACT-ATTTGAAATAGATAATTGTTC
* * * * * * * *
34485 ATATATTCAAAACTATTTAAAACTAGATC-GATAAATAGATTTAGTTTTT-AAATAC---CATAT
1 AAATAGTCATAACTATTT-GAACTTGTTCAGA-AAATAGATTTA-TTTTTAAAAT-CTTTTATTT
* ** *
34545 -TAA-TTTTTGAAATATTAATAAA-TTAGTATTATTTTA-TTCTGAATAATTTTGTATGAACAAA
62 ATAATTTTTTG-AATATTAATAAATTTA-TATTATTTTATTTC-AAATAAGCTTGTATGAACAGA
* * *
34606 AACAATTATTTTATGACAAAACAAAATGTCATAACAATTTGAAACAGATAATAGTTC
124 AACAATTATTTTATGACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
*
34663 AAATAGACATAACTATTTGAACTTGTT
1 AAATAGTCATAACTATTTGAACTTGTT
34690 TAGTAAATTT
Statistics
Matches: 1142, Mismatches: 261, Indels: 114
0.75 0.17 0.08
Matches are distributed among these distances:
175 9 0.01
176 109 0.10
177 130 0.11
178 140 0.12
179 190 0.17
180 337 0.30
181 156 0.14
182 63 0.06
183 8 0.01
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.40
Consensus pattern (180 bp):
AAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGATTTATTTTTAAAATCTTTTATTTATAA
TTTTTTGAATATTAATAAATTTATATTATTTTATTTCAAATAAGCTTGTATGAACAGAAACAATT
ATTTTATGACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTC
Found at i:33815 original size:360 final size:358
Alignment explanation
Indices: 33052--36744 Score: 2331
Period size: 360 Copynumber: 10.4 Consensus size: 358
33042 TGACAAAACA
* * * * * * *
33052 AAATA-TCATAACTATTTGAACTTGTTCAGTAAAT-AGATTTATTTTATAAATAT-TTTCTTACT
1 AAATAGTCATAACTATTTGAACTTATTCGGT-AATCAAATTTATTTTTTAAATCTCTTACTTATT
* * * * *** *
33114 AATTTTTGGAATATGAATGAACTAATATTATTTTATTTCAAATATGGTTGA-ATGAACAGAAACA
65 AATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTT-ATATGAACAAAAACA
** * * *
33178 ATTGGTTTATAACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTCAAATAGTTATAA
129 ATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATAA
* * * * * *
33243 CTATTTGAACATGTTCAGAAAATAGATTTATTTTTAAAATTTTTATTTGTAAATTTTTTGAAA-A
194 CTATTTGAACTTATTCAGTAAATAGATTTATTTTT-AAATTTTTACTTATTAA-TTTTTGAAATA
* * * **
33307 TTAATAAATTTATATTATTTTATTTGGAATAAGCTTGTATGAA-CAGAAGCAATTATTTTACAAC
257 TTAATAAATTAATATTA-TTTATTTCGAATAAGCTTGTATGAATCA-AAACAATTATTTTATGAC
** * *
33371 AAAACAAAATGTCATAATGATTTGAACTAGAA-AATTGTTC
320 AAAACAAAA-GTCATAACAATTTGAAATA-AATAATTATTC
* * * * *
33411 AAATAGTCA-AACTATTTGAATTTGTTCGATAAAT-AGATTTATTTTTTAAATCCCTTA-TTCAT
1 AAATAGTCATAACTATTTGAACTTATTCGGT-AATCAAATTTATTTTTTAAATCTCTTACTT-AT
* *** *
33473 TAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACCTATATGAATTGATACA
64 TAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAACA
* ** * *
33538 ATTGTTTTATGATGAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTTATGA
129 ATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATAA
* * * * *
33603 CTGTTTGAACTTATTCAGTAAACATATTTATTTTTAAAATTTTTTAATTATTAATTGTTGAAATA
194 CTATTTGAACTTATTCAGTAAATAGATTTATTTTT-AAA-TTTTTACTTATTAATTTTTGAAATA
** * * *
33668 TTAATAAATTAATATTAGTTTAAATCGAATAAGCTTGTATGAATGAAAATAATTGTTTTATGACA
257 TTAATAAATTAATATTA-TTTATTTCGAATAAGCTTGTATGAATCAAAACAATTATTTTATGACA
* * *
33733 AAA-AAAAGTCATAACAATTTGACATAAACAACTATTC
321 AAACAAAAGTCATAACAATTTGAAATAAATAATTATTC
* * * * *
33770 AAATAGTCATAACGATTAGAACTTATTTGGTAATCAAAGTTATTTTTTAAATCTTTTACTTATTA
1 AAATAGTCATAACTATTTGAACTTATTCGGTAATCAAATTTATTTTTTAAATCTCTTACTTATTA
* ** * * * *
33835 ATTGTCT-GAATATTAATAAATTTTTATTATTTTAATTGAAATAAACTTGTATGAATAGAAAA-A
66 ATT-TTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACA-AAAACA
* * * * * * *
33898 ATTATTTTATGCCAAAACAAAAAGGTTATAGCGATTTGATATAGGTAATTGTTGAAATAGTCATA
129 ATTATTTTATGACAAAAC-AAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATA
* * *
33963 ACTATTTGAACTTATTC-GATAAATAGATTCAGTTTTTAAA--TCT-CTTATTAATTTTTGGAAT
193 ACTATTTGAACTTATTCAG-TAAATAGATTTA-TTTTTAAATTTTTACTTATTAATTTTTGAAAT
* * * * * * * *
34024 ATTACTAAATTAAAATTATATTATTCCCAGTAAGCTTGTATGAA-CAGAAATAATTTTTTTGTGA
256 ATTAATAAATTAATATTAT-TTATTTCGAATAAGCTTGTATGAATCA-AAACAATTATTTTATGA
* *
34088 CAAAATAAAATGTTATAACAATTT-AAATAAATAATTATTC
319 CAAAACAAAA-GTCATAACAATTTGAAATAAATAATTATTC
* * ** ** * * **
34128 AAACAGTCATAACTATTTGCAC-TGGTCAAGCCAA-CCAATTCATTTTTTAAATC-CATTACACA
1 AAATAGTCATAACTATTTGAACTTATTC--GGTAATCAAATTTATTTTTTAAATCTC-TTACTTA
* * * * *
34190 TTAATTTTTAGAATATTAATAAATTAGCATTATTTTA-TTCTAAATAAGAC-TATATCAATAGAA
63 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC-AAATAA-ACTTATATGAACAAAA
* * * *
34253 ACAATTATTTTATGATAAAACAAATGGTCATAATGATTTGAAAT-GAATAATTGTTCAAATTGTT
126 ACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG-ATAATTGTTCAAATAGTT
* * * * * * **
34317 ATAACTAATTGAAC-TAGTCTGGTAAACAGATTTATTTTTCAAA--TCT-CTTATTGATTTTCAA
190 ATAACTATTTGAACTTATTC-AGTAAATAGATTTATTTTT-AAATTTTTACTTATTAATTTTTGA
* * * * * * * *
34378 AATATTAATCAATTAATATTA-TTATATGCTAAACAAACTTATATGAA-CAAAACATTTGTTTTA
253 AATATTAATAAATTAATATTATTTAT-TTC-GAATAAGCTTGTATGAATCAAAACAATTATTTTA
* **
34441 CGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTC
316 TGACAAAACAAAA-GTCATAACAATTTGAAATAAATAATTATTC
* * * * * * * *
34485 ATATATTCAAAACTATTTAAAAC-TAGATCGATAAAT-AGATTTAGTTTTTAAATAC-C--A--T
1 AAATAGTCATAACTATTT-GAACTTA-TTCGGT-AATCAAATTTATTTTTTAAAT-CTCTTACTT
* * ** *
34543 ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA-TTCTGAATAATTTTGTATGAACAAAA
62 ATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC-AAATAAACTTATATGAACAAAA
* * * * **
34607 ACAATTATTTTATGACAAAACAAAATGTCATAACAATTTGAAACAGATAATAGTTCAAATAGACA
126 ACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTA
* * * *
34672 TAACTATTTGAACTTGTT---T-AGTA-A---A-TTTT-CA-----ACTCATTAA-TTTT-ATAA
191 TAACTATTTGAACTTATTCAGTAAATAGATTTATTTTTAAATTTTTACTTATTAATTTTTGA-AA
* * * ** *
34720 TATCAATAAATTAGTATTATTT-TATTCTAAATAAAATTTTATGAAT-AGAAACAATTATTTTAT
255 TATTAATAAATTAATATTATTTAT-TTC-GAATAAGCTTGTATGAATCA-AAACAATTATTTTAT
* * *
34783 GACCAAATAAAAGATCATAACAATTTGAAATAAATAATTGTTC
317 GACAAAACAAAAG-TCATAACAATTTGAAATAAATAATTATTC
* * * * *
34826 AAATAGTCATAACTATTTGAACTCACTT-GTTAAAT-AGATTTATTTTATAAATCTTTTACTTAT
1 AAATAGTCATAACTATTTGAACTTA-TTCGGT-AATCAAATTTATTTTTTAAATCTCTTACTTAT
* * * * *
34889 TAATTTTTGGAATA--AATAAATTAATATTATTTTATTCCAACTAAGA-TTGTATGAACAGAAAC
64 TAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAA-ACTTATATGAACAAAAAC
* *
34951 AATTAGTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTTATA
128 AATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATA
* * * * * *
35016 ACTATTTGAACATT-TTCAGAAAACAAATTTATTTTTAAAATTTTTGCTTTTTAATTTCT-AGAA
193 ACTATTTGAAC-TTATTCAGTAAATAGATTTATTTTT-AAATTTTTACTTATTAATTTTTGA-AA
* * *
35079 TATTAATAAATTTATATTATTT-TATTCGAAATAAGCTTGCATG-ATCAGAACCAATTATTTTAT
255 TATTAATAAATTAATATTATTTAT-TTCG-AATAAGCTTGTATGAATCA-AAACAATTATTTTAT
* *** * *
35142 AACAAAACAAAAAGGTCATAATGTTTTGAAATAGATAATTGTT-
317 GACAAAAC-AAAA-GTCATAACAATTTGAAATAAATAATTATTC
* *
35185 ---TAG--ATAA-TCA--T-AAC--A------AA--AAATTCT-TTTTTTAATTCTCATT-CTCA
1 AAATAGTCATAACT-ATTTGAACTTATTCGGTAATCAAATT-TATTTTTTAAATCTC-TTACTTA
* * * * ** * *
35229 TTTATTCTCGGAATATTAATAAATTAGTATTATTTTACTTCAAATAAGTTTATATGAACTAAAAT
63 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAAC
* * * * *
35294 GATTGTTTTATTACAAAAGAAATGG---T--C-A--T--AAT-GAT--TTG---AAATAGTTATA
128 AATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATA
* ** * * *
35343 ATTATTTGAAC-TAGTTTGGTAAATAGAATTATTTTCTAAATCTCTTACTTATAAATTTTTGAAA
193 ACTATTTGAACTTA-TTCAGTAAATAGATTTATTTT-TAAAT-TTTTACTTATTAATTTTTGAAA
* * * * * * *
35407 TATTAATAAATTAGTTTTATTCT-TTCTTGAATAACCTTGTATG-AGCTGAAATAA-TATTTTTA
255 TATTAATAAATTAATATTATT-TATT-TCGAATAAGCTTGTATGAATC-AAAACAATTA-TTTTA
*
35469 TGACAAAACAAAAGCTCATAACAATTTGAAATAAATCATTATTC
316 TGACAAAACAAAAG-TCATAACAATTTGAAATAAATAATTATTC
* * * * * * *
35513 ATATAGTCTTAACTATTTCAACTTATTCGGCAAACAGATTTATTTTTTAAATCTCTTAGTTATTA
1 AAATAGTCATAACTATTTGAACTTATTCGGTAATCAAATTTATTTTTTAAATCTCTTACTTATTA
* * * * * * * *
35578 ATTTTTAGAATTTTACTAAATTAGTATTATTTTA-ATCTGAATAAGCTTGTATGAACTAAAACAA
66 ATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC-AAATAAACTTATATGAACAAAAACAA
* * * * * * *
35642 TTATTTTGTGATAGAACAAAA-GTTAAAACAATTTGAAATAAATAATTGTTCAAATAG-TATATA
130 TTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATA-A
** * * * *
35705 -TATTTGAACTGGTTCAGTAAAAAAATTTATTTTTTAAA--TCT-CTTATTAATTCTTGAAATAT
194 CTATTTGAACTTATTCAGTAAATAGATTTA-TTTTTAAATTTTTACTTATTAATTTTTGAAATAT
* * * * * * *
35766 TAATAAATTAGTATTATTTTATTTTGAATAAACTTGTAT-ACTGAAAAACAAATGTTTTATGACA
258 TAATAAATTAATATTA-TTTATTTCGAATAAGCTTGTATGAAT-CAAAACAATTATTTTATGACA
* * * * * *
35830 AAACACAAGGTAATAACGATTTGAAATAGATAGTTCTTC
321 AAACA-AAAGTCATAACAATTTGAAATAAATAATTATTC
* * * ** * *
35869 AAATGGCCATAATTATTCAAACTGATT---TAA-CAAATTGATTTATTTTTTAAATATCTTACTT
1 AAATAGTCATAACTATTTGAACTTATTCGGTAATC-AA---ATTTATTTTTTAAATCTCTTACTT
* * * * *** * *
35930 ATTAATTTCTGAAATATTAATGAAGTAGTATTATTTTATTTTGGATAAA-TGTTTATGAACTAAA
62 ATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACT-TATATGAACAAAA
* * *
35994 ATAATTATTTTATGACAAAACAAAAGGTCATAAAGATTTTAAATAGATAATTGTTCAAATAGTTA
126 ACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTA
* * * * * * *
36059 TAATTATTTGAACTTGTTCGGTAAATAAATTTATCTTTGCAAATCTCTTGCTTATTAATTTTTTG
191 TAACTATTTGAACTTATTCAGTAAATAGATTTAT-TTT-TAAAT-TTTTACTTATTAA-TTTTTG
* * * * *
36124 -AATGTTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTAT-AAACTAGAAGAATTATTAT
252 AAATATTAATAAATTAATATTA-TTTATTTCGAATAAGCTTGTATGAATC-AAAACAATTATTTT
* * * * * *
36187 ATGGCTAAATAAAAGATCAAAACAATTTTATGAGATAGATAATTATTC
315 ATGACAAAACAAAAG-TCATAACAA--TT-TGAAATAAATAATTATTC
* * ** * * *
36235 TAATAATTTTAACCATTTGAACTGATTCAGTAAAT-AAATTTATTTTTTAAATCTCTTACTTATT
1 AAATAGTCATAACTATTTGAACTTATTCGGT-AATCAAATTTATTTTTTAAATCTCTTACTTATT
** * * * **
36299 AATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCAAATAAACTTATACAAAC-AAAACAA
65 AATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAACAA
* ** * * * * *
36363 TTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGAAGTAGATAATCGTTCATAGAGTCT-TAA
130 TTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGT-TATAA
* ** * * ** * **
36427 CTATTTGAACTGATTCAACAATTAGATTTATATTTTAATTTTTCTGGTTATTAAGTTTCAAAATA
194 CTATTTGAACTTATTCAGTAAATAGATTTAT-TTTTAAATTTT-TACTTATTAATTTTTGAAATA
* * * ** * * * *
36492 TTATTAAATTAGTATTATTT-TATTCTAAATAAAATAGTATGAAT-AGAACCAATTGTTTGATGA
257 TTAATAAATTAATATTATTTAT-TTC-GAATAAGCTTGTATGAATCA-AAACAATTATTTTATGA
** * * *
36555 TGAAATAAAAGGTTATAACAATTTGAAATAAATAATTATTG
319 CAAAACAAAA-GTCATAACAATTTGAAATAAATAATTATTC
* * ** * * **
36596 AAATAGTCAAAACTATTTGAAATGGTTTGGTAAGT-AGATTT-TCTTTTTAAATCTCTTACAAAT
1 AAATAGTCATAACTATTTGAACTTATTCGGTAA-TCAAATTTAT-TTTTTAAATCTCTTACTTAT
* * ** * * * * *
36659 TTATTTTCT-AAATATTAATAAAACAATATTATTTTGTTTCAAACAAACTTATATTAGCAAAAAC
64 TAATTTT-TGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAAC
*
36723 AATTGTTTTATGACAAAACAAA
128 AATTATTTTATGACAAAACAAA
36745 TCTTTAAATA
Statistics
Matches: 2605, Mismatches: 548, Indels: 359
0.74 0.16 0.10
Matches are distributed among these distances:
325 1 0.00
326 1 0.00
327 68 0.03
328 66 0.03
329 5 0.00
330 2 0.00
331 3 0.00
332 3 0.00
333 7 0.00
334 1 0.00
335 2 0.00
336 3 0.00
337 1 0.00
338 2 0.00
339 2 0.00
340 67 0.03
341 102 0.04
342 114 0.04
343 62 0.02
344 18 0.01
345 10 0.00
346 87 0.03
347 1 0.00
349 2 0.00
350 4 0.00
351 9 0.00
352 2 0.00
353 6 0.00
354 123 0.05
355 11 0.00
356 253 0.10
357 256 0.10
358 184 0.07
359 164 0.06
360 320 0.12
361 255 0.10
362 38 0.01
363 84 0.03
364 70 0.03
365 89 0.03
366 101 0.04
367 1 0.00
369 3 0.00
370 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (358 bp):
AAATAGTCATAACTATTTGAACTTATTCGGTAATCAAATTTATTTTTTAAATCTCTTACTTATTA
ATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAACAAT
TATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTTATAACT
ATTTGAACTTATTCAGTAAATAGATTTATTTTTAAATTTTTACTTATTAATTTTTGAAATATTAA
TAAATTAATATTATTTATTTCGAATAAGCTTGTATGAATCAAAACAATTATTTTATGACAAAACA
AAAGTCATAACAATTTGAAATAAATAATTATTC
Found at i:34740 original size:163 final size:168
Alignment explanation
Indices: 33113--36616 Score: 862
Period size: 180 Copynumber: 19.8 Consensus size: 168
33103 ATTTTCTTAC
* * * *** *
33113 TAATTTTTGGAATATGAATGAACTAATATTATTTTATT-TCAAATATGGTTGAATGAACAGAAAC
1 TAATTTTT-GAATAT-AATAAATTAGTATTATTTTATTCT-AAATAAATTTGTATGAACAGAAAC
** * * * *
33177 AATTGGTTTATAACAAAACAAAATGTCATAACTATTTGAAATAGATAATTGTTCAAATAGTTATA
63 AATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCATA
* ** * * *
33242 ACTATTTGAACATGTTCAGAAAATAGATTTATTTTTAAAATTTTTA-TTT
127 ACTATTTGAACTTGTT------ATAGATAAATTTAT-AAA-TCTTACTAT
* * **
33291 GTAAATTTTTTGAAAATTAATAAATTTA-TATTATTTTATT-TGGAATAAGCTTGTATGAACAGA
1 -T-AA-TTTTTGAATA-TAATAAA-TTAGTATTATTTTATTCT-AAATAAATTTGTATGAACAGA
* ** ** * * *
33354 AGCAATTATTTTACAACAAAACAAAATGTCATAATGATTTGAACTAGAAAATTGTTCAAATAGTC
60 AACAATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAATAGTTCAAATAGTC
* * * *
33419 A-AACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAATCCCTTATTCAT
124 ATAACTATTTGAACTTGTT--ATAGATA-A---A-TTTATAAAT--CTTACT-AT
** * ** *
33473 TAATTTTTGGAATATTAATAAATTAGTATTATTTTATT-TCAAATAAACCTATATGAATTGATAC
1 TAATTTTT-GAATA-TAATAAATTAGTATTATTTTATTCT-AAATAAATTTGTATGAACAGAAAC
* ** * *
33537 AATTGTTTTATGATGAAACAAAAGGTCATAACGATTTGAAATAGATAATTA-TTCAAATAGTTAT
63 AATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAA-TAGTTCAAATAGTCAT
* * * * * * * *
33601 GACTGTTTGAACTTATTCAGTAAACATATTTATTTTTAAAATTTTTTAATTAT
126 AACTATTTGAACTTGTT-A-T--AGATA--AATTTAT-AAA--TCTT-ACTAT
* * * * * ** *
33654 TAATTGTTGAAATATTAATAAATTAATATTAGTTTAAATC-GAATAAGCTTGTATGAA-TGAAAA
1 TAATTTTTG-AATA-TAATAAATTAGTATTA-TTTTATTCTAAATAAATTTGTATGAACAG-AAA
* * * * *
33717 TAATTGTTTTATGACAAAA-AAAAGTCATAACAATTTGACATAAACAACTA-TTCAAATAGTCAT
62 CAATTATTTTATGACAAAACAAAAGTCATAACAATTTGAAATAGATAA-TAGTTCAAATAGTCAT
* * * * *
33780 AACGATTAGAACTTATT-TGGTAATCAAAGTTATTTTTTAAATCTTTTACTTAT
126 AACTATTTGAACTTGTTATAG--AT--AA---A-TTTATAAATC--TTAC-TAT
* ** * * * *
33833 TAATTGTCTGAATATTAATAAATTTTTATTATTTTAATT-GAAATAAACTTGTATGAATAGAAAA
1 TAATT-TTTGAATA-TAATAAATTAGTATTATTTT-ATTCTAAATAAATTTGTATGAACAGAAAC
* * * * * * * *
33897 AATTATTTTATGCCAAAACAAAAAGGTTATAGCGATTTGATATAGGTAATTGTTGAAATAGTCAT
63 AATTATTTTATGACAAAAC-AAAA-GTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCAT
* * *
33962 AACTATTTGAACTTATTCGATAAATAGATTCAGTTTTTAAATC-T-CTTAT
126 AACTATTTGAACTTGTT--ATAGATA-A---A-TTTATAAATCTTAC-TAT
* ** * ** * ** *
34011 TAATTTTTGGAATATTACTAAATTAAAATTATATTATTCCCAGTAAGCTTGTATGAACAGAAATA
1 TAATTTTT-GAATA-TAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAACA
* * * * * *
34076 ATTTTTTTGTGACAAAATAAAATGTTATAACAATTT-AAATAAATAATTA-TTCAAACAGTCATA
64 ATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAA-TAGTTCAAATAGTCATA
* * * * * *
34139 ACTATTTGCACTGGTCA-AGCCAACCAATTCATTTTTTAAATCCATTACACAT
127 ACTATTTGAACTTGTTATAG---A-TAA---A-TTTATAAAT-C-TTAC-TAT
* * * * *
34191 TAATTTTTAGAATATTAATAAATTAGCATTATTTTATTCTAAATAAGA-CTATATCAATAGAAAC
1 TAATTTTT-GAATA-TAATAAATTAGTATTATTTTATTCTAAATAA-ATTTGTATGAACAGAAAC
* * ** * * *
34255 AATTATTTTATGATAAAACAAATGGTCATAATGATTTGAAAT-GAATAATTGTTCAAATTGTTAT
63 AATTATTTTATGACAAAACAAA-AGTCATAACAATTTGAAATAG-ATAATAGTTCAAATAGTCAT
* * * ** *
34319 AACTAATTGAACTAGTCTGGTAAACAGATTTATTTTTCAAATC-T-CTTAT
126 AACTATTTGAAC---T-T-GT-TATAGATAAATTTAT-AAATCTTAC-TAT
* ** * * * * * * *
34368 TGATTTTCAAAATATTAATCAATTAATATTATTATATGCTAAACAAACTTATATGAACA-AAACA
1 TAATTTT-TGAATA-TAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAACA
* * * ** * * * *
34432 TTTGTTTTACGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTA-TTCATATATTCAAA
64 ATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAA-TAGTTCAAATAGTCATA
* * * * * *
34496 ACTATTTAAAACTAGATCGATAAATAGATTTAGTTTTTAAATAC-CA-TAT
127 ACTATTT-GAACT---T-G-T-TATAGA-TAAATTTATAAAT-CTTACTAT
* * *
34545 TAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGAACAAAAACA
1 TAATTTTTG-AATA-TAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAACA
* *
34610 ATTATTTTATGACAAAACAAAATGTCATAACAATTTGAAACAGATAATAGTTCAAATAGACATAA
64 ATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCATAA
*
34675 CTATTTGAACTTGTT-TAG-TAAATTT-TCAA-C-T-C-AT
128 CTATTTGAACTTGTTATAGATAAATTTATAAATCTTACTAT
*
34709 TAATTTTAT-AATATCAATAAATTAGTATTATTTTATTCTAAATAAAATTT-TATGAATAGAAAC
1 TAATTTT-TGAATAT-AATAAATTAGTATTATTTTATTCTAAAT-AAATTTGTATGAACAGAAAC
* * * *
34772 AATTATTTTATGACCAAATAAAAGATCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATA
63 AATTATTTTATGACAAAACAAAAG-TCATAACAATTTGAAATAGATAATAGTTCAAATAGTCATA
* *
34837 ACTATTTGAACTCACTTGTTAAATAGATTTATTTTATAAATCTTTTACTTAT
127 ACTATTTG-A---ACTTGTT--ATAGA-TAAATTTATAAATC--TTAC-TAT
* * *
34889 TAATTTTTGGAATA-AATAAATTAATATTATTTTATTCCAACTAAGA-TTGTATGAACAGAAACA
1 TAATTTTT-GAATATAATAAATTAGTATTATTTTATTCTAAATAA-ATTTGTATGAACAGAAACA
* * *
34952 ATTAGTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTA-TTCAAATAGTTATA
64 ATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAA-TAGTTCAAATAGTCATA
* * * * * *
35016 ACTATTTGAACATT-TTCAGAAAACAAATTTATTTTTAAAATTTTTGCTTTT
127 ACTATTTGAAC-TTGTT-A-TAGATAAATTTA----T-AAA-TCTTAC-TAT
* * ** * * *
35067 TAATTTCTAGAATATTAATAAATTTA-TATTATTTTATTCGAAATAAGCTTGCATGATCAGAACC
1 TAATTT-TTGAATA-TAATAAA-TTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAAC
* *** * * * *
35131 AATTATTTTATAACAAAACAAAAAGGTCATAATGTTTTGAAATAGATAATTGTTTAGATAATCAT
63 AATTATTTTATGACAAAAC-AAAA-GTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCAT
** * * ** * * * *
35196 AAC-A--AAAAATTCTT-T-TTTTAA-TTCTCATTC-T-C-AT
126 AACTATTTGAACTTGTTATAGATAAATTTATAAATCTTACTAT
* ** * *
35230 TTATTCTCGGAATATTAATAAATTAGTATTATTTTACTTC-AAATAAGTTTATATGAACTA-AAA
1 TAATT-TTTGAATA-TAATAAATTAGTATTATTTTA-TTCTAAATAAATTTGTATGAAC-AGAAA
** * * * * ** * *
35293 TGATTGTTTTATTACAAAAGAAATGGTCATAATGATTTGAAATAG-T--TA--T-AATTA-T-TT
62 CAATTATTTTATGACAAAACAAA-AGTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCAT
* * * *
35350 GAACTAGTTTG-----GTAAATAGAATTATTTTCTAAATCTCTTACTTAT
126 -AACTA-TTTGAACTTGT-TATAG-ATAAATTTATAAA--TCTTAC-TAT
* * * * ** * * *
35395 AAATTTTTGAAATATTAATAAATTAGTTTTATTCT-TTCTTGAATAACCTTGTATGAGCTGAAAT
1 TAATTTTTG-AATA-TAATAAATTAGTATTATTTTATTC-TAAATAAATTTGTATGAACAGAAAC
* * * *
35459 AA-TATTTTTATGACAAAACAAAAGCTCATAACAATTTGAAATAAATCATTA-TTCATATAGTCT
63 AATTA-TTTTATGACAAAACAAAAG-TCATAACAATTTGAAATAGAT-AATAGTTCAAATAGTCA
* * * * * * *
35522 TAACTATTTCAACTTATTCGGCAAACAGATTTATTTTTTAAATCTCTTAGTTAT
125 TAACTATTTGAACTTGTT------ATAGA-TAAATTTATAAA--TCTTA-CTAT
* * * * **
35576 TAATTTTTAGAATTTTACTAAATTAGTATTATTTTAATCTGAATAAGCTTGTATGAACTA-AAAC
1 TAATTTTT-GAA-TATAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAAC-AGAAAC
* * * * * * *
35640 AATTATTTTGTGATAGAACAAAAGTTAAAACAATTTGAAATAAATAATTGTTCAAATAGT-ATAT
63 AATTATTTTATGACAAAACAAAAGTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCATA-
* * *
35704 A-TATTTGAACTGGTTCAGTAAAAAAATTTATTTTTTAAATC-T-CTTAT
127 ACTATTTGAACTTGTT-A-TAGATAAATTTA-----TAAATCTTAC-TAT
* * * * *
35751 TAATTCTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAACTTGTAT--ACTGAAAAA
1 TAATTTTTG-AATA-TAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAAC--AGAAA
* * * * * * ** * *
35814 CAAATGTTTTATGACAAAACACAAGGTAATAACGATTTGAAATAGATAGTTCTTCAAATGGCCAT
62 CAATTATTTTATGACAAAACA-AAAGTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCAT
* ** * * * *
35879 AATTATTCAAAC-TGATTTAACAAATTGATTTATTTTTTAAATATCTTACTTAT
126 AACTATTTGAACTTG--TT-----ATAGA-TAAATTTAT-AA-ATCTTAC-TAT
* * * * **
35932 TAATTTCTGAAATATTAATGAAGTAGTATTATTTTATTTTGGATAAATGTT-TATGAACTA-AAA
1 TAATTTTTG-AATA-TAATAAATTAGTATTATTTTATTCTAAATAAAT-TTGTATGAAC-AGAAA
* * * *
35995 TAATTATTTTATGACAAAACAAAAGGTCATAA-AGATTTTAAATAGATAATTGTTCAAATAGTTA
62 CAATTATTTTATGACAAAACAAAA-GTCATAACA-ATTTGAAATAGATAATAGTTCAAATAGTCA
* * * *
36059 TAATTATTTGAACTTGTTCGGTAAATAAATTTATCTTTGCAAATCTCTTGCTTAT
125 TAACTATTTGAACTTGTT--ATAGATAAATTTA----T--AAA--TCTTAC-TAT
* * * ** *
36114 TAATTTTTTGAATGTTAATAAATTAATATTATTTTATT-TCGAATAAGCTTGTATAAACTAG-AA
1 TAA-TTTTTGAAT-ATAATAAATTAGTATTATTTTATTCT-AAATAAATTTGTATGAAC-AGAAA
* * * * * * * * *
36177 GAATTATTATATGGCTAAATAAAAGATCAAAACAATTTTATGAGATAGATAATTA-TTCTAATAA
62 CAATTATTTTATGACAAAACAAAAG-TCATAACAA--TT-TGAAATAGATAA-TAGTTCAAATAG
** * *
36241 TTTTAACCATTTGAAC-TGATTCAGTAAATAAATTTATTTTTTAAATCTCTTACTTAT
122 TCATAACTATTTGAACTTG-TT-A-TAGATAAATTTA-----TAAA--TCTTAC-TAT
* * * * * * **
36298 TAATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCAAATAAACTTATACAAACA-AAACA
1 TAATTTTT-GAATA-TAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAACA
* ** * * * * * * *
36362 ATTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGAAGTAGATAATCGTTCATAGAGTCTTAA
64 ATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCATAA
* * * *
36427 CTATTTGAAC-TGATTCA-ACAATTAGATTTATATTTTAATTTTTCTGGTTAT
128 CTATTTGAACTTG-TT-ATA-GA-TAAATTTATA----AATCTTAC----TAT
*** * * * * *
36478 TAAGTTTCAAAATATTATTAAATTAGTATTATTTTATTCTAAATAAAATAGTATGAATAGAACCA
1 TAA-TTTTTGAATA-TAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAACA
* * ** * * * * *
36543 ATTGTTTGATGATGAAATAAAAGGTTATAACAATTTGAAATAAATAATTA-TTGAAATAGTCAAA
64 ATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAA-TAGTTCAAATAGTCATA
36607 ACTATTTGAA
127 ACTATTTGAA
36617 ATGGTTTGGT
Statistics
Matches: 2529, Mismatches: 536, Indels: 518
0.71 0.15 0.14
Matches are distributed among these distances:
154 2 0.00
155 4 0.00
156 5 0.00
157 1 0.00
158 3 0.00
159 6 0.00
161 3 0.00
162 28 0.01
163 170 0.07
164 24 0.01
165 80 0.03
166 2 0.00
167 11 0.00
168 6 0.00
169 3 0.00
170 7 0.00
171 6 0.00
172 12 0.00
173 11 0.00
174 20 0.01
175 81 0.03
176 153 0.06
177 163 0.06
178 174 0.07
179 278 0.11
180 504 0.20
181 451 0.18
182 158 0.06
183 47 0.02
184 60 0.02
185 46 0.02
186 7 0.00
187 1 0.00
188 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (168 bp):
TAATTTTTGAATATAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAGAAACAAT
TATTTTATGACAAAACAAAAGTCATAACAATTTGAAATAGATAATAGTTCAAATAGTCATAACTA
TTTGAACTTGTTATAGATAAATTTATAAATCTTACTAT
Found at i:35343 original size:19 final size:19
Alignment explanation
Indices: 35321--35358 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
35311 AGAAATGGTC
35321 ATAATGATTTGAAATAGTT
1 ATAATGATTTGAAATAGTT
* *
35340 ATAATTATTTGAACTAGTT
1 ATAATGATTTGAAATAGTT
35359 TGGTAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (19 bp):
ATAATGATTTGAAATAGTT
Found at i:35961 original size:181 final size:179
Alignment explanation
Indices: 35371--36601 Score: 675
Period size: 181 Copynumber: 6.8 Consensus size: 179
35361 GTAAATAGAA
* * * * * *
35371 TTATTTTCTAAATCTCTTACTTATAAATTTTTGAAATATTAATAAATTAGTTTTATTCTT-TCTT
1 TTATTTTTTAAATATCTTACTTATTAATTTCTGAAATATTAATAAATTAGTATTATT-TTATTTT
* * * * *
35435 GAATAACCTTGTATGAGCTGAAATAATAT-TTTTATGACAAAACAAAAGCTCATAACAATTTGAA
65 GAATAAACTTGTATGA-CTGAAAAAAAATATTTTATGACAAAACAAAAGGTAATAACAATTTGAA
* * * * * * * *
35499 ATAAATCATTATTCATATAGTCTTAACTATTTCAACTTATTCGGCAAACAGAT
129 ATAAATAATTGTTCAAATAG-CATAATTA-TTCAACTGATTCAGCAAAAAGAT
* * * * * * *
35552 TTATTTTTTAAATCTCTTAGTTATTAATTT-TTAGAATTTTACTAAATTAGTATTATTTTAATCT
1 TTATTTTTTAAATATCTTACTTATTAATTTCTGA-AATATTAATAAATTAGTATTATTTTATTTT
* * * * * * *
35616 GAATAAGCTTGTATGAACT-AAAACAATTATTTTGTGATAGAACAAAAGTTAA-AACAATTTGAA
65 GAATAAACTTGTATG-ACTGAAAAAAAATATTTTATGACAAAACAAAAGGTAATAACAATTTGAA
* * * * *
35679 ATAAATAATTGTTCAAATAGTAT-ATATATTTGAACTGGTTCAGTAAAAAAAT
129 ATAAATAATTGTTCAAATAGCATAAT-TA-TTCAACTGATTCAGCAAAAAGAT
35731 TTATTTTTT-AA-ATC-T-CTTATTAA-TTCTTGAAATATTAATAAATTAGTATTATTTTATTTT
1 TTATTTTTTAAATATCTTACTTATTAATTTC-TGAAATATTAATAAATTAGTATTATTTTATTTT
* * *
35791 GAATAAACTTGTAT-ACTGAAAAACAAATGTTTTATGACAAAACACAAGGTAATAACGATTTGAA
65 GAATAAACTTGTATGACTGAAAAA-AAATATTTTATGACAAAACAAAAGGTAATAACAATTTGAA
* * * * * * **
35855 ATAGATAGTTCTTCAAATGGCCATAATTATTCAAACTGATTTAACAAATTGAT
129 ATAAATAATTGTTCAAATAG-CATAATTATTC-AACTGATTCAGCAAAAAGAT
* *
35908 TTATTTTTTAAATATCTTACTTATTAATTTCTGAAATATTAATGAAGTAGTATTATTTTATTTTG
1 TTATTTTTTAAATATCTTACTTATTAATTTCTGAAATATTAATAAATTAGTATTATTTTATTTTG
* * * * * *
35973 GATAAA-TGTTTATGAACT-AAAATAATTATTTTATGACAAAACAAAAGGTCATAA-AGATTTTA
66 AATAAACT-TGTATG-ACTGAAAAAAAATATTTTATGACAAAACAAAAGGTAATAACA-ATTTGA
* * * * *
36035 AATAGATAATTGTTCAAATAGTTATAATTATTTGAACTTG-TTCGGTAAATAA-AT
128 AATAAATAATTGTTCAAATAG-CATAATTA-TTCAAC-TGATTCAGCAAA-AAGAT
** * * * * *
36089 TTATCTTTGCAAATCTCTTGCTTATTAATTTTTTG-AATGTTAATAAATTAATATTATTTTATTT
1 TTAT-TTTTTAAATATCTTACTTATTAA-TTTCTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * * * * * * *
36153 CGAATAAGCTTGTATAAACT-AGAAGAATTATTATATGGCTAAATAAAAGATCAA-AACAATTTT
64 TGAATAAACTTGTAT-GACTGAAAAAAAATATTTTATGACAAAACAAAAGGT-AATAACAA--TT
* * * * *** ** * *
36216 ATGAGATAGATAATTATTCTAATAATTTTAACCATTTGAACTGATTCAGTAAATAA-AT
125 -TGAAATAAATAATTGTTCAAAT-AGCATAATTA-TTCAACTGATTCAGCAAA-AAGAT
* * * * * ***
36274 TTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCA
1 TTATTTTTTAAATATCTTACTTATTAATTTCTGAAATATTAATAAATTAGTATTATTTTATTTTG
* * ** * * *
36339 AATAAAC-T-TAT-AC-AAACAAAACAATTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGA
66 AATAAACTTGTATGACTGAA-AAAA-AA-TATTTTATGACAAAACAAAAGGTAATAACAATTTGA
* * * * * * * * * **
36400 AGTAGATAATCGTTCATAGAGTCTTAACTATTTGAACTGATTCAACAATTAGAT
128 AATAAATAATTGTTCAAATAG-CATAATTA-TTCAACTGATTCAGCAAAAAGAT
* * * ** * * *
36454 TTATATTTT-AATTTTTCTGGTTATTAAGTTTC-AAAATATTATTAAATTAGTATTATTTTATTC
1 TTATTTTTTAAATATCT-TACTTATTAA-TTTCTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * ** ** * *
36517 TAAATAAAATAGTATGAAT-AGAACCAAT-TGTTTGATGATGAAATAAAAGGTTATAACAATTTG
64 TGAATAAACTTGTATGACTGAAAAAAAATAT-TTT-ATGACAAAACAAAAGGTAATAACAATTTG
* *
36580 AAATAAATAATTATTGAAATAG
127 AAATAAATAATTGTTCAAATAG
36602 TCAAAACTAT
Statistics
Matches: 818, Mismatches: 180, Indels: 104
0.74 0.16 0.09
Matches are distributed among these distances:
173 3 0.00
174 6 0.01
175 67 0.08
176 31 0.04
177 28 0.03
178 7 0.01
179 40 0.05
180 138 0.17
181 251 0.31
182 105 0.13
183 39 0.05
184 55 0.07
185 47 0.06
186 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
TTATTTTTTAAATATCTTACTTATTAATTTCTGAAATATTAATAAATTAGTATTATTTTATTTTG
AATAAACTTGTATGACTGAAAAAAAATATTTTATGACAAAACAAAAGGTAATAACAATTTGAAAT
AAATAATTGTTCAAATAGCATAATTATTCAACTGATTCAGCAAAAAGAT
Found at i:36602 original size:546 final size:538
Alignment explanation
Indices: 35371--36698 Score: 1253
Period size: 546 Copynumber: 2.5 Consensus size: 538
35361 GTAAATAGAA
* * * * * * *
35371 TTAT-TTTCTAAATCTCTTACTTATAAATTTTTGAAATATTAATAAATTAGTTTTATTCT-TTCT
1 TTATATTT-TAAATATCTTACTTATTAATTTCTAAAATATTAATAAAGTAGTATTATTTTATTC-
* * * * * * *
35434 TGAATAACCT-TGTATGAGCTGAAATAA-TATTTTTATGACAAAACAAAAGCTCATAACAATTTG
64 TAAATAA-ATGT-TATGAACTAAAACAATTA-TTTGATGACAAAACAAAAGGTCATAACAATTTG
* * * * * *
35497 AAATAAATCATTATTCATATAGTCT-TAACTATTTCAACTTATTCGGCAAACAGATTTAT-TTTT
126 AAATAAATAATTATTCAAATAGT-TATAACTATTTGAACTTGTTCGGTAAATAGATTTATCTTTT
* * * * *
35560 TAAATCTCTTAG-TTATTAATTTTTAGAATTTTACTAAATTAGTATTATTTTA-ATCTGAATAAG
190 TAAATCTCTT-GCTTATTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTCTGAATAAG
* *
35623 CTTGTATGAACTAAAACAATTATTTTGTGATAGAACAAAAGTTAAAACAATTTGAAATAAATAAT
254 CTTGTATAAACTAAAACAATTATTTTGTGATAGAACAAAAGTCAAAACAATTTGAAATAAATAAT
* * *
35688 TGTTCAAATAGTATATATATTTGAACTGGTTCAGTAAAAAAATTTATTTTTTAAATCTCTTATTA
319 TATTCAAATAGTATATACATTTGAACTGATTCAGTAAAAAAATTTATTTTTTAAATCTCTTATTA
* * *** **
35753 ATTCTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAACTTGTATACTGAAAAACAAA
384 ATTCTTAAAATATTAATAAATTAGTATTATTTTAATCCAAATAAACTTGTATACAAAAAAACAAA
* * *
35818 TGTTTTATGACAAAACACAAGGTAATAACGATTTGAAATAGATAGTTCTTCAAATGGCCATAATT
449 TGTTTTATGACAAAACAAAAGGTAATAACGATTTGAAATAGATAGATCTTCAAATGGCCATAACT
*
35883 ATTCAAACTGATTTAACAAATTGAT
514 ATTCAAACTGATTCAACAAATTGAT
* * * * *
35908 TTATTTTTTAAATATCTTACTTATTAATTTCTGAAATATTAATGAAGTAGTATTATTTTATTTTG
1 TTATATTTTAAATATCTTACTTATTAATTTCTAAAATATTAATAAAGTAGTATTATTTTATTCTA
* * * *
35973 GATAAATGTTTATGAACTAAAATAATTATTTTATGACAAAACAAAAGGTCATAA-AGATTTTAAA
66 AATAAATG-TTATGAACTAAAACAATTATTTGATGACAAAACAAAAGGTCATAACA-ATTTGAAA
* * * * **
36037 TAGATAATTGTTCAAATAGTTATAATTATTTGAACTTGTTCGGTAAATAAATTTATCTTTGCAAA
129 TAAATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGGTAAATAGATTTATCTTTTTAAA
*
36102 TCTCTTGCTTATTAATTTTTTGAATGTTAATAAATTAATATTATTTTATTTC-GAATAAGCTTGT
194 TCTCTTGCTTATTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTCTGAATAAGCTTGT
* * * * * *
36166 ATAAACTAGAAGAATTATTATATG-GCTA-AATAAAAGATCAAAACAATTTTATGAGATAGATAA
259 ATAAACTAAAACAATTATT-T-TGTGATAGAACAAAAG-TCAAAACAA--TT-TGAAATAAATAA
* * * *
36229 TTATTCTAATAAT-TTTAACCATTTGAACTGATTCAGTAAATAAATTTATTTTTTAAATCTCTTA
318 TTATTCAAATAGTATAT-A-CATTTGAACTGATTCAGTAAAAAAATTTATTTTTTAAA--TC-T-
* *
36293 CTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCAAATAAAC-T-TATACAAAC
377 CTTATTAATTCTTAAAATATTAATAAATTAGTATTATTTTAATCCAAATAAACTTGTATACAAA-
* ** * * * *
36356 AAAACAATTGTTTTATGTTAAAAGAAAAGGTCATAACGATTTGAAGTAGATA-ATCGTTCATA-G
441 AAAACAAATGTTTTATGACAAAACAAAAGGTAATAACGATTTGAAATAGATAGATC-TTCAAATG
* * **
36419 AGTCTTAACTATTTGAACTGATTCAAC-AATTAGAT
505 -GCCATAACTATTCAAACTGATTCAACAAATT-GAT
* * ** * *
36454 TTATATTTT-AATTTTTCTGGTTATTAAGTTTC-AAAATATTATTAAATTAGTATTATTTTATTC
1 TTATATTTTAAATATCT-TACTTATTAA-TTTCTAAAATATTAATAAAGTAGTATTATTTTATTC
* * ** * *
36517 TAAATAAAATAG-TATGAA-TAGAACCAATTGTTTGATGATGAAATAAAAGGTTATAACAATTTG
64 TAAAT-AAAT-GTTATGAACTA-AAACAATTATTTGATGACAAAACAAAAGGTCATAACAATTTG
* * * * * * *
36580 AAATAAATAATTATTGAAATAGTCAAAACTATTTGAAATGGTTTGGTAAGTAGATTT-TCTTTTT
126 AAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGGTAAATAGATTTATCTTTTT
* ** * * * ** *
36644 AAATCTCTTACAAATTTATTTTCTAAATATTAATAAAACAATATTATTTTGTTTC
191 AAATCTCTTGCTTATTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTC
36699 AAACAAACTT
Statistics
Matches: 645, Mismatches: 114, Indels: 56
0.79 0.14 0.07
Matches are distributed among these distances:
536 3 0.00
537 144 0.22
538 91 0.14
539 14 0.02
540 2 0.00
541 4 0.01
542 21 0.03
543 35 0.05
545 72 0.11
546 203 0.31
547 55 0.09
548 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (538 bp):
TTATATTTTAAATATCTTACTTATTAATTTCTAAAATATTAATAAAGTAGTATTATTTTATTCTA
AATAAATGTTATGAACTAAAACAATTATTTGATGACAAAACAAAAGGTCATAACAATTTGAAATA
AATAATTATTCAAATAGTTATAACTATTTGAACTTGTTCGGTAAATAGATTTATCTTTTTAAATC
TCTTGCTTATTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTCTGAATAAGCTTGTAT
AAACTAAAACAATTATTTTGTGATAGAACAAAAGTCAAAACAATTTGAAATAAATAATTATTCAA
ATAGTATATACATTTGAACTGATTCAGTAAAAAAATTTATTTTTTAAATCTCTTATTAATTCTTA
AAATATTAATAAATTAGTATTATTTTAATCCAAATAAACTTGTATACAAAAAAACAAATGTTTTA
TGACAAAACAAAAGGTAATAACGATTTGAAATAGATAGATCTTCAAATGGCCATAACTATTCAAA
CTGATTCAACAAATTGAT
Found at i:37540 original size:180 final size:180
Alignment explanation
Indices: 37009--38244 Score: 910
Period size: 180 Copynumber: 6.9 Consensus size: 180
36999 AATTTAGTAT
* * * * * * *
37009 GATTTGAAATAAATAAATGTTCAAATTGTTATAACTCA-TTGAACT-AGTATGGTAAATAGATTT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACT-ATTTGAACTGA-TTTGATAAATATATTT
* * * *
37072 ATTTATTAAA-ATCT-CTT-TTAATTTTTGAAATATTAATAAATTAATATTATTTTATT-TCGAA
64 ATTTTTTAAATCTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCT-GAA
* * * ** * * *
37133 CAAACTTATATGAACAAAAACATTTTGTTTTACGACAAAACAAAAAGTCATAAC
128 TAAGCTTGTATGATGAAAAACA-ATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * * * * *
37187 AATTTGAAATAGATAATTAG-TCATATAGCCTTAACTATTTGAATTG-GTTCAGTAAACAAATTT
1 GATTTGAAATAGATAATT-GTTCAAATAGTCATAACTATTTGAACTGATTTGA-TAAATATATTT
* * * * *
37250 ATTTTTTTTAAAATCTATCAGTTATTAA-ATTTCATAATATTACTAGATTAGTATTATTTTATTT
64 A--TTTTTT-AAATCTCT-ACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTA-TT
* * ** * *
37314 TTGAATAAGCTTGTATGAAGTTAAATAATTGTTTTATGACAAAACAAAAGGTTATAAC
123 CTGAATAAGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
*
37372 GA-TTGAAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAATATATTTA
1 GATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAATATATTTA
37436 TTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCT-AAT
65 TTTTTTAAATCT-CTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTGAAT
* * * *
37500 AGGCTTGTATGATGAAAAATAATTGTTTTATGACAAAACAAAAGTTCATAAT
129 AAGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * **
37552 GATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAAGTGATTCAATAAACT-TATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAA-TATATTTA
* * * * * *
37616 TGTTTTAAATCTCTAACTTATCAATTTTT-ATAACATTAATAAAGTAATATTATTTTATT-TCAT
65 TTTTTTAAATCTCT-ACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTCTGA-
* * * *
37679 ATAAGCTTTTATGAATTG--AAACAATTGTTTTATGATAAAATATAAGGTCATAAC
127 ATAAGCTTGTATG-A-TGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * *
37733 GATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTG-TTCGGTAAAT-TGATTT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTTGATAAATAT-ATTT
* * * **
37796 -TTTTTTCTAATTTCTTACTTAATAATTTTTTGAATATTAATAAATTAGTATTATTTTATT-TCG
64 ATTTTTT-AAATCTC-TACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCT-G
* * * * *
37859 AATAAGCATGTATGATTG--AAGCAATTATTTTATGACTAAACAAAAGGTCAAAAC
126 AATAAGCTTGTATGA-TGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * * * *
37913 GATTTGAAATAGATAATTGTTCTAATAGTCTTAACTATATAAACTGA-TTCAGCAAACACATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGA-TAAATATATTTA
* * * * * * *
37977 TTTTTTAAATC-CATACTTATTAATGTTT-AGAATATTATTAATTTAGCAATATTTTACTCTAAA
65 TTTTTTAAATCTC-TACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTCTGAA
* * *
38040 TAAGCTTGT-TGAATAGAAATTA-AA-TGTTTCAGGACAAAA-AAAA--TCATAAC
128 TAAGCTTGTATG-AT-GAAA-AACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * *
38090 AATTAGAGATAGATAATTGTTCAAAGAGTCATAACTATTTGAACT-AGTTT-AGTAAAGAGATTT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-TTTGA-TAAATATATTT
* ** *
38153 AGTTTTTAAA--TCT-CTTATTAA-TTTTCAAAATAGAAATAAAATAGTATTATTTTATTCTGAA
64 ATTTTTTAAATCTCTACTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTCTGAA
** *
38214 TAATTTTGTATGAAT-AGAAACAATTGGTTTT
128 TAAGCTTGTATG-ATGAAAAACAATT-GTTTT
38245 GGAACATTAA
Statistics
Matches: 838, Mismatches: 167, Indels: 109
0.75 0.15 0.10
Matches are distributed among these distances:
172 1 0.00
173 7 0.01
174 40 0.05
175 11 0.01
176 2 0.00
177 64 0.08
178 47 0.06
179 61 0.07
180 252 0.30
181 162 0.19
182 45 0.05
183 14 0.02
184 10 0.01
185 98 0.12
186 23 0.03
187 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAATATATTTAT
TTTTTAAATCTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTGAATAA
GCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
Found at i:37759 original size:361 final size:355
Alignment explanation
Indices: 37009--38244 Score: 1117
Period size: 361 Copynumber: 3.4 Consensus size: 355
36999 AATTTAGTAT
* * * * * *
37009 GATTTGAAATAAATAAATGTTCAAATTGTTATAACTCA-TTGAACTAGTATGGTAAATAGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACT-ATTTGAACTAGTTTGATAAATAGATTTA
* * * * *
37073 TTTATTAAAATCTCTT-TTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAA
65 TTT-TTTAAATCTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAG
* ** * * *
37137 CTTATATGAACAAAAACATTTTGTTTTACGACAAAACAAAAAGTCATAACAATTTGAAATAGATA
129 CTTGTATGATGAAAAACA-ATTGTTTTATGACAAAAC-AAAAGTCATAACGATTTGAAATAGATA
* * * *
37202 ATTAG-TCATATAGCCTTAACTATTTGAATTGGTTCAGTAAACAAATTTATTTTTTTTAAAATCT
192 ATT-GTTTAAATAGCCTTAACTATTTGAACTGATTCAGTAAACAAATTTA--TTTTTT-AAATCT
* * * * * * * *
37266 ATCAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTT-TTGAATAAGCTTGTAT
253 CTAACTTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCAT--ATAAGCTTGTAT
*
37330 GAAGTT-AAATAATTGTTTTATGACAAAACAAAAGGTTATAAC
316 GAA-TTGAAATAATTGTTTTATGAC-AAA-AAAAGGTCATAAC
* *
37372 GA-TTGAAAATATATAATTGTTCAAATAGTCATAACTATTTGAACT-GATTTGATAAATATATTT
1 GATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAG-TTTGATAAATAGATTT
*
37435 ATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTA-TTCTAA
64 ATTTTTTAAA--T-CT-CTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAA
* * *
37499 TAGGCTTGTATGATGAAAAATAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAG
125 TAAGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAG-TCATAACGATTTGAAATAG
* * * * * ** *
37564 ATAATTGTTTAAATGGCCATAATTATTTGAAGTGATTCAATAAACTTATTTATGTTTTAAATCTC
189 ATAATTGTTTAAATAGCCTTAACTATTTGAACTGATTCAGTAAACAAATTTATTTTTTAAATCTC
* * * * *
37629 TAACTTATCAATTTTTATAACATTAATAAAGTAATATTATTTTATTTCATATAAGCTTTTATGAA
254 TAACTTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCATATAAGCTTGTATGAA
* *
37694 TTGAAACAATTGTTTTATGATAAAATATAAGGTCATAAC
319 TTGAAATAATTGTTTTATGACAAAA-A-AAGGTCATAAC
* * * * * * * *
37733 GATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTGTTCGGTAAATTGATTTTT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTGATAAATAGATTTAT
* * **
37798 TTTTCTAATTTCTTACTTAATAATTTTTTGAATATTAATAAATTAGTATTATTTTATTTCGAATA
66 TTTT-TAA-ATC-T-CTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
37863 AGCATGTATGATTG--AAGCAATTATTTTATGACTAAACAAAAGGTCAAAACGATTTGAAATAGA
127 AGCTTGTATGA-TGAAAAACAATTGTTTTATGACAAAACAAAA-GTCATAACGATTTGAAATAGA
* * * * *
37926 TAATTGTTCT-AATAGTCTTAACTATATAAACTGATTCAGCAAACACATTTATTTTTTAAATC-C
190 TAATTGTT-TAAATAGCCTTAACTATTTGAACTGATTCAGTAAACAAATTTATTTTTTAAATCTC
* * * * * * * *
37989 -ATACTTATTAATGTTTAGAATATTATTAATTTAGCAATATTTTA-CTCTAAATAAGCTTGT-TG
254 TA-ACTTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTC-ATATAAGCTTGTATG
* * * * *
38051 AATAGAAATTAAATGTTTCAGGACAAAAAAA-ATCATAAC
317 AATTGAAA-TAATTGTTTTATGACAAAAAAAGGTCATAAC
* * * * *
38090 AATTAGAGATAGATAATTGTTCAAAGAGTCATAACTATTTGAACTAGTTT-AGTAAAGAGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTGA-TAAATAGATTTA
* ** *
38154 GTTTTTAAATCTCTTATTAA-TTTTCAAAATAGAAATAAAATAGTATTATTTTA-TTCTGAATAA
65 TTTTTTAAATCTCTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTTC-GAATAA
** *
38217 TTTTGTATGAAT-AGAAACAATTGGTTTT
128 GCTTGTATG-ATGAAAAACAATT-GTTTT
38245 GGAACATTAA
Statistics
Matches: 711, Mismatches: 129, Indels: 74
0.78 0.14 0.08
Matches are distributed among these distances:
352 7 0.01
353 43 0.06
354 9 0.01
355 6 0.01
356 3 0.00
357 61 0.09
358 2 0.00
359 14 0.02
360 64 0.09
361 225 0.32
362 77 0.11
363 60 0.08
364 7 0.01
365 75 0.11
366 23 0.03
367 35 0.05
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (355 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTGATAAATAGATTTAT
TTTTTAAATCTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCT
TGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTCATAACGATTTGAAATAGATAATTG
TTTAAATAGCCTTAACTATTTGAACTGATTCAGTAAACAAATTTATTTTTTAAATCTCTAACTTA
TTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCATATAAGCTTGTATGAATTGAAAT
AATTGTTTTATGACAAAAAAAGGTCATAAC
Found at i:38866 original size:181 final size:179
Alignment explanation
Indices: 38259--39503 Score: 856
Period size: 181 Copynumber: 7.0 Consensus size: 179
38249 CATTAATTTT
* * * * *
38259 TAAATAAATTAATTTTTAAAAT-TTTTACTTATTAAGTT-T-TGGAACATTAATAAATTTA-TAT
1 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTGTCT-TAATATTAATAAA-TTAGTAT
* ** * * * *
38320 TATTTTATTTGAAATAAGCTTGA-ACGAA-TAGAACCAATTATTTTATGATAAAACAAAAAATTA
63 TATTTTA-ATCCAATAAGCTT-ATATGAACT-GAAACAATTATTTTATGACAAAACAAAAAGTTA
* *
38383 TAATG-TTTTGAAATAGATAATTATT-AAGATAGTCATAACTATTTGAACTTGTTCGA
125 TAA-GAATTTGAAATAAATAATTATTCAA-ATAGTCATAACTATTTGAACTTGTT-GA
* * * * *
38439 TAAACAGATTTATTTTTTTAATTCTTTTATTTTTTAATT-T-TTGGAATATTAATAAATTTGTAT
1 TAAATAGATTTA-TTTTTTAAATCTTTTACTTATTAATTGTCTT--AATATTAATAAATTAGTAT
* * * * * * * * *
38502 TATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAACAAAATGTTACA
63 TATTTTA-ATCCAATAAGCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAAAGTTATA
* * * *
38567 ATG-ATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTTGG
127 A-GAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTGA
* * * *
38621 TAAACT-TA-TT-TTTTTAAAATCTTTTACTTATTAATTGT-TGAATTATTAATAAATTAATATT
1 TAAA-TAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAA-TATTAATAAATTAGTATT
* * * * * *
38682 ATTTTAATGCGATAAGCTTGTATGGACGGAAACAATTATTTTATGACAAAACAAAAAAGTCATAA
64 ATTTTAATCCAATAAGCTTATATGAACTGAAACAATTATTTTATGACAAAAC-AAAAAGTTATAA
* * *
38747 GAATTTGAAATAAATAATTATTCAGATAGTCATAACGATTTGAATTTGTTCGA
128 GAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTT-GA
* * * *
38800 TAAATACATTTATTTTTTAAATATTTTACTTATTAATTGTCTTAATGTTAATAAATTTGTATTAT
1 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAAATTAGTATTAT
* * * * * * * *
38865 TTTATTCGAAGTAAGCTTATATGAAC-AAATAAAATCATTATATGACAAACCAAAAGGTTAT-AG
66 TTTAATCCAA-TAAGCTTATATGAACTGAA-ACAATTATTTTATGACAAAACAAAAAGTTATAAG
** * * * * * * * *
38928 CAATTCCAAATCAATAATTGTTCAAATGGCCATAATTATTTAAATTTGTTTA
129 -AATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTGA
* * * * * *
38980 GTAAATAGATTCATTTTTTAAATCTCTTAATTATTAATTTTCATAATATTAATAACA-TGGTATT
1 -TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAA-ATTAGTATT
* * * * *
39044 ATTTTATTTCCAATAACCTTATATGAACTGAAATAAGTT-TTTTATGACAAAACAAAAGGTCATA
64 ATTTTA-ATCCAATAAGCTTATATGAACTGAAACAA-TTATTTTATGACAAAACAAAAAGTTATA
** * * *
39108 ACTATTTGAAATAAATAACTATTTAAATAGTCATGACTA-TTG-A---G--G-
127 AGAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTGA
* * * * **
39153 TAAACATATTTATTTCTAAAAT-TTTTAACTTATTAATTGTCAAAATATTAATAAATTAGTATTA
1 TAAATAGATTTATTTTTTAAATCTTTT-ACTTATTAATTGTCTTAATATTAATAAATTAGTATTA
* * * *
39217 TTTTAATCCAAATAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAGAACAAAATGTTATAA
65 TTTTAATCC-AATAAGCTTATATGAACT-GAAACAATTATTTTATGACAAAACAAAAAGTTATAA
** **
39281 -AGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAACAAGTTTGA
128 GA-ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTGA
* * * *
39334 TAAATGGATTTATTTTTTAAATC----ACTTTTTAGTT-T-TTGAAATATTAATAGATTAGTATT
1 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTT--AATATTAATAAATTAGTATT
* * * * * * * * *
39393 ACTTTATTCCTAATAAACTTATAAGAAC-AAAACCATTTGTTTTATAACAAAACAAAAAGTAATA
64 ATTTTAATCC-AATAAGCTTATATGAACTGAAA-CAATTATTTTATGACAAAACAAAAAGTTATA
** * * * *
39457 ATG-ATTTGAAATATGTAATTGTTCAAATAGTTATAATTATTTAAACT
127 A-GAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACT
39504 GATTAGGTAA
Statistics
Matches: 846, Mismatches: 169, Indels: 103
0.76 0.15 0.09
Matches are distributed among these distances:
171 10 0.01
172 127 0.15
173 3 0.00
174 1 0.00
176 5 0.01
177 114 0.13
178 40 0.05
179 100 0.12
180 19 0.02
181 254 0.30
182 168 0.20
183 5 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAAATTAGTATTAT
TTTAATCCAATAAGCTTATATGAACTGAAACAATTATTTTATGACAAAACAAAAAGTTATAAGAA
TTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTGA
Found at i:39127 original size:17 final size:16
Alignment explanation
Indices: 39105--39136 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
39095 ACAAAAGGTC
39105 ATAACTATTTGAAATAA
1 ATAACTATTT-AAATAA
39122 ATAACTATTTAAATA
1 ATAACTATTTAAATA
39137 GTCATGACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (16 bp):
ATAACTATTTAAATAA
Found at i:39261 original size:172 final size:171
Alignment explanation
Indices: 39006--39320 Score: 404
Period size: 172 Copynumber: 1.8 Consensus size: 171
38996 TTTAAATCTC
* * * *
39006 TTAATTATTAATTTTCATAATATTAATAACATGGTATTATTTTATTTCCAATAACCTTATATGAA
1 TTAATTATTAATTGTCAAAATATTAATAACATAGTATTATTTTATATCCAATAACCTTATATGAA
* ** * *
39071 CTGAAATAAGTTTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAAATAACTATTTAAAT
66 CTGAAACAAGTTTTTTATGACAAAACAAAAGGTCATAAAGATTTGAAATAAATAACTACTCAAAT
*
39136 AGTCATGACTATTGAGGTAAACATATTTATTTCTAAAATTT
131 AGTCATAACTATTGAGGTAAACATATTTATTTCTAAAATTT
* *
39177 TTAACTTATTAATTGTCAAAATATTAATAA-ATTAGTATTATTTTA-ATCCAAATAAGCTTGTAT
1 TTAA-TTATTAATTGTCAAAATATTAATAACA-TAGTATTATTTTATATCC-AATAACCTTATAT
* * * * *
39240 GAA-TAGAAACAA-TTGTTTTATGACAGAACAAAATGTTATAAAGATTTGAAATAAATAATTGCT
63 GAACT-GAAACAAGTT-TTTTATGACAAAACAAAAGGTCATAAAGATTTGAAATAAATAACTACT
39303 CAAATAGTCATAACTATT
126 CAAATAGTCATAACTATT
39321 TGAACAAGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
171 11 0.09
172 111 0.91
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (171 bp):
TTAATTATTAATTGTCAAAATATTAATAACATAGTATTATTTTATATCCAATAACCTTATATGAA
CTGAAACAAGTTTTTTATGACAAAACAAAAGGTCATAAAGATTTGAAATAAATAACTACTCAAAT
AGTCATAACTATTGAGGTAAACATATTTATTTCTAAAATTT
Found at i:39299 original size:353 final size:354
Alignment explanation
Indices: 38354--39492 Score: 907
Period size: 353 Copynumber: 3.2 Consensus size: 354
38344 CGAATAGAAC
* * *** * *
38354 CAATTATTTTATGATAAAACAAAAAA-TTATAATGTTTTGAAATAGATAATTATT-AAGATAGTC
1 CAATTATTTTATGACAAAACAAAAAAGTCATAACAATTTGAAATAAATAACTATTCAA-ATAGTC
* * * * * * * * * **
38417 ATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTTAATTCTTTTATTTTTTAATTTTTG
65 ATAACGATTTGAA--TG-T-GATAAACACATTTA-TTTCTAAAATATTTTACTTATTAATTGTCA
* * * * *
38482 GAATATTAATAAATTTGTATTATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTA
125 AAATATTAATAAATTTGTATTATTTTATTCCAAATAAGCTTATATGAATAGAAACAATTGTTTTA
* * * * * * *
38547 TTACAAAACAAAATGTTACAATGATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAA
190 TGAC-AAACAAAATGTTATAAAGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAA
* * * * * *
38612 CTTGTTTGGTAAACTTATT-TTTTTAAAATCTTTTACTTATTAATTGTTGAATTATTAATAAATT
254 CTTGTTT-GTAAA-TGATTATTTTTTAAATCTCTTAATTATTAATTGTTCAAATATTAATAAATT
* * * * *
38676 AATATTATTTTAATGCGATAAGCTTGTATGGACGGAAA
317 AATATTATTTTAATCCAATAACCTTATATGAACGGAAA
* * *
38714 CAATTATTTTATGACAAAACAAAAAAGTCATAAGAATTTGAAATAAATAATTATTCAGATAGTCA
1 CAATTATTTTATGACAAAACAAAAAAGTCATAACAATTTGAAATAAATAACTATTCAAATAGTCA
* * * **
38779 TAACGATTTGAATTTGTTCGATAAATACATTTATTTTTTAAATATTTTACTTATTAATTGTCTTA
66 TAACGATTTGAA--TG-T-GATAAACACATTTATTTCTAAAATATTTTACTTATTAATTGTCAAA
* * * * * ** *
38844 ATGTTAATAAATTTGTATTATTTTATTCGAAGTAAGCTTATATGAACA-AATAAAATCATTATAT
127 ATATTAATAAATTTGTATTATTTTATTCCAAATAAGCTTATATGAATAGAA-ACAATTGTTTTAT
* * ** * * * * *
38908 GACAAACCAAAAGGTTATAGCA-ATTCCAAATCAATAATTGTTCAAATGGCCATAATTATTTAAA
191 GACAAA-CAAAATGTTATA-AAGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAA
*
38972 TTTGTTTAGTAAATAGATTCATTTTTTAAATCTCTTAATTATTAATT-TTCATAATATTAATAAC
254 CTTGTTT-GTAAAT-GATT-ATTTTTTAAATCTCTTAATTATTAATTGTTCA-AATATTAATAA-
** * *
39036 A-TGGTATTATTTTATTTCCAATAACCTTATATGAACTGAAA
314 ATTAATATTATTTTA-ATCCAATAACCTTATATGAACGGAAA
* * * *
39077 TAAGTT-TTTTATGACAAAAC-AAAAGGTCATAACTATTTGAAATAAATAACTATTTAAATAGTC
1 CAA-TTATTTTATGACAAAACAAAAAAGTCATAACAATTTGAAATAAATAACTATTCAAATAGTC
* * *
39140 ATGACTA-TTG-A-G-G-TAAACATATTTATTTCTAAAAT-TTTTAACTTATTAATTGTCAAAAT
65 ATAACGATTTGAATGTGATAAACACATTTATTTCTAAAATATTTT-ACTTATTAATTGTCAAAAT
* * *
39199 ATTAATAAATTAGTATTATTTTAATCCAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGAC
129 ATTAATAAATTTGTATTATTTTATTCCAAATAAGCTTATATGAATAGAAACAATTGTTTTATGAC
* **
39264 AGAACAAAATGTTATAAAGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAACAAG
194 A-AACAAAATGTTATAAAGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * * * * *
39329 TTTGATAAATGGATTTATTTTTTAAATCAC-T--TT-TTAGTTTTTGAAATATTAATAGATTAGT
258 TTTG-TAAAT-GA-TTATTTTTTAAATCTCTTAATTATTAATTGTTCAAATATTAATAAATTAAT
* * * * *
39390 ATTACTTTATTCCTAATAAACTTATAAGAAC-AAAA
320 ATTATTTTAATCC-AATAACCTTATATGAACGGAAA
* * * * ** ** * * *
39425 CCATTTGTTTTATAACAAAAC-AAAAAGTAATAATGATTTGAAATATGTAATTGTTCAAATAGTT
1 -CAATTATTTTATGACAAAACAAAAAAGTCATAACAATTTGAAATAAATAACTATTCAAATAGTC
39489 ATAA
65 ATAA
39493 TTATTTAAAC
Statistics
Matches: 629, Mismatches: 127, Indels: 57
0.77 0.16 0.07
Matches are distributed among these distances:
348 10 0.02
349 91 0.14
350 5 0.01
352 7 0.01
353 156 0.25
354 7 0.01
357 1 0.00
359 6 0.01
360 156 0.25
361 65 0.10
362 87 0.14
363 36 0.06
364 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (354 bp):
CAATTATTTTATGACAAAACAAAAAAGTCATAACAATTTGAAATAAATAACTATTCAAATAGTCA
TAACGATTTGAATGTGATAAACACATTTATTTCTAAAATATTTTACTTATTAATTGTCAAAATAT
TAATAAATTTGTATTATTTTATTCCAAATAAGCTTATATGAATAGAAACAATTGTTTTATGACAA
ACAAAATGTTATAAAGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTT
GTAAATGATTATTTTTTAAATCTCTTAATTATTAATTGTTCAAATATTAATAAATTAATATTATT
TTAATCCAATAACCTTATATGAACGGAAA
Found at i:39547 original size:16 final size:16
Alignment explanation
Indices: 39522--39579 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
39512 AAATTAAAAA
39522 AATTAATATTATAATT
1 AATTAATATTATAATT
* *
39538 AATTATTATTTTAATT
1 AATTAATATTATAATT
39554 AATAATAATATTTATTAATT
1 AAT--TAATA-TTA-TAATT
39574 AATTAA
1 AATTAA
39580 AATATTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 17 0.50
18 7 0.21
19 2 0.06
20 8 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTAATATTATAATT
Found at i:39571 original size:20 final size:20
Alignment explanation
Indices: 39548--39585 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
39538 AATTATTATT
39548 TTAATTAA-TAATAATATTTA
1 TTAATTAATTAA-AATATTTA
39568 TTAATTAATTAAAATATT
1 TTAATTAATTAAAATATT
39586 AAAAATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATTAATTAAAATATTTA
Found at i:39617 original size:16 final size:16
Alignment explanation
Indices: 39588--39621 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
39578 AAAATATTAA
39588 AAATTTACAATAATAT
1 AAATTTACAATAATAT
39604 AAATTTA-AATTAATAT
1 AAATTTACAA-TAATAT
39620 AA
1 AA
39622 TAATAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTTACAATAATAT
Found at i:39804 original size:19 final size:20
Alignment explanation
Indices: 39752--39804 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
39742 ATATTAATTA
*
39752 TATTAATATTAATATAATATT
1 TATTAATATT-ATATAATAAT
39773 TATTGAATA--ATATAATAAT
1 TATT-AATATTATATAATAAT
39792 TATT-ATATTATAT
1 TATTAATATTATAT
39805 TTTATTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 3 0.11
19 17 0.61
21 4 0.14
22 4 0.14
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TATTAATATTATATAATAAT
Found at i:40897 original size:177 final size:176
Alignment explanation
Indices: 40280--41456 Score: 872
Period size: 177 Copynumber: 6.6 Consensus size: 176
40270 TAAATCTTTT
* *
40280 ACTTATTAATTATCTT--AATATTAATAAATTTGTATTATTTTA-TTCGAAATAAGCTTAGATGA
1 ACTTATTAATT-T-TTGAAATATTAATAAATTAGTATTATTTTATTTCG-AATAAGCTTATATGA
* * * * * * *
40342 ACA-AAAAAATTCTTTTATTACAAAACAAAAGGTTATAGCTA-TT----T-CATAATTATTCAAA
63 ACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAA
* * * * * * * ** *
40400 CAGTCTTAATTATTTAAATTTGTTTAGTAAA-AACGTAATTTTTTAAATC
128 TAGTCATAACTATTTGAACTGGTTGA-TAAACAAATTTATTTTTTAAATC
* * * ** *
40449 TCTTTATTATTAATTTTTGGATTATTAATAAATTAGTATTATTTTATTTTAAACAAGCTTATATG
1 AC----TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATG
* * * * *
40514 AACTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAACGATTTGAAATAGATAATTATTCAA
62 AACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAA
* * * * * * * *
40579 ATTGTCATGATTATTTGATCTAGTGTGGTAAACATATTT-TTAAATTTT---TT
127 ATAGTCATAACTATTTGAACTGGT-TGATAAACAAATTTATT---TTTTAAATC
* * * * * *
40629 ACTTACTAA-TTGTCAAACTATTAATAAATTAGTATTATTTTGA-TGCAAATAAGCTTGTATGAA
1 ACTTATTAATTTTTGAAA-TATTAATAAATTAGTATTATTTT-ATTTCGAATAAGCTTATATGAA
* ** * * * *
40692 TAGAAACAATTGTTTTACAACAAAACAAAAAGTCATAATGATTTCAAATAAATAATTGTTCAAAT
64 CAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAAT
** * * * * *
40757 AGTCATAACTATTTGAACTAAATTGATACATAGATTTATTATCTAAATC
129 AGTCATAACTATTTGAACT-GGTTGATAAACAAATTTATTTTTTAAATC
* * * *
40806 ACTTATTAATTTTTAAAATATTAATAGATTAGTATTACTTTATTTCGAATAAACTTATATGAACA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACA
* * * * * * *
40871 AAAACATTTGTTGTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTATTCAAATAG
66 GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAG
* * * *
40936 T-ATAATTTTTTGAACTGGTTAGGTAAA-AAGAATTATTTTTTAAATCTC
131 TCATAACTATTTGAACTGGTT-GATAAACAA-ATTTATTTTTTAAA--TC
* * *
40984 TTACTTATTATTTTTTGAAACATTAATAAATTTA-TTTTATTTTATTTC-AATAAGC-TAGTATG
1 --ACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCGAATAAGCTTA-TATG
** * * * * *
41046 AATTGAGAA-AATTGTTTTATGACAAGACAAAAGGTTATAACAATTTGAAATAGATAATTGTTCA
62 AACAGA-AACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCA
* * * *
41110 TATAGTCTTAACTATTTGAATTGGTTCGACAAACAAATTTATTTTTTAAATCCC
126 AATAGTCATAACTATTTGAACTGGTT-GATAAACAAATTTATTTTTTAAAT--C
* * * * * * *
41164 TTAGTTATTAATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGAATAAGCTTGTATGAA
1 --ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAA
* * * * * * * * *
41229 TAGAAATAATTGTTTTATGACATAATAAAAGGTTATAATGATTTGAAGTATAGAATTATTCAAAT
64 CAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAAT
* *
41294 AGTCATAACTATTTGAACTAGTTTGATAAACAAATTCATTTTTTAAATC
129 AGTCATAACTATTTGAACT-GGTTGATAAACAAATTTATTTTTTAAATC
* * * * * *
41343 TCTTATTAATTTTTGAAAGATTAATAAATTATTATTATTTTATTTCGAATAATCATGTATGATA-
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGA-AC
* * * *
41407 AAAAACAATTGTTATATGACCAAACAAAAGGTGATAACGATTTGAAATAA
65 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAA
41457 TATCTTGTTA
Statistics
Matches: 792, Mismatches: 169, Indels: 86
0.76 0.16 0.08
Matches are distributed among these distances:
169 1 0.00
171 2 0.00
172 1 0.00
173 48 0.06
174 35 0.04
175 9 0.01
176 152 0.19
177 200 0.25
178 12 0.02
179 69 0.09
180 144 0.18
181 111 0.14
182 4 0.01
183 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (176 bp):
ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACA
GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAG
TCATAACTATTTGAACTGGTTGATAAACAAATTTATTTTTTAAATC
Found at i:42081 original size:21 final size:22
Alignment explanation
Indices: 42037--42082 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
42027 AAATTGATTA
*
42037 TTAAAATTAAATAAAATAATAT
1 TTAAAATTAAATAAAATAAGAT
* *
42059 TTAAAA-TAAATACAATTAGAT
1 TTAAAATTAAATAAAATAAGAT
42080 TTA
1 TTA
42083 TAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAATTAAATAAAATAAGAT
Found at i:43364 original size:23 final size:24
Alignment explanation
Indices: 43317--43365 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
43307 TTTTTGTTTA
*
43317 TATAAATTATTTATTAATAATTAT
1 TATAAATTATTTATTAATAAATAT
43341 TATAAA-TATTTA-TAATCAAATAT
1 TATAAATTATTTATTAAT-AAATAT
43364 TA
1 TA
43366 ATAATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 13 0.57
24 6 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TATAAATTATTTATTAATAAATAT
Found at i:43376 original size:13 final size:13
Alignment explanation
Indices: 43342--43376 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
43332 AATAATTATT
*
43342 ATAAATATTTATA
1 ATAAATATTAATA
43355 ATCAAATATTAATA
1 AT-AAATATTAATA
43369 ATAAATAT
1 ATAAATAT
43377 ATTTTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAATATTAATA
Found at i:43438 original size:28 final size:26
Alignment explanation
Indices: 43407--43463 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
43397 TTATATTTAA
* *
43407 ATAAGTATTATTAATTAATTATAATATT
1 ATAAGTAATATTAATT-ATT-TAATAGT
*
43435 ATAATTAATATTAATTATTTAATAGT
1 ATAAGTAATATTAATTATTTAATAGT
43461 ATA
1 ATA
43464 TAATTAAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.35
27 3 0.12
28 14 0.54
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
ATAAGTAATATTAATTATTTAATAGT
Found at i:43449 original size:18 final size:19
Alignment explanation
Indices: 43407--43443 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
43397 TTATATTTAA
43407 ATAAGTATTATTAATTAATT
1 ATAA-TATTATTAATTAATT
43427 ATAATATTA-TAATTAAT
1 ATAATATTATTAATTAAT
43444 ATTAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATAATATTATTAATTAATT
Found at i:43457 original size:18 final size:18
Alignment explanation
Indices: 43413--43457 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
43403 TTAAATAAGT
43413 ATTA-TTAATTAATTATA
1 ATTATTTAATTAATTATA
43430 A-TATTATAATTAA-TATTA
1 ATTATT-TAATTAATTA-TA
43448 ATTATTTAAT
1 ATTATTTAAT
43458 AGTATATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
16 2 0.08
17 4 0.17
18 14 0.58
19 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATTTAATTAATTATA
Found at i:43465 original size:28 final size:28
Alignment explanation
Indices: 43415--43470 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
43405 AAATAAGTAT
43415 TATTAATTAATTATAATATTATAATTAA
1 TATTAATTAATTATAATATTATAATTAA
43443 TATTAATT-ATT-TAATAGTATATAATTAA
1 TATTAATTAATTATAATA-T-TATAATTAA
43471 GTAATATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 5 0.19
27 4 0.15
28 17 0.65
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (28 bp):
TATTAATTAATTATAATATTATAATTAA
Found at i:43938 original size:23 final size:23
Alignment explanation
Indices: 43901--43947 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
43891 AATTATTAAA
*
43901 TTAATTAAATAATAATTAAATAT
1 TTAATTAAATAATAAATAAATAT
* * *
43924 TTAATTAATTTATAAATAATTAT
1 TTAATTAAATAATAAATAAATAT
43947 T
1 T
43948 AAAATTACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAATTAAATAATAAATAAATAT
Found at i:44202 original size:23 final size:23
Alignment explanation
Indices: 44166--44229 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 23
44156 TAAATATTAA
*
44166 TAATCTTATAATATATAAACAGTT
1 TAAT-TTATTATATATAAACAGTT
* *
44190 TTATTTATTATATATAAAATAGTT
1 TAATTTATTATATAT-AAACAGTT
44214 TAATTT-TTA-ATATAAA
1 TAATTTATTATATATAAA
44230 TATATTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 3 0.09
22 4 0.11
23 13 0.37
24 15 0.43
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (23 bp):
TAATTTATTATATATAAACAGTT
Found at i:44219 original size:24 final size:24
Alignment explanation
Indices: 44166--44238 Score: 71
Period size: 23 Copynumber: 3.1 Consensus size: 24
44156 TAAATATTAA
* *
44166 TAATCTTATAATATAT-AAACAGTT
1 TAAT-TTATTATATATAAAATAGTT
*
44190 TTATTTATTATATATAAAATAGTT
1 TAATTTATTATATATAAAATAGTT
*
44214 TAATTT-TTA-ATATAAATATATTT
1 TAATTTATTATATATAAA-ATAGTT
44237 TA
1 TA
44239 TAATATAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
22 7 0.17
23 20 0.48
24 15 0.36
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (24 bp):
TAATTTATTATATATAAAATAGTT
Found at i:44248 original size:17 final size:18
Alignment explanation
Indices: 44216--44261 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
44206 AAATAGTTTA
44216 ATTTTTAATATAAATA-T
1 ATTTTTAATATAAATATT
44233 ATTTTATAATAT-AATATT
1 ATTTT-TAATATAAATATT
44251 ATTTATTAATA
1 ATTT-TTAATA
44262 GTAAGTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.35
18 16 0.62
19 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTTTAATATAAATATT
Found at i:44312 original size:18 final size:18
Alignment explanation
Indices: 44272--44306 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
44262 GTAAGTAAAA
*
44272 ATAATTTATTAATATATT
1 ATAATTTATAAATATATT
44290 ATAATTTATAAATATAT
1 ATAATTTATAAATATAT
44307 ATTAATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATAATTTATAAATATATT
Found at i:44477 original size:26 final size:28
Alignment explanation
Indices: 44424--44484 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
44414 ATTTAATTTA
*
44424 ATATAATTATAATATATTAATTATTAAT
1 ATATAATTATAATATATTAATTAGTAAT
* *
44452 ATATAATTAT-ATTTA-TAATTGGTAAT
1 ATATAATTATAATATATTAATTAGTAAT
44478 ATTATAA
1 A-TATAA
44485 ATAGTATCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 10 0.34
27 9 0.31
28 10 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (28 bp):
ATATAATTATAATATATTAATTAGTAAT
Found at i:44757 original size:21 final size:21
Alignment explanation
Indices: 44715--44757 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
44705 TTAATAGTCA
*
44715 TAATAGTAAATAATTTACTAT
1 TAATAGTAAATAATTAACTAT
*
44736 TAATA-TAATATAATTAATTAT
1 TAATAGTAA-ATAATTAACTAT
44757 T
1 T
44758 TTGTTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TAATAGTAAATAATTAACTAT
Found at i:44800 original size:13 final size:13
Alignment explanation
Indices: 44784--44808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44774 ATTAAATTAA
44784 TATTATATAATTT
1 TATTATATAATTT
44797 TATTATATAATT
1 TATTATATAATT
44809 AACTATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTATATAATTT
Found at i:45172 original size:25 final size:25
Alignment explanation
Indices: 45136--45189 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
45126 TTATTTAAAG
*
45136 AATTAAATAATTTAAAT-ATAATTAT
1 AATTAAATAATTT-AATGATAATAAT
45161 AATT-AATGAATTTAATGATAATAAT
1 AATTAAAT-AATTTAATGATAATAAT
45186 AATT
1 AATT
45190 GATATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (25 bp):
AATTAAATAATTTAATGATAATAAT
Found at i:45420 original size:20 final size:20
Alignment explanation
Indices: 45392--45460 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 20
45382 GACTATTAAT
*
45392 AATATTTATAATCATATATA
1 AATAATTATAATCATATATA
*
45412 AATAATTATAAACA-AT-TA
1 AATAATTATAATCATATATA
*
45430 TATATATTATAAT--TATATA
1 AATA-ATTATAATCATATATA
*
45449 AATTATTATAAT
1 AATAATTATAAT
45461 TTAAATAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
18 15 0.38
19 13 0.32
20 12 0.30
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATTATAATCATATATA
Found at i:45445 original size:15 final size:15
Alignment explanation
Indices: 45425--45454 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45415 AATTATAAAC
*
45425 AATTATATATATTAT
1 AATTATATAAATTAT
45440 AATTATATAAATTAT
1 AATTATATAAATTAT
45455 TATAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTATATAAATTAT
Found at i:45480 original size:24 final size:24
Alignment explanation
Indices: 45410--45480 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
45400 TAATCATATA
*
45410 TAAATAATTATAAACAATTATATATAT
1 TAAATAA-TATAAATAATTATA-AT-T
* *
45437 TATAATTATATAAATTATTATAATT
1 TA-AATAATATAAATAATTATAATT
*
45462 TAAATAATATATATAATTA
1 TAAATAATATAAATAATTA
45481 AAAACTAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
24 14 0.38
25 3 0.08
26 2 0.05
27 14 0.38
28 4 0.11
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (24 bp):
TAAATAATATAAATAATTATAATT
Found at i:45595 original size:22 final size:20
Alignment explanation
Indices: 45570--45615 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
45560 TTATTTAAGT
*
45570 TTAATAATATTTTATTATTATA
1 TTAATAATAGTTTA-TATTA-A
*
45592 TTAATTATAGTTTATATTAA
1 TTAATAATAGTTTATATTAA
45612 TTAA
1 TTAA
45616 ACTTAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 5 0.23
22 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTAATAATAGTTTATATTAA
Found at i:46248 original size:14 final size:14
Alignment explanation
Indices: 46217--46246 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
46207 TTAATTACCA
46217 TTATAATTATAATT
1 TTATAATTATAATT
46231 TTATAAATTATAATT
1 TTAT-AATTATAATT
46246 T
1 T
46247 ATTATTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATAATTATAATT
Found at i:46911 original size:25 final size:25
Alignment explanation
Indices: 46859--46913 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
46849 TAGTAATAAT
* *
46859 ATATATTATTTTAATTCTAATTAAA
1 ATATATTATTTTAAATATAATTAAA
*
46884 ATATATTATATTTAAATATAA-TATA
1 ATATATTAT-TTTAAATATAATTAAA
46909 ATATA
1 ATATA
46914 CATGTCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATATATTATTTTAAATATAATTAAA
Found at i:47029 original size:36 final size:36
Alignment explanation
Indices: 46986--47057 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
46976 TCATAGTCAT
46986 TTATTTATAAAACAATTATATTAATA-ATAATATTAA
1 TTATTTATAAAACAATTATA-TAATACATAATATTAA
**
47022 TTATTTATATTACAATTATATAATACTATAATATTA
1 TTATTTATAAAACAATTATATAATAC-ATAATATTA
47058 CTATATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
35 5 0.16
36 18 0.56
37 9 0.28
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (36 bp):
TTATTTATAAAACAATTATATAATACATAATATTAA
Found at i:47202 original size:19 final size:19
Alignment explanation
Indices: 47160--47227 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
47150 TAGACAAAAT
*
47160 ATAATAATTA-TATA-ATA
1 ATAATAATTATTATATTTA
*
47177 AT-TTAATTATTATATTTA
1 ATAATAATTATTATATTTA
*
47195 ATAATAATTGTTAATATTTA
1 ATAATAATTATT-ATATTTA
*
47215 A-AATAATTGTTAT
1 ATAATAATTATTAT
47228 TAATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
16 6 0.14
17 6 0.14
18 6 0.14
19 17 0.40
20 8 0.19
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
ATAATAATTATTATATTTA
Found at i:47213 original size:20 final size:19
Alignment explanation
Indices: 47188--47257 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 19
47178 TTTAATTATT
47188 ATATTTAATAATAATTGTTA
1 ATATTTAA-AATAATTGTTA
47208 ATATTTAAAATAATTGTTA
1 ATATTTAAAATAATTGTTA
*
47227 TTAATTTAAAATGAATTAGATTA
1 AT-ATTTAAAAT-AATT-G-TTA
47250 ATATTTAA
1 ATATTTAA
47258 GGATTAATCA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
19 12 0.27
20 17 0.39
21 4 0.09
22 7 0.16
23 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (19 bp):
ATATTTAAAATAATTGTTA
Found at i:47230 original size:22 final size:19
Alignment explanation
Indices: 47180--47257 Score: 72
Period size: 19 Copynumber: 3.9 Consensus size: 19
47170 TATAATAATT
47180 TAATT-ATTATATTTAATAA
1 TAATTGATTATATTTAA-AA
47199 TAATTG-TTAATATTTAAAA
1 TAATTGATT-ATATTTAAAA
47218 TAATTG-TTATTAATTTAAAA
1 TAATTGATTA-T-ATTTAAAA
47238 TGAATTAGATTAATATTTAA
1 T-AATT-GATT-ATATTTAA
47258 GGATTAATCA
Statistics
Matches: 51, Mismatches: 0, Indels: 13
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.02
19 18 0.35
20 17 0.33
21 4 0.08
22 7 0.14
23 3 0.06
24 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TAATTGATTATATTTAAAA
Found at i:47527 original size:21 final size:22
Alignment explanation
Indices: 47501--47541 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
47491 AAATTAGTAT
* *
47501 TAATTATTATTAAT-ATTTTAA
1 TAATTAATATAAATGATTTTAA
47522 TAATTAATATAAATGATTTT
1 TAATTAATATAAATGATTTT
47542 TACTTATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TAATTAATATAAATGATTTTAA
Found at i:47723 original size:40 final size:46
Alignment explanation
Indices: 47676--47764 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 46
47666 GAAAATTGTC
*
47676 TTATTATTTAATT-AT-T-TG-TTATTATAA-CATTTA-AATATTA
1 TTATTATTTAATTAATATATGAATATTATAATCATTTATAATATTA
47716 TTATTATTTAATTAATATATGAATATTATAATCATTTATAATATTA
1 TTATTATTTAATTAATATATGAATATTATAATCATTTATAATATTA
47762 TTA
1 TTA
47765 AAATTAGTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
40 13 0.31
41 2 0.05
42 1 0.02
43 2 0.05
44 8 0.19
45 6 0.14
46 10 0.24
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (46 bp):
TTATTATTTAATTAATATATGAATATTATAATCATTTATAATATTA
Found at i:47763 original size:21 final size:21
Alignment explanation
Indices: 47694--47779 Score: 59
Period size: 21 Copynumber: 4.0 Consensus size: 21
47684 TAATTATTTG
47694 TTATTATAA-CATTTA-AATA
1 TTATTATAATCATTTATAATA
* * *
47713 TTATTATTATTTAATTAATATATGA
1 TTATTA-TA-ATCATTTATA-AT-A
*
47738 ATATTATAATCATTTATAATA
1 TTATTATAATCATTTATAATA
* * *
47759 TTATTAAAATTAGTTATAATA
1 TTATTATAATCATTTATAATA
47780 ATTAGTCAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
19 6 0.12
20 2 0.04
21 18 0.36
22 6 0.12
23 8 0.16
24 4 0.08
25 6 0.12
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TTATTATAATCATTTATAATA
Found at i:47889 original size:30 final size:31
Alignment explanation
Indices: 47847--47906 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
47837 ATTGCTTGGA
47847 TAAATTTAAATAAATAATTTACT-AATTTAT
1 TAAATTTAAATAAATAATTTACTAAATTTAT
* *
47877 TAAAGTTT-AATAAGTAATTTATTAAATTTA
1 TAAA-TTTAAATAAATAATTTACTAAATTTA
47907 ATTGTTATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (31 bp):
TAAATTTAAATAAATAATTTACTAAATTTAT
Found at i:48401 original size:27 final size:27
Alignment explanation
Indices: 48327--48408 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 27
48317 ATATAAATTA
* *
48327 ATTATTATTAATAATAAATAATAA-A-T
1 ATTATTATTAA-ATTAACTAATAATACT
* *
48353 AATTATTATTATATTAACTAATATTACT
1 -ATTATTATTAAATTAACTAATAATACT
*
48381 ATTATTATTGAAATTTA-TAATAATACT
1 ATTATTATT-AAATTAACTAATAATACT
48408 A
1 A
48409 GTTAATATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 9 0.20
27 30 0.67
28 6 0.13
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (27 bp):
ATTATTATTAAATTAACTAATAATACT
Found at i:49413 original size:26 final size:25
Alignment explanation
Indices: 49349--49413 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
49339 TAACATTCTA
* *
49349 AAAATTAATTAGTTTAAATAATTATT
1 AAAA-TAATTAATTTAAATAAATATT
*
49375 AAATTATAA-TAATTTAATTAAATATT
1 AAA--ATAATTAATTTAAATAAATATT
49401 CAAAATAATTAAT
1 -AAAATAATTAAT
49414 AATTATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 4 0.12
26 21 0.66
27 6 0.19
28 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
AAAATAATTAATTTAAATAAATATT
Found at i:49695 original size:43 final size:40
Alignment explanation
Indices: 49647--49739 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 40
49637 TAAAATCTAT
49647 TTTATTGATTAATATTAAAAATTA-TGACAATTTATAATTAATA
1 TTTATT-ATTAA-ATT-AAAATTAGTGA-AATTTATAATTAATA
* * *
49690 TTTATTA-TAAATTTAAATTAGTTAATTTTATAATTAATA
1 TTTATTATTAAATTAAAATTAGTGAAATTTATAATTAATA
49729 TTTATTTATTA
1 TTTA-TTATTA
49740 TTAATTATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
39 24 0.55
40 8 0.18
41 5 0.11
42 1 0.02
43 6 0.14
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (40 bp):
TTTATTATTAAATTAAAATTAGTGAAATTTATAATTAATA
Found at i:49742 original size:17 final size:16
Alignment explanation
Indices: 49716--49766 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
49706 ATTAGTTAAT
*
49716 TTTATAATTAATATTTA
1 TTTATTATTAATA-TTA
49733 TTTATTATT-A-ATTA
1 TTTATTATTAATATTA
*
49747 TTAATTATTAATAATTA
1 TTTATTATTAAT-ATTA
49764 TTT
1 TTT
49767 TAATTCATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 11 0.39
15 2 0.07
16 1 0.04
17 14 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATTATTAATATTA
Found at i:49746 original size:7 final size:7
Alignment explanation
Indices: 49683--49778 Score: 65
Period size: 7 Copynumber: 13.9 Consensus size: 7
49673 ACAATTTATA
49683 ATTAA-T
1 ATTAATT
*
49689 ATTTATT
1 ATTAATT
*
49696 ATAAATT
1 ATTAATT
*
49703 -TAAATT
1 ATTAATT
49709 AGTTAATT
1 A-TTAATT
*
49717 TTATAATT
1 AT-TAATT
* *
49725 AATATTT
1 ATTAATT
*
49732 ATTTATT
1 ATTAATT
49739 ATTAATT
1 ATTAATT
49746 ATTAATT
1 ATTAATT
*
49753 ATTAATA
1 ATTAATT
49760 ATT-ATT
1 ATTAATT
49766 -TTAATT
1 ATTAATT
49772 CATTAAT
1 -ATTAAT
49779 ACTAATAACA
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
5 2 0.03
6 15 0.22
7 37 0.54
8 15 0.22
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (7 bp):
ATTAATT
Found at i:49792 original size:26 final size:25
Alignment explanation
Indices: 49740--49811 Score: 65
Period size: 26 Copynumber: 2.8 Consensus size: 25
49730 TTATTTATTA
* * *
49740 TTAATTATTAATTATTAATAATTATT
1 TTAATTATTAATTACTAATAA-CAAT
49766 TTAATTCATTAA-TACTAATAACAAT
1 TTAATT-ATTAATTACTAATAACAAT
*
49791 TTAATTAGTATAATTAATAAT
1 TTAATTA-T-TAATTACTAAT
49812 TCTTATGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.03
25 9 0.24
26 17 0.45
27 11 0.29
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (25 bp):
TTAATTATTAATTACTAATAACAAT
Found at i:49981 original size:24 final size:24
Alignment explanation
Indices: 49917--49981 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
49907 TTATTTATTT
* *
49917 TAAATATTATTTTATT-TAAATTAA
1 TAAATATTA-TTAATTATAAATAAA
*
49941 TAAATAATTAATAATTATAAATAAA
1 TAAAT-ATTATTAATTATAAATAAA
*
49966 TAAATATTATTGATTA
1 TAAATATTATTAATTA
49982 AATCATAACT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 18 0.53
25 16 0.47
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
TAAATATTATTAATTATAAATAAA
Found at i:50043 original size:22 final size:22
Alignment explanation
Indices: 50015--50058 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
50005 AATTATAGGA
50015 AATTTTAATAATTAA-ATTAAAT
1 AATTTTAAT-ATTAATATTAAAT
*
50037 AATTTTAATTTTAATATTAAAT
1 AATTTTAATATTAATATTAAAT
50059 TATTAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATTTTAATATTAATATTAAAT
Found at i:50140 original size:14 final size:15
Alignment explanation
Indices: 50116--50144 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50106 TAATAACTAT
50116 ATATCATAATAAAAA
1 ATATCATAATAAAAA
50131 ATAT-ATAATAAAAA
1 ATATCATAATAAAAA
50145 TTAATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATCATAATAAAAA
Found at i:51007 original size:15 final size:15
Alignment explanation
Indices: 50987--51015 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50977 AAAGTAATTG
50987 ATATTATTAGTTAAC
1 ATATTATTAGTTAAC
51002 ATATTATTAGTTAA
1 ATATTATTAGTTAA
51016 TATAGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (15 bp):
ATATTATTAGTTAAC
Found at i:51970 original size:19 final size:20
Alignment explanation
Indices: 51942--51985 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
51932 TAACTAAGAT
*
51942 TAAATAATAATTTATTTAATA
1 TAAATAATAA-TAATTTAATA
51963 -AAAT-ATAATAATTTAATA
1 TAAATAATAATAATTTAATA
51981 TAAAT
1 TAAAT
51986 TAGTTATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.43
19 8 0.38
20 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAATAATAATAATTTAATA
Found at i:51993 original size:36 final size:34
Alignment explanation
Indices: 51953--52030 Score: 81
Period size: 36 Copynumber: 2.3 Consensus size: 34
51943 AAATAATAAT
51953 TTATTTAATAAAATA-TAATAATTTAATATAAATTA
1 TTATTTAATAAAATATTAATAATTT-ATA-AAATTA
* * *
51988 GTTATTT-GTATAATATTAGTAATTTATAAAATTA
1 -TTATTTAATAAAATATTAATAATTTATAAAATTA
52022 -TATTTAATA
1 TTATTTAATA
52031 GATAATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
32 5 0.14
33 2 0.06
34 6 0.17
35 9 0.25
36 14 0.39
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (34 bp):
TTATTTAATAAAATATTAATAATTTATAAAATTA
Found at i:51994 original size:18 final size:17
Alignment explanation
Indices: 51953--52030 Score: 63
Period size: 18 Copynumber: 4.6 Consensus size: 17
51943 AAATAATAAT
*
51953 TTATTTAATAAAATATAA
1 TTATTTAATAAAAT-TAG
*
51971 TAATTTAATATAAATTAG
1 TTATTTAATA-AAATTAG
* *
51989 TTATTTGTATAATATTAG
1 TTATTT-AATAAAATTAG
*
52007 TAATTT-ATAAAATTA-
1 TTATTTAATAAAATTAG
52022 -TATTTAATA
1 TTATTTAATA
52031 GATAATTATT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
14 4 0.08
15 3 0.06
16 8 0.16
18 27 0.55
19 7 0.14
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (17 bp):
TTATTTAATAAAATTAG
Found at i:52222 original size:22 final size:23
Alignment explanation
Indices: 52175--52230 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
52165 TAAAACAATT
*
52175 ATAG-TAATAATATATATTATTTA
1 ATAGTTAATAATATATA-TATTAA
52198 ATAGTTAATAATATATA-ATTAA
1 ATAGTTAATAATATATATATTAA
52220 ATAGTT-ATAAT
1 ATAGTTAATAAT
52231 TATTTGAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 5 0.16
22 10 0.32
23 4 0.13
24 12 0.39
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (23 bp):
ATAGTTAATAATATATATATTAA
Found at i:52753 original size:18 final size:19
Alignment explanation
Indices: 52720--52755 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
52710 ACACTTTGAT
*
52720 TTTTTAAATATCTTATTAA
1 TTTTTAAATATATTATTAA
52739 TTTTTAAA-ATATTATTA
1 TTTTTAAATATATTATTA
52756 GTTTAGCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTAAATATATTATTAA
Found at i:53289 original size:25 final size:25
Alignment explanation
Indices: 53256--53353 Score: 65
Period size: 25 Copynumber: 3.6 Consensus size: 25
53246 TAGAAATATT
53256 ATTTAAATTATTTATTTAAAAATTAA
1 ATTT-AATTATTTATTTAAAAATTAA
*
53282 ATTTAATTATTAATTATGAAATAAATTAA
1 ATTTAATTATTTATT-T--AA-AAATTAA
*
53311 TATATTATATTATATTATTT-ATAA-TAA
1 -AT-TTA-ATTAT-TTATTTAAAAATTAA
53338 ATTATAATTAATTTAT
1 ATT-TAATT-ATTTAT
53354 ATTATAGTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 21
0.71 0.04 0.25
Matches are distributed among these distances:
25 18 0.31
26 11 0.19
27 3 0.05
28 4 0.07
29 8 0.14
30 2 0.03
31 3 0.05
32 6 0.10
33 4 0.07
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
ATTTAATTATTTATTTAAAAATTAA
Found at i:53353 original size:21 final size:22
Alignment explanation
Indices: 53311--53387 Score: 60
Period size: 19 Copynumber: 3.8 Consensus size: 22
53301 AATAAATTAA
*
53311 TATATTAT-ATTAT-ATT-ATT
1 TATAATATAATTATAATTAATT
53330 TATAATA-AATTATAATTAATT
1 TATAATATAATTATAATTAATT
* *
53351 TATATTATAGTTATAA-TAA-T
1 TATAATATAATTATAATTAATT
* *
53371 TAAAATATTATT-TAATT
1 TATAATATAATTATAATT
53388 TTATTATCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
19 14 0.30
20 13 0.28
21 12 0.26
22 7 0.15
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (22 bp):
TATAATATAATTATAATTAATT
Found at i:53364 original size:6 final size:5
Alignment explanation
Indices: 53311--53365 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
53301 AATAAATTAA
* *
53311 TATAT TATAT TATAT TAT-T TATAA TAAAT TATAAT TA-ATT TATAT TATAGT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT-AT TATA-T TATAT TATA-T
53362 TATA
1 TATA
53366 ATAATTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
4 5 0.12
5 26 0.63
6 10 0.24
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
TATAT
Found at i:53384 original size:32 final size:31
Alignment explanation
Indices: 53249--53384 Score: 106
Period size: 32 Copynumber: 4.4 Consensus size: 31
53239 TATTATATAG
*
53249 AAATATTATTTAAATTATTTATTTAA-AAATT-
1 AAATATTATTTATATTATTTA--TAATAAATTA
* *
53280 AAAT-TTA-AT-TATTAATTATGAAATAAATTA
1 AAATATTATTTATATTATTTAT--AATAAATTA
*
53310 ATATATTATATTATATTATTTATAATAAATTA
1 AAATATTAT-TTATATTATTTATAATAAATTA
* *
53342 TAAT-TAATTTATATTATAGTTATAAT-AATTA
1 AAATATTATTTATATTAT--TTATAATAAATTA
53373 AAATATTATTTA
1 AAATATTATTTA
53385 ATTTTATTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
26 1 0.01
28 9 0.11
29 6 0.07
30 15 0.18
31 18 0.22
32 24 0.29
33 1 0.01
34 9 0.11
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (31 bp):
AAATATTATTTATATTATTTATAATAAATTA
Found at i:53463 original size:17 final size:16
Alignment explanation
Indices: 53442--53487 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
53432 AATTATTTGC
53442 TAATTATTATAATTAA
1 TAATTATTATAATTAA
*
53458 TAAATTA-TATAAATAA
1 T-AATTATTATAATTAA
*
53474 TTATT-TTATAATTA
1 TAATTATTATAATTA
53488 TTTGTTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTATTATAATTAA
Found at i:53692 original size:20 final size:22
Alignment explanation
Indices: 53669--53729 Score: 63
Period size: 25 Copynumber: 2.7 Consensus size: 22
53659 ATTTTAATAA
53669 TTATAAAATAATTAT-TA-TAT
1 TTATAAAATAATTATATATTAT
*
53689 TTATATAATAAATTATATATTAT
1 TTATAAAAT-AATTATATATTAT
53712 TAATATATAAATAATTAT
1 T--TATA-AAATAATTAT
53730 CAAATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
20 8 0.24
21 6 0.18
22 2 0.06
23 4 0.12
25 10 0.30
26 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTATAAAATAATTATATATTAT
Found at i:53705 original size:18 final size:18
Alignment explanation
Indices: 53682--53716 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
53672 TAAAATAATT
53682 ATTATAT-TTATATAATAA
1 ATTATATATTAT-TAATAA
53700 ATTATATATTATTAATA
1 ATTATATATTATTAATA
53717 TATAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTATATATTATTAATAA
Found at i:53717 original size:23 final size:20
Alignment explanation
Indices: 53678--53729 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
53668 ATTATAAAAT
*
53678 AATTATTATATTTATATAATA
1 AATTATTATATTAATAT-ATA
53699 AATTATATATTATTAATATATA
1 AATTAT-TA-TATTAATATATA
*
53721 AATAATTAT
1 AATTATTAT
53730 CAAATAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.04
21 8 0.30
22 10 0.37
23 8 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTATTATATTAATATATA
Found at i:54297 original size:181 final size:182
Alignment explanation
Indices: 53954--54366 Score: 444
Period size: 182 Copynumber: 2.3 Consensus size: 182
53944 CGATAAATAG
* * * * *
53954 ATTTAGTTTTTTAAATCTCTTAGTCACTAATTTTTTAAATGTTAATAAATTAGTATTATTTTATT
1 ATTTAGTTTTTTAAATCTCTTACTCACTAATTGTTGAAATATTAATAAATTAGTATTATTTTAAT
** * * * * *
54019 TTGAATAAGCTTGTATGAACTAAAATAATTATTTTATGACTAAACAAAAGGTCAAAATGATTTGA
66 CCGAATAAGCTTATATGAACAAAAACAACTATTTTATGACTAAACAAAAGATCAAAATGATTTGA
** *
54084 AATAGATAATTGTTTTAATAGTCTTAACTATTTGAACTAGTTTGGCAAACAC
131 AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTGGCAAACAC
* * * *
54136 ATTTA-TTTTTTAAAATCTCTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTTAA
1 ATTTAGTTTTTT-AAATCTCTTACTCACTAATTGTTGAAATATTAATAAATTAGTATTATTTTAA
* *
54200 TCCGAATAAGCTTATATGAA-AAGAAACAACTATTTTGTGAC-AAA-ATAAAGATCATAATG-TT
65 TCCGAATAAGCTTATATGAACAA-AAACAACTATTTTATGACTAAACA-AAAGATCAAAATGATT
* * * *
54261 TTAAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTA-TTTCGGAAAATAG
128 TGAA-ATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTT-GGCAAACAC
* * * * * * *
54317 ATTTAG-TCTTTAAATCCCTTATTAATTACTTTTTGAAATATTAATAAATT
1 ATTTAGTTTTTTAAATCTCTTACTCACTAATTGTTGAAATATTAATAAATT
54367 CATTTTATTA
Statistics
Matches: 192, Mismatches: 33, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
180 41 0.21
181 71 0.37
182 80 0.42
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (182 bp):
ATTTAGTTTTTTAAATCTCTTACTCACTAATTGTTGAAATATTAATAAATTAGTATTATTTTAAT
CCGAATAAGCTTATATGAACAAAAACAACTATTTTATGACTAAACAAAAGATCAAAATGATTTGA
AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTTGGCAAACAC
Found at i:54847 original size:181 final size:181
Alignment explanation
Indices: 54512--55977 Score: 1111
Period size: 181 Copynumber: 8.1 Consensus size: 181
54502 TAAAAAAATA
* * * * ** * * *
54512 ATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAGTTTGGTAGATAAATTTGTT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATT
** * * *
54577 TTTTAAATCTCTTTGTTATTAATTTTTGGAATATTATTATATTAGTATTATTTTATTTCGAATAA
66 TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
** * * *
54642 GCTTAAATGAA-CAAAAATAATTGTTTTATGACAAAACAAAATGTTATAATG
131 GCTTGTAT-AATAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
* * * * * ** ** *
54693 ATTTGAAGTATACAATTGTTCAAATATTCATAACTATTTAAACTAATTTGGTAAACAGATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATT
* * * *
54758 TTGTAAATCTCTTACATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTCAAATAA
66 TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
* * * * *
54823 ACTTGTATAATAAAAAACAATTGTTATATGACCAAACAAAATGTAATAATG
131 GCTTGTATAATAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
** * * * * *
54874 ATTTGAAATAGATAATTGTTGGAAT-GACCATAATTATTTGAACTGATAT-GGTAAACAAATTCA
1 ATTTGAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAACTGGT-TCAGTAAACAAATTTA
* * * * *
54937 CTTTTTAAATCACATATTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTTATTTTGAA
64 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTA-TTTTATTTCGAA
** * * * * * * *
55002 TAAATTTGTATGAACT--GAAACCATTGTTTTGTGACAAAACAAAAGATCAAAACG
128 TAAGCTTGTAT-AA-TAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
** * * * * * *
55056 ATTTTCAATAGACAATTGTTCAAATAGTCA-AATTATTTGAATTTGTTCAAT-AA-AAATAT-TT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATT
** * * *
55117 TTTTAAA-CTCTTGTTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGGATAA
66 TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
* * ** * *
55181 GTTTTTATGAACT--AAAACAATTACTTTATGTCAAAACAAAAGGTCATAATG
131 GCTTGTAT-AA-TAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
* * * * * * * * * *
55232 ATTTTAAATATG-TGATTATTCAAACAGTTATAACAATTTAAATTTGTTCAATAAACAAATTTAT
1 ATTTGAAATA-GATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTAT
* * * * *
55296 TTTTTCAAATCTTTTGCTTATTAATTTTTTG-AATGTTAATAAATTTAG-ATTATTTTATTCCAA
65 TTTTT-AAATCTCTTACTTATTAA-TTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCGA
* * * * * ** * **
55359 ATAAGCATGTA-AGATATAAAACAAATATTTTATGACTAAACGTAAGATTGGAATG
127 ATAAGCTTGTATA-ATAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
* * * ** * * * *
55414 ATTTGAAATAGATAATTATCCTAATAGTTTTAACTATTTGAATTGGTTCAGCAAAAAAATTTCTT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATT
* * **
55479 TTTTAAA--TC-T-CTTATTAAGTTTTGAAATATTATTAAATT-GATATTATTTT-TAACTGAAT
66 TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAG-TATTATTTTATTTC-GAAT
* * * * *
55538 AAGCTTCTATGATAAGAAATAATTGTTTTATGACAAAACAAAA-ATCT-TAATG
129 AAGCTTGTATAATAAAAAACAATTGTTTTATGACAAAACAAAAGGT-TATAATG
* * * *
55590 ATTTGAGATTGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTATC
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTAT-
* * * * *
55655 TTTTTAAATCTCTTACTCATTAACTTTTGAAATATTAAAAAATTAGTAATATTTTATTTTGAATA
65 TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
55720 AGCTTGTATGATCAAAAACAAATATTTTATGACAAAACAAAAGGTCATAATG
130 AGCTTGTATAATAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
* ** * * * * * *
55772 ATTTGAAACAGATAATCATTCAAAT-GGCAATAATTATTTTAATTGATTCAGTAAACAATTTTA-
1 ATTTGAAATAGATAATTGTTCAAATAGTC-ATAACTATTTGAACTGGTTCAGTAAACAAATTTAT
* * * * ***
55835 TTTTTAAATTTCTTACTTA-TCATTTTAGGAAATATTAATAAATTAGTATTATTTTATTCCCTCT
65 TTTTTAAATCTCTTACTTATTAATTTT-TGAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * *
55899 AAGCTTGTAT--TAACTTAAATAATTGTTTTATGACAAATCAAAAGGTTATAATG
129 AAGCTTGTATAATAA--AAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
* *
55952 ATTCT-AAAAAGAAAAATTGTTCAAAT
1 ATT-TGAAATAG-ATAATTGTTCAAAT
55978 GGTAAACAAA
Statistics
Matches: 1023, Mismatches: 220, Indels: 84
0.77 0.17 0.06
Matches are distributed among these distances:
175 1 0.00
176 142 0.14
177 126 0.12
178 13 0.01
179 17 0.02
180 110 0.11
181 351 0.34
182 249 0.24
183 13 0.01
184 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAGTAAACAAATTTATT
TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
GCTTGTATAATAAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATG
Found at i:55454 original size:540 final size:537
Alignment explanation
Indices: 54519--55894 Score: 1302
Period size: 540 Copynumber: 2.6 Consensus size: 537
54509 ATAATTTAAA
* * * * *** * * *
54519 ATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAGTTTGGTAGATAAATT-TGTTTTTTAA
1 ATAGACAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTAT-TTTTTTAA
* ** * * *
54583 ATCTCTTTGTTATTAATTTTTGGAATATTATTATATTAGTATTATTTTATTTCGAATAAGCTTAA
65 ATCTCTTT-TTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGAATAAGCTTAT
* * * * * *
54648 ATGAACAAAAATAATTGTTTTATGACAAAACAAAATGTTATAATGATTTGAAGTATACAATTGTT
129 ATGAACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATATACAATTATT
* * *** *
54713 CAAATATTCATAACTATTTAAACTAATTTGGTAAACAGATTTATTTTGTAAATCTCTTACATATT
194 CAAACATTCATAACAATTTAAACTAATTCAATAAACAAATTTATTTTGTAAATCTCTTACATATT
* *
54778 AATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATAATAAAAAACAA
259 AATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAATAAACATGTATAATAAAAAACAA
* * * * ** *
54843 TTGTTATATGACCAAACAAAATGTAATAATGATTTGAAATAGATAATTGTTGGAATGACCATAAT
324 ATATTATATGACCAAACAAAATGTAAGAATGATTTGAAATAGATAATTATCCGAATGACCATAAC
* * * * *
54908 TATTTGAACTGATAT-GGTAAACAAA-TTCACTTTTTAAATCACATATTTATTAATTTTTGAAAT
389 TATTTGAACTGAT-TCAGCAAAAAAATTTC-CTTTTTAAAT--C-T-CTTATTAAGTTTTGAAAT
** * * * * *
54971 ATTAATAAATT-AGTATTATTTTTATTTTGAATAAATTTGTATGA-ACTGAAACCATTGTTTTGT
448 ATTAATAAATTGA-TATTATTTTTA-ACTGAATAAACTTCTATGATA-AGAAACAATTGTTTTAT
55034 GACAAAACAAAAGATCAAAACGATTTTCA-
510 GACAAAACAAAA-ATCAAAACGA-TTTCAG
* * *
55063 ATAGACAATTGTTCAAATAGTCA-AATTATTTGAATTTGTTCAATAAA-A-A-TATTTTTTTAAA
1 ATAGACAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTATTTTTTTAAA
* * *
55124 -CTCTTGTTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGGATAAGTTTTTA
66 TCTCTT-TTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGAATAAGCTTATA
* * * * ***
55188 TGAACTAAAACAATTACTTTATGTCAAAACAAAAGGTCATAATGATTTTAAATATGTGATTATTC
130 TGAACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATATACAATTATTC
* ** * * * *
55253 AAACAGTT-ATAACAATTTAAATTTGTTCAATAAACAAATTTATTTTTTCAAATCTTTTGCTTAT
195 AAACA-TTCATAACAATTTAAACTAATTCAATAAACAAATTTATTTTGT-AAATCTCTTACATAT
* * *
55317 TAATTTTTTGAATG-TTAATAAATTTAG-ATTATTTTATTCCAAATAAGCATGTA-AGATATAAA
258 TAA-TTTTTGAAAGATTAATAAA-TTAGTATTATTTTATTCCAAATAAACATGTATA-ATAAAAA
* * * * *
55379 ACAAATATTTTATGACTAAACGTAAGAT-T-GGAATGATTTGAAATAGATAATTATCCTAAT-AG
320 ACAAATATTATATGACCAAAC--AAAATGTAAGAATGATTTGAAATAGATAATTATCCGAATGA-
*** * * *
55441 TTTTAACTATTTGAATTGGTTCAGCAAAAAAATTTCTTTTTTAAATCTCTTATTAAGTTTTGAAA
382 CCATAACTATTTGAACTGATTCAGCAAAAAAATTTCCTTTTTAAATCTCTTATTAAGTTTTGAAA
* * *
55506 TATTATTAAATTGATATTATTTTTAACTGAATAAGCTTCTATGATAAGAAATAATTGTTTTATGA
447 TATTAATAAATTGATATTATTTTTAACTGAATAAACTTCTATGATAAGAAACAATTGTTTTATGA
** * *
55571 CAAAACAAAAATCTTAATGATTTGAG
512 CAAAACAAAAATCAAAACGATTTCAG
* * *
55597 ATTGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTATCTTTTTAA
1 ATAGACAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATA-TTATTTTTTTAA
* * * * *
55662 ATCTCTTACTCATTAACTTTTGAAATATTAAAAAATTAGTAATATTTTATTTTGAATAAGCTTGT
65 ATCTCTT-TTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGAATAAGCTTAT
* * * * * *
55727 ATGATCAAAAACAAATATTTTATGACAAAACAAAAGGTCATAATGATTTGAAACAGATAATCATT
129 ATGAACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATATACAATTATT
* ** * * * * * * *
55792 C-AA-ATGGCAATAATTATTTTAATTGATTCAGTAAACAATTTTATTTT-TAAATTTCTTACTTA
194 CAAACAT-TC-ATAACAATTTAAACTAATTCAATAAACAAATTTATTTTGTAAATCTCTTACATA
* * *
55854 -TCATTTTAGGAAATATTAATAAATTAGTATTATTTTATTCC
257 TTAATTTT-TGAAAGATTAATAAATTAGTATTATTTTATTCC
55895 CTCTAAGCTT
Statistics
Matches: 678, Mismatches: 127, Indels: 60
0.78 0.15 0.07
Matches are distributed among these distances:
533 4 0.01
534 28 0.04
535 60 0.09
536 43 0.06
537 13 0.02
538 34 0.05
539 157 0.23
540 278 0.41
541 19 0.03
542 5 0.01
543 17 0.03
544 20 0.03
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (537 bp):
ATAGACAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTATTTTTTTAAA
TCTCTTTTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGAATAAGCTTATAT
GAACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATATACAATTATTCA
AACATTCATAACAATTTAAACTAATTCAATAAACAAATTTATTTTGTAAATCTCTTACATATTAA
TTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAATAAACATGTATAATAAAAAACAAAT
ATTATATGACCAAACAAAATGTAAGAATGATTTGAAATAGATAATTATCCGAATGACCATAACTA
TTTGAACTGATTCAGCAAAAAAATTTCCTTTTTAAATCTCTTATTAAGTTTTGAAATATTAATAA
ATTGATATTATTTTTAACTGAATAAACTTCTATGATAAGAAACAATTGTTTTATGACAAAACAAA
AATCAAAACGATTTCAG
Found at i:55774 original size:358 final size:353
Alignment explanation
Indices: 54512--55892 Score: 1062
Period size: 358 Copynumber: 3.8 Consensus size: 353
54502 TAAAAAAATA
* * * * * *** * * *
54512 ATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAGTTTGGTAGATAAATTTGTT
1 ATTTGAAATTGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACAAATTTATT
** * ** *
54577 TTTTAAATCTCTTTGTTATTAATTTTTGGAATATTATTATATTAGTATTATTTTATTTCGAATAA
66 TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTCGAATAA
** * * * * * *
54642 GCTTAAATGAACAAAAATAATTGTTTTATGACAAAACAAAATG-TTATAATGATTTGAAGTATAC
131 GCTTGTATGAACAAAAACAAATATTTTATGACAAAACAAAA-GATCATAATGATTTGAAATAGAC
* * * ** * * *
54706 AATTGTTCAAATA-TTCATAACTATTTAAACTAATTTGGTAAACAGATTTATTTTGTAAATCTCT
195 AATTGTTCAAATAGTT-ATAACTATTTGAATTAGTTCAG-AAAAAAATTT-TTTTTTAAATCTC-
* * * * *
54770 TACATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATAATA
256 T---TATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT-GAATAAGCTTCTATGAT-
* * *
54835 AAAAACAATTGTTATATGACCAAAC-AAAATGTAATAATG
316 AAAAACAATTGTTTTATGACAAAACAAAAATCT--TAATG
* ** * * * ** *
54874 ATTTGAAATAGATAATTGTTGGAAT-GACCATAATTATTTGAACTGATAT-GGTAAACAAATTCA
1 ATTTGAAATTGATAATTGTTCAAATAG-TCATAACTATTTGAACTGGT-TCAATAAACAAATTTA
* * * * * *
54937 CTTTTTAAATCACATATTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTTATTTTGAA
64 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAAAAATTAGTATTA-TTTTATTTCGAA
** ** * * * * * * **
55002 TAAATTTGTATGAACTGAAACCATTGTTTTGTGACAAAACAAAAGATCAAAACGATTTTCAATAG
128 TAAGCTTGTATGAACAAAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAATAG
* * * * *
55067 ACAATTGTTCAAATAGTCA-AATTATTTGAATTTGTTCA-ATAAAAATATTTTTTTAAACTCTTG
193 ACAATTGTTCAAATAGTTATAACTATTTGAATTAGTTCAGAAAAAAATTTTTTTTTAAA-TC-T-
* * * * *
55130 TTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTTGGATAAGTTTTTATGA-ACT
255 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCTTCTATGATA--
** * * *
55194 AAAACAATTACTTTATGTCAAAACAAAAGGTCATAATG
317 AAAACAATTGTTTTATGACAAAACAAAA-ATCTTAATG
* * * * * * * * *
55232 ATTTTAAATATG-TGATTATTCAAACAGTTATAACAATTTAAATTTGTTCAATAAACAAATTTAT
1 ATTTGAAAT-TGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACAAATTTAT
* * * * * *
55296 TTTTTCAAATCTTTTGCTTATTAATTTTTTG-AATGTTAATAAATTTAG-ATTATTTTATTCCAA
65 TTTTT-AAATCTCTTACTTATTAA-TTTTTGAAATATTAA-AAAATTAGTATTATTTTATTTCGA
* * * * ** ***
55359 ATAAGCATGTAAGATA-TAAAACAAATATTTTATGACTAAACGTAAGATTGGAATGATTTGAAAT
127 ATAAGCTTGTATGA-ACAAAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAAT
* * * * * *
55423 AGATAATTATCCTAATAGTTTTAACTATTTGAATTGGTTCAGCAAAAAAATTTCTTTTTTAAATC
191 AGACAATTGTTCAAATAGTTATAACTATTTGAATTAGTTCAG-AAAAAAATTT-TTTTTTAAATC
* * **
55488 TCTTATTAAGTTTTGAAATATTATTAAATT-GATATTATTTTTAACTGAATAAGCTTCTATGATA
254 TCTTATTAATTTTTGAAATATTAATAAATTAG-TATTA-TTTTATTTGAATAAGCTTCTATGATA
*
55552 AGAAATAATTGTTTTATGACAAAACAAAAATCTTAATG
317 A-AAACAATTGTTTTATGACAAAACAAAAATCTTAATG
* *
55590 ATTTGAGATTGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTATC
1 ATTTGAAATTGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACAAATTTAT-
* * * *
55655 TTTTTAAATCTCTTACTCATTAACTTTTGAAATATTAAAAAATTAGTAATATTTTATTTTGAATA
65 TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTCGAATA
* * * *
55720 AGCTTGTATGATCAAAAACAAATATTTTATGACAAAACAAAAGGTCATAATGATTTGAAACAGAT
130 AGCTTGTATGAACAAAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGAC
** * ** * * * * *
55785 AATCATTCAAATGGCAATAATTATTTTAATT-GATTCAGTAAACAATTTTATTTTTAAATTTCTT
195 AATTGTTCAAATAGTTATAACTATTTGAATTAG-TTCAGAAAAAAATTTT-TTTTTAAATCTCTT
*
55849 ACTTATCATTTTAGGAAATATTAATAAATTAGTATTATTTTATT
258 A-TTA--ATTTT-TGAAATATTAATAAATTAGTATTATTTTATT
55893 CCCTCTAAGC
Statistics
Matches: 788, Mismatches: 191, Indels: 82
0.74 0.18 0.08
Matches are distributed among these distances:
356 2 0.00
357 38 0.05
358 359 0.46
359 130 0.16
360 37 0.05
361 33 0.04
362 113 0.14
363 75 0.10
364 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (353 bp):
ATTTGAAATTGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACAAATTTATT
TTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAAAAATTAGTATTATTTTATTTCGAATAA
GCTTGTATGAACAAAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGACA
ATTGTTCAAATAGTTATAACTATTTGAATTAGTTCAGAAAAAAATTTTTTTTTAAATCTCTTATT
AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTGAATAAGCTTCTATGATAAAAACAATT
GTTTTATGACAAAACAAAAATCTTAATG
Found at i:57133 original size:26 final size:26
Alignment explanation
Indices: 57066--57129 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
57056 TATTTTATAG
*
57066 TATTAATATAAAAATTATAAATATTAT
1 TATTAATAT-AATATTATAAATATTAT
*
57093 TATTAATATCATATTATAAATA-TAT
1 TATTAATATAATATTATAAATATTAT
57118 TATATAAT-TAAT
1 TAT-TAATATAAT
57130 TATTTGTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 9 0.27
26 15 0.45
27 9 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
TATTAATATAATATTATAAATATTAT
Found at i:57176 original size:36 final size:36
Alignment explanation
Indices: 57106--57176 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
57096 TAATATCATA
* *
57106 TTATAAATATATTATATAATTAATTATTTGTAATAT
1 TTATAAATATATTATATAATTAACTATATGTAATAT
*
57142 TTATAAATATA-TA-ATGATTTAACTATATGTTAATA
1 TTATAAATATATTATAT-AATTAACTATATG-TAATA
57177 AATACAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
34 2 0.07
35 12 0.40
36 16 0.53
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (36 bp):
TTATAAATATATTATATAATTAACTATATGTAATAT
Found at i:58211 original size:10 final size:10
Alignment explanation
Indices: 58196--58241 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
58186 AATATAGAAT
58196 TAATTAATAA
1 TAATTAATAA
58206 TAATTAATAA
1 TAATTAATAA
58216 TGATATTAATAA
1 T-A-ATTAATAA
* *
58228 TAAATAATAT
1 TAATTAATAA
58238 TAAT
1 TAAT
58242 ATTTAGTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 20 0.65
11 2 0.06
12 9 0.29
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (10 bp):
TAATTAATAA
Found at i:58237 original size:16 final size:15
Alignment explanation
Indices: 58200--58242 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
58190 TAGAATTAAT
*
58200 TAATAATAATTAATAA
1 TAATATTAA-TAATAA
*
58216 TGATATTAATAATAAA
1 TAATATTAATAAT-AA
58232 TAATATTAATA
1 TAATATTAATA
58243 TTTAGTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TAATATTAATAATAA
Found at i:58243 original size:22 final size:22
Alignment explanation
Indices: 58198--58270 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
58188 TATAGAATTA
* * *
58198 ATTAATAATAATTAATAATGAT
1 ATTAATAATAAATAATATTAAT
58220 ATTAATAATAAATAATATTAAT
1 ATTAATAATAAATAATATTAAT
*
58242 ATTTAGTTATAAT-AATAATATTATT
1 A-TTA---ATAATAAATAATATTAAT
58267 ATTA
1 ATTA
58271 TTATTAGGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
22 20 0.47
23 3 0.07
24 3 0.07
25 12 0.28
26 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (22 bp):
ATTAATAATAAATAATATTAAT
Found at i:58384 original size:22 final size:24
Alignment explanation
Indices: 58336--58390 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
58326 ATAATAGTTT
*
58336 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
58360 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
58382 ATAACTATT
1 ATAAATATT
58391 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:58947 original size:183 final size:176
Alignment explanation
Indices: 58724--59191 Score: 503
Period size: 183 Copynumber: 2.6 Consensus size: 176
58714 ATAATTGTTT
* * * *
58724 GAACAATTTTTTATTTCTAATAGTTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTAGTCA
1 GAACAATTATCTATTTCAAATAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCT-GTCA
* * * *
58789 TACAAGTTTATTCAAAATAAAATAATACTACTTTATTACTATTTTGCAAATTAATAGGTAGGAGA
65 TACAAGATTATTCAAAATAAAATAATACTACTTTATTAATATTTTGAAAACTAATA---A-GAGA
* *
58854 TTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTCATATGTCCATTA
126 TTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAGT--TATGACCATTA
* * *
58907 GAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCGGTTCA
1 GAACAATTATCTATTTCAAATAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTG-TCA
* **
58972 CAC-AGAATTATTCAAAATAAAATAATTTTGAC-TTATTAATATTTTGAAAACTAATAAGAGATT
65 TACAAG-ATTATTCAAAATAAAATAATACT-ACTTTATTAATATTTTGAAAACTAATAAGAGATT
* * * * *
59035 TAAAAACTAAATCTATTTACTAAACCAGTTCAAATAGTTATGACTATTT
128 TAAAAAATAAATCTATTTACCAAACAAGTTCAAATAGTTATGACCATTA
* * * * * *
59084 GAACAATTATCTATCTCAAATCA-TAATGATC-TTTATTTTGTCATACAACAATTGCTTCCTTTC
1 GAACAATTATCTATTTCAAAT-AGTTATGATCTTTTGTTTTGTCATAAAACAATTG-TTTCTGTC
* * * * * *
59147 ATACAAGCTTATTCGAATTAAAATGATACTAATTTAATAATATTT
64 ATACAAGATTATTCAAAATAAAATAATACTACTTTATTAATATTT
59192 CAAAAATTAA
Statistics
Matches: 239, Mismatches: 39, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
175 1 0.00
176 54 0.23
177 39 0.16
179 40 0.17
180 1 0.00
182 3 0.01
183 99 0.41
184 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (176 bp):
GAACAATTATCTATTTCAAATAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTGTCAT
ACAAGATTATTCAAAATAAAATAATACTACTTTATTAATATTTTGAAAACTAATAAGAGATTTAA
AAAATAAATCTATTTACCAAACAAGTTCAAATAGTTATGACCATTA
Found at i:59252 original size:156 final size:157
Alignment explanation
Indices: 59061--59358 Score: 347
Period size: 157 Copynumber: 1.9 Consensus size: 157
59051 TTACTAAACC
* **
59061 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATGAT-CTTTAT-TTT-
1 AGTTCAAATAGTTAAGACTATACGAACAATTATCTATCTCAAATCATAAT-ATCCTTT-TGTTTA
* * ** *
59123 GTCATACAACAATTGCTTCCTTTCATACAAGCTTA-TTCGAATTAAAATGATACTAATTTAATAA
64 GTCATAAAACAATTACTTCAGTTCATACAAGCTTATTTCGAA-TAAAATAATACTAATTTAATAA
*
59187 TATTTC-AAAAATTAATATGTTAACTGAACT
128 CA-TTCAAAAAATTAATATGTTAACTGAACT
* * **
59217 AGTTCAAATAGTTAAGACTA-ACGAAATAATTATCTATTTCAAATCATTCTATCCTTTTGTTTAG
1 AGTTCAAATAGTTAAGACTATACG-AACAATTATCTATCTCAAATCATAATATCCTTTTGTTTAG
* * * * *
59281 TCATAAAACAATTATTTTAGTTCATACAATCTTATTTGGAATAAAATAATACTAATTTATTAACA
65 TCATAAAACAATTACTTCAGTTCATACAAGCTTATTTCGAATAAAATAATACTAATTTAATAACA
59346 TTCAAAAAATTAA
130 TTCAAAAAATTAA
59359 AGCAAGAGAT
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
155 4 0.03
156 51 0.43
157 58 0.49
158 5 0.04
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (157 bp):
AGTTCAAATAGTTAAGACTATACGAACAATTATCTATCTCAAATCATAATATCCTTTTGTTTAGT
CATAAAACAATTACTTCAGTTCATACAAGCTTATTTCGAATAAAATAATACTAATTTAATAACAT
TCAAAAAATTAATATGTTAACTGAACT
Found at i:59764 original size:19 final size:19
Alignment explanation
Indices: 59742--59779 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
59732 ATTTAAATTA
59742 ATTAATTAATATAATATAT
1 ATTAATTAATATAATATAT
* *
59761 ATTATTTAATATATTATAT
1 ATTAATTAATATAATATAT
59780 TGTAAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTAATTAATATAATATAT
Found at i:59815 original size:24 final size:24
Alignment explanation
Indices: 59788--59836 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
59778 ATTGTAAATG
* *
59788 ATAT-TAATTATTAATATTAATAAA
1 ATATGTAATAATTAA-ATTAACAAA
59812 ATATGTAATAATTAAATTAACAAA
1 ATATGTAATAATTAAATTAACAAA
59836 A
1 A
59837 GGTCATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
ATATGTAATAATTAAATTAACAAA
Found at i:60219 original size:22 final size:22
Alignment explanation
Indices: 60187--60229 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
60177 TATAAACAAT
*
60187 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
60209 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
60230 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:60443 original size:27 final size:27
Alignment explanation
Indices: 60388--60443 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
60378 ATTATTAATG
*
60388 TATTAAAATAATAATTAATAAATTGAT
1 TATTAAAATAATAATTAAAAAATTGAT
* *
60415 TATTAAAATATTCATTAAAATAATT-AT
1 TATTAAAATAATAATTAAAA-AATTGAT
60442 TA
1 TA
60444 ATATTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
TATTAAAATAATAATTAAAAAATTGAT
Found at i:60925 original size:15 final size:16
Alignment explanation
Indices: 60905--60948 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
60895 TAAAATCTTA
60905 ATTATTAATATTTTAC-
1 ATTATTAATATTTT-CT
60921 A-TATTAATATATTTCT
1 ATTATTAATAT-TTTCT
60937 ATTATTAATATT
1 ATTATTAATATT
60949 AACAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 10 0.40
16 6 0.24
17 9 0.36
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATTAATATTTTCT
Found at i:61266 original size:17 final size:18
Alignment explanation
Indices: 61244--61277 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
61234 AATACAAATT
*
61244 ATTATTATTTA-ATTTAA
1 ATTATTAATTATATTTAA
61261 ATTATTAATTATATTTA
1 ATTATTAATTATATTTA
61278 TTAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTAATTATATTTAA
Found at i:61898 original size:176 final size:178
Alignment explanation
Indices: 61589--62071 Score: 467
Period size: 176 Copynumber: 2.7 Consensus size: 178
61579 TATTTCAATT
* * * * * ** * *
61589 CATACAAGCTTATTCAGAATAAATTAATACTAATTTATTAACATCTGGAAAATTAATAAGA-AAG
1 CATACAAGCTTAATCAAAATAAAATAATACTAATTGATTAATAT-TTCAAAAAT-AT-AGATAAC
* * * ** * * * ** *
61653 AGATTTAAAAAATAAATCTGTTTGCTGAA-CAAGTTCAAATAGTTATTATTATTTGAATAATTGT
63 AAATTTAAAAAATAAATCTATTTACCAAATC-AGTTAAAATAATTATGACCATTTGAATAATTAT
*
61717 CTATTTTAAAACATTATAACCTTTTAATTTGTCATAAAACAATTGTTTCAGTTA
127 CTATTTCAAAACATTATAACCTTTTAATTTGTCATAAAACAATTGTTT--GTTA
** * ** *
61771 -ATACAAGCTTAGAT-GGAATAAAATAATACTACTT-ATTAATATTTCCTAAAT-TA-ATAAGAA
1 CATACAAGCTTA-ATCAAAATAAAATAATACTAATTGATTAATATTTCAAAAATATAGATAACAA
* *
61831 ATTTAAAAAATAAATCTATTTACCAAATTAGTTAAAATAATTATGGCCATTTGAATAATTATCTA
65 ATTTAAAAAATAAATCTATTTACCAAATCAGTTAAAATAATTATGACCATTTGAATAATTATCTA
* * * * *
61896 TTTCAAATCATTATGACCTTTTATTTTGTCATAATACAATTGTTTTTTA
130 TTTCAAAACATTATAACCTTTTAATTTGTCATAAAACAATTGTTTGTTA
* *
61945 TCATACAAGCTTATTCAAAATAAAATAATACTAATTGATTAATATTTCAAAAATAATAGGTAACA
1 -CATACAAGCTTAATCAAAATAAAATAATACTAATTGATTAATATTTCAAAAAT-ATAGATAACA
* * * * *
62010 AATTTAAACAATAAATCTGTTTACCAAATCAGTTTAAATAATTATGACTATTTGAACAATTA
64 AATTTAAAAAATAAATCTATTTACCAAATCAGTTAAAATAATTATGACCATTTGAATAATTA
62072 CCAATCTCAA
Statistics
Matches: 247, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
174 3 0.01
175 2 0.01
176 125 0.51
177 16 0.06
179 6 0.02
180 66 0.27
181 28 0.11
182 1 0.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (178 bp):
CATACAAGCTTAATCAAAATAAAATAATACTAATTGATTAATATTTCAAAAATATAGATAACAAA
TTTAAAAAATAAATCTATTTACCAAATCAGTTAAAATAATTATGACCATTTGAATAATTATCTAT
TTCAAAACATTATAACCTTTTAATTTGTCATAAAACAATTGTTTGTTA
Found at i:62273 original size:17 final size:17
Alignment explanation
Indices: 62236--62273 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
62226 AATAACTAAT
*
62236 TATTAAAAAATTGTATT
1 TATTAAAAAATTGTATA
62253 TATTAAAATAATT-TATA
1 TATTAAAA-AATTGTATA
62270 TATT
1 TATT
62274 TATTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATTAAAAAATTGTATA
Found at i:62388 original size:16 final size:16
Alignment explanation
Indices: 62348--62385 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
62338 TGACGTATTA
62348 ATTTAATT-AT-ATAT
1 ATTTAATTAATAATAT
62362 ATTTAATTAATAATAT
1 ATTTAATTAATAATAT
62378 ATTATAAT
1 ATT-TAAT
62386 AATTTCTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 2 0.10
16 7 0.33
17 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTAATTAATAATAT
Found at i:62801 original size:15 final size:15
Alignment explanation
Indices: 62783--62821 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
62773 AAATATATTT
62783 ATACTAATATAAATA
1 ATACTAATATAAATA
* *
62798 ATACTAATTTATATA
1 ATACTAATATAAATA
*
62813 ATAATAATA
1 ATACTAATA
62822 ATTTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (15 bp):
ATACTAATATAAATA
Found at i:62817 original size:18 final size:19
Alignment explanation
Indices: 62789--62827 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
62779 ATTTATACTA
*
62789 ATATAAATAATACTAATTT
1 ATATAAATAATAATAATTT
62808 ATAT-AATAATAATAATTT
1 ATATAAATAATAATAATTT
62826 AT
1 AT
62828 TATTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATAAATAATAATAATTT
Found at i:63013 original size:13 final size:13
Alignment explanation
Indices: 62995--63119 Score: 57
Period size: 13 Copynumber: 9.5 Consensus size: 13
62985 TATTTCATAT
62995 TTAAATATTATAA
1 TTAAATATTATAA
63008 TTAAATATTAT-A
1 TTAAATATTATAA
*
63020 TTAATTTAATTATTAAA
1 TTAA-AT-ATTA-T-AA
*
63037 TTAAATATT-TTA
1 TTAAATATTATAA
63049 -TATAATATTA-AA
1 TTA-AATATTATAA
* *
63061 -TAAA-AATATAG
1 TTAAATATTATAA
* *
63072 TTATATAATTACAA
1 TTAAAT-ATTATAA
*
63086 TTAAA-ATAGATAA
1 TTAAATAT-TATAA
*
63099 TTAAATATTTTAA
1 TTAAATATTATAA
63112 TTCAAATA
1 TT-AAATA
63120 GTAATTAAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 27
0.66 0.12 0.22
Matches are distributed among these distances:
10 3 0.04
11 5 0.06
12 20 0.24
13 26 0.31
14 19 0.23
15 4 0.05
16 1 0.01
17 5 0.06
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (13 bp):
TTAAATATTATAA
Found at i:63033 original size:17 final size:17
Alignment explanation
Indices: 62993--63040 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
62983 TTTATTTCAT
62993 ATTTAAATATT--A-TA
1 ATTTAAATATTAAATTA
*
63007 A-TTAAATATTATATTA
1 ATTTAAATATTAAATTA
*
63023 ATTTAATTATTAAATTA
1 ATTTAAATATTAAATTA
63040 A
1 A
63041 ATATTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 9 0.32
14 1 0.04
15 1 0.04
16 3 0.11
17 14 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAAATATTAAATTA
Found at i:63057 original size:24 final size:25
Alignment explanation
Indices: 62998--63080 Score: 78
Period size: 25 Copynumber: 3.1 Consensus size: 25
62988 TTCATATTTA
*
62998 AATATTATAATTAAATATTATATTAATTT
1 AATATTA-AATTAAATA-TAT-TT-ATAT
63027 AATTATTAAATTAAATAT-TTTATAT
1 AA-TATTAAATTAAATATATTTATAT
* *
63052 AATATTAAATAAAAATATAGTTATAT
1 AATATTAAAT-TAAATATATTTATAT
63078 AAT
1 AAT
63081 TACAATTAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
24 8 0.17
25 11 0.23
26 11 0.23
27 1 0.02
28 1 0.02
29 11 0.23
30 5 0.10
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
AATATTAAATTAAATATATTTATAT
Found at i:63516 original size:19 final size:20
Alignment explanation
Indices: 63494--63531 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
63484 TTATTTATAA
63494 ATTATTTAAAT-ATTTAATT
1 ATTATTTAAATAATTTAATT
*
63513 ATTATTTAATTAATTTAAT
1 ATTATTTAAATAATTTAAT
63532 AATTGTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTATTTAAATAATTTAATT
Found at i:63518 original size:11 final size:11
Alignment explanation
Indices: 63476--63535 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
63466 AACTAGTAAT
63476 TTTAATAATTA
1 TTTAATAATTA
63487 TTT-ATAAATTA
1 TTTAAT-AATTA
63498 TTT-A-AA-TA
1 TTTAATAATTA
*
63506 TTTAATTATTA
1 TTTAATAATTA
*
63517 TTTAAT--TAA
1 TTTAATAATTA
63526 TTTAATAATT
1 TTTAATAATT
63536 GTATAGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
8 5 0.12
9 11 0.28
10 3 0.08
11 21 0.52
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTAATAATTA
Found at i:63699 original size:16 final size:16
Alignment explanation
Indices: 63674--63724 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
63664 ATATAAATTA
63674 TTAA-TTATTAAATAT
1 TTAATTTATTAAATAT
63689 TTAATTTATTAATGATTAT
1 TTAATTTATTAA--A-TAT
63708 ATTAATTTATT-AATAT
1 -TTAATTTATTAAATAT
63724 T
1 T
63725 AATAAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 5 0.16
16 10 0.32
17 1 0.03
18 1 0.03
19 4 0.13
20 10 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TTAATTTATTAAATAT
Found at i:63701 original size:23 final size:22
Alignment explanation
Indices: 63663--63726 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
63653 TAATTTAACT
*
63663 AATA-TAAATTATTAATTATTA
1 AATATTAATTTATTAATTATTA
*
63684 AATATTTAATTTATTAATGATT-
1 AATA-TTAATTTATTAATTATTA
63706 -ATATTAATTTATTAA-TATTA
1 AATATTAATTTATTAATTATTA
63726 A
1 A
63727 TAAATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 3 0.08
20 12 0.33
21 7 0.19
23 14 0.39
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
AATATTAATTTATTAATTATTA
Found at i:63714 original size:20 final size:19
Alignment explanation
Indices: 63672--63725 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
63662 TAATATAAAT
63672 TATTAA-TTATTAA-A-TA
1 TATTAATTTATTAATATTA
63688 T-TTAATTTATTAATGATTA
1 TATTAATTTATTAAT-ATTA
63707 TATTAATTTATTAATATTA
1 TATTAATTTATTAATATTA
63726 ATAAATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
15 4 0.12
16 8 0.24
18 1 0.03
19 7 0.21
20 13 0.39
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TATTAATTTATTAATATTA
Found at i:64209 original size:180 final size:182
Alignment explanation
Indices: 64004--64503 Score: 498
Period size: 180 Copynumber: 2.8 Consensus size: 182
63994 TTATACTATT
* * * *
64004 TTATTTGAAATAAAATAAAACTAATTTAATAATATTCTAAAACTTATTAACCAAGAAAATTAAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCTAAAAATTAATAACCAAGAAAATTAAAA
* * * *
64069 AATAAATCTAATTGT-CGAACT-AGTTGAAATAGTTAAGACTAGAT-GAATGATTATCTATTTCA
66 AATAAAT-TAATT-TACCAAATCAGTTCAAATAGTTAAGACTA-ATAGAATAATTATCTATTTCA
* * * * *
64131 AATCGTTATGAA-CTTTTCTTTTGTTCTAAAACAATTGTTTT-GTTCATACAA-GC
128 AATCGTTAT-AATATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
* * * *
64184 TTATTTGGATTAAAATAATACTAATTTAATAATATT-TCAAAAATTAATAACTAAGAGATTTAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCT-AAAAATTAATAACCAAGAAAATTAAA
* * *
64248 AAATAAATTTATTTACCAAATCAGTTCAAATGGTTAAGACTATTAGAATAATTATCTATTTCAAA
65 AAATAAATTAATTTACCAAATCAGTTCAAATAGTTAAGACTAATAGAATAATTATCTATTTCAAA
*
64313 TCGTTCTAATATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
130 TCGTTATAATATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
* * * * * * * * *
64366 -TATTTAGAATAAATTAATACTAATTTAGTAACATTCAAAAAATTAATAA-AAATTAGATTTAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCTAAAAATTAATAACCAA-GAAAATT-AA
* * * ** * * * * *
64429 AAAATAAATTTATTTACCGAA-CAAGTACAAATAGTTATTACTATTTGAACAATTGTCTATTTTA
64 AAAATAAATTAATTTACCAAATC-AGTTCAAATAGTTAAGACTAATAGAATAATTATCTATTTCA
64493 AATCGTTATAA
128 AATCGTTATAA
64504 CCTTTATTAA
Statistics
Matches: 270, Mismatches: 39, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
178 1 0.00
179 12 0.04
180 132 0.49
181 58 0.21
182 67 0.25
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (182 bp):
TTATTTGGAATAAAATAATACTAATTTAATAATATTCTAAAAATTAATAACCAAGAAAATTAAAA
AATAAATTAATTTACCAAATCAGTTCAAATAGTTAAGACTAATAGAATAATTATCTATTTCAAAT
CGTTATAATATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
Found at i:65129 original size:6 final size:6
Alignment explanation
Indices: 65105--65207 Score: 52
Period size: 6 Copynumber: 16.8 Consensus size: 6
65095 TTTTATAAGG
** * *
65105 TATTAA TAGTTAA GGTTAA TATTAA T-TTAC TATTAA TATAAA TTATTAA
1 TATTAA TA-TTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA
* * * *
65154 TATTATAA TCTTTA TATTAA CTAATAA T-TTAA -ATTATA TAATAA -ATTAA
1 TA-T-TAA TATTAA TATTAA -TATTAA TATTAA TATTA-A TATTAA TATTAA
65203 TATTA
1 TATTA
65208 TAACTATTAA
Statistics
Matches: 71, Mismatches: 16, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
5 14 0.20
6 34 0.48
7 19 0.27
8 4 0.06
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (6 bp):
TATTAA
Found at i:65207 original size:18 final size:17
Alignment explanation
Indices: 65175--65209 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
65165 TTATATTAAC
*
65175 TAATAATTTAAATTATA
1 TAATAAATTAAATTATA
65192 TAATAAATTAATATTATA
1 TAATAAATTAA-ATTATA
65210 ACTATTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATAAATTAAATTATA
Found at i:65268 original size:15 final size:15
Alignment explanation
Indices: 65250--65324 Score: 61
Period size: 15 Copynumber: 5.1 Consensus size: 15
65240 TAGTATTTGA
65250 ATAATTATATAAATT
1 ATAATTATATAAATT
*
65265 ATAAAATATATAAAATT
1 AT-AATTATAT-AAATT
*
65282 ATAA-TA-ATAAAAT
1 ATAATTATATAAATT
65295 -TAATTATAT-AATT
1 ATAATTATATAAATT
*
65308 TTAAATTATAT-AATT
1 AT-AATTATATAAATT
65323 AT
1 AT
65325 TTATCATTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
12 3 0.06
13 9 0.18
14 5 0.10
15 17 0.34
16 9 0.18
17 7 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATTATATAAATT
Found at i:65371 original size:11 final size:11
Alignment explanation
Indices: 65355--65384 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
65345 TAGGTATCTA
*
65355 ATATAATTATG
1 ATATAATTACG
65366 ATATAATTACG
1 ATATAATTACG
65377 ATATAATT
1 ATATAATT
65385 GTGTAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (11 bp):
ATATAATTACG
Found at i:66741 original size:181 final size:178
Alignment explanation
Indices: 66366--66751 Score: 467
Period size: 181 Copynumber: 2.1 Consensus size: 178
66356 AATCACTTAG
*
66366 TTATTAATTTTTGGAATATTAATAAATTAGTTTTATTTTATTTTGAGTAACCTTGTATGAACTAA
1 TTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTTTGAGTAACCTTGTATGAACTAA
*
66431 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGACAATTGTTCAAATAGTT
65 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGACAA-T-TTCAAATAGTC
* * *
66496 GTAGCTATTTAAATTTATTTAGTAAATAAATTAATTTTTTTAAAGTTTTGC
128 ATAACTATTTAAATTTATTCAGTAAATAAATTAATTTTTTTAAAGTTTTGC
* ** * *
66547 TTATTAGTTTTTGAAATATTAATAAATTAGTATTATTTTATTTTG-GATAAGTTTTTATGAACTG
1 TTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTTTGAG-TAACCTTGTATGAACTA
* *
66611 AAACAATTGTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAAT-GAACAA-TTCAAATAGTC
64 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAG-ACAATTTCAAATAGTC
* * * ***
66674 ATAACTATTT-GATCTTGA-TCAGTAAATAGATTTATTTTTTCATACCTTTTTGC
128 ATAACTATTTAAAT-TT-ATTCAGTAAATAAATTAATTTTTT--TAAAGTTTTGC
*
66727 TTATTAATTTTTTGAATTTTAATAA
1 TTATTAA-TTTTTGAATATTAATAA
66752 TTAAAAATTA
Statistics
Matches: 177, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
177 2 0.01
178 39 0.22
179 1 0.01
180 27 0.15
181 108 0.61
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.46
Consensus pattern (178 bp):
TTATTAATTTTTGAATATTAATAAATTAGTATTATTTTATTTTGAGTAACCTTGTATGAACTAAA
ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGACAATTTCAAATAGTCATA
ACTATTTAAATTTATTCAGTAAATAAATTAATTTTTTTAAAGTTTTGC
Found at i:66787 original size:13 final size:15
Alignment explanation
Indices: 66757--66788 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
66747 AATAATTAAA
66757 AATTAAAAATATTTT
1 AATTAAAAATATTTT
66772 AATT-AAAATA-TTT
1 AATTAAAAATATTTT
66785 AATT
1 AATT
66789 TTTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTAAAAATATTTT
Found at i:66811 original size:14 final size:14
Alignment explanation
Indices: 66757--66823 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 14
66747 AATAATTAAA
*
66757 AATTAAAAATATTTT
1 AATTATAAATA-TTT
66772 AATTA-AAATATTT
1 AATTATAAATATTT
* * *
66785 AATTTTTATTATTT
1 AATTATAAATATTT
*
66799 AATTATCAATATTT
1 AATTATAAATATTT
66813 -ATTAATAAATA
1 AATT-ATAAATA
66824 AGCTACGAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
13 10 0.23
14 28 0.65
15 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (14 bp):
AATTATAAATATTT
Found at i:68656 original size:11 final size:11
Alignment explanation
Indices: 68640--68668 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
68630 ATTGCTTAGA
68640 TTAATTATATT
1 TTAATTATATT
68651 TTAATTATATT
1 TTAATTATATT
68662 TTAATTA
1 TTAATTA
68669 ACTATATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTAATTATATT
Found at i:69258 original size:181 final size:181
Alignment explanation
Indices: 68871--69766 Score: 840
Period size: 181 Copynumber: 5.0 Consensus size: 181
68861 ATAATCATTC
* * * ** * *
68871 TGACCTTTTGTTTAGTCATAAAATAATTGCTTCAACTCATAAATGCTTATTCGAAATAAAATAAT
1 TGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTCAAAATAAAATAAT
* * * * * * * *
68936 ACTAATTTATTAACATTCA-AAAAATTATTAACTAAGA-AATTAGAAAAA-AAATCAATTTACCG
66 ATTAATTTATTAATATT-ATAAAAATTAATAAGTAAGAGATTTA-AAAAATAAATTAGTTTATCG
* * * *
68998 AA-CAAGTTCAAATATTTTTTACTATTTGAACAATTATCTATTTAAAATCGTTA
129 AATCAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTA
* * *
69051 TGACCTTATATTTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTA-TCTAAAATAAAATAA
1 TGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTC-AAAATAAAATAA
* * * *
69115 TATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAATTAGTTTATCGA
65 TATTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTATCGA
* * * * *
69180 ATCAATTCAAATAATTATGGCCATTTAAACAATTATCTATTTCAAATCATTA
130 ATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTA
* * * * * *
69232 TGAACTTTTGTTTCGTCATAAAACAATTATTTTTCA--TCATACAAGCCTATTCAGAATAAAATA
1 TGACCTTTTGTTTTGTCATAAAACAA-T-TGTTTCAGTTCATAAAAGCTTATTCAAAATAAAATA
* *
69295 ATACTAATTTATTAATATT-TAAAAAATTAATAAGTAGGAGATTTAAAAAATAAATCT-GTTTAT
64 ATATTAATTTATTAATATTAT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TAGTTTAT
* * *
69358 CGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCCAATCGTTA
127 CGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTA
* * * * * *
69413 TAACTTTTTATTTTGTCATAAAACAATTATTT-ATCTTCATACAAGCTTATTCAAAATAAAATAA
1 TGACCTTTTGTTTTGTCATAAAACAATTGTTTCA-GTTCATAAAAGCTTATTCAAAATAAAATAA
* * * * * * *
69477 TATTAATCTAGTAATATTATGAAATTTAATAACTAATAGATTTAAAAAATAAATTTGTTTA-CTG
65 TATTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTATC-G
* * * * *
69541 AACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCGTTA
129 AATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTA
* ** * * *
69594 TGACCTTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGTTTGA-TCGAAATAAAATA
1 TGACC-TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTT-ATTCAAAATAAAATA
* * *
69658 ATATTAATTTGTTAATATTTTAAAAATTAATAAG--A-A-ATTTAATAAATAAATCTA-TTTA-C
64 ATATTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TAGTTTATC
* * * * * * *
69717 -CATACTAGTTCAACTAGTTATAACAATTTGAACATTTATTTATTTCAAAT
128 GAAT-C-AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
69767 AATACTAAAT
Statistics
Matches: 586, Mismatches: 108, Indels: 46
0.79 0.15 0.06
Matches are distributed among these distances:
176 1 0.00
177 1 0.00
178 54 0.09
179 9 0.02
180 89 0.15
181 343 0.59
182 82 0.14
183 7 0.01
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (181 bp):
TGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTCAAAATAAAATAAT
ATTAATTTATTAATATTATAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTATCGAA
TCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTA
Found at i:69531 original size:362 final size:361
Alignment explanation
Indices: 68921--69766 Score: 969
Period size: 362 Copynumber: 2.3 Consensus size: 361
68911 AAATGCTTAT
* * * * *
68921 TCGAAATAAAATAATACTAATTTATTAACATTCAAAAAATTATTAACTAAGAAATTAGAAAAA-A
1 TCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGT-AGAATTTA-AAAAATA
* * * * * *
68985 AATCAATTTACCGAA-CAAGTTCAAATATTTTTTACTATTTGAACAATTATCTATTTAAAATCGT
64 AATCTATTTA-CGAATCAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTTCAAATCGT
* * *
69049 TATGACCTTATATTTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTATCTAAAATAAAATA
128 TATAACCTTATATTTTATCATAAAACAATTATTTCACTTCATAAAAGCTTATCTAAAATAAAATA
* * * * * * *
69114 ATATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAATTAGTTTA-TC
193 ATATTAATCTAGTAATATTATAAAAATTAATAACTAAGAGATTTAAAAAATAAATTAGTTTACT-
* * *
69178 GAATCAATTCAAATAATTATGGCCATTTAAACAATTATCTATTTCAAATCATTATGAAC-TTTTG
257 GAACCAATTCAAATAATTAAGGCCATATAAACAATTATCTATTTCAAATCATTATGAACTTTTTG
*
69242 TTTCGTCATAAAACAATTATTTTTCATCATACAAGCCT-A
322 TTTCGTCATAAAACAAATATTTTTCATCATACAAGCCTGA
69281 TTC-AGAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAGGAGATTTAAAAAA
1 -TCGA-AATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTA-GA-ATTTAAAAAA
* * *
69345 TAAATCTGTTTATCGAATC-AGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCCAATC
62 TAAATCTATTTA-CGAATCAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTTCAAATC
* * * *
69409 GTTATAACTTTTTATTTTGTCATAAAACAATTATTT-ATCTTCATACAAGCTTAT-TCAAAATAA
126 GTTATAACCTTATATTTTATCATAAAACAATTATTTCA-CTTCATAAAAGCTTATCT-AAAATAA
* * * *
69472 AATAATATTAATCTAGTAATATTATGAAATTTAATAACTAATAGATTTAAAAAATAAATTTGTTT
189 AATAATATTAATCTAGTAATATTATAAAAATTAATAACTAAGAGATTTAAAAAATAAATTAGTTT
* * * * * *
69537 ACTGAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCGTTATGACCTTT
254 ACTGAACCAATTCAAATAATTAAGGCCATATAAACAATTATCTATTTCAAATCATTATGAACTTT
* * ** * **
69602 TTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGTTTGA
319 TTGTTTCGTCATAAAACAAATATTTTTCATCATACAAGCCTGA
* * * *
69645 TCGAAATAAAATAATATTAATTTGTTAATATTTTAAAAATTAATAAG-A-AATTTAATAAATAAA
1 TCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAGAATTTAAAAAATAAA
* * * * * *
69708 TCTATTTAC-CATACTAGTTCAACTAGTTATAACAATTTGAACATTTATTTATTTCAAAT
66 TCTATTTACGAAT-CAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTTCAAAT
69767 AATACTAAAT
Statistics
Matches: 411, Mismatches: 61, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
357 2 0.00
358 2 0.00
359 58 0.14
360 3 0.01
361 51 0.12
362 214 0.52
363 79 0.19
364 2 0.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (361 bp):
TCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAGAATTTAAAAAATAAA
TCTATTTACGAATCAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTTCAAATCGTTAT
AACCTTATATTTTATCATAAAACAATTATTTCACTTCATAAAAGCTTATCTAAAATAAAATAATA
TTAATCTAGTAATATTATAAAAATTAATAACTAAGAGATTTAAAAAATAAATTAGTTTACTGAAC
CAATTCAAATAATTAAGGCCATATAAACAATTATCTATTTCAAATCATTATGAACTTTTTGTTTC
GTCATAAAACAAATATTTTTCATCATACAAGCCTGA
Found at i:71879 original size:37 final size:37
Alignment explanation
Indices: 71838--71910 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
71828 AATAAGTAAT
*
71838 TAAAT-TATTAATTAATAATAATAATTAATTATTATTA
1 TAAATATATTAATAAATAAT-ATAATTAATTATTATTA
* *
71875 TAAATATATTAATAAATTATATATTTAATTATTATT
1 TAAATATATTAATAAATAATATAATTAATTATTATT
71911 TAGTAATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 20 0.62
38 12 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (37 bp):
TAAATATATTAATAAATAATATAATTAATTATTATTA
Found at i:71887 original size:25 final size:23
Alignment explanation
Indices: 71826--71874 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 23
71816 ACATTTTATC
71826 ATAATAAGTAATTAAATTATTAATTA
1 ATAATAA-TAATT-AATTATT-ATTA
71852 ATAATAATAATTAATTATTATTA
1 ATAATAATAATTAATTATTATTA
71875 TAAATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.17
24 7 0.30
25 5 0.22
26 7 0.30
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATAATAATAATTAATTATTATTA
Done.