Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168393.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_61, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142147
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 3 of 5
Found at i:72082 original size:29 final size:29
Alignment explanation
Indices: 72021--72082 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
72011 AATAAATTCA
*
72021 TAATT-TTATAATTAAAATAATATTAAAT
1 TAATTATTATAATTAAAATAATAATAAAT
* *
72049 T-ATTATTATAACTTATAATAA-AATAACT
1 TAATTATTATAA-TTAAAATAATAATAAAT
72077 TAATTA
1 TAATTA
72083 CTATTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.11
28 13 0.46
29 12 0.43
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
TAATTATTATAATTAAAATAATAATAAAT
Found at i:72277 original size:18 final size:19
Alignment explanation
Indices: 72254--72298 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
72244 GTCCAATTAA
72254 ATTATATAATAAATAAT-T
1 ATTATATAATAAATAATAT
*
72272 ATTATATAATAGATAATAT
1 ATTATATAATAAATAATAT
*
72291 ATAATATA
1 ATTATATA
72299 CAATTATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATTATATAATAAATAATAT
Found at i:72297 original size:7 final size:7
Alignment explanation
Indices: 72256--72308 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
72246 CCAATTAAAT
72256 TATATAA
1 TATATAA
*
72263 TAAATAA
1 TATATAA
72270 T-TAT--
1 TATATAA
72274 TATATAA
1 TATATAA
*
72281 TAGATAA
1 TATATAA
72288 TATATAA
1 TATATAA
*
72295 TATACAA
1 TATATAA
72302 T-TATAA
1 TATATAA
72308 T
1 T
72309 TACATATTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
4 1 0.03
5 3 0.08
6 7 0.19
7 26 0.70
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (7 bp):
TATATAA
Found at i:72308 original size:13 final size:13
Alignment explanation
Indices: 72276--72322 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
72266 ATAATTATTA
* *
72276 TATAATAGATAAT
1 TATAATATACAAT
72289 ATATAATATACAAT
1 -TATAATATACAAT
72303 TATAAT-TACATAT
1 TATAATATACA-AT
72316 TATAATA
1 TATAATA
72323 ATTAATATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 4 0.14
13 14 0.48
14 11 0.38
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (13 bp):
TATAATATACAAT
Found at i:72353 original size:14 final size:15
Alignment explanation
Indices: 72254--72377 Score: 58
Period size: 14 Copynumber: 8.5 Consensus size: 15
72244 GTCCAATTAA
72254 ATTATATAATAAATAATT
1 ATTAT-TAAT-AATAA-T
72272 ATTATATAATAGATAAT
1 ATTAT-TAATA-ATAAT
72289 A-TA-TAAT-ATACA-
1 ATTATTAATAATA-AT
72301 ATTA-TAAT--TACAT
1 ATTATTAATAATA-AT
72314 ATTA-TAATAATTAAT
1 ATTATTAATAA-TAAT
* *
72329 ATGATTCATAA-AAT
1 ATTATTAATAATAAT
72343 ATTATTAATAAT-AT
1 ATTATTAATAATAAT
72357 -TTAATT-ATAATAAT
1 ATT-ATTAATAATAAT
72371 -TTATTAA
1 ATTATTAA
72378 ATTATTACAT
Statistics
Matches: 90, Mismatches: 4, Indels: 28
0.74 0.03 0.23
Matches are distributed among these distances:
12 8 0.09
13 25 0.28
14 26 0.29
15 5 0.06
16 9 0.10
17 3 0.03
18 14 0.16
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTATTAATAATAAT
Found at i:72436 original size:18 final size:19
Alignment explanation
Indices: 72413--72448 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
72403 AATTATTATA
72413 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
72431 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
72449 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:74112 original size:14 final size:14
Alignment explanation
Indices: 74090--74119 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74080 ATAAAGCTAA
*
74090 ATAATTATATTATT
1 ATAAATATATTATT
74104 ATAAATATATTATT
1 ATAAATATATTATT
74118 AT
1 AT
74120 CTTAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATAAATATATTATT
Found at i:74279 original size:21 final size:20
Alignment explanation
Indices: 74232--74280 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
74222 CATAATACTA
*
74232 ATTTTAATCTATTATAATTT
1 ATTTTAATCAATTATAATTT
74252 A-TTTAAT-AATTATAATTAAT
1 ATTTTAATCAATTATAATT--T
74272 ATTTTAATC
1 ATTTTAATC
74281 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 9 0.38
19 6 0.25
20 3 0.12
21 6 0.25
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTAATCAATTATAATTT
Found at i:74787 original size:10 final size:10
Alignment explanation
Indices: 74765--74830 Score: 52
Period size: 10 Copynumber: 7.1 Consensus size: 10
74755 TATCCAAAAA
*
74765 TTAATTAAAT
1 TTAATTAATT
*
74775 TTAGTTAATT
1 TTAATTAATT
74785 TTAATTAATT
1 TTAATTAATT
74795 TT-ATT-A--
1 TTAATTAATT
*
74801 -TAAATAATT
1 TTAATTAATT
*
74810 TTAATTATTT
1 TTAATTAATT
*
74820 TTAAATAATT
1 TTAATTAATT
74830 T
1 T
74831 AAAGAATTAA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
5 1 0.02
6 2 0.05
7 1 0.02
8 1 0.02
9 3 0.07
10 35 0.81
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (10 bp):
TTAATTAATT
Found at i:74852 original size:21 final size:22
Alignment explanation
Indices: 74823--74870 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
74813 ATTATTTTTA
74823 AATAATTTAAAGAATTAAAT-T
1 AATAATTTAAAGAATTAAATAT
* *
74844 AATACTTTAAAGAATTATATAT
1 AATAATTTAAAGAATTAAATAT
74866 AATAA
1 AATAA
74871 AATTAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AATAATTTAAAGAATTAAATAT
Found at i:75555 original size:20 final size:20
Alignment explanation
Indices: 75518--75555 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75508 TTTTAAAATA
*
75518 TTATTAAATTAGCATTATTT
1 TTATTAAATAAGCATTATTT
75538 TTATCTAAATAAGC-TTAT
1 TTAT-TAAATAAGCATTAT
75556 ATGATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (20 bp):
TTATTAAATAAGCATTATTT
Found at i:75885 original size:180 final size:182
Alignment explanation
Indices: 75141--76172 Score: 828
Period size: 180 Copynumber: 5.7 Consensus size: 182
75131 TTTAAATCTC
* * ** * * * * *
75141 TTAA-TTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGGATAAACTTTTGTGGACTAAA
1 TTAATTTTTC-AAATATTAA-TAAATTAGTATTATTTTATTTCAGATAAGCTTGTATGAACTGAA
* * *
75205 ACAATTGTTTTATGACAAAACAAAAATG-CACAATGATTTTAAATAGATAATTGTTCAAATAGTC
64 ACAATTATTTTATGACAAAAC-AAAATGTCAAAATGATTTGAAATAGATAATTGTTCAAATAGTC
* * * *
75269 ATAACTATTTG-AACTTGTTCAGTAAACAAATTTAGTTTTTCAAATATCTTGCTTA
128 ATAACTATTTGAAAC-TGTTCAGTAAACAGATTTATTTTTTTAAATCTCTTGCTTA
* *
75324 TTAATCTTTCAAA-AGTTAATAAATTAGTATTATTTTCTTTC-GAATAAGCTTGTATGAACTGAA
1 TTAATTTTTCAAATA-TTAATAAATTAGTATTATTTTATTTCAG-ATAAGCTTGTATGAACTGAA
* ** * * * * *
75387 ACAATTATTGTATGATTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTATTCTAATAATCT
64 ACAATTATTTTATGACAAAACAAAATGTCAAAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* * * *
75452 TAACTATTTG-AACTGATT-GGCAAACACA-TT-TTTTTTTAAATCTCTTACTTA
129 TAACTATTTGAAACTG-TTCAGTAAACAGATTTATTTTTTTAAATCTCTTGCTTA
* * * * * * ***
75503 TTAATTTTTAAAATATTATTAAATTAGCATTATTTT-TATCTAAATAAGCTTATATGATAAAAAA
1 TTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTC-AGATAAGCTTGTATGA-ACTGAA
* * * * *
75567 ACAATTGTTTTATGACAAAAC-AAA-GATCATAACGATTTGAGATTA-ATATTTGTTCAAATAGT
64 ACAATTATTTTATGACAAAACAAAATG-TCAAAATGATTTGA-AATAGATAATTGTTCAAATAGT
* * * * * *
75629 CATAACTATTAGAACTACT-TTGA-AAAATAGCTTTA-GTTTTTAAATCTCTTGCTTA
127 CATAACTATTTGAA--ACTGTTCAGTAAACAGATTTATTTTTTTAAATCTCTTGCTTA
* * * * * * *
75684 ATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAGATAAGTTTTTATTAACTGAAAT
1 TTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCAGATAAGCTTGTATGAACTGAAAC
* * * * * *
75749 AATTATTTTATGGCAAAACAAAATGTCAAAATAATTTTAAACAGATAATTGTTTAAATAGTCATG
66 AATTATTTTATGACAAAACAAAATGTCAAAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* *
75814 TC-ATTTGAAATTGTTCAGTAAACAGATTTATTTTTTTTAAATCTCTTGC-T-
131 ACTATTTGAAACTGTTCAGTAAACAGATTTA-TTTTTTTAAATCTCTTGCTTA
* * * *
75864 TTAATTTTTCAAATGTTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACTGAAAT
1 TTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCAGATAAGCTTGTATGAACTGAAAC
* * * * * *** *
75929 AATTATTTTATGACCAAACAAAAGGAT-AGAATGATTTAAAATAGATAATTATTTTGATAGTCTT
66 AATTATTTTATGACAAAACAAAATG-TCAAAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* *
75993 AACTATTTG-AACTAGTTCGGCT-AACATATTTA-TTTTTTAAA--TC-T-CTTA
130 AACTATTTGAAACT-GTTCAG-TAAACAGATTTATTTTTTTAAATCTCTTGCTTA
* * * * * **
76041 TTAATTTTTGAAATATTATTAAATTAGGATCATTTTAATTTGA-ATAAGCTTGTATGAAAGGAAA
1 TTAATTTTTCAAATATTAATAAATTAGTATTATTTT-ATTTCAGATAAGCTTGTATGAACTGAAA
* * * ** ** *
76105 CAATTGTTGTATGACAAAA-TAAA-GATCATTATGATTTGTGATAGATAATTGTTCAAATAGTTA
65 CAATTATTTTATGACAAAACAAAATG-TCAAAATGATTTGAAATAGATAATTGTTCAAATAGTCA
76168 TAACT
129 TAACT
76173 TGTATTAATA
Statistics
Matches: 675, Mismatches: 141, Indels: 73
0.76 0.16 0.08
Matches are distributed among these distances:
175 4 0.01
176 35 0.05
177 67 0.10
178 10 0.01
179 110 0.16
180 182 0.27
181 131 0.19
182 121 0.18
183 11 0.02
184 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (182 bp):
TTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCAGATAAGCTTGTATGAACTGAAAC
AATTATTTTATGACAAAACAAAATGTCAAAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
ACTATTTGAAACTGTTCAGTAAACAGATTTATTTTTTTAAATCTCTTGCTTA
Found at i:76369 original size:44 final size:45
Alignment explanation
Indices: 76313--76415 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 45
76303 TATATATATT
* *
76313 ATAATT-ATAATATTATAATATTATTTATT-ATTAAAATA-TTTAA
1 ATAATTAATAATATTATAA-ATTATATATTAAATAAAATAGTTTAA
* *
76356 ATAATTAATAATATT-TTAATTATATATTAAATAAATTAGTTTAA
1 ATAATTAATAATATTATAAATTATATATTAAATAAAATAGTTTAA
76400 AT-ATTAATAAATATTA
1 ATAATTAAT-AATATTA
76416 ATACAAGCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
42 9 0.18
43 21 0.41
44 21 0.41
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (45 bp):
ATAATTAATAATATTATAAATTATATATTAAATAAAATAGTTTAA
Found at i:76506 original size:23 final size:23
Alignment explanation
Indices: 76474--76521 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
76464 GATAAATTAG
*
76474 TTTATAAATATTATAA-TTATAAT
1 TTTATAAATA-TAAAACTTATAAT
*
76497 TTTATTAATATAAAACTTATAAT
1 TTTATAAATATAAAACTTATAAT
76520 TT
1 TT
76522 AAATTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTATAAATATAAAACTTATAAT
Found at i:76633 original size:15 final size:15
Alignment explanation
Indices: 76579--76635 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
76569 TAAACTACTA
*
76579 ATTAATAATAATATTA
1 ATTAAT-ATAATATTG
*
76595 ATTATTATATTAAAATTG
1 ATTA--ATA-TAATATTG
*
76613 AATAATATAATATTG
1 ATTAATATAATATTG
76628 ATTAATAT
1 ATTAATAT
76636 TTTAAAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
15 14 0.42
16 7 0.21
17 1 0.03
18 11 0.33
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (15 bp):
ATTAATATAATATTG
Found at i:76891 original size:18 final size:18
Alignment explanation
Indices: 76856--76891 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76846 ATAAAAATAA
* *
76856 TAATAAAATAGTTTAAAT
1 TAATAAAATAATTAAAAT
76874 TAATAAAATAATTAAAAT
1 TAATAAAATAATTAAAAT
76892 AATTAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
TAATAAAATAATTAAAAT
Found at i:77468 original size:22 final size:21
Alignment explanation
Indices: 77426--77481 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
77416 TAAAAAATAA
*
77426 ATATAAATATTAAATTATATT
1 ATATAAATATTAAAATATATT
77447 ATATATAATATTAATAAT-TATT
1 ATATA-AATATTAA-AATATATT
*
77469 GTATAATATATTA
1 ATATAA-ATATTA
77482 TTATATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 6 0.20
22 22 0.73
23 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATAAATATTAAAATATATT
Found at i:77842 original size:9 final size:9
Alignment explanation
Indices: 77816--77858 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
77806 CAAATACATC
77816 TATATATA-
1 TATATATAT
77824 TATATATAT
1 TATATATAT
*
77833 TATGTATAT
1 TATATATAT
77842 TATATATAT
1 TATATATAT
*
77851 TATTTATA
1 TATATATA
77859 AAATAATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
8 8 0.26
9 23 0.74
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
TATATATAT
Found at i:78045 original size:22 final size:22
Alignment explanation
Indices: 78020--78076 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
78010 AATTAATTTT
78020 ATAATAAT-ATTACTAATTATAA
1 ATAATAATAATTA-TAATTATAA
* *
78042 ATAATCATAATTATAATTATAG
1 ATAATAATAATTATAATTATAA
78064 AT-ATAATTAATTA
1 ATAATAA-TAATTA
78077 ATATATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 3 0.10
22 23 0.77
23 4 0.13
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAATAATTATAATTATAA
Found at i:78052 original size:16 final size:16
Alignment explanation
Indices: 78033--78093 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 16
78023 ATAATATTAC
78033 TAATTATAAATA-ATCA
1 TAATTATAAATAGAT-A
78049 TAATTATAATTATAGATA
1 TAATTATAA--ATAGATA
* *
78067 TAATTAATTAATATATAA
1 TAATT-ATAAATAGAT-A
78085 TAATTATAA
1 TAATTATAA
78094 TAGTATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 9 0.24
17 8 0.22
18 15 0.41
19 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
TAATTATAAATAGATA
Found at i:78094 original size:16 final size:16
Alignment explanation
Indices: 78023--78095 Score: 60
Period size: 16 Copynumber: 4.4 Consensus size: 16
78013 TAATTTTATA
*
78023 ATAATAT-TACTAATT
1 ATAATATATAATAATT
*
78038 ATAA-ATAATCATAATT
1 ATAATAT-ATAATAATT
*
78054 ATAATTATAGATATAATT
1 ATAA-TATATA-ATAATT
78072 AATTAATATATAATAATT
1 -A-TAATATATAATAATT
78090 ATAATA
1 ATAATA
78096 GTATTTATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
14 2 0.04
15 4 0.09
16 15 0.33
17 2 0.04
18 14 0.30
19 6 0.13
20 3 0.07
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (16 bp):
ATAATATATAATAATT
Found at i:78272 original size:24 final size:25
Alignment explanation
Indices: 78219--78272 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
78209 TTATTAAGGT
*
78219 TATTAATAATTATATATGAAGTATA
1 TATTAATAATTATATATAAAGTATA
*
78244 T-TTAATAATT-TAT-TAAATTATAA
1 TATTAATAATTATATATAAAGTAT-A
78267 TATTAA
1 TATTAA
78273 ATTTAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 6 0.24
23 5 0.20
24 13 0.52
25 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (25 bp):
TATTAATAATTATATATAAAGTATA
Found at i:78418 original size:24 final size:22
Alignment explanation
Indices: 78352--78419 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 22
78342 ATTATATTAG
78352 TTATTAATTAATA-ATTTATAA-
1 TTATTAATTAATATA-TTATAAT
*
78373 -TATTAATTAATATAGTATTAAT
1 TTATTAATTAATATATTA-TAAT
78395 TTATTTAATTAATATTATTATAAT
1 TTA-TTAATTAATA-TATTATAAT
78419 T
1 T
78420 AAGATAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
20 14 0.36
21 4 0.10
23 2 0.05
24 15 0.38
25 4 0.10
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (22 bp):
TTATTAATTAATATATTATAAT
Found at i:78420 original size:15 final size:15
Alignment explanation
Indices: 78341--78433 Score: 61
Period size: 15 Copynumber: 6.2 Consensus size: 15
78331 TTGAAAAAAC
78341 AATT-ATATTAGTTATT
1 AATTAATATTA-TTA-T
*
78357 AATTAATAAT-TTAT
1 AATTAATATTATTAT
* *
78371 AA-TATTAATTAATAT
1 AATTAAT-ATTATTAT
78386 AGTATTAAT-TTATT-T
1 A--ATTAATATTATTAT
78401 AATTAATATTATTAT
1 AATTAATATTATTAT
* *
78416 AATTAAGATAATTAT
1 AATTAATATTATTAT
78431 AAT
1 AAT
78434 AATTTAATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
13 9 0.15
14 10 0.16
15 26 0.43
16 8 0.13
17 5 0.08
18 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
AATTAATATTATTAT
Found at i:78476 original size:22 final size:22
Alignment explanation
Indices: 78449--78490 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
78439 AATATATATC
78449 TTTATTATAAAT-TTATTATTTA
1 TTTATTA-AAATATTATTATTTA
*
78471 TTTATTAATATATTATTATT
1 TTTATTAAAATATTATTATT
78491 ATAAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTATTAAAATATTATTATTTA
Found at i:78523 original size:29 final size:30
Alignment explanation
Indices: 78475--78551 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
78465 TATTTATTTA
* *
78475 TTAATATATTATTATTATAAATAATT-TAAT
1 TTAATA-ATTATAATAATAAATAATTATAAT
*
78505 TTATTAATTATAATAATAAATAATTATAAT
1 TTAATAATTATAATAATAAATAATTATAAT
* *
78535 TTAATATTTAGAATAAT
1 TTAATAATTATAATAAT
78552 TATTATTTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 17 0.43
30 23 0.57
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (30 bp):
TTAATAATTATAATAATAAATAATTATAAT
Found at i:78531 original size:23 final size:24
Alignment explanation
Indices: 78505--78556 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
78495 ATAATTTAAT
78505 TTATTAATTATAATA-ATA-AATAA
1 TTATTAATT-TAATATATAGAATAA
*
78528 TTA-TAATTTAATATTTAGAATAA
1 TTATTAATTTAATATATAGAATAA
78551 TTATTA
1 TTATTA
78557 TTTTGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 5 0.20
22 7 0.28
23 11 0.44
24 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
TTATTAATTTAATATATAGAATAA
Found at i:78597 original size:15 final size:16
Alignment explanation
Indices: 78579--78609 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78569 TTATATATTT
78579 ATAATA-TATAATTAA
1 ATAATATTATAATTAA
78594 ATAATATTATAATTAA
1 ATAATATTATAATTAA
78610 TTATAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAATATTATAATTAA
Found at i:78718 original size:21 final size:21
Alignment explanation
Indices: 78693--78732 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
78683 GATAAACTAA
78693 TTATT-TATAATACAAATAAAT
1 TTATTATATAATA-AAATAAAT
78714 TTATTATATAATAAAATAA
1 TTATTATATAATAAAATAA
78733 TTAAATAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTATTATATAATAAAATAAAT
Found at i:78734 original size:20 final size:19
Alignment explanation
Indices: 78684--78734 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
78674 TTATACTAAG
*
78684 ATAAACTAA-TTATTTATA
1 ATAAAATAATTTATTTATA
78702 ATACAAATAAATTTATTATATA
1 ATA-AAAT-AATTTATT-TATA
78724 ATAAAATAATT
1 ATAAAATAATT
78735 AAATAACTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.11
19 3 0.11
20 6 0.21
21 9 0.32
22 7 0.25
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (19 bp):
ATAAAATAATTTATTTATA
Found at i:79278 original size:25 final size:28
Alignment explanation
Indices: 79231--79284 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
79221 ATTAATTGTC
**
79231 AAATATAAATTTATATTTTATAAT-TAA
1 AAATATAAATTTATATTAAATAATATAA
79258 AAATAT-AATTT-TATTAAATAATATAA
1 AAATATAAATTTATATTAAATAATATAA
79284 A
1 A
79285 CTATATATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 9 0.38
26 9 0.38
27 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATATAAATTTATATTAAATAATATAA
Found at i:79624 original size:21 final size:22
Alignment explanation
Indices: 79598--79696 Score: 67
Period size: 23 Copynumber: 4.3 Consensus size: 22
79588 AAATTAATAC
79598 TATTATAATATTTAATATTAA-
1 TATTATAATATTTAATATTAAT
** *
79619 TATTATTTTATTGTTATATTAAT
1 TATTATAATATT-TAATATTAAT
*
79642 TAATTGATTAATATAATAA-ATTAAT
1 T-ATT-A-TAATAT-TTAATATTAAT
* *
79667 AATTTATAATATTTGATTATTAAT
1 TA-TTATAATATTT-AATATTAAT
79691 TATTAT
1 TATTAT
79697 TAAGTAATTA
Statistics
Matches: 58, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
21 10 0.17
22 9 0.16
23 12 0.21
24 12 0.21
25 9 0.16
26 6 0.10
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (22 bp):
TATTATAATATTTAATATTAAT
Found at i:79625 original size:24 final size:24
Alignment explanation
Indices: 79590--79698 Score: 68
Period size: 24 Copynumber: 4.5 Consensus size: 24
79580 TAAATAATAA
*
79590 ATTAATACTATTATAATATTTAAT
1 ATTAATATTATTATAATATTTAAT
*
79614 ATTAATATTATT-T--TATTGTTAT
1 ATTAATATTATTATAATATT-TAAT
* *
79636 ATTAAT-TAATTGATTAATATAATAA-
1 ATTAATATTATT-A-TAATAT-TTAAT
* *
79661 ATTAATAAT-TTATAATATTTGATT
1 ATTAATATTATTATAATATTT-AAT
79685 ATTAATTATTATTA
1 ATTAA-TATTATTA
79699 AGTAATTATA
Statistics
Matches: 63, Mismatches: 10, Indels: 22
0.66 0.11 0.23
Matches are distributed among these distances:
21 8 0.13
22 10 0.16
23 8 0.13
24 18 0.29
25 11 0.17
26 8 0.13
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (24 bp):
ATTAATATTATTATAATATTTAAT
Found at i:79713 original size:71 final size:70
Alignment explanation
Indices: 79579--79713 Score: 168
Period size: 71 Copynumber: 1.9 Consensus size: 70
79569 TTATTGTTAT
* * **
79579 TTAAATAATAAATTAATACTATTATAATATTTAATATTAATATTATTTTATTGTTATATTAATTA
1 TTAAATAATAAATTAATAATATTATAATATTTAATATTAATATTATTTAATAATTATATTAATTA
79644 ATTGA
66 ATTGA
*
79649 TTAATATAATAAATTAATAAT-TTATAATATTTGATTATTAATTATTA-TTAAGTAATTATA-TA
1 TTAA-ATAATAAATTAATAATATTATAATATTT-AATATTAA-TATTATTTAA-TAATTATATTA
79711 ATT
62 ATT
79714 TTGCTATATT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
70 15 0.27
71 30 0.54
72 11 0.20
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (70 bp):
TTAAATAATAAATTAATAATATTATAATATTTAATATTAATATTATTTAATAATTATATTAATTA
ATTGA
Found at i:79913 original size:15 final size:16
Alignment explanation
Indices: 79895--79927 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79885 TTAAAACTCC
*
79895 AAAAA-TTAATAAATA
1 AAAAATTTAAAAAATA
79910 AAAAATTTAAAAAATA
1 AAAAATTTAAAAAATA
79926 AA
1 AA
79928 TATGTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATTTAAAAAATA
Found at i:80207 original size:181 final size:180
Alignment explanation
Indices: 79896--81168 Score: 1040
Period size: 181 Copynumber: 7.2 Consensus size: 180
79886 TAAAACTCCA
* * ***
79896 AAAATTAATAAATAAAAAATTTAAAAAATAAATATGTTTTTTGAACACA-TTC-AATAGTTATGA
1 AAAATTAATAAATAAAAGATTT-AAAAATAAATTTGTTTACCGAACA-AGTTCAAATAGTTATGA
** * * *
79959 CTATTTGAACAATTATCTATTTCAAATCATTATG-ACAATTTGTTTTGTCATAAACCAATTATTT
64 CTATTTGAACAATTATCTATTTCAAATTGTTATGAAC-TTTTGTTTTGTCATAAAACAATTGTTT
* *
80023 CTATTCATACAAGCTTATTCGAAATAAAATAATATTAATTCATTAATATTTCT
128 CTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT
* * *
80076 AAAATTAATAAATAAAAGATTTAAATAATAAATTTGTTAACCGAGCAAGTTCAAATAGTTATTAC
1 AAAATTAATAAATAAAAGATTTAAA-AATAAATTTGTTTACCGAACAAGTTCAAATAGTTATGAC
* * *
80141 TATTTGAACAATTATATATTTCAAATCT-TTGTGATCTTTTGTTTTGTCATAAAACAATTGTTTC
65 TATTTGAACAATTATCTATTTCAAAT-TGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTC
* * * * *
80205 TATTCACACAAGTTTATTTGGAATAAAATAATACTAATTTATTATTA-TTCT
129 TATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT
* * * * * * *
80256 AAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTACCGAATAAGTTTAAATAGTCATGT
1 -AAAATTAATAAATAAAAGATTT-AAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTATGA
* ** * ** * * * *
80321 CCATTTGAACTGTTATTTATTTCAAATCATTATGAAATTTTGTTTTATTATAAAATAATTGTTTC
64 CTATTTGAACAATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTC
** * * *
80386 TATTCATACAAAATTATT-TAGAATAAAATAATACCAATTTATTACTATTTC-
129 TATTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATATTTCT
* * * * *
80437 -AAA--AATTAAT-AAGGATTTAAAAA-AAATGTGTTTTCCGAA-ACAGTTCAAATAGTTAAGAC
1 AAAATTAATAAATAAAAGATTTAAAAATAAATTTGTTTACCGAACA-AGTTCAAATAGTTATGAC
* * * * * * * * * *
80496 TATTAGAACAACTATCTATTCCAAATTATTCTGATCTTTTGTTTAGTCAAAAAATAATTGTTTCA
65 TATTTGAACAATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTCT
*** * * * * **
80561 ATTCATATGTGCTTATTCAAAATATAGTAATACTAATTTATTAAAATTTAG
130 ATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT
* * *
80612 AAAATTAAT--A-AGAA-A-TTAAAAA-AAATTTATTTACCGAATAAGTTCAAATAGTTATGACT
1 AAAATTAATAAATAAAAGATTTAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTATGACT
* * * * * *
80671 ATTTGAATAATTATCTATTTAAAATTGTTACGACCTTTTATTTTATCAT-AAACTAATTGTTTC-
66 ATTTGAACAATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAAC-AATTGTTTCT
** * * * * ** *
80734 AGTAAATAAAAGGTT-TTCCAAAATAAAATAATATTGCTTTATTAATATTTCA
130 A-TTCATACAAGCTTATT-CGAAATAAAATAATACTAATTTATTAATATTTCT
* * *** * * ** * * ** * * *
80786 AAAATTAAGAAGTTGGAGTTTTAAAAAAAAATAAGTTTATCAAATTA-TTCAAATAATTATGGCC
1 AAAATTAATAAATAAAAGATTTAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTATGACT
* * *
80850 ATTTGAATAATTATCTATTTCAAATTGTTATGAACTTTTGTTCTGTCATAAAACAATTGTTTTTC
66 ATTTGAACAATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTCT-
* * * * *
80915 A-TCAAACAAGCCTATTTGGAATAAAATAATACTAATTTACTAATATTTC-
130 ATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT
* * * * * * *
80964 -AAA--AATTAATAAAAGATTTAAAAAGTTAATCTATTTACTGAACCACTTCAAATAGTTATGAC
1 AAAATTAATAAATAAAAGATTTAAAAA-TAAATTTGTTTACCGAACAAGTTCAAATAGTTATGAC
* * * *
81026 TATTTGAACAATTATATATTTCAAATTGTTAT-AACCTTTTGTTGTCTCATAAAACAATTATTTC
65 TATTTGAACAATTATCTATTTCAAATTGTTATGAA-CTTTTGTTTTGTCATAAAACAATTGTTTC
* * * *
81090 TATTCACACAAGTTTATTCGAAATAAAATAATACTAATATAATAATA-TTCT
129 TATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT
* *
81141 AAAAATTAATAACTAAGAGATTTAAAAA
1 -AAAATTAATAAATAAAAGATTTAAAAA
81169 ATAACATATA
Statistics
Matches: 861, Mismatches: 192, Indels: 79
0.76 0.17 0.07
Matches are distributed among these distances:
173 7 0.01
174 237 0.28
175 22 0.03
176 27 0.03
177 116 0.13
178 3 0.00
179 114 0.13
180 62 0.07
181 266 0.31
182 7 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
AAAATTAATAAATAAAAGATTTAAAAATAAATTTGTTTACCGAACAAGTTCAAATAGTTATGACT
ATTTGAACAATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTCTA
TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT
Found at i:81415 original size:22 final size:22
Alignment explanation
Indices: 81390--81436 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
81380 TTATGGATCA
81390 AATAAAATAACTAT-TTTATTAT
1 AATAAAATAA-TATATTTATTAT
**
81412 AATATTATAATATATTTATTAT
1 AATAAAATAATATATTTATTAT
81434 AAT
1 AAT
81437 GTACTTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AATAAAATAATATATTTATTAT
Found at i:81903 original size:21 final size:21
Alignment explanation
Indices: 81879--81938 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
81869 TAATTATACC
*
81879 TAATATTGATATTATTATTTG
1 TAATATTGATATTATTATTTA
* *
81900 TAAT-CTGTATATTAATTAGTTA
1 TAATATTG-ATATT-ATTATTTA
*
81922 TAATATT-ATTTTATTAT
1 TAATATTGATATTATTAT
81939 AATATAGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 6 0.20
21 13 0.43
22 10 0.33
23 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TAATATTGATATTATTATTTA
Found at i:82391 original size:15 final size:15
Alignment explanation
Indices: 82373--82411 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
82363 AAATATATTT
82373 ATACTAATATAAATA
1 ATACTAATATAAATA
* *
82388 ATACTAATTTATATA
1 ATACTAATATAAATA
*
82403 ATAATAATA
1 ATACTAATA
82412 ATTTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (15 bp):
ATACTAATATAAATA
Found at i:82407 original size:18 final size:19
Alignment explanation
Indices: 82379--82417 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
82369 ATTTATACTA
*
82379 ATATAAATAATACTAATTT
1 ATATAAATAATAATAATTT
82398 ATAT-AATAATAATAATTT
1 ATATAAATAATAATAATTT
82416 AT
1 AT
82418 TATTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATAAATAATAATAATTT
Found at i:82598 original size:15 final size:15
Alignment explanation
Indices: 82515--82615 Score: 52
Period size: 15 Copynumber: 6.7 Consensus size: 15
82505 CTAAGTAATA
* *
82515 ATTATTTAATTATAT
1 ATTAATTAAATATAT
*
82530 A-TAATTAAATAAACT
1 ATTAATTAAATATA-T
*
82545 ATT-ATTAAATTTAT
1 ATTAATTAAATATAT
82559 ATTAA-T-AATAGTTAT
1 ATTAATTAAATA--TAT
*
82574 TTCATAATTAAATATAT
1 AT--TAATTAAATATAT
82591 ATTAATTATAA-ATAT
1 ATTAATTA-AATATAT
*
82606 -TAAATTAAAT
1 ATTAATTAAAT
82616 TAATTTAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 23
0.67 0.09 0.23
Matches are distributed among these distances:
13 5 0.08
14 20 0.30
15 26 0.39
16 3 0.05
17 7 0.11
18 1 0.02
19 4 0.06
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (15 bp):
ATTAATTAAATATAT
Found at i:83287 original size:23 final size:23
Alignment explanation
Indices: 83260--83353 Score: 67
Period size: 23 Copynumber: 4.2 Consensus size: 23
83250 AACTAATATA
*
83260 AATTAATTTAATATATAA-TTATT
1 AATT-ATTAAATATATAATTTATT
*
83283 AATTATTAAATATTTAATTTATT
1 AATTATTAAATATATAATTTATT
*
83306 AATGA-T--ATAT-TAATTTATT
1 AATTATTAAATATATAATTTATT
*
83325 AA-TATTATAA-ATTTATATTTATT
1 AATTATTA-AATATATA-ATTTATT
83348 GAATTA
1 -AATTA
83354 ATTTATATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
18 1 0.02
19 12 0.21
20 4 0.07
21 2 0.03
22 15 0.26
23 20 0.34
24 2 0.03
25 2 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
AATTATTAAATATATAATTTATT
Found at i:83306 original size:16 final size:16
Alignment explanation
Indices: 83281--83340 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 16
83271 TATATAATTA
83281 TTAA-TTATTAAATAT
1 TTAATTTATTAAATAT
83296 TTAATTTATTAATGATAT
1 TTAATTTATTAA--ATAT
83314 ATTAATTTATT-AATAT
1 -TTAATTTATTAAATAT
83330 TATAAATTTAT
1 T-T-AATTTAT
83341 ATTTATTGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.13
16 12 0.31
17 7 0.18
18 5 0.13
19 10 0.26
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
TTAATTTATTAAATAT
Found at i:83307 original size:8 final size:8
Alignment explanation
Indices: 83278--83352 Score: 50
Period size: 8 Copynumber: 9.1 Consensus size: 8
83268 TAATATATAA
83278 TTATTAA-
1 TTATTAAT
83285 TTATTAA-
1 TTATTAAT
*
83292 ATATTTAAT
1 TTA-TTAAT
83301 TTATTAAT
1 TTATTAAT
83309 GATATATTAAT
1 --T-TATTAAT
83320 TTATTAAT
1 TTATTAAT
*
83328 ATTATAAAT
1 -TTATTAAT
83337 TTA-T-AT
1 TTATTAAT
83343 TTATTGAAT
1 TTATT-AAT
83352 T
1 T
83353 AATTTATATA
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
6 5 0.09
7 10 0.18
8 19 0.35
9 13 0.24
10 1 0.02
11 7 0.13
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (8 bp):
TTATTAAT
Found at i:83307 original size:42 final size:41
Alignment explanation
Indices: 83261--83369 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 41
83251 ACTAATATAA
83261 ATTAATTTAATATATAATTATTAATTATTA-AATATTTA-ATTT
1 ATTAA-TTAATATATAATTATTAA-TATTATAA-ATTTATATTT
*
83303 ATTAA-TGATATATTAATTTATTAATATTATAAATTTATATTT
1 ATTAATTAATATA-TAA-TTATTAATATTATAAATTTATATTT
83345 ATTGAATTAATTTATATAA-TATTAA
1 ATT-AATTAA--TATATAATTATTAA
83370 ATAAGTTAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
40 6 0.11
41 13 0.23
42 21 0.37
43 8 0.14
44 2 0.04
45 3 0.05
46 4 0.07
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (41 bp):
ATTAATTAATATATAATTATTAATATTATAAATTTATATTT
Found at i:83317 original size:34 final size:34
Alignment explanation
Indices: 83262--83367 Score: 94
Period size: 34 Copynumber: 3.0 Consensus size: 34
83252 CTAATATAAA
*
83262 TTAATTTAATATATAATTATTAA-TTATTAAATAT
1 TTAATTTATTATATAATTATTAATTTATT-AATAT
*
83296 TTAATTTATTA-ATGATATATTAATTTATTAATAT
1 TTAATTTATTATATAAT-TATTAATTTATTAATAT
*
83330 TATAAATTTA-TAT-TTATTGAATTAATTTATATAATAT
1 T-T-AATTTATTATATAATT--ATTAATTTAT-TAATAT
83367 T
1 T
83368 AAATAAGTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
33 4 0.07
34 23 0.38
35 11 0.18
36 16 0.26
37 7 0.11
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (34 bp):
TTAATTTATTATATAATTATTAATTTATTAATAT
Found at i:83318 original size:19 final size:18
Alignment explanation
Indices: 83239--83340 Score: 97
Period size: 19 Copynumber: 5.7 Consensus size: 18
83229 TATTTAATTT
*
83239 TATATTAATTTAACTAATA
1 TATATTAATTT-ATTAATA
* *
83258 TAAATTAATTTAAT-ATA
1 TATATTAATTTATTAATA
83275 TAATTATTAA-TTATTAA-A
1 T-A-TATTAATTTATTAATA
83293 TAT-TTAATTTATTAATGA
1 TATATTAATTTATTAAT-A
83311 TATATTAATTTATTAATA
1 TATATTAATTTATTAATA
*
83329 T-TATAAATTTAT
1 TATATTAATTTAT
83341 ATTTATTGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
15 4 0.06
16 8 0.11
17 15 0.21
18 15 0.21
19 29 0.41
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (18 bp):
TATATTAATTTATTAATA
Found at i:83326 original size:27 final size:27
Alignment explanation
Indices: 83296--83366 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
83286 TATTAAATAT
*
83296 TTAATTTATTAATGATATATTAATT-TA
1 TTAATTTATTAAT-ATATATTAATTGAA
* * *
83323 TTAATATTATAAATTTATATTTATTGAA
1 TTAAT-TTATTAATATATATTAATTGAA
83351 TTAATTTATATAATAT
1 TTAATTTAT-TAATAT
83367 TAAATAAGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
27 18 0.51
28 17 0.49
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (27 bp):
TTAATTTATTAATATATATTAATTGAA
Found at i:83854 original size:180 final size:182
Alignment explanation
Indices: 83609--84109 Score: 498
Period size: 180 Copynumber: 2.8 Consensus size: 182
83599 TTATACTATT
* * * * ** * * *
83609 TTATTTGAAATAAAATAAAACTAATTTAATAATATTCTAAAACTTTTTAACCAAGAAAATTAAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCAAAAAATTAATAACAAAGAGATTTAAAA
* * * *
83674 AATAAATCTAATTGT-CGAACT-AGTTGAAATAGTTAAGACTAGAT-GAATGATTATCTATTTCA
66 AATAAAT-TAATT-TACCAAATCAGTTCAAATAGTTAAGACTA-ATAGAATAATTATCTATTTCA
* * * * * *
83736 AATCGTTATGACCTTTTCTTTTGTTGTAAAACAATTGTTTT-GTTCATACAA-GC
128 AATCGTTATAACATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
* *
83789 TTATTTGGATTAAAATAATACTAATTTAATAATATTTC-AAAAATTAATAACTAAGAGATTTAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATA-TTCAAAAAATTAATAACAAAGAGATTTAAA
* * *
83853 AAATAAATTTATTTACCAAATCAGTTCAAATGGTTAAGACTATTAGAATAATTATCTATTTCAAA
65 AAATAAATTAATTTACCAAATCAGTTCAAATAGTTAAGACTAATAGAATAATTATCTATTTCAAA
* * *
83918 TCGTTCTAATATTTTATTTGGTTATAAAACATTTGTTTTAGTTCATAAAAGGC
130 TCGTTATAACATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
* * * * *
83971 -TATTTAGAATAAATTAATGCTAATTTAGTAACATTCAAAAAATTAATAA-AAATGAGATTTAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCAAAAAATTAATAACAAA-GAGATTT-AA
* * * ** * * * * *
84034 AAAATAAATTTATTTACCGAA-CAAGTACAAATAGTTATTACTATTTGAACAATTGTCTATTTTA
64 AAAATAAATTAATTTACCAAATC-AGTTCAAATAGTTAAGACTAATAGAATAATTATCTATTTCA
84098 AATCGTTATAAC
128 AATCGTTATAAC
84110 CTTTATTAAA
Statistics
Matches: 268, Mismatches: 43, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
178 1 0.00
179 9 0.03
180 132 0.49
181 59 0.22
182 67 0.25
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (182 bp):
TTATTTGGAATAAAATAATACTAATTTAATAATATTCAAAAAATTAATAACAAAGAGATTTAAAA
AATAAATTAATTTACCAAATCAGTTCAAATAGTTAAGACTAATAGAATAATTATCTATTTCAAAT
CGTTATAACATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGC
Found at i:86281 original size:25 final size:25
Alignment explanation
Indices: 86242--86290 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
86232 AAGTATAAAT
86242 TAATAAATAACATAT-ATACTTATAA
1 TAATAAATAACATATAATA-TTATAA
* *
86267 TAATAAATTATATATAATATTATA
1 TAATAAATAACATATAATATTATA
86291 TTATATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (25 bp):
TAATAAATAACATATAATATTATAA
Found at i:86284 original size:17 final size:17
Alignment explanation
Indices: 86262--86300 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
86252 CATATATACT
86262 TATAATAATAAATTATA
1 TATAATAATAAATTATA
* *
86279 TATAATATTATATTATA
1 TATAATAATAAATTATA
86296 T-TAAT
1 TATAAT
86301 TAAATAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAATAATAAATTATA
Found at i:86608 original size:29 final size:30
Alignment explanation
Indices: 86576--86636 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
86566 ATAATAGTTA
*
86576 ATTAAATAAATACTTA-ATTTATTTAATAT
1 ATTAAATAAATACTTATAATTATTTAATAT
*
86605 ATTAAATAAATTCTTATTAATTATTTAATAT
1 ATTAAATAAATACTTA-TAATTATTTAATAT
86636 A
1 A
86637 ATAGAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 15 0.54
31 13 0.46
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTAAATAAATACTTATAATTATTTAATAT
Found at i:86673 original size:17 final size:18
Alignment explanation
Indices: 86643--86679 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
86633 TATAATAGAA
86643 TATTAATTTACT-AATAT
1 TATTAATTTACTAAATAT
86660 TATTAA-TTATCTAAATAT
1 TATTAATTTA-CTAAATAT
86678 TA
1 TA
86680 GTTTGATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 3 0.17
17 8 0.44
18 7 0.39
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTAATTTACTAAATAT
Found at i:86756 original size:21 final size:21
Alignment explanation
Indices: 86718--86771 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
86708 CAATTGTTTA
*
86718 ATTAAATTAT-AT-AATATTT
1 ATTATATTATAATAAATATTT
86737 ATTATATTATAATAAATATTT
1 ATTATATTATAATAAATATTT
* *
86758 AATATATAATAATA
1 ATTATATTATAATA
86772 TTATATAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 9 0.30
20 2 0.07
21 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTATATTATAATAAATATTT
Found at i:86789 original size:29 final size:28
Alignment explanation
Indices: 86740--86798 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
86730 AATATTTATT
*
86740 ATATTATAATAAATATTTAATATATAATA
1 ATATTATAATAAATATCTAATA-ATAATA
* *
86769 ATATTAT-ATAATTATCCTAATAATATTA
1 ATATTATAATAAATAT-CTAATAATAATA
86797 AT
1 AT
86799 CATTTTGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
ATATTATAATAAATATCTAATAATAATA
Found at i:86832 original size:17 final size:18
Alignment explanation
Indices: 86810--86844 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
86800 ATTTTGTTAA
86810 TAATATTAATT-AATTAT
1 TAATATTAATTAAATTAT
86827 TAATATTAATTAAATTAT
1 TAATATTAATTAAATTAT
86845 ACATTAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATATTAATTAAATTAT
Found at i:87102 original size:17 final size:17
Alignment explanation
Indices: 87082--87117 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
87072 TATATTAATT
* *
87082 ATTTATTATAAATTTTA
1 ATTTATCATAAATATTA
87099 ATTTATCATAAATATTA
1 ATTTATCATAAATATTA
87116 AT
1 AT
87118 AATTACTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATCATAAATATTA
Found at i:87331 original size:31 final size:31
Alignment explanation
Indices: 87296--87370 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
87286 CTTAATTATT
* *
87296 ATTAATATTTTATT-TTTAATATTAAAAATAA
1 ATTAAT-TTATATTATTTAATAATAAAAATAA
*
87327 ATTAATTTATATTATTTAATAATATAAAT-A
1 ATTAATTTATATTATTTAATAATAAAAATAA
87357 ATT-ATTATATATTA
1 ATTAATT-TATATTA
87371 ATCTTTTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
29 3 0.08
30 17 0.44
31 19 0.49
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTAATTTATATTATTTAATAATAAAAATAA
Found at i:87368 original size:17 final size:17
Alignment explanation
Indices: 87348--87399 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
87338 TTATTTAATA
*
87348 ATATAAATAATTATTAT
1 ATATTAATAATTATTAT
* *
87365 ATATTAAT-CTTTTTA-
1 ATATTAATAATTATTAT
87380 ATATGTAATAATTATTAT
1 ATAT-TAATAATTATTAT
87398 AT
1 AT
87400 TTATTTATCT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
15 4 0.15
16 9 0.33
17 12 0.44
18 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATTAATAATTATTAT
Found at i:87371 original size:26 final size:24
Alignment explanation
Indices: 87310--87372 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 24
87300 ATATTTTATT
87310 TTTA-ATATTAA-AAATAAATTAA
1 TTTATATATTAATAAATAAATTAA
87332 TTTATATTATTTAATAATATAAA-TAA
1 TTTATA-TA-TTAATAA-ATAAATTAA
87358 TTATTATATATTAAT
1 -T-TTATATATTAAT
87373 CTTTTTAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
22 4 0.12
23 1 0.03
24 2 0.06
25 4 0.12
26 10 0.29
27 8 0.24
28 5 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TTTATATATTAATAAATAAATTAA
Found at i:87402 original size:67 final size:65
Alignment explanation
Indices: 87255--87416 Score: 152
Period size: 64 Copynumber: 2.5 Consensus size: 65
87245 TCCAAAATAA
* * * * * * *
87255 AATAACTATTTTA-TTATAATATTATAATAATCTTAATTATTATTAATATTTTATTTTTAATATT
1 AATAATTATTATATTTATATTATTATAATAATATAAATAATTATTAATATTATATTTTTAATATT
* * *
87319 AAAAATAAATTA-ATTTATATTATT-TAATAATATAAATAATTATTATATATTAATCTTTTTAAT
1 AATAAT-TATTATATTTATATTATTATAATAATATAAATAATTATTA-ATATT-ATATTTTTAAT
87382 ATGT
63 AT-T
87386 AATAATTATTATATTTAT-TTATCTATCAATA
1 AATAATTATTATATTTATATTAT-TAT-AATA
87417 TTAATTATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
64 23 0.30
65 17 0.22
66 19 0.25
67 13 0.17
68 1 0.01
69 4 0.05
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (65 bp):
AATAATTATTATATTTATATTATTATAATAATATAAATAATTATTAATATTATATTTTTAATATT
Found at i:87444 original size:13 final size:14
Alignment explanation
Indices: 87428--87465 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
87418 TAATTATTTT
*
87428 AATTAATACT-ATA
1 AATTAATAATCATA
87441 AATTAATAATCATA
1 AATTAATAATCATA
87455 ATATTAATAAT
1 A-ATTAATAAT
87466 TATTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
14 4 0.18
15 9 0.41
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTAATAATCATA
Found at i:87592 original size:31 final size:28
Alignment explanation
Indices: 87543--87599 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
87533 TGTTATTAAG
87543 AATAATTAATTATTATATAAATTATTTT
1 AATAATTAATTATTATATAAATTATTTT
*
87571 AATAATTAAATTAAATTATATAATTTATT
1 AATAATT-AATT--ATTATATAAATTATT
87600 ACTTATAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 7 0.28
29 4 0.16
31 14 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
AATAATTAATTATTATATAAATTATTTT
Found at i:88436 original size:27 final size:26
Alignment explanation
Indices: 88391--88441 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
88381 ATAATAATTT
88391 ATTTAATATATATAATATTTCAAAAAA
1 ATTTAATATATATAATATTT-AAAAAA
*
88418 ATTTATTAT-TATAATTATTTAAAA
1 ATTTAATATATATAA-TATTTAAAA
88442 CAAACCAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
ATTTAATATATATAATATTTAAAAAA
Found at i:88899 original size:14 final size:14
Alignment explanation
Indices: 88826--88909 Score: 51
Period size: 14 Copynumber: 6.4 Consensus size: 14
88816 GATAATATTG
*
88826 TAATTAAATAT-AT
1 TAATTAATTATAAT
88839 TATATTTAATATATAAT
1 TA-A-TTAAT-TATAAT
88856 T-ATTAA--ATAA-
1 TAATTAATTATAAT
*
88866 AAATTAATT-T-A-
1 TAATTAATTATAAT
88877 TAATT-ATTATAAT
1 TAATTAATTATAAT
88890 TAATTAATTATAAT
1 TAATTAATTATAAT
*
88904 AAATTA
1 TAATTA
88910 GCATTAATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 21
0.69 0.05 0.26
Matches are distributed among these distances:
10 3 0.05
11 15 0.27
12 2 0.04
13 7 0.12
14 18 0.32
15 5 0.09
16 3 0.05
17 3 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTAATTATAAT
Found at i:88909 original size:24 final size:24
Alignment explanation
Indices: 88867--89010 Score: 72
Period size: 24 Copynumber: 6.0 Consensus size: 24
88857 ATTAAATAAA
*
88867 AATTAATTTATAAT-TATTATAATT
1 AATTAA-TTATAATAAATTATAATT
**
88891 AATTAATTATAATAAATTAGCATT
1 AATTAATTATAATAAATTATAATT
* *
88915 AATT--TTTTATTAATATTAATAATAT
1 AATTAATTATAATAA-ATT-ATAAT-T
*
88940 AATTATATTA-AATATATT-T-A-T
1 AATTA-ATTATAATAAATTATAATT
* **
88961 AA-TATTTATAAT-AATTATTTTT
1 AATTAATTATAATAAATTATAATT
88983 AAATTAATTATAATAATAGTTATAATT
1 -AATTAATTATAATAA-A-TTATAATT
89010 A
1 A
89011 GTACCATAAT
Statistics
Matches: 88, Mismatches: 16, Indels: 30
0.66 0.12 0.22
Matches are distributed among these distances:
19 6 0.07
20 6 0.07
21 3 0.03
22 8 0.09
23 13 0.15
24 30 0.34
25 6 0.07
26 5 0.06
27 9 0.10
28 2 0.02
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (24 bp):
AATTAATTATAATAAATTATAATT
Found at i:88952 original size:45 final size:45
Alignment explanation
Indices: 88836--88953 Score: 113
Period size: 44 Copynumber: 2.7 Consensus size: 45
88826 TAATTAAATA
88836 TATT-ATATTTAAT-ATATAA-T-TATTAAATAAAAATTAATTTAT
1 TATTAATA-TTAATAATATAATTATATTAAATAAAAATTAATTTAT
* * * * ** *
88878 AATTATTA-TAATTAAT-TAATTATAATAAATTAGCATTAATTTTT
1 TATTAATATTAA-TAATATAATTATATTAAATAAAAATTAATTTAT
88922 TATTAATATTAATAATATAATTATATTAAATA
1 TATTAATATTAATAATATAATTATATTAAATA
88954 TATTTATAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
41 3 0.05
42 7 0.12
43 5 0.09
44 27 0.47
45 16 0.28
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (45 bp):
TATTAATATTAATAATATAATTATATTAAATAAAAATTAATTTAT
Found at i:89008 original size:33 final size:33
Alignment explanation
Indices: 88937--89010 Score: 80
Period size: 33 Copynumber: 2.2 Consensus size: 33
88927 ATATTAATAA
* *
88937 TATAATTATATTAAATATATTTATAATATTTAT
1 TATAATTATATTAAATATAATTATAATATATAT
* *
88970 AATAATTATTTTTAAAT-TAATTATAATA-ATAGT
1 TATAATTA-TATTAAATATAATTATAATATATA-T
89003 TATAATTA
1 TATAATTA
89011 GTACCATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
32 2 0.06
33 25 0.74
34 7 0.21
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (33 bp):
TATAATTATATTAAATATAATTATAATATATAT
Found at i:89093 original size:3 final size:3
Alignment explanation
Indices: 89087--89130 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
89077 ATTGGATAAA
*
89087 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
89131 TTTAAAGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:89152 original size:9 final size:9
Alignment explanation
Indices: 89090--89153 Score: 58
Period size: 9 Copynumber: 7.1 Consensus size: 9
89080 GGATAAAATT
*
89090 ATTATTATT
1 ATTATTATA
*
89099 ATTATTATT
1 ATTATTATA
89108 ATTATTAT-
1 ATTATTATA
*
89116 ATTATTATC
1 ATTATTATA
*
89125 ATTATTTTTA
1 ATTA-TTATA
**
89135 AAGATTATA
1 ATTATTATA
89144 ATTATTATA
1 ATTATTATA
89153 A
1 A
89154 ATTAATATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
8 8 0.17
9 33 0.72
10 5 0.11
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (9 bp):
ATTATTATA
Found at i:89279 original size:20 final size:20
Alignment explanation
Indices: 89220--89281 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
89210 AAATTAAGTA
89220 AATATAATTAGTTATTAATTATC
1 AATATAATTA-TTA-T-ATTATC
* * *
89243 AAAATTAATTAAT-TATTATT
1 AATA-TAATTATTATATTATC
89263 AATATAATTATTATATTAT
1 AATATAATTATTATATTAT
89282 ATTTCTTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 7 0.22
20 14 0.44
21 1 0.03
23 4 0.12
24 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
AATATAATTATTATATTATC
Found at i:89453 original size:19 final size:18
Alignment explanation
Indices: 89431--89479 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
89421 TATACTTATT
89431 ATAAATTATTATAATAATA
1 ATAAATTATTA-AATAATA
* * *
89450 ATAACTTATGAAATTATA
1 ATAAATTATTAAATAATA
89468 ATTAAATTATTA
1 A-TAAATTATTA
89480 CGTATATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
ATAAATTATTAAATAATA
Found at i:89945 original size:35 final size:35
Alignment explanation
Indices: 89891--89988 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 35
89881 ATGATTTGAA
* * *
89891 ATAGATTATTTTTAAT-ATAATAATA-AATTATTTT
1 ATAG-TTATTATTAATAATTATAATATAATTAATTT
*
89925 ATAG-T-TTATTAATTATTATAATATAATTAATTT
1 ATAGTTATTATTAATAATTATAATATAATTAATTT
*
89958 ATAGTTATTATTAATAATTATATTATAATTA
1 ATAGTTATTATTAATAATTATAATATAATTA
89989 GTTGTAACTA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
31 7 0.13
32 9 0.16
33 12 0.22
34 5 0.09
35 22 0.40
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (35 bp):
ATAGTTATTATTAATAATTATAATATAATTAATTT
Found at i:89955 original size:18 final size:18
Alignment explanation
Indices: 89932--89988 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
89922 TTTATAGTTT
*
89932 ATTAATTATTATAATATA
1 ATTAATTATTATATTATA
*
89950 ATTAA-T-TTATAGTTATT
1 ATTAATTATTATA-TTATA
*
89967 ATTAATAATTATATTATA
1 ATTAATTATTATATTATA
89985 ATTA
1 ATTA
89989 GTTGTAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 5 0.16
17 9 0.28
18 13 0.41
19 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTAATTATTATATTATA
Found at i:89988 original size:21 final size:20
Alignment explanation
Indices: 89964--90010 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
89954 ATTTATAGTT
*
89964 ATTATTAATAATTATATTATA
1 ATTATT-ATAACTATATTATA
*
89985 ATTAGTTGTAACTATATTATA
1 ATTA-TTATAACTATATTATA
90006 ATTAT
1 ATTAT
90011 AAATTGAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 20 0.87
22 2 0.09
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
ATTATTATAACTATATTATA
Found at i:90165 original size:18 final size:17
Alignment explanation
Indices: 90142--90198 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
90132 ATTTAATTAT
90142 ATTATATTTATTATAATA
1 ATTATATTTATTA-AATA
*
90160 ATTATA-TTATTAAAATG
1 ATTATATTTATT-AAATA
* * *
90177 GTTTTATTTATTAATTA
1 ATTATATTTATTAAATA
90194 ATTAT
1 ATTAT
90199 TAATAAATTA
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (17 bp):
ATTATATTTATTAAATA
Found at i:90457 original size:21 final size:21
Alignment explanation
Indices: 90433--90479 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
90423 AACTTATTTG
90433 TTATTATTAATAATTTAATAA
1 TTATTATTAATAATTTAATAA
* * * *
90454 TTATTTTTAGTTATTTGATAA
1 TTATTATTAATAATTTAATAA
90475 TTATT
1 TTATT
90480 CAAATATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAATAATTTAATAA
Found at i:90766 original size:21 final size:21
Alignment explanation
Indices: 90740--90779 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
90730 TATAGTAATA
90740 AATTATTAA-ATAACTTATTGG
1 AATTATTAATAT-ACTTATTGG
90761 AATTATTAATATACTTATT
1 AATTATTAATATACTTATT
90780 ATAGTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (21 bp):
AATTATTAATATACTTATTGG
Found at i:90851 original size:13 final size:13
Alignment explanation
Indices: 90833--90920 Score: 53
Period size: 13 Copynumber: 6.8 Consensus size: 13
90823 ATCTAGTTCG
90833 ATTAATATAA-AAT
1 ATTAAT-TAATAAT
90846 ATTAATTAATAAT
1 ATTAATTAATAAT
90859 ATT-A-TAA-AAT
1 ATTAATTAATAAT
90869 ATTTAATTAATAACT
1 A-TTAATTAATAA-T
*
90884 A--AATATATTAAT
1 ATTAAT-TAATAAT
* *
90896 ATTACTTTAAAAACT
1 ATTA-ATTAATAA-T
90911 ATTAATTAAT
1 ATTAATTAAT
90921 TAAATTTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 21
0.68 0.07 0.25
Matches are distributed among these distances:
10 4 0.07
11 5 0.09
12 10 0.17
13 20 0.34
14 11 0.19
15 8 0.14
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTAATTAATAAT
Found at i:90860 original size:20 final size:21
Alignment explanation
Indices: 90838--90920 Score: 64
Period size: 23 Copynumber: 3.9 Consensus size: 21
90828 GTTCGATTAA
*
90838 TATAAAATATTAATTAATAATAT
1 TATAAAATATTAATTAAT-A-AC
90861 TATAAAATATTTAATTAATAAC
1 TATAAAATA-TTAATTAATAAC
* *
90883 TA-AATATATTAA-T-ATTAC
1 TATAAAATATTAATTAATAAC
*
90901 TTTAAAAACTATTAATTAAT
1 TAT-AAAA-TATTAATTAAT
90921 TAAATTTTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
18 5 0.10
19 1 0.02
20 7 0.14
21 11 0.22
22 4 0.08
23 12 0.24
24 9 0.18
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (21 bp):
TATAAAATATTAATTAATAAC
Found at i:91435 original size:5 final size:4
Alignment explanation
Indices: 91399--91472 Score: 55
Period size: 4 Copynumber: 17.8 Consensus size: 4
91389 TATTTAACTA
* *
91399 AATT ACTT AATT -ATT AATGTT AAATT AATT AACTT AATT TATT AATT
1 AATT AATT AATT AATT AA--TT -AATT AATT AA-TT AATT AATT AATT
91446 AATT -A-T AATT AATAT AATT ATATT AAT
1 AATT AATT AATT AAT-T AATT A-ATT AAT
91473 ATTATATTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
2 1 0.02
3 5 0.09
4 33 0.58
5 14 0.25
6 2 0.04
7 2 0.04
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:91454 original size:27 final size:26
Alignment explanation
Indices: 91399--91472 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
91389 TATTTAACTA
91399 AATT-ACTTAA-TTATTAATGTTAAATT
1 AATTAACTTAATTTATTAA--TTAAATT
*
91425 AATTAACTTAATTTATTAATTAATTAT
1 AATTAACTTAATTTATTAATTAAAT-T
91452 AATTAA-TATAATTATATTAAT
1 AATTAACT-TAATT-TATTAAT
91473 ATTATATTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
26 10 0.24
27 18 0.43
28 14 0.33
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (26 bp):
AATTAACTTAATTTATTAATTAAATT
Found at i:91493 original size:31 final size:33
Alignment explanation
Indices: 91453--91550 Score: 88
Period size: 31 Copynumber: 3.2 Consensus size: 33
91443 ATTAATTATA
**
91453 ATTAATATAATTATATTAATATT-ATATTTATT
1 ATTAATATAATTATATTAATATTAATATGAATT
* *
91485 A-TAATATAAATATAATAA-ATTAATATGAATT
1 ATTAATATAATTATATTAATATTAATATGAATT
91516 ATTAAT-T-A-TATA-TAATATTAATA--AATGT
1 ATTAATATAATTATATTAATATTAATATGAAT-T
91544 ATTAATA
1 ATTAATA
91551 ATTTATCATA
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
27 3 0.05
28 10 0.18
29 11 0.19
30 4 0.07
31 24 0.42
32 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (33 bp):
ATTAATATAATTATATTAATATTAATATGAATT
Found at i:91530 original size:42 final size:42
Alignment explanation
Indices: 91455--91538 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
91445 TAATTATAAT
*
91455 TAATATAATTATATTAATATTATATTTATTATAATATAAATA
1 TAATATAATTATATGAATATTATATTTATTATAATATAAATA
*
91497 TAATA-AATTAATATGAATTATTA-A-TTATATATAATATTAATA
1 TAATATAATT-ATATGAA-TATTATATTTAT-TATAATATAAATA
91539 AATGTATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
41 8 0.22
42 24 0.65
43 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (42 bp):
TAATATAATTATATGAATATTATATTTATTATAATATAAATA
Found at i:91553 original size:31 final size:31
Alignment explanation
Indices: 91459--91564 Score: 82
Period size: 31 Copynumber: 3.5 Consensus size: 31
91449 TATAATTAAT
*
91459 ATAATTATAT-TAATATT-AT--ATTTATT-
1 ATAATTATATATAATATTAATAAATGTATTA
* *
91485 ATAATATAAATATAATA--AATTAATATGAATTA
1 ATAAT-TATATATAATATTAA-TAA-ATGTATTA
*
91517 TTAATTATATATAATATTAATAAATGTATTA
1 ATAATTATATATAATATTAATAAATGTATTA
91548 ATAATTTATCATATAAT
1 ATAA-TTAT-ATATAAT
91565 TAATATACAA
Statistics
Matches: 61, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
26 5 0.08
27 5 0.08
28 6 0.10
31 25 0.41
32 11 0.18
33 9 0.15
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (31 bp):
ATAATTATATATAATATTAATAAATGTATTA
Found at i:91626 original size:19 final size:15
Alignment explanation
Indices: 91451--91628 Score: 52
Period size: 17 Copynumber: 11.5 Consensus size: 15
91441 TAATTAATTA
91451 TAATTAATA-TA-AT
1 TAATTAATATTATAT
91464 TATATTAATATTATATT
1 TA-ATTAATATTATA-T
*
91481 TATTATAATATAAATATAAT
1 TAAT-TAATAT---TAT-AT
* *
91501 AAATTAATATGAATTAT
1 TAATTAATAT-TA-TAT
*
91518 TAATTATATATAATAT
1 TAATTA-ATATTATAT
*
91534 TAA-TAA-A-TGTAT
1 TAATTAATATTATAT
91546 TAA-TAAT-TTATCAT
1 TAATTAATATTAT-AT
* * *
91560 ATAATTAATATACAAAA
1 -TAATTAATAT-TATAT
* *
91577 TATATTTA-ATTGTAT
1 TA-ATTAATATTATAT
91592 TAATTAATATTATAT
1 TAATTAATATTATAT
91607 TAATTTAATAATTA-AT
1 TAA-TTAAT-ATTATAT
91623 T-ATTAA
1 TAATTAA
91629 ATAGTTATAA
Statistics
Matches: 124, Mismatches: 19, Indels: 43
0.67 0.10 0.23
Matches are distributed among these distances:
12 9 0.07
13 5 0.04
14 18 0.15
15 20 0.16
16 24 0.19
17 29 0.23
18 6 0.05
19 6 0.05
20 6 0.05
21 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (15 bp):
TAATTAATATTATAT
Found at i:92005 original size:23 final size:23
Alignment explanation
Indices: 91979--92037 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
91969 TATTAAATTG
91979 ATAAATTATAATAATTTA-AATA
1 ATAAATTATAATAATTTATAATA
* * *
92001 CATAAACTAAAATAATTTATATTA
1 -ATAAATTATAATAATTTATAATA
92025 ATAATATTATAAT
1 ATAA-ATTATAAT
92038 TTAAGAGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (23 bp):
ATAAATTATAATAATTTATAATA
Found at i:92119 original size:17 final size:18
Alignment explanation
Indices: 92087--92131 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 18
92077 TAGTTTATCC
92087 ATTTAATATTATATTT-ATA
1 ATTTAATA--ATATTTAATA
92106 ATTTAATAATATTTAATA
1 ATTTAATAATATTTAATA
92124 A-TTAATAA
1 ATTTAATAA
92132 ATTATTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 13 0.52
18 4 0.16
19 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTAATAATATTTAATA
Found at i:92267 original size:12 final size:12
Alignment explanation
Indices: 92252--92294 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
92242 TATAATTTTT
*
92252 ATAATTAATATT
1 ATAATTAATATA
*
92264 ATAATAAATATA
1 ATAATTAATATA
92276 AT-ATATAATATA
1 ATAAT-TAATATA
92288 ATAATTA
1 ATAATTA
92295 TAATGATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAATTAATATA
Found at i:92275 original size:21 final size:22
Alignment explanation
Indices: 92233--92307 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 22
92223 CCAAAAATAG
* ***
92233 ATTATAAAATATAATTTTTATA
1 ATTATATAATATAATAAATATA
*
92255 ATTA-ATATTATAATAAATATA
1 ATTATATAATATAATAAATATA
*
92276 A-TATATAATATAATAATTATA
1 ATTATATAATATAATAAATATA
* *
92297 ATGATTTAATA
1 ATTATATAATA
92308 ATCTATAACC
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
20 2 0.05
21 29 0.69
22 11 0.26
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (22 bp):
ATTATATAATATAATAAATATA
Found at i:92481 original size:15 final size:15
Alignment explanation
Indices: 92461--92490 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
92451 AAAATCAAGC
92461 TTATTATATATATAA
1 TTATTATATATATAA
92476 TTATTATATATATAA
1 TTATTATATATATAA
92491 GTATAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATTATATATATAA
Found at i:92578 original size:22 final size:22
Alignment explanation
Indices: 92553--92597 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
92543 TTTATATTCA
92553 AATAG-TATATAAATAATAATTT
1 AATAGTTAT-TAAATAATAATTT
* *
92575 AATAGTTATTATATAATATTTT
1 AATAGTTATTAAATAATAATTT
92597 A
1 A
92598 TATAAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
AATAGTTATTAAATAATAATTT
Found at i:92869 original size:19 final size:21
Alignment explanation
Indices: 92823--92870 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
92813 ATAAATAAAT
*
92823 ACTATTATATAATAGTATTATT
1 ACTATTATATAATA-TATTATC
*
92845 AGTATTATATAAT-T-TTATC
1 ACTATTATATAATATATTATC
92864 ACTATTA
1 ACTATTA
92871 CTTTTATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 10 0.43
20 1 0.04
22 12 0.52
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (21 bp):
ACTATTATATAATATATTATC
Found at i:92921 original size:20 final size:20
Alignment explanation
Indices: 92893--92938 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
92883 ATTTATATTT
*
92893 AATAATTAAATATAAAT-ATA
1 AATATTTAAAT-TAAATGATA
*
92913 AATATTTAAATTAATTGATA
1 AATATTTAAATTAAATGATA
92933 AATATT
1 AATATT
92939 AATTTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AATATTTAAATTAAATGATA
Found at i:92962 original size:21 final size:22
Alignment explanation
Indices: 92912--92963 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
92902 ATATAAATAT
92912 AAAT-ATTTAAATTAATTGATA
1 AAATAATTTAAATTAATTGATA
92933 AATATTAATTTATAATT-ATT-ATA
1 AA-A-TAATTTA-AATTAATTGATA
92956 AAATAATT
1 AAATAATT
92964 ATCATTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
21 7 0.26
22 2 0.07
23 6 0.22
24 8 0.30
25 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AAATAATTTAAATTAATTGATA
Found at i:93195 original size:18 final size:16
Alignment explanation
Indices: 93172--93218 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 16
93162 TATTTATCCT
93172 ATTTAATAATATAAACTA
1 ATTTAATAAT-TAAA-TA
93190 ATTTAAATAATTAAATA
1 ATTT-AATAATTAAATA
93207 A-TTAATAATTAA
1 ATTTAATAATTAA
93219 TATTAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.32
16 2 0.07
17 3 0.11
18 8 0.29
19 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTTAATAATTAAATA
Found at i:93257 original size:16 final size:17
Alignment explanation
Indices: 93226--93261 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
93216 TAATATTAAA
93226 AATTATGTAATAATTAT
1 AATTATGTAATAATTAT
*
93243 AATTAT-TAATGATTAT
1 AATTATGTAATAATTAT
93259 AAT
1 AAT
93262 ATTTTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
AATTATGTAATAATTAT
Found at i:93320 original size:15 final size:15
Alignment explanation
Indices: 93236--93321 Score: 54
Period size: 15 Copynumber: 5.9 Consensus size: 15
93226 AATTATGTAA
93236 TAATTATAAT--TAT
1 TAATTATAATAATAT
* *
93249 TAATGATTATAATAT
1 TAATTATAATAATAT
* * * *
93264 T-TTTATTATAAAAA
1 TAATTATAATAATAT
* * *
93278 TACTTATATTTATAT
1 TAATTATAATAATAT
93293 TAATTA-AATTAATAT
1 TAATTATAA-TAATAT
93308 TAATTATAATAATA
1 TAATTATAATAATA
93322 AATAATAGTC
Statistics
Matches: 53, Mismatches: 15, Indels: 8
0.70 0.20 0.11
Matches are distributed among these distances:
13 8 0.15
14 11 0.21
15 32 0.60
16 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (15 bp):
TAATTATAATAATAT
Found at i:93534 original size:26 final size:25
Alignment explanation
Indices: 93481--93563 Score: 64
Period size: 26 Copynumber: 3.3 Consensus size: 25
93471 CAATAAAATA
93481 ATATTGAATAATATTATGATTAACTT
1 ATATT-AATAATATTATGATTAACTT
* *
93507 ATTATTAATAATATGTATGCTTTA-TT
1 A-TATTAATAATAT-TATGATTAACTT
* * *
93533 ATATTTATAAATATTTTAATTAA-TT
1 ATATTAAT-AATATTATGATTAACTT
93558 A-ATTAA
1 ATATTAA
93564 AGTTTATAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
24 4 0.09
25 14 0.30
26 17 0.37
27 11 0.24
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (25 bp):
ATATTAATAATATTATGATTAACTT
Found at i:93625 original size:18 final size:20
Alignment explanation
Indices: 93604--93653 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 20
93594 CAATATAAAA
93604 AATAAATTTAATA-T-GAAT
1 AATAAATTTAATATTCGAAT
*
93622 AATAATATTT-ATATTCGTAT
1 AATAA-ATTTAATATTCGAAT
93642 -ATAAATTTAATA
1 AATAAATTTAATA
93654 ATAAGTTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 12 0.44
19 12 0.44
20 3 0.11
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (20 bp):
AATAAATTTAATATTCGAAT
Found at i:94201 original size:22 final size:22
Alignment explanation
Indices: 94176--94246 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
94166 TTATTTATCA
*
94176 ATATTAAAATGATAGTTTATTT
1 ATATTAAAATAATAGTTTATTT
*
94198 ATA-TATTAATAATAGTTTATTT
1 ATATTA-AAATAATAGTTTATTT
* *
94220 CATAATTAAATATTATA-TTAATTT
1 -AT-ATTAAA-ATAATAGTTTATTT
94244 ATA
1 ATA
94247 AATATTAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
21 2 0.05
22 18 0.46
23 4 0.10
24 8 0.21
25 7 0.18
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (22 bp):
ATATTAAAATAATAGTTTATTT
Found at i:94260 original size:26 final size:25
Alignment explanation
Indices: 94162--94270 Score: 79
Period size: 26 Copynumber: 4.4 Consensus size: 25
94152 ATATTGATCG
* *
94162 ATATTTATTTATCAATATTAA-AATG
1 ATATTAATTTAT-AATATTAATAATT
*
94187 ATAGTTTATTTAT-ATATTAATAA-T
1 ATA-TTAATTTATAATATTAATAATT
*
94211 AGT-TT-ATTTCATAAT-TAAAT-ATT
1 A-TATTAATTT-ATAATATTAATAATT
94234 ATATTAATTTATAAATATTAATAATT
1 ATATTAATTTAT-AATATTAATAATT
*
94260 AAATTAATTTA
1 ATATTAATTTA
94271 ATTGTTAAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 21
0.73 0.04 0.22
Matches are distributed among these distances:
22 6 0.09
23 14 0.20
24 17 0.25
25 10 0.14
26 22 0.32
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (25 bp):
ATATTAATTTATAATATTAATAATT
Found at i:94745 original size:27 final size:27
Alignment explanation
Indices: 94713--94764 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94703 GTAATTTTAA
94713 TAATTATT-TATAAATTAATTAAATATT
1 TAATTATTAT-TAAATTAATTAAATATT
* *
94740 TAATTATTATTTAATTAATTTAATA
1 TAATTATTATTAAATTAATTAAATA
94765 ATTGTATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
TAATTATTATTAAATTAATTAAATATT
Found at i:94746 original size:23 final size:23
Alignment explanation
Indices: 94711--94757 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
94701 TAGTAATTTT
*
94711 AATAATTATTTATAAATTAATTA
1 AATAATTAATTATAAATTAATTA
* * *
94734 AATATTTAATTATTATTTAATTA
1 AATAATTAATTATAAATTAATTA
94757 A
1 A
94758 TTTAATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATAATTAATTATAAATTAATTA
Found at i:94906 original size:18 final size:17
Alignment explanation
Indices: 94883--94935 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
94873 TTAATTTTAT
*
94883 ATTAATTAACTAATATAA
1 ATTAATTAAAT-ATATAA
94901 ATTAATTTAAATATATAA
1 ATTAA-TTAAATATATAA
*
94919 ATT-ATTAATTAT-TAA
1 ATTAATTAAATATATAA
94934 AT
1 AT
94936 ATTTAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 5 0.16
16 7 0.22
17 1 0.03
18 14 0.44
19 5 0.16
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAATTAAATATATAA
Found at i:94930 original size:7 final size:7
Alignment explanation
Indices: 94918--94979 Score: 54
Period size: 7 Copynumber: 8.4 Consensus size: 7
94908 TAAATATATA
94918 AATTATT
1 AATTATT
94925 AATTATT
1 AATTATT
*
94932 AAATATTT
1 AATTA-TT
94940 AATTTATT
1 AA-TTATT
*
94948 AATGATT
1 AATTATT
94955 ATATTAATT
1 A-ATT-ATT
*
94964 TATTATT
1 AATTATT
94971 -ATTATT
1 AATTATT
94977 AAT
1 AAT
94980 AAATATATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
6 6 0.13
7 21 0.47
8 13 0.29
9 5 0.11
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (7 bp):
AATTATT
Found at i:94936 original size:23 final size:22
Alignment explanation
Indices: 94907--94974 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
94897 ATAAATTAAT
*
94907 TTAAATATATAAATTATTAATTA
1 TTAAATAT-TAATTTATTAATTA
*
94930 TTAAATATTTAATTTATTAATGA
1 TTAAATA-TTAATTTATTAATTA
94953 TT--ATATTAATTTATT-ATTA
1 TTAAATATTAATTTATTAATTA
94972 TTA
1 TTA
94975 TTAATAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 5 0.12
20 10 0.25
21 3 0.08
23 21 0.52
24 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (22 bp):
TTAAATATTAATTTATTAATTA
Found at i:94948 original size:16 final size:19
Alignment explanation
Indices: 94921--94968 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
94911 ATATATAAAT
94921 TATTAA-TTATTAA-A-TA
1 TATTAATTTATTAAGATTA
94937 T-TTAATTTATTAATGATTA
1 TATTAATTTATTAA-GATTA
94956 TATTAATTTATTA
1 TATTAATTTATTA
94969 TTATTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.15
16 8 0.30
18 1 0.04
19 3 0.11
20 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TATTAATTTATTAAGATTA
Found at i:94990 original size:23 final size:23
Alignment explanation
Indices: 94908--94990 Score: 55
Period size: 23 Copynumber: 3.5 Consensus size: 23
94898 TAAATTAATT
* *
94908 TAAATATATA-AATTATTAATTAT
1 TAAATATATATTATTATT-ATTAA
* *
94931 TAAATATTTAATTTATTAATGATTATA
1 TAAATATAT-A-TTATT-ATTATTA-A
*
94958 TTAAT-T-TATTATTATTATTAA
1 TAAATATATATTATTATTATTAA
94979 TAAATATATATT
1 TAAATATATATT
94991 TATTGAATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
21 5 0.11
22 7 0.15
23 17 0.37
24 2 0.04
25 1 0.02
26 8 0.17
27 6 0.13
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
TAAATATATATTATTATTATTAA
Found at i:95416 original size:181 final size:181
Alignment explanation
Indices: 95088--95569 Score: 427
Period size: 181 Copynumber: 2.7 Consensus size: 181
95078 TAATATCATT
* * * ** * * * * **
95088 AATAATACTAATTTATTAATATTT-AAAAATTAATCAGTAAGAGATTTAAAAAGTAAATTTGCGT
1 AATAAAACTAATTTAATAATATTTCAAAAATTAATAACCAAAAGAATTAAAAAATAAATCT-AAT
* * ** ** * * *
95152 T-CAAAACCATTTC-AAATAGTTTTAACTATTTTAAAAATTATCTATTTCGAATCGTTATAACCT
65 TACCAAACCAGTTCAAAATAGTTAAAACTATTAGAATAATTATCTATTTCAAATCATTATAACCT
* * **
95215 TTTATTTTATCATCAAACAATCGATTATGTTTATACTATTTTATTTGGAATAA
130 TTTATTTTATCATAAAACAAT-GATTATGTTTATACAAGCTTATTTGGAATAA
** * *
95268 AATAAAACTAATTTAATAATATTTTGAAACTTAATAACCAAGAA-AATTAAAATATAAATCTAAT
1 AATAAAACTAATTTAATAATATTTCAAAAATTAATAACCAA-AAGAATTAAAAAATAAATCTAAT
* * ** * * **
95332 TGCCGAACCA-TTTGAAATAGTTAAGACTA-TATGAATGATTATCTATTTCAAATCATTATGGCC
65 TACCAAACCAGTTCAAAATAGTTAAAACTATTA-GAATAATTATCTATTTCAAATCATTATAACC
* * * * * * *
95395 TTTTCTTTTGTCGTAAAACAATTATTTTGTTTGTACAAGCTTATTTGGATTAA
129 TTTTATTTTATCATAAAACAATGATTATGTTTATACAAGCTTATTTGGAATAA
* * * * **
95448 AATAATACTAATTTAATAATATTTCAAAAATTAATAACTAAAAGATTTAAAAAATAAATTTGTTT
1 AATAAAACTAATTTAATAATATTTCAAAAATTAATAACCAAAAGAATTAAAAAATAAATCTAATT
* *
95513 ACCAAATCAGTTCAAAATGGTTAAAACTATTAGAATAATTATCTATTTCAAATCATT
66 ACCAAACCAGTTCAAAATAGTTAAAACTATTAGAATAATTATCTATTTCAAATCATT
95570 CTGATATTAT
Statistics
Matches: 237, Mismatches: 57, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
179 2 0.01
180 109 0.46
181 123 0.52
182 3 0.01
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AATAAAACTAATTTAATAATATTTCAAAAATTAATAACCAAAAGAATTAAAAAATAAATCTAATT
ACCAAACCAGTTCAAAATAGTTAAAACTATTAGAATAATTATCTATTTCAAATCATTATAACCTT
TTATTTTATCATAAAACAATGATTATGTTTATACAAGCTTATTTGGAATAA
Found at i:95660 original size:28 final size:28
Alignment explanation
Indices: 95627--95683 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
95617 ACAATTATAC
95627 TAATAATT-TA-TAACTATTTATAAATAAT
1 TAATAATTATATTAACTA-TTAT-AATAAT
*
95655 TAATAATTATATTAATTATTATAATAAT
1 TAATAATTATATTAACTATTATAATAAT
95683 T
1 T
95684 TAAGTATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 15 0.58
29 6 0.23
30 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (28 bp):
TAATAATTATATTAACTATTATAATAAT
Found at i:96890 original size:155 final size:157
Alignment explanation
Indices: 96723--97048 Score: 347
Period size: 158 Copynumber: 2.1 Consensus size: 157
96713 TTAATAAGTA
* * * * *
96723 AAAATTTTAAAAATAAATATATTT-TCTAAAC-ATGTTCAAATAGTTATGACTATTTGAACAATT
1 AAAATTTAAAAAATAAATATATTTAT-TAAACGA-ATTCAAATAGATATGACTACTTAAACAATT
* * * *
96786 A-TCTATTTCAAATCATTATGACCTTTT-TTTGTCATACACCAATTGTTTCTATTCATA-AAGGC
64 ATTCTATTTCAAATCATTATGACATTTTATTTGTCATAAAACAATAGTTTCTATTCATACAA-GC
* *
96848 TTATTCAGAATAAAATAATATTAATTTATT
128 TTATTCAAAATAAAATAATACTAATTTATT
* * * * *
96878 AAAATTTAAAAAATAAATTTGTTTATTGAGCGAATTCAAATAGATATGACTACTTAAATAATTAT
1 AAAATTTAAAAAATAAATATATTTATTAAACGAATTCAAATAGATATGACTACTTAAACAATTAT
* ** * * * *
96943 TTTATTTCAAATTGTTATGATATTTTGATTTTTCATAAAACAATAGTTTCTATTCGTACAAGTTT
66 TCTATTTCAAATCATTATGACATTTT-ATTTGTCATAAAACAATAGTTTCTATTCATACAAGCTT
*
97008 ATTCAAAATAAGATAATACTAATTTATT
130 ATTCAAAATAAAATAATACTAATTTATT
*
97036 AATATTCTAAAAA
1 AAAATT-TAAAAA
97049 TTAATAAGTT
Statistics
Matches: 139, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
155 50 0.36
156 23 0.17
158 58 0.42
159 8 0.06
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (157 bp):
AAAATTTAAAAAATAAATATATTTATTAAACGAATTCAAATAGATATGACTACTTAAACAATTAT
TCTATTTCAAATCATTATGACATTTTATTTGTCATAAAACAATAGTTTCTATTCATACAAGCTTA
TTCAAAATAAAATAATACTAATTTATT
Found at i:97033 original size:158 final size:156
Alignment explanation
Indices: 96757--97048 Score: 363
Period size: 158 Copynumber: 1.9 Consensus size: 156
96747 TCTAAACATG
* * * *
96757 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTTTTGTCATA
1 TTCAAATAGATATGACTACTTAAACAATTATCTATTTCAAATCATTATGACATTTTTTTGTCATA
* * * * *
96822 CACCAATTGTTTCTATTCATAAAGGCTTATTCAGAATAAAATAATATTAATTTATTAAAATT-TA
66 AAACAATAGTTTCTATTCATAAAGGCTTATTCAAAATAAAATAATACTAATTTATTAAAATTCTA
96886 AAAAATAAATTTGTTTATTGAGCGAA
131 AAAAATAAATTTGTTTATTGAGCGAA
* * ** * *
96912 TTCAAATAGATATGACTACTTAAATAATTATTTTATTTCAAATTGTTATGATATTTTGATTTTTC
1 TTCAAATAGATATGACTACTTAAACAATTA-TCTATTTCAAATCATTATGACATTTT--TTTGTC
* * * *
96977 ATAAAACAATAGTTTCTATTCGTACAA-GTTTATTCAAAATAAGATAATACTAATTTATTAATAT
63 ATAAAACAATAGTTTCTATTCATA-AAGGCTTATTCAAAATAAAATAATACTAATTTATTAAAAT
97041 TCTAAAAA
127 TCTAAAAA
97049 TTAATAAGTT
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
155 26 0.23
156 21 0.19
158 58 0.51
159 8 0.07
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.43
Consensus pattern (156 bp):
TTCAAATAGATATGACTACTTAAACAATTATCTATTTCAAATCATTATGACATTTTTTTGTCATA
AAACAATAGTTTCTATTCATAAAGGCTTATTCAAAATAAAATAATACTAATTTATTAAAATTCTA
AAAAATAAATTTGTTTATTGAGCGAA
Found at i:97307 original size:16 final size:17
Alignment explanation
Indices: 97275--97307 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
97265 AACCAGTTCA
97275 AATAGTTATAACTATTTG
1 AATAGTTAT-ACTATTTG
97293 AATAGTTAT-CTATTT
1 AATAGTTATACTATTT
97308 CAAATTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (17 bp):
AATAGTTATACTATTTG
Found at i:97379 original size:176 final size:175
Alignment explanation
Indices: 96912--97379 Score: 505
Period size: 181 Copynumber: 2.6 Consensus size: 175
96902 ATTGAGCGAA
* * * *
96912 TTCAAATAGATATGACTACTTAAATAATTATTTTATTTCAAATTGTTATGATATTTTGATTTT-T
1 TTCAAATAGTTATGACTATTTAAAT-ATTA-TCTATTTCAAATTGTTATGAT-CTTTG-TTTTGT
* * ** * *
96976 CATAAAACAATAGTTTCTATTCGTACAAGTTTATTCAAAATAAGATAATACTAATTTATTAATAT
62 CATAAAACAATTGTTTCTATTCATACAAAATTATTC-GAATAAAATAATACTAATTTATTAATAT
97041 TCTAAAAATTAATAAGTTGGAGATTTAAATAATAAATATGTTTACCAAACAAG
126 TCTAAAAATTAATAA---GGAGATTTAAATAATAAATATGTTTACCAAACAAG
* * * ** * *
97094 TTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAATCATTAGGA-CATTTTGCTTTGTC
1 TTCAAATAGTTATGACTATTTAAA-TATTATCTATTTCAAATTGTTATGATC--TTTGTTTTGTC
* *
97158 ATAAAACAATTGTTTCTATTCATACAAAATTATTCAGAATAAAATAATATTATTTTATTAATATT
63 ATAAAACAATTGTTTCTATTCATACAAAATTATTC-GAATAAAATAATACTAATTTATTAATATT
* * * *
97223 TTGAAAATTAATAA-GAGATTTAAA-AACTAAATCTGTTT-CCTAAACCAG
127 CTAAAAATTAATAAGGAGATTTAAATAA-TAAATATGTTTACC-AAACAAG
* * *
97271 TTCAAATAGTTATAACTATTTGAATAGTTATCTATTTCAAATTGGTATGATCTTTGTTTTGTCAT
1 TTCAAATAGTTATGACTATTTAAATA-TTATCTATTTCAAATTGTTATGATCTTTGTTTTGTCAT
* *
97336 AAAATAATTGTTTCTATTCATACAAACTTATTCGAAGTAAAATA
65 AAAACAATTGTTTCTATTCATACAAAATTATTCGAA-TAAAATA
97380 TGGTAAACTA
Statistics
Matches: 242, Mismatches: 35, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
175 3 0.01
176 56 0.23
177 64 0.26
178 1 0.00
180 3 0.01
181 91 0.38
182 23 0.10
183 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.41
Consensus pattern (175 bp):
TTCAAATAGTTATGACTATTTAAATATTATCTATTTCAAATTGTTATGATCTTTGTTTTGTCATA
AAACAATTGTTTCTATTCATACAAAATTATTCGAATAAAATAATACTAATTTATTAATATTCTAA
AAATTAATAAGGAGATTTAAATAATAAATATGTTTACCAAACAAG
Found at i:97479 original size:7 final size:7
Alignment explanation
Indices: 97443--97484 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
97433 ATTGAGTTAA
97443 TAATTAT
1 TAATTAT
*
97450 T-ACTAT
1 TAATTAT
97456 TAATTA-
1 TAATTAT
97462 TAATCTAT
1 TAAT-TAT
97470 TAATTAT
1 TAATTAT
97477 TAATTAT
1 TAATTAT
97484 T
1 T
97485 GCTAATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
6 9 0.30
7 17 0.57
8 4 0.13
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (7 bp):
TAATTAT
Found at i:97607 original size:28 final size:29
Alignment explanation
Indices: 97558--97639 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 29
97548 TAATATTATG
97558 ATTATATTATAATTCATT-TTAATA-ATAAT
1 ATTAT-TTATAATT-ATTATTAATATATAAT
97587 ATTATTTATAATTATTATTAATATATAAT
1 ATTATTTATAATTATTATTAATATATAAT
* * *
97616 ATTA-ATATAAATGTTATTAATATA
1 ATTATTTATAATTATTATTAATATA
97640 ACTTAAATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
27 3 0.06
28 31 0.65
29 14 0.29
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (29 bp):
ATTATTTATAATTATTATTAATATATAAT
Found at i:98391 original size:26 final size:24
Alignment explanation
Indices: 98355--98416 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 24
98345 TAAATTTAAT
98355 TAATAATAAATAATCATTAATATATTA
1 TAAT-ATAAATAAT-ATTAATA-ATTA
* *
98382 TAATTTAAATTTATATTAATAATTA
1 TAATATAAA-TAATATTAATAATTA
98407 TAATATAAAT
1 TAATATAAAT
98417 TATAATTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 1 0.03
25 12 0.39
26 11 0.35
27 7 0.23
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TAATATAAATAATATTAATAATTA
Found at i:98469 original size:18 final size:17
Alignment explanation
Indices: 98438--98471 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
98428 ACTATCAATA
98438 AATTAAATTAAATTTTT
1 AATTAAATTAAATTTTT
*
98455 AATTATAATTTAATTTT
1 AATTA-AATTAAATTTT
98472 ATCTATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTAAATTAAATTTTT
Found at i:98695 original size:15 final size:15
Alignment explanation
Indices: 98677--98716 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
98667 TAAAATGAAT
*
98677 AATAATATTATTATC
1 AATAATATAATTATC
*
98692 AATAATATAATTATT
1 AATAATATAATTATC
98707 AA-AATATAAT
1 AATAATATAAT
98717 ATATAGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAATATAATTATC
Done.