Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168393.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_61, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142147
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 4 of 5
Found at i:98782 original size:29 final size:27
Alignment explanation
Indices: 98748--98809 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 27
98738 ATTAACAAAT
* *
98748 TATTATTTATTATTATAAACAATATTAA
1 TATTATTTAATAATATAAACAA-ATTAA
*
98776 TAATTATTTAATAATATAAATAAATTAA
1 T-ATTATTTAATAATATAAACAAATTAA
98804 TATTAT
1 TATTAT
98810 AATTTACAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 5 0.17
28 7 0.23
29 18 0.60
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
TATTATTTAATAATATAAACAAATTAA
Found at i:99497 original size:15 final size:14
Alignment explanation
Indices: 99471--99503 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
99461 TAATAAGCTA
99471 ATATTTTATATATT
1 ATATTTTATATATT
99485 ATATTTATATATATT
1 ATATTT-TATATATT
99500 ATAT
1 ATAT
99504 ATAGTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
ATATTTTATATATT
Found at i:99520 original size:24 final size:24
Alignment explanation
Indices: 99471--99521 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
99461 TAATAAGCTA
* * *
99471 ATATTTTATATATTATATTTATAT
1 ATATTATATATATTATATTGAAAT
99495 ATATTATATATAGTTA-ATTGAAAT
1 ATATTATATATA-TTATATTGAAAT
99519 ATA
1 ATA
99522 ATAATTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
ATATTATATATATTATATTGAAAT
Found at i:101011 original size:25 final size:25
Alignment explanation
Indices: 100983--101033 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
100973 ATAATTAATG
* *
100983 TTAATATA-TATAATTATTTATATAA
1 TTAATATATTAAAATTATATA-ATAA
101008 TTAATATATTAAAATTATATAATAA
1 TTAATATATTAAAATTATATAATAA
101033 T
1 T
101034 AAATTGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
TTAATATATTAAAATTATATAATAA
Found at i:101530 original size:22 final size:21
Alignment explanation
Indices: 101479--101540 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
101469 AATTATAAAC
*
101479 AATTATTAAGTTTATATTAT-T
1 AATTATTAA-TATATATTATAT
101500 AATTATTAATAATATATTATAT
1 AATTATTAAT-ATATATTATAT
*
101522 ACTTATTAATAT-TATTATA
1 AATTATTAATATATATTATA
101541 CTATTACTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.22
21 19 0.51
22 10 0.27
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (21 bp):
AATTATTAATATATATTATAT
Found at i:101535 original size:17 final size:17
Alignment explanation
Indices: 101513--101546 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
101503 TATTAATAAT
101513 ATATTA-TATACTTATTA
1 ATATTATTATAC-TATTA
101530 ATATTATTATACTATTA
1 ATATTATTATACTATTA
101547 CTGATTGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATTATTATACTATTA
Found at i:102016 original size:24 final size:22
Alignment explanation
Indices: 101981--102025 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
101971 TAAAACAAAC
101981 ATTAAATAAATATAT-AATTAAT
1 ATTAAATAAATA-ATCAATTAAT
102003 ATTAAATTAGAATAATCAATTAA
1 ATTAAA-TA-AATAATCAATTAA
102026 GTCATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTAAATAAATAATCAATTAAT
Found at i:102394 original size:15 final size:15
Alignment explanation
Indices: 102374--102427 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
102364 ATTTAACAAT
102374 TTAATATATTTAATA
1 TTAATATATTTAATA
*
102389 TTAATATAATTAATA
1 TTAATATATTTAATA
*
102404 TT-ATATTTTTTAATA
1 TTAATA-TATTTAATA
102419 -TAATA-ATTT
1 TTAATATATTT
102428 TAAATAATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.09
14 4 0.12
15 26 0.79
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:102880 original size:22 final size:22
Alignment explanation
Indices: 102855--102918 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 22
102845 TTATTATCAG
*
102855 TTAAATATTTTA-ATTAAATTAA
1 TTAAATATTTAATATTAAATT-A
*
102877 TTAATTA-TTAATATTAAATTA
1 TTAAATATTTAATATTAAATTA
* *
102898 TT-AATA-TTACTAATAAATTA
1 TTAAATATTTAATATTAAATTA
102918 T
1 T
102919 AATTATAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 16 0.44
21 6 0.17
22 14 0.39
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TTAAATATTTAATATTAAATTA
Found at i:102887 original size:20 final size:20
Alignment explanation
Indices: 102867--102958 Score: 79
Period size: 20 Copynumber: 4.7 Consensus size: 20
102857 AAATATTTTA
102867 ATTAAATTAATTAATTATTAAT
1 ATTAAATT-ATTAATTATT-AT
102889 ATTAAATTATTAA-TATTACT
1 ATTAAATTATTAATTATTA-T
*
102909 AATAAATTA-TAATTA-TA-
1 ATTAAATTATTAATTATTAT
*
102926 ATT--ATTATTAATTATTTT
1 ATTAAATTATTAATTATTAT
*
102944 ATATAAATAATTAAT
1 AT-TAAATTATTAAT
102959 ATTTGCTAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
15 4 0.07
16 6 0.10
17 3 0.05
18 2 0.03
19 7 0.12
20 15 0.26
21 13 0.22
22 8 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAAATTATTAATTATTAT
Found at i:102898 original size:14 final size:14
Alignment explanation
Indices: 102879--102906 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102869 TAAATTAATT
102879 AATTATTAATATTA
1 AATTATTAATATTA
102893 AATTATTAATATTA
1 AATTATTAATATTA
102907 CTAATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTATTAATATTA
Found at i:103254 original size:20 final size:19
Alignment explanation
Indices: 103195--103259 Score: 64
Period size: 18 Copynumber: 3.5 Consensus size: 19
103185 TTTTAAATTA
*
103195 ATAAATTAAATTAATTATT
1 ATAAGTTAAATTAATTATT
* *
103214 -TAATTTATATTAA-TATAT
1 ATAAGTTAAATTAATTAT-T
103232 ATAAGGTTAAATTAATTATT
1 ATAA-GTTAAATTAATTATT
103252 AT-AGTTAA
1 ATAAGTTAA
103260 TAATTAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
17 3 0.08
18 17 0.45
19 4 0.11
20 11 0.29
21 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (19 bp):
ATAAGTTAAATTAATTATT
Found at i:103331 original size:14 final size:15
Alignment explanation
Indices: 103312--103340 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
103302 TATATATTAA
103312 TTTTTATTAT-ATAT
1 TTTTTATTATGATAT
103326 TTTTTATTATGATAT
1 TTTTTATTATGATAT
103341 ATAGTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTATTATGATAT
Found at i:103384 original size:15 final size:15
Alignment explanation
Indices: 103347--103378 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
103337 ATATATAGTT
*
103347 ATTAATTATTAATAA
1 ATTAATAATTAATAA
103362 ATTAATAATTAATAA
1 ATTAATAATTAATAA
103377 AT
1 AT
103379 AGATAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTAATAATTAATAA
Found at i:103502 original size:12 final size:12
Alignment explanation
Indices: 103485--103550 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
103475 AATCATTTTT
103485 ATTAATTAATAA
1 ATTAATTAATAA
103497 ATTAATTAAT--
1 ATTAATTAATAA
103507 ATTAA-TAATAA
1 ATTAATTAATAA
* *
103518 GTAAATTAATAA
1 ATTAATTAATAA
* * *
103530 CTAAATTGATAA
1 ATTAATTAATAA
103542 TATTAATTA
1 -ATTAATTA
103551 TTACAAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
9 4 0.09
10 5 0.12
11 3 0.07
12 26 0.60
13 5 0.12
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (12 bp):
ATTAATTAATAA
Found at i:104241 original size:16 final size:16
Alignment explanation
Indices: 104220--104253 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
104210 TTTAAAACAA
104220 AATTTTAAATAATTTT
1 AATTTTAAATAATTTT
*
104236 AATTTTAACTAATTTT
1 AATTTTAAATAATTTT
104252 AA
1 AA
104254 ATTATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTTAAATAATTTT
Found at i:104536 original size:15 final size:13
Alignment explanation
Indices: 104503--104541 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
104493 AACTACATAA
104503 TATAATTATAAAT
1 TATAATTATAAAT
104516 TATAATTATGATAAT
1 TATAATTAT-A-AAT
*
104531 TGTAATTATAA
1 TATAATTATAA
104542 GTTTTTGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 10 0.43
14 2 0.09
15 11 0.48
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (13 bp):
TATAATTATAAAT
Found at i:104667 original size:18 final size:19
Alignment explanation
Indices: 104644--104690 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
104634 TAATAATTTA
* *
104644 ATAATATTATTATAG-TAT
1 ATAATATAAATATAGTTAT
104662 ATAATATAAATATAGTTAT
1 ATAATATAAATATAGTTAT
*
104681 ATAAGATAAA
1 ATAATATAAA
104691 CAATAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (19 bp):
ATAATATAAATATAGTTAT
Found at i:104722 original size:22 final size:22
Alignment explanation
Indices: 104692--104755 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
104682 TAAGATAAAC
*
104692 AATAATTATTATTAATATTATA
1 AATAATTATTAATAATATTATA
* *
104714 AATATTTATTAATACTATTAATTA
1 AATAATTATTAATAATATT-A-TA
* *
104738 AATAAATA-AAATAATATT
1 AATAATTATTAATAATATT
104756 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
22 16 0.48
23 9 0.27
24 8 0.24
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AATAATTATTAATAATATTATA
Found at i:104943 original size:14 final size:14
Alignment explanation
Indices: 104926--104967 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
104916 AATGCAATTA
104926 TAATAATTTAAGAT
1 TAATAATTTAAGAT
*
104940 TAATTA-TTAA-AT
1 TAATAATTTAAGAT
104952 TAATAAGTTTAAGAT
1 TAATAA-TTTAAGAT
104967 T
1 T
104968 TAAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 9 0.39
15 3 0.13
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TAATAATTTAAGAT
Found at i:105605 original size:30 final size:30
Alignment explanation
Indices: 105563--105643 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 30
105553 TTAAGTTATA
105563 TATAATTATTAAATTAATTAAACTA-TTG-TT
1 TATAA-TATTAAATTAATTAAAC-AGTTGTTT
*
105593 TATTAATATTAAAGTAA-TAAACAGTTGTTT
1 TA-TAATATTAAATTAATTAAACAGTTGTTT
105623 TATAATATATAAATTATATTA
1 TATAATAT-TAAATTA-ATTA
105644 TATATAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
28 1 0.02
29 14 0.33
30 22 0.51
31 4 0.09
32 2 0.05
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (30 bp):
TATAATATTAAATTAATTAAACAGTTGTTT
Found at i:105665 original size:11 final size:12
Alignment explanation
Indices: 105625--105669 Score: 56
Period size: 11 Copynumber: 3.6 Consensus size: 12
105615 AGTTGTTTTA
105625 TAATATATAAAT
1 TAATATATAAAT
105637 TATATTATATATAAT
1 TA-A-TATATA-AAT
105652 TAATA-ATAAAT
1 TAATATATAAAT
105663 TAATATA
1 TAATATA
105670 ATTAAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 8 0.28
12 6 0.21
13 3 0.10
14 7 0.24
15 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATATATAAAT
Found at i:105736 original size:16 final size:16
Alignment explanation
Indices: 105622--105737 Score: 52
Period size: 16 Copynumber: 7.4 Consensus size: 16
105612 AACAGTTGTT
105622 TTATAATATATAAATTATA
1 TTATAAT-TAT-AATTA-A
105641 TTAT-A-TATAATTAA
1 TTATAATTATAATTAA
* *
105655 TAATAAAT-TAATATAA
1 TTATAATTATAAT-TAA
* *
105671 TTAAATATTATAACTAA
1 TTATA-ATTATAATTAA
105688 -TAT--TTATAA-T-A
1 TTATAATTATAATTAA
* * *
105699 TTA-ACTTACAAATAA
1 TTATAATTATAATTAA
105714 GTTATAATTATAATTAA
1 -TTATAATTATAATTAA
105731 TTATAAT
1 TTATAAT
105738 ATTATATTTA
Statistics
Matches: 75, Mismatches: 10, Indels: 27
0.67 0.09 0.24
Matches are distributed among these distances:
11 1 0.01
12 3 0.04
13 11 0.15
14 5 0.07
15 11 0.15
16 22 0.29
17 14 0.19
18 4 0.05
19 4 0.05
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.45
Consensus pattern (16 bp):
TTATAATTATAATTAA
Found at i:105813 original size:25 final size:23
Alignment explanation
Indices: 105769--105814 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
105759 AATTTTATCA
105769 ATTGTTTTAATAGTTATATTAAT
1 ATTGTTTTAATAGTTATATTAAT
105792 ATTGTTATATAATA-TTATTATTA
1 ATTGTT-T-TAATAGTTA-TATTA
105815 TAACTATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 4 0.20
25 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (23 bp):
ATTGTTTTAATAGTTATATTAAT
Found at i:106130 original size:15 final size:15
Alignment explanation
Indices: 106096--106148 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
106086 ACTATATTTA
106096 TATATTA-AAATTACT
1 TATATTATAAATTA-T
*
106111 AATATTATAAATTAT
1 TATATTATAAATTAT
*
106126 TATATTATAATAATAT
1 TATATTATAA-ATTAT
106142 TA-ATTAT
1 TATATTAT
106149 TAGCAATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 21 0.64
16 12 0.36
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TATATTATAAATTAT
Found at i:106136 original size:23 final size:24
Alignment explanation
Indices: 106105--106150 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
106095 ATATATTAAA
*
106105 ATTACTAATATTATAAATTATTAT
1 ATTACTAATAATATAAATTATTAT
*
106129 ATTA-TAATAATATTAATTATTA
1 ATTACTAATAATATAAATTATTA
106151 GCAATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTACTAATAATATAAATTATTAT
Found at i:106284 original size:13 final size:14
Alignment explanation
Indices: 106251--106298 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
106241 TATTAAATTG
106251 TTAATAATAAATAA
1 TTAATAATAAATAA
106265 TCATAATAATAAA-AA
1 T--TAATAATAAATAA
*
106280 TTAATTAGTAAATAA
1 TTAA-TAATAAATAA
106295 TTAA
1 TTAA
106299 ATGTTATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 3 0.10
14 7 0.24
15 9 0.31
16 10 0.34
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
TTAATAATAAATAA
Found at i:107249 original size:23 final size:23
Alignment explanation
Indices: 107200--107250 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
107190 ATTTATTTGT
* * *
107200 ATTAATTATAATTAATTATTAAT
1 ATTAATTATAATTAAATATGAAA
107223 ATTAATTATAATTATAATA-GAAA
1 ATTAATTATAATTA-AATATGAAA
107246 ATTAA
1 ATTAA
107251 AATATGTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAATTATAATTAAATATGAAA
Found at i:107288 original size:9 final size:10
Alignment explanation
Indices: 107274--107324 Score: 54
Period size: 9 Copynumber: 5.1 Consensus size: 10
107264 TTAATTAGAT
107274 TATTAAAT-A
1 TATTAAATAA
107283 TATT-AATAA
1 TATTAAATAA
107292 TATTAATATAA
1 TATTAA-ATAA
107303 TATTATTAATAA
1 TATTA--AATAA
107315 TATT-AATAA
1 TATTAAATAA
107324 T
1 T
107325 TTATTCAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
8 3 0.08
9 15 0.41
10 1 0.03
11 9 0.24
12 8 0.22
13 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTAAATAA
Found at i:107329 original size:23 final size:23
Alignment explanation
Indices: 107279--107322 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
107269 TAGATTATTA
107279 AATA-TATTAATAATATTAATAT
1 AATATTATTAATAATATTAATAT
107301 AATATTATTAATAATATTAATA
1 AATATTATTAATAATATTAATA
107323 ATTTATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATATTATTAATAATATTAATAT
Found at i:107667 original size:182 final size:180
Alignment explanation
Indices: 107360--108356 Score: 561
Period size: 182 Copynumber: 5.5 Consensus size: 180
107350 GTTAATTATC
* * *
107360 TAAACTTCTATTAACTGAAACAATTGTTTTATGA-TAAATCAAAAGGTTATAACAATTTTAAATA
1 TAAACTTGTATCAACTGAAACAATTGTTTTATGACTAAA-CAAAAGGTTATAACAATTTCAAATA
* * ** * * * *
107424 GACAATTGTTCAAATAGTGATAACTGTTTGAACTTGTTCGATAAATAGATTTATTTTTTAAAATC
65 AATAATTGTTC-AATAGTCTTAATTATTTGAA-TTGTTCGATAAACAAATTTATTTTTTAAAATC
* * * **
107489 TCTTT-CTTATTAATTTTTCAAATGTTAATAAATTAGTATTAATT-TATTTTAAA
128 T-TTTGCTTATTAAATTTTCAAATATTAATAAATTAGTATT-ATTCTAATCAAAA
* * * *
107542 TAAACTTGTATGAACTGAAACAATTATTTTATGACTAAACAAAATGTTAGAACAATTTCAAATAA
1 TAAACTTGTATCAACTGAAACAATTGTTTTATGACTAAACAAAAGGTTATAACAATTTCAAATAA
107607 ATAATTGTTCTAATAGTCTTAATTATTTGAATTGAATTCGATAAACAAATTT-TTTTTTAAAATC
66 ATAATTGTTC-AATAGTCTTAATTATTTGAATTG--TTCGATAAACAAATTTATTTTTTAAAATC
* * *
107671 TTTTGCTTCTTAAATTTTGAAATATTATTAAATTAGTATTATTCTAATCAAAA
128 TTTTGCTTATTAAATTTTCAAATATTAATAAATTAGTATTATTCTAATCAAAA
* * * * * * ** *
107724 TAAGCTTGTA-CATAC-AAAACAATTGTTTTACGACAAAAGAAAAGGTCATAATGATTTGAAATA
1 TAAACTTGTATCA-ACTGAAACAATTGTTTTATGACTAAACAAAAGGTTATAACAATTTCAAATA
* * ** * *
107787 AATAATTGTTCATATAGCCTTAATTATTTGAATTGGTTCAGCT-ATTAGATTTATTTTTT-AATT
65 AATAATTGTTCA-ATAGTCTTAATTATTTGAATT-GTTC-GATAAACAAATTTATTTTTTAAAAT
* * * * * * ** *
107850 TTTTTGGTTATT-TAGTTTCAAAATATTATTAAATTAATATTATT-TTTTCCAAA
127 CTTTTGCTTATTAAATTTTC-AAATATTAATAAATTAGTATTATTCTAATCAAAA
* * * * * * * * *
107903 TAAAATAGTATGAAC-AAAACCAATTGTTTGATGACAAAATAAAAGGTCATAACAATTTGAAATA
1 TAAACTTGTATCAACTGAAA-CAATTGTTTTATGACTAAACAAAAGGTTATAACAATTTCAAATA
* * ** ** * * * * *
107967 GATAATTATTCAAATAGTCAAAACAATTTGAAATGGTTTGGTAAACATATTTAACTTTTT-AAAT
65 AATAATTGTTC-AATAGTCTTAATTATTTG-AATTGTTCGATAAACAAATTT-ATTTTTTAAAAT
* * * * * *
108031 CTCTT-ATTGATT-AATTTTCTAAATATTAATAAATTAATATTATTTTATTTC-GAA
127 CTTTTGCTT-ATTAAATTTTC-AAATATTAATAAATTAGTATTATTCTA-ATCAAAA
* * * * * * * * ** *
108085 CAAACTTATATTAA-TAAAAGCAATTGTTTTACGACAAAACAAAAAGTAATAATGATTTAAAATA
1 TAAACTTGTATCAACTGAAA-CAATTGTTTTATGACTAAACAAAAGGTTATAACAATTTCAAATA
* * * * * * * * * *
108149 GATAATTGCTCAAATTGT-TATAATAACTTGAACTGGTTTGGTAAATAGAA-TTATTTTCT-AAA
65 AATAATTGTTC-AATAGTCT-TAATTATTTGAA-TTGTTCGATAAACA-AATTTATTTTTTAAAA
* * * * *
108211 TC---T-CTTA-TAAATTTTTTAAATATTAATAAATTAGTTTTATTATATTTC-GAA
126 TCTTTTGCTTATTAAA-TTTTCAAATATTAATAAATTAGTATTATTCTA-ATCAAAA
* * * * * * * * *
108262 TACACTTGTATGACCTGAAATAATTATTTTATGACAAAACAAAA-GTCATAACAAATTGAAATAA
1 TAAACTTGTATCAACTGAAACAATTGTTTTATGACTAAACAAAAGGTTATAACAATTTCAAATAA
* * *
108326 ATAATTGTTCATTTAGTATTAACTATTTGAA
66 ATAATTGTTCA-ATAGTCTTAATTATTTGAA
108357 CAAAAAGTCA
Statistics
Matches: 650, Mismatches: 136, Indels: 64
0.76 0.16 0.08
Matches are distributed among these distances:
175 1 0.00
176 36 0.06
177 65 0.10
178 11 0.02
179 25 0.04
180 117 0.18
181 145 0.22
182 228 0.35
183 22 0.03
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (180 bp):
TAAACTTGTATCAACTGAAACAATTGTTTTATGACTAAACAAAAGGTTATAACAATTTCAAATAA
ATAATTGTTCAATAGTCTTAATTATTTGAATTGTTCGATAAACAAATTTATTTTTTAAAATCTTT
TGCTTATTAAATTTTCAAATATTAATAAATTAGTATTATTCTAATCAAAA
Found at i:109229 original size:179 final size:175
Alignment explanation
Indices: 108393--109449 Score: 512
Period size: 177 Copynumber: 5.9 Consensus size: 175
108383 ATAAATGTTA
* * * ** * * * * *
108393 ATAAATTAATATTATTTTATTTTAAATAAGTTTTTATGAACTGAAACAACTATTTTAT-AGCTAA
1 ATAAATTAGTATTATTTTATTCTAAATAAGCTTGAATAAACAGAAACAATTATTCTATGA-CAAA
* * * * *
108457 ACAAAAGGTCGA-AACAATTT-AA-AATTGATAATTATTCTAATAGTCTTAACTATTTGAACTAG
65 ATAAAAGATC-ATAACAATTTGAAGAA--GATAATTATTCAAATAGTCATAACTATTTGAA-TTG
* * *
108519 TTTGACAAACACATTTATTTTTTAAATCTCTTGTTAATTTTTGAA-ATATT-
126 TTCGA-AAACACATTTATTTTTTAAATCTCTTATTAA-TTTTCAAGATATTG
* * * * * ** * *
108569 ATTAAATTAATATTATTTT-TATCCAAACAAGCTTGGATGATTAGAAACAATTGTT-TATTGAGA
1 A-TAAATTAGTATTATTTTAT-TCTAAATAAGCTTGAATAAACAGAAACAATTATTCTA-TGACA
* * ** * * * * *
108632 AAA-GAATGATCATAATGATTTG-AGATTGATATTTGTTTAAATAGTCATAACTATTTGAACTAG
63 AAATAAAAGATCATAACAATTTGAAGA-AGATAATTATTCAAATAGTCATAACTATTTGAA-TTG
* * ** * * * *
108695 TTTGGAAAATAGTTTTAGTTTTTAAATCTCTTGCTTACTAATTTTTTAA-ATATTA
126 -TTCGAAAACACATTTATTTTTTAAA--TC-T-CTTATTAA-TTTTCAAGATATTG
* * * * ** * *
108750 ATAAAGTAGTATTATTTTATTTTGAATAAATCTT-TTTGAACTGAAACAATTACTT-TATGACAA
1 ATAAATTAGTATTATTTTATTCTAAAT-AAGCTTGAATAAACAGAAACAATTA-TTCTATGACAA
* * * * * **
108813 AATAAAACG-TTATAACAACTTTAAATAGTTAGAATGATTATTCATATAGTCA-AATCTCCTTGA
64 AATAAAA-GATCATAACAA-TTT-GA-AG-AAG-ATAATTATTCAAATAGTCATAA-CTATTTGA
* * * ** * *
108876 ACTTGTTCAGTAAATA-AATT-TTTTAAAAATCTCTTGCTCATTAATTTTTCAA-ATGTTA
122 A-TTGTTC-GAAAACACATTTATTTTTTAAATCTC-T--T-ATTAA-TTTTCAAGATATTG
* * * ** * * * *
108934 ATAAATTAGTATTATTTTATTCTAGAT-AGACTTGTATTAATTGAAATAATTGTTTTATGACTAA
1 ATAAATTAGTATTATTTTATTCTAAATAAG-CTTGAATAAACAGAAACAATTATTCTATGACAAA
* * * *
108998 ATAAAATG-TTAGAACAATTTGAA-ATAGATAATTATTCTAATAGTCTTAACTATTTGAATTGCT
65 ATAAAA-GATCATAACAATTTGAAGA-AGATAATTATTCAAATAGTCATAACTATTTGAATTG-T
* ***
109061 TCGACAAACACATTTATTTTTTAAATCTCTTACTTATTTTTTTTGGAATATT-
127 TCGA-AAACACATTTATTTTTTAAATCTCTTA-TTA-ATTTTCAAG-ATATTG
* * *
109113 ATTAAATTAGTATTGTTTTAATTC-AAATAAGCTTGAATGAAA-A-AAACTAGTTGTTCTATGAC
1 A-TAAATTAGTATTATTTT-ATTCTAAATAAGCTTGAAT-AAACAGAAAC-AATTATTCTATGAC
* * *
109175 AAAAT-AAAGATCATAACGATTT-AAGATGGATAATTATTCAAATAGTCATAACTATTTAAATTG
62 AAAATAAAAGATCATAACAATTTGAAGA-AGATAATTATTCAAATAGTCATAACTATTTGAATTG
* * *
109238 TTTCAGAAAATAGATTTAGTTTTTAAATCTCTTATTAATTTTCAAGATATTG
126 -TTC-GAAAACACATTTATTTTTTAAATCTCTTATTAATTTTCAAGATATTG
* ** * * *
109290 ATAAATTAGTATTATTTTATTCTGAATAATTTTGCATAAACAGTAACAATTATTTTATGACAAAA
1 ATAAATTAGTATTATTTTATTCTAAATAAGCTTGAATAAACAGAAACAATTATTCTATGACAAAA
* * * * *
109355 TAAAAGGTCATAACAATTTGAAGAAGATAATTGTTCAAATGGACATGACTATTTGAACTTGTTCG
66 TAAAAGATCATAACAATTTGAAGAAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGTTCG
* * *
109420 ATAAACATATTTGTTTTTTAAATCCCTTAT
130 A-AAACACATTTATTTTTTAAATCTCTTAT
109450 CTATTAATTT
Statistics
Matches: 672, Mismatches: 149, Indels: 119
0.71 0.16 0.13
Matches are distributed among these distances:
175 8 0.01
176 113 0.17
177 127 0.19
178 28 0.04
179 107 0.16
180 111 0.17
181 41 0.06
182 8 0.01
183 9 0.01
184 81 0.12
185 9 0.01
186 30 0.04
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (175 bp):
ATAAATTAGTATTATTTTATTCTAAATAAGCTTGAATAAACAGAAACAATTATTCTATGACAAAA
TAAAAGATCATAACAATTTGAAGAAGATAATTATTCAAATAGTCATAACTATTTGAATTGTTCGA
AAACACATTTATTTTTTAAATCTCTTATTAATTTTCAAGATATTG
Found at i:109440 original size:177 final size:173
Alignment explanation
Indices: 108459--109449 Score: 514
Period size: 179 Copynumber: 5.5 Consensus size: 173
108449 ATAGCTAAAC
* * * * *
108459 AAAAGGTCGA-AACAATTT-AAAATTGATAATTATTCTAATAGTCTTAACTATTTGAACTAG-TT
1 AAAAGGTC-ATAACAATTTGAAGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGCTT
* * * * *
108521 TGACAAACACATTTATTTTTTAAATCTCTTGTTAATTTTTGAA-ATATTATTAAATTAATATTAT
64 CGA-AAACACATTTGTTTTTTAAATCTCTTATTAA-TTTTCAAGATATTA-TAAATTAGTATTA-
* * * * ** *
108585 TTTTATCCAAACAAGCTTGGATGATTAGAAACAATTG-TTTATTGAGAAAA-
125 TTTTATTCTAATAA-CTTGAAT-AAAAGAAACAATTGTTTTA-TGACAAAAT
* * * ** * * * * * * *
108635 GAATGATCATAATGATTTG-AGATTGATATTTGTTTAAATAGTCATAACTATTTGAACTAGTTTG
1 AAAAGGTCATAACAATTTGAAGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGCTTC
* ** * * *
108699 GAAAATAGTTTTAG-TTTTTAAATCTCTTGCTTACTAATTTTTTAA-ATATTAATAAAGTAGTAT
65 GAAAACACATTT-GTTTTTTAAA--TC-T-CTTATTAA-TTTTCAAGATATT-ATAAATTAGTAT
* ** ** **
108762 TATTTTATTTTGAATAAATCTT-TTTGAACTGAAACAATTACTTTATGACAAAAT
123 TATTTTATTCT-AAT-AA-CTTGAAT-AAAAGAAACAATTGTTTTATGACAAAAT
* * * * * * **
108816 AAAACGTTATAACAACTTTAAATAGTTAGAATGATTATTCATATAGTCA-AATCTCCTTGAACTT
1 AAAAGGTCATAACAA-TTT-GA-AGATAG-ATAATTATTCAAATAGTCATAA-CTATTTGAA-TT
* * * ** *
108880 G-TTCAGTAAATA-AATT-TTTTAAAAATCTCTTGCTCATTAATTTTTCAA-ATGTTAATAAATT
60 GCTTC-GAAAACACATTTGTTTTTTAAATCTC-T--T-ATTAA-TTTTCAAGATATT-ATAAATT
* ** * *
108941 AGTATTATTTTATTCTAGATAGACTTGTATTAATTGAAATAATTGTTTTATGACTAAAT
118 AGTATTATTTTATTCTA-ATA-ACTTG-AATAAAAGAAACAATTGTTTTATGACAAAAT
* * * * *
109000 AAAATGTTAGAACAATTTGAA-ATAGATAATTATTCTAATAGTCTTAACTATTTGAATTGCTTCG
1 AAAAGGTCATAACAATTTGAAGATAGATAATTATTCAAATAGTCATAACTATTTGAATTGCTTCG
* * *** *
109064 ACAAACACATTTATTTTTTAAATCTCTTACTTATTTTTTTTGGAATATTATTAAATTAGTATTGT
66 A-AAACACATTTGTTTTTTAAATCTCTTA-TTA-ATTTTCAAG-ATATTA-TAAATTAGTATTAT
* * *
109129 TTTAATTCAAATAAGCTTGAATGAAAA-AAACTAGTTGTTCTATGACAAAAT
126 TTT-ATTCTAATAA-CTTGAAT-AAAAGAAAC-AATTGTTTTATGACAAAAT
* * * * *
109180 -AAAGATCATAACGATTT-AAGATGGATAATTATTCAAATAGTCATAACTATTTAAATTGTTTCA
1 AAAAGGTCATAACAATTTGAAGATAGATAATTATTCAAATAGTCATAACTATTTGAATTGCTTC-
* *
109243 GAAAATAGATTTAG-TTTTTAAATCTCTTATTAATTTTCAAGATATTGATAAATTAGTATTATTT
65 GAAAACACATTT-GTTTTTTAAATCTCTTATTAATTTTCAAGATATT-ATAAATTAGTATTATTT
* * * *
109307 TATTCTGAATAATTTTGCATAAACAGTAACAATTATTTTATGACAAAAT
128 TATTCT-AATAA-CTTGAATAAA-AGAAACAATTGTTTTATGACAAAAT
* * * *
109356 AAAAGGTCATAACAATTTGAAGA-AGATAATTGTTCAAATGGACATGACTATTTGAACTTG-TTC
1 AAAAGGTCATAACAATTTGAAGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGCTTC
* *
109419 GATAAACATATTTGTTTTTTAAATCCCTTAT
65 GA-AAACACATTTGTTTTTTAAATCTCTTAT
109450 CTATTAATTT
Statistics
Matches: 626, Mismatches: 134, Indels: 109
0.72 0.15 0.13
Matches are distributed among these distances:
175 8 0.01
176 112 0.18
177 82 0.13
178 26 0.04
179 115 0.18
180 107 0.17
181 37 0.06
182 6 0.01
183 9 0.01
184 82 0.13
185 12 0.02
186 30 0.05
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (173 bp):
AAAAGGTCATAACAATTTGAAGATAGATAATTATTCAAATAGTCATAACTATTTGAATTGCTTCG
AAAACACATTTGTTTTTTAAATCTCTTATTAATTTTCAAGATATTATAAATTAGTATTATTTTAT
TCTAATAACTTGAATAAAAGAAACAATTGTTTTATGACAAAAT
Found at i:110760 original size:538 final size:537
Alignment explanation
Indices: 109773--111185 Score: 1152
Period size: 538 Copynumber: 2.6 Consensus size: 537
109763 AATAGATTTA
* * * * *
109773 TTTTTAAAATTTTACTTGTAAATTTTTTGAAAATTAATAAATTTATATTATTTTATTTGGAATAA
1 TTTTTAAAATTTTACTTATAAATTGTCTGAAAATTAATAAATTTATATTATTTTAATTGAAATAA
* * *
109838 GCTTGTATGAACAGAAACAATTATTTTACAACAAACAAAATGTCATAATGATTTGAACTAGAAAA
66 GCTTGTATGAACAGAAAAAATTATTTTACAACAAACAAAAGGTCATAACGATTTGAACTAGAAAA
* * * *
109903 TTGTTCAAATAGTCAAACTATTTGAATTTGTTCGATAAATAAATTTATTTTTTAAATCTCTTACT
131 TTGTTCAAATAGTCAAACTATTTGAACTTATTCGATAAATAAATTCAATTTTTAAATCTCTTA-T
* ** * * ** *
109968 CATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCCTATATGAACTGAT
195 CATTAATTTTTGGAATATTAACAAATTAAAATTATATTATTCCAAATAAGCCTATATGAACAAAA
** * * * * * *
110033 ACAATTGTTTTATAATGAAACAAAAGGTCATATCGATTTGAAATAGATAATTATTCAAATAGTTA
260 ACAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTAAAATAAATAATTATTCAAACAGTCA
* * * * * *** **
110098 TGACTGTCTGAACTTATTCAGTAAACATATTTATTTTTAAAATTTTTTACTTATTAATTGTTAAA
325 TAACTATCTGAACTTAGTCAGCAAACATATTCATTTTTAAAATCCATTACACATTAATTGTTAAA
* * * * * *
110163 ATATTAATAAATTAATATTAGTTTAAATCGAATAAGCTTGTATGAATGAAAATAATTGTTTTATG
390 ATATTAATAAAATAACATTAGTTTAAATCAAATAAGCTTATATCAATGAAAACAATTGTTTTATG
110228 ACAAAAAAAAGTCATAACAATTTGAAATAAACAACTATTCAAATAGTCATAACGATTATAACTTA
455 ACAAAAAAAAGTCATAACAATTTGAAATAAACAACTATTCAAATAGTCATAACGATTATAACTTA
110293 TTTGGTAATCAAAGTTAT
520 TTTGGTAATCAAAGTTAT
* * * *
110311 TTTTTAAATCTTTTACTTATTAATTGTCTGAATATTAATAAAATTTTTATTATTTTAATTGAAAT
1 TTTTTAAA-ATTTTACTTATAAATTGTCTGAAAATTAAT-AAATTTATATTATTTTAATTGAAAT
* * * *
110376 AAGCTTGTATGAATAGAAAAAATTATTTTATGCCA-AAACAAAAGGTTATAGCGATTTGATA-TA
64 AAGCTTGTATGAACAGAAAAAATTATTTTA--CAACAAACAAAAGGTCATAACGATTTGA-ACTA
** * *
110439 GGTAATTGTTGAAATAGTCATAACTATTTGAACTTATTCGATAAATAGATTCAATTTTTAAATCT
126 GAAAATTGTTCAAATAGTCA-AACTATTTGAACTTATTCGATAAATAAATTCAATTTTTAAATCT
* * * * *
110504 C-T-T-ATTAATTTTTGGAATATTACCAAATTAAAATTATATTATTCCCAGTAAGCTTGTATGAA
190 CTTATCATTAATTTTTGGAATATTAACAAATTAAAATTATATTATTCCAAATAAGCCTATATGAA
* * * * * *
110566 CAAAAATAATTTTTTTGTGACAAAATAAAAGGTTATAACAATTTAAAATAAATAATTATTCAAAC
255 CAAAAACAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTAAAATAAATAATTATTCAAAC
* * * * *
110631 AGTCATAACTATTTGCAC-TGGTCAGGCCAACCA-ATTCATTTTTTAAATCCATTACACATTAAT
320 AGTCATAACTATCTGAACTTAGTCA-G-CAAACATATTCATTTTTAAAATCCATTACACATTAAT
* * * * *
110694 TTTTAGAATATTAATAAAATAGCATTA-TTTTATTCTAAATAAGAC-TATATCAAT-AGAAACAA
383 TGTTAAAATATTAATAAAATAACATTAGTTTAAATC-AAATAAG-CTTATATCAATGA-AAACAA
** ** * * * * ** *
110756 TTGTTTTATGACAAAACATATGGTCATAATGATTTGAAATCAATAATTGTTCAAATTTTTATAAC
445 TTGTTTTATGACAAAA-A-AAAGTCATAACAATTTGAAATAAACAACTATTCAAATAGTCATAAC
* * * *
110821 TAATTA-AAC--AGTTTGGTAAACAGATTTA-
508 -GATTATAACTTA-TTTGGTAATCAAAGTTAT
* * ** * * * * *
110849 TTTTTCAAA-TCT-CTTATTGATTTTC-AAAATATTAATCAATTAATATTATTAT-A-TGCTAAA
1 TTTTTAAAATTTTACTTATAAATTGTCTGAAA-ATTAATAAATTTATATTATTTTAATTG--AAA
* * * * * * * * *
110909 CAAACTTATATGAACA-AAACATTTGTTTTACGACAAAACAAAAGGTCATAATGGATTTGAAATA
63 TAAGCTTGTATGAACAGAAAAAATTATTTTACAAC-AAACAAAAGGTCATAA-CGATTTGAACTA
* * * * * * * *
110973 -AATAATTATTCATATATTCCAAACTATTTAAAAC-TAGATCGATAAATAGATTTAGTTTTTAAA
126 GAA-AATTGTTCAAATAGT-CAAACTATTT-GAACTTA-TTCGATAAATAAATTCAATTTTTAAA
* * ** * ** *** *
111036 TAC-C-T-T-ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTA
187 T-CTCTTATCATTAATTTTTGGAATATTAACAAATTAAAATTATATTATTCCAAATAAGCCTATA
* * * * *
111097 TGAACAAAAACAATTATTTTATGACAAAACAAAATGTCATAACAATTTGAAATAGATAA-TAGTT
251 TGAACAAAAACAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTAAAATAAATAATTA-TT
** * *
111161 CAAATGGACATAACTATTTGAACTT
315 CAAACAGTCATAACTATCTGAACTT
111186 GTTTTGTAAA
Statistics
Matches: 699, Mismatches: 147, Indels: 60
0.77 0.16 0.07
Matches are distributed among these distances:
531 2 0.00
532 2 0.00
533 27 0.04
534 61 0.09
535 165 0.24
536 4 0.01
537 11 0.02
538 207 0.30
539 45 0.06
540 88 0.13
541 44 0.06
542 43 0.06
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (537 bp):
TTTTTAAAATTTTACTTATAAATTGTCTGAAAATTAATAAATTTATATTATTTTAATTGAAATAA
GCTTGTATGAACAGAAAAAATTATTTTACAACAAACAAAAGGTCATAACGATTTGAACTAGAAAA
TTGTTCAAATAGTCAAACTATTTGAACTTATTCGATAAATAAATTCAATTTTTAAATCTCTTATC
ATTAATTTTTGGAATATTAACAAATTAAAATTATATTATTCCAAATAAGCCTATATGAACAAAAA
CAATTGTTTTATAACAAAACAAAAGGTCATAACAATTTAAAATAAATAATTATTCAAACAGTCAT
AACTATCTGAACTTAGTCAGCAAACATATTCATTTTTAAAATCCATTACACATTAATTGTTAAAA
TATTAATAAAATAACATTAGTTTAAATCAAATAAGCTTATATCAATGAAAACAATTGTTTTATGA
CAAAAAAAAGTCATAACAATTTGAAATAAACAACTATTCAAATAGTCATAACGATTATAACTTAT
TTGGTAATCAAAGTTAT
Found at i:110958 original size:175 final size:177
Alignment explanation
Indices: 110688--111165 Score: 466
Period size: 178 Copynumber: 2.7 Consensus size: 177
110678 TCCATTACAC
* * * ** * * * * * *
110688 ATTAATTTTTAGAATATTAATAAAATAGCATTATTTTATTCTAAATAAGAC-TATATCAATAGAA
1 ATTAATTTTCAAAATATTAATAAATTAATATTATTATATGCTAAACAA-ACTTATATGAACAAAA
* * **
110752 ACAATTGTTTTATGACAAAACATATGGTCATAATGATTTGAAATCAATAATTGTTCAAAT-TTTT
65 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAAT-AATAATTGTTCAAATATTCC
* * *
110816 ATAACTAATT-AAAC-AGTTTGGTAAACAGATTTA-TTTTTCAAAT-CTCTT
129 A-AACTAATTAAAACTAGATCGATAAACAGATTTAGTTTTT-AAATAC-CTT
* *
110864 ATTGATTTTCAAAATATTAATCAATTAATATTATTATATGCTAAACAAACTTATATGAAC-AAAA
1 ATTAATTTTCAAAATATTAATAAATTAATATTATTATATGCTAAACAAACTTATATGAACAAAAA
* * * *
110928 CATTTGTTTTACGACAAAACAAAAGGTCATAATGGATTTGAAATAAATAATTATTCATATATTCC
66 CAATTGTTTTATGACAAAACAAAAGGTCATAAT-GATTTGAAAT-AATAATTGTTCAAATATTCC
* *
110993 AAACTATTTAAAACTAGATCGATAAATAGATTTAGTTTTTAAATACCTT
129 AAACTAATTAAAACTAGATCGATAAACAGATTTAGTTTTTAAATACCTT
** * * * * * ** *
111042 ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGAACAAAAA
1 ATTAATTTTCAAAATATTAATAAATTAATATTATTATATGCTAAACAAACTTATATGAACAAAAA
* * ** *
111107 CAATTATTTTATGACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAAT
66 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-ATAATTGTTCAAAT
111166 GGACATAACT
Statistics
Matches: 245, Mismatches: 48, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
175 34 0.14
176 75 0.31
177 8 0.03
178 90 0.37
179 38 0.16
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (177 bp):
ATTAATTTTCAAAATATTAATAAATTAATATTATTATATGCTAAACAAACTTATATGAACAAAAA
CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAATAATTGTTCAAATATTCCAA
ACTAATTAAAACTAGATCGATAAACAGATTTAGTTTTTAAATACCTT
Found at i:111228 original size:163 final size:156
Alignment explanation
Indices: 111042--111498 Score: 460
Period size: 163 Copynumber: 2.9 Consensus size: 156
111032 TAAATACCTT
* *
111042 ATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGAACAAAAA
1 ATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAAAAA
111107 CAATTATTTTATGACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATGGACAT
65 CAATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAATA-TTCAAAT-GA-AT
111172 AACTATTTGAACTTGTTTTGTAAAT-TTTCAACTC
126 AACTATTTGAAC-T-TTTT-TAAATCTTT-AACTC
* * *
111206 ATTAATTTTAT-AATATTAATAAATTAGTATTATTTTATTTTAAATAAAATTT-TATGAATAGAA
1 ATTAATTTT-TGAATATTAATAAATTAGTATTATTTTATTCTAAAT-AAATTTGTATGAACAAAA
* * *
111269 ACAATTATTTTATGACCAAA-AAAAGATCATAACAATTTGAAATAAATAATTCTTC--A--AAT-
64 ACAATTATTTTATGACAAAACAAAAG-TCATAACAATTTGAAATAGATAA-TATTCAAATGAATA
* * *
111328 A-GATTT--A-TTTTTTAAATCTTTTACTT
127 ACTATTTGAACTTTTTTAAATCTTTAACTC
* *
111354 ATTAATTTTTGGAATA--AATAAATTAGTATTATTTTATTCCAAATAAGA-TTGTATGAACATAA
1 ATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCTAAATAA-ATTTGTATGAACAAAA
** ** *
111416 ACAATTGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTTA
64 ACAATTATTTTATGACAAAACAAAA-GTCATAACAATTTGAAATAGATAA-TATTCAAAT-G-AA
*
111481 TAACTATTTGAACATTTT
125 TAACTATTTGAACTTTTT
111499 CAGAAAACAA
Statistics
Matches: 246, Mismatches: 25, Indels: 49
0.77 0.08 0.15
Matches are distributed among these distances:
146 4 0.02
147 54 0.22
148 46 0.19
149 12 0.05
150 2 0.01
152 1 0.00
154 6 0.02
155 2 0.01
156 6 0.02
157 1 0.00
158 1 0.00
159 4 0.02
160 1 0.00
161 1 0.00
162 29 0.12
163 61 0.25
164 14 0.06
165 1 0.00
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.41
Consensus pattern (156 bp):
ATTAATTTTTGAATATTAATAAATTAGTATTATTTTATTCTAAATAAATTTGTATGAACAAAAAC
AATTATTTTATGACAAAACAAAAGTCATAACAATTTGAAATAGATAATATTCAAATGAATAACTA
TTTGAACTTTTTTAAATCTTTAACTC
Found at i:111825 original size:19 final size:19
Alignment explanation
Indices: 111803--111840 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
111793 AGAAATGGTC
111803 ATAATGATTTGAAATAGTT
1 ATAATGATTTGAAATAGTT
* *
111822 ATAATTATTTGAACTAGTT
1 ATAATGATTTGAAATAGTT
111841 TGGTAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (19 bp):
ATAATGATTTGAAATAGTT
Found at i:112424 original size:175 final size:176
Alignment explanation
Indices: 111937--112543 Score: 472
Period size: 175 Copynumber: 3.4 Consensus size: 176
111927 GAATGAGCTG
* * * * * *
111937 AAATAA-TATTTTTATGACAAAACAAAAGCTCATAACA-ATTTGAAATAAATCATTATTCATATA
1 AAATAATTA-TTTTATGACAAAACAAAAGGTAATAA-AGATTTGAAATAGATAATTGTTCAAATA
* * * ** * * ** *
112000 GTCTTAACTATTTCAACTTA-TTCGACAAACAGATTTATTTTTTAAATCTCTTAGTTATTAATT-
64 GCCATAATTATTAAAACTGATTTAG-CAAATTGATTTATTTTTTAAATATC----TTATTAATTC
* * * * *
112063 TTCAGAATTTTACT-AAATTAGTATTATTTTAATTT-GAATAAGCT-TGTATGAACTA
124 TT-AAAATATTAATGAAA-TAGTATTATTTT-ATTTCGAATAA-ATGTATATGAAC-A
* * * * *
112118 AAACAATTATTTTGTGATAGAACAAAAGTTAA-AACA-ATTTGAAATAGATAATTGTTCAAATAG
1 AAATAATTATTTTATGACAAAACAAAAGGTAATAA-AGATTTGAAATAGATAATTGTTCAAATAG
* ** * * * *** *
112181 TCAT-ATCTATTTGAACTGGTTCAGTAAAAAAATTTATTTTTTAAATCTCTTATTAATTCTTAAA
65 CCATAAT-TATTAAAACTGATTTAGCAAATTGATTTATTTTTTAAATATCTTATTAATTCTTAAA
*
112245 ATATTAAT-AAATTAGTTTTATTTTATTTCGAATAAACATGTATATTGAA-A
129 ATATTAATGAAA-TAGTATTATTTTATTTCGAAT-AA-ATGTATA-TGAACA
* * * * *
112295 AACA-AA-TGTTTTATGAC-AAACACAAGGTAATAATGATTTGAAATA-ATAGTTGTTCAAATGG
1 AA-ATAATTATTTTATGACAAAACAAAAGGTAATAAAGATTTGAAATAGATAATTGTTCAAATAG
* *
112356 CCATAATTATTAAAACTGATTTAGCAAATTGATTTATTTTTTAAATATCTTATTAATTTTTGAAA
65 CCATAATTATTAAAACTGATTTAGCAAATTGATTTATTTTTTAAATATCTTATTAATTCTTAAAA
* * *
112421 TATTAATGAAATAGTATTATTTTATTTTGGATAAATGTTTATGAACTA
130 TATTAATGAAATAGTATTATTTTATTTCGAATAAATGTATATGAAC-A
* * *
112469 AAATAATTATTTTATGACAAAACAAAAGGTCATAAAGATTTTAAATAGATAATTGTTCAAATAGT
1 AAATAATTATTTTATGACAAAACAAAAGGTAATAAAGATTTGAAATAGATAATTGTTCAAATAGC
112534 CATAATTATT
66 CATAATTATT
112544 TGAACTTGTT
Statistics
Matches: 347, Mismatches: 60, Indels: 42
0.77 0.13 0.09
Matches are distributed among these distances:
172 4 0.01
173 7 0.02
174 7 0.02
175 113 0.33
176 85 0.24
177 34 0.10
178 4 0.01
179 5 0.01
180 61 0.18
181 25 0.07
182 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (176 bp):
AAATAATTATTTTATGACAAAACAAAAGGTAATAAAGATTTGAAATAGATAATTGTTCAAATAGC
CATAATTATTAAAACTGATTTAGCAAATTGATTTATTTTTTAAATATCTTATTAATTCTTAAAAT
ATTAATGAAATAGTATTATTTTATTTCGAATAAATGTATATGAACA
Found at i:112919 original size:180 final size:180
Alignment explanation
Indices: 111814--113225 Score: 884
Period size: 181 Copynumber: 7.8 Consensus size: 180
111804 TAATGATTTG
* * ** * *
111814 AAATAGTTATAATTATTTGAACT-AGTTTGGTAAATAGAA-TTATTTTCTAAATCTCTTACTTAT
1 AAATAGTCATAACTATTTGAACTGA-TTCAGCAAATA-AATTTATTTTTTAAATCTCTT-CTTAT
* * * * * * * *
111877 AAATTTTTGAAATATTAATAAATTAGTTTTATTCTT-TCTT-GAATAACCTTGA-ATGAGCTGAA
63 TAATTTTTAAAATATTATTAAATTAGTATTATT-TTAT-TTCGAATAAGCTT-ATATAAACTAAA
* * * *
111939 ATAA-TATTTTTATGACAAAACAAAAGCTCATAACAATTTGAAATAAATCATTATTC
125 ACAATTA-TTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTC
* * * * * * *
111995 ATATAGTCTTAACTATTTCAACTTATTC-GACAAACAGATTTATTTTTTAAATCTCTTAGTTATT
1 AAATAGTCATAACTATTTGAACTGATTCAG-CAAATAAATTTATTTTTTAAATCTCTT-CTTATT
* * * * * *
112059 AATTTTCAGAATTTTACTAAATTAGTATTATTTTAATTT-GAATAAGCTTGTATGAACTAAAACA
64 AATTTTTAAAATATTATTAAATTAGTATTATTTT-ATTTCGAATAAGCTTATATAAACTAAAACA
* * * * * *
112123 ATTATTTTGTGATAGAACAAAA-GTTAAAACAATTTGAAATAGATAATTGTTC
128 ATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTC
* * * *
112175 AAATAGTCATATCTATTTGAACTGGTTCAGTAAAAAAATTTATTTTTTAAA--TC-TCTTATTAA
1 AAATAGTCATAACTATTTGAACTGATTCAGCAAATAAATTTATTTTTTAAATCTCTTCTTATTAA
* * * * **
112237 TTCTTAAAATATTAATAAATTAGTTTTATTTTATTTCGAATAAACATGTATATTGA--AAAACAA
66 TTTTTAAAATATTATTAAATTAGTATTATTTTATTTCGAATAAGC-T-TATATAAACTAAAACAA
* * * * ** * *
112300 ATGTTTTATGAC-AAACACAAGGTAATAATGATTTGAAATA-ATAGTTGTTC
129 TTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTC
* * * ** * ** *
112350 AAATGGCCATAATTATTAAAACTGATTTAGCAAATTGATTTATTTTTTAAA--T-ATCTTATTAA
1 AAATAGTCATAACTATTTGAACTGATTCAGCAAATAAATTTATTTTTTAAATCTCTTCTTATTAA
* * * * * *
112412 TTTTTGAAATATTAATGAAA-TAGTATTATTTTATTTTGGATAAATG-TT-TATGAACTAAAATA
66 TTTTTAAAATATT-ATTAAATTAGTATTATTTTATTTCGAAT-AA-GCTTATATAAACTAAAACA
* *
112474 ATTATTTTATGACAAAACAAAAGGTCATAA-AGATTTTAAATAGATAATTGTTC
128 ATTATTTTATGACAAAACAAAAGGTCATAACA-ATTTGAAATAGATAATTATTC
* * ** **
112527 AAATAGTCATAATTATTTGAACTTG-TTCGGTGAATAAATTTATCTTTGCAAATCTCTTGCTTAT
1 AAATAGTCATAACTATTTGAAC-TGATTCAGCAAATAAATTTAT-TTTTTAAATCTCTT-CTTAT
** * * * * * **
112591 TAATTTTTTTTTTGAATGTTAATAAATTAATACTATTTTATTTCGAATAAGCTTGTATAAACTGG
63 TAA----TTTTTAAAATATTATTAAATTAGTATTATTTTATTTCGAATAAGCTTATATAAACTAA
* * * * * *
112656 AAGAATTATTATATGACCAAATAAAAGATCAAAACAATTTTATGAAATAGATAATTATTC
124 AACAATTATTTTATGACAAAACAAAAGGTCATAACAA--TT-TGAAATAGATAATTATTC
* * ** * * *
112716 TAATAATTTTAACAATTTGAACTGATTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTA
1 AAATAGTCATAACTATTTGAACTGATTCAGCAAATAAATTTATTTTTTAAATCTCTT-CTTATTA
* * * *
112781 ATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCAAATAAGCTTATACAAAC-AAAACAAT
65 ATTTTTAAAATATTATTAAATTAGTATTATTTTATTTCGAATAAGCTTATATAAACTAAAACAAT
* ** * ** *
112845 TGTTTTATGTTAAAAGAAAAGGTCATAATGATTTGAAATAGATAATCATTC
130 TATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTC
* * * * * * * * * *
112896 ATAGAGTCTTAACTATTTGAACTGATTCAACAATTAGATTTATTTTTTAATTTTTTTGGTTATTA
1 AAATAGTCATAACTATTTGAACTGATTCAGCAAATAAATTTATTTTTTAAATCTCTT-CTTATTA
* * * ** * *
112961 AGTTTTGAAATATTATTAAATTAGTATTATTTTA-TTCTAAATAA-AATAGTATGAAC-AGAACC
65 ATTTTTAAAATATTATTAAATTAGTATTATTTTATTTC-GAATAAGCTTA-TATAAACTA-AAAC
* * ** * * * * *
113023 AATTGTTTGATGATGAAATAAAATGTTATAACAATTTGAAATAAATAATTATTG
127 AATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTC
* * * ** * * * * ** *
113077 AAATAGTCAAAACTATTTGAAATGGTTTGGTAAGTATATATATTTTTTAAATCTCTTACAAATTT
1 AAATAGTCATAACTATTTGAACTGATTCAGCAAATAAATTTATTTTTTAAATCTCTT-CTTATTA
* ** * * * * * * *
113142 ATTTTCT-AAATATTAATAAAACAATATTATTTTATTTCAAACAAACTTATATTAGCAAAAACAA
65 ATTTT-TAAAATATTATTAAATTAGTATTATTTTATTTCGAATAAGCTTATATAAACTAAAACAA
*
113206 TTGTTTTATGACAAAACAAA
129 TTATTTTATGACAAAACAAA
113226 TCTTTAAATA
Statistics
Matches: 951, Mismatches: 234, Indels: 92
0.74 0.18 0.07
Matches are distributed among these distances:
173 4 0.00
174 1 0.00
175 114 0.12
176 99 0.10
177 41 0.04
178 15 0.02
179 4 0.00
180 179 0.19
181 261 0.27
182 19 0.02
183 26 0.03
184 45 0.05
185 8 0.01
186 63 0.07
187 1 0.00
188 24 0.03
189 47 0.05
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
AAATAGTCATAACTATTTGAACTGATTCAGCAAATAAATTTATTTTTTAAATCTCTTCTTATTAA
TTTTTAAAATATTATTAAATTAGTATTATTTTATTTCGAATAAGCTTATATAAACTAAAACAATT
ATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTC
Found at i:114072 original size:180 final size:180
Alignment explanation
Indices: 113490--114723 Score: 984
Period size: 180 Copynumber: 6.9 Consensus size: 180
113480 AATTTAGTAT
* * * * * **
113490 GATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACT-AGTAT-GGTAAATAGATTT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-T-TCAATAAATAGATTT
** * * *
113553 ATTTACTAAA--TCT-CTT-TTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAAC
64 ATTTTTTAAATCTCTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTT-GAAT
* * * * * * *
113614 AAACTTATATGAA-CAAAAACATTTGTTTTACGACAAAACAAAAATGTCATAAT
128 AAGCTTGTATGAATGAAAAACAATTGTTTTATGACAAAACAAAAGT-TCATAAC
* * * * * * * * * *
113667 AATTTGAAATAGATAATTATTCATATAGCCTTAACCATTTGAATTGGTTCAATAAACAAATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAATAAATAGATTTA-
* * * * ** *
113732 TTTTTTTTAAATCTATCAGTTATTAA-ATTTCATAATATTACCAGATTAGTATTATTTTATTTCG
65 --TTTTTTAAATCTCT-ACTTATTAATTTTTTA-AATATTAATAAATTAGTATTATTTTATTT-G
* * *
113796 AATAAGCTTGTATGAA-GATAAATAATTGTTTTATGACAAAATAAAAGGTT-ATAAC
125 AATAAGCTTGTATGAATGAAAAACAATTGTTTTATGACAAAACAAAA-GTTCATAAC
* * **
113851 GATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGATAAATAGATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAATAAATAGATTTAT
* *
113916 TTTTTAAATCTCCTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTAATAG
66 TTTTTAAATCT-CTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTGAATAA
* * *
113981 GCTTGTATG-GTGAAAAATAATTGTTTTATGACAAAACAAAAGTTCATAAT
130 GCTTGTATGAATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAAC
* * * *
114031 GATTTGAAATAGATAATTGTTTAAATAGCCATAATTATTTGAACTGATTCAATAAACT-TATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAATAAA-TAGATTTA
* * * * * *
114095 TGTTTTAAATCTCTAACTTATCAA-TTTTTATAACATTAATAAAGTAATATTATTTTATTTCATA
65 TTTTTTAAATCTCT-ACTTATTAATTTTTTA-AATATTAATAAATTAGTATTATTTTATTTGA-A
* * * *
114159 TAAGCTT-TATGAATTG--AAACAATTGTTTTATGATAAAATATAAGGTCATAAC
127 TAAGCTTGTATGAA-TGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAAC
* * * * **
114211 GATTTTAAATAGATAATTGTTCAAATAGTTAAAAATATTTGAACTTG-TTCGGTAAATAGATTT-
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTCAATAAATAGATTTA
* * * * * **
114274 TTTTTTCTAATTTCTTACTTAATAATTTTCTGAATGGTAATAAATTAGTATTATTTTATTTCGAA
65 TTTTTT-AAATCTC-TACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTT-GAA
* * * * *
114339 TAAG-TATGTATGATTG--AAGCAATTGTTTTATGACTAAACAAAAGGTCAAAAC
127 TAAGCT-TGTATGAATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAAC
* * ** * *
114391 GATTTGAAATAGATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTCAGCAAACACATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAATAAATAGATTTAT
* * * * * * * * *
114456 TTTTTAAATCTATACTTATTAA-TGTTTAGAATATTATTTATTTAGCAATATTTTACTCTAAATA
66 TTTTTAAATCTCTACTTATTAATTTTTTA-AATATTAATAAATTAGTATTATTTTA-TTTGAATA
* * * *
114520 AGCTTGT-TGAATAGAAATTA-AA-TGTTTTAGGATAAAA-AAAA-ATCATAAC
129 AGCTTGTATGAAT-GAAA-AACAATTGTTTTATGACAAAACAAAAGTTCATAAC
* * * *
114569 AATTGGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-AGTTCAATAAAGAGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-TTCAATAAATAGATTTA
* ** * *
114633 GTTTTTAAA--TCT-CTTATTAATTTTCAAAATAGTAATAAAATAGTATTATTTTATTTTGAATA
65 TTTTTTAAATCTCTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTA-TTTGAATA
** *
114695 ATTTTGTATGAAT-AGAAACAATTGGTTTT
129 AGCTTGTATGAATGAAAAACAATT-GTTTT
114724 GGAACATTAA
Statistics
Matches: 834, Mismatches: 178, Indels: 91
0.76 0.16 0.08
Matches are distributed among these distances:
173 1 0.00
174 4 0.00
175 39 0.05
176 16 0.02
177 45 0.05
178 74 0.09
179 62 0.07
180 378 0.45
181 76 0.09
182 9 0.01
184 60 0.07
185 69 0.08
186 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAATAAATAGATTTAT
TTTTTAAATCTCTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTGAATAAG
CTTGTATGAATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAAC
Found at i:114269 original size:360 final size:356
Alignment explanation
Indices: 113490--114723 Score: 1197
Period size: 360 Copynumber: 3.4 Consensus size: 356
113480 AATTTAGTAT
* * * * * * *
113490 GATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACTAGTAT-GGTAAATAGATTTA
1 GATTGGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGT-TCGATAAATAGATTTA
** * * * *
113554 TTTACTAAATCTCTT-TTAATTTT-TGAAATATTAATAAATTAATATTATTTTATTTCGAACAAA
65 TTTTTTAAATCTCTTATTAATTTTCT-AAATAGTAATAAATTAGTATTATTTTATTTCGAATAAG
* ** * * * *
113617 CTTATATGAACAAAAACATTTGTTTTACGACAAAACAAAAATGTCATAATAATTTGAAATAGATA
129 CTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGT-TCATAATGATTTGAAATAGATA
* * * * * *
113682 ATTATTCATATAGCCTTAACCATTTGAATTGGTTCAATAAACAAATTTATTT-TTTTTTAAATCT
193 ATTGTTTAAATAGCCTTAACTATTTGAACTGATTCAATAAAC----TTATTTATTTTTTAAATCT
* * * ** *
113746 ATCAGTTATTAAATTTCATAATATTACCAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGA
254 AT-ACTTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGA
* * *
113811 AGAT-AAATAATTGTTTTATGACAAAATAAAAGGTTATAAC
318 A-TTGAAATAATTGTTTTATGATAAAAT-AAAGGTCATAAC
* *
113851 GATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACT-GATTTGATAAATAGATTTA
1 GATTGGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAG-TTCGATAAATAGATTTA
* * *
113915 TTTTTTAAATCTCCTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTT-TAAT
65 TTTTTTAAA--T-CT-CTTATTAATTTTCTAAATAGTAATAAATTAGTATTATTTTATTTCGAAT
* * *
113979 AGGCTTGTATGGTGAAAAATAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGA
126 AAGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGA
* * * *
114044 TAATTGTTTAAATAGCCATAATTATTTGAACTGATTCAATAAACTTATTTATGTTTTAAATCTCT
191 TAATTGTTTAAATAGCCTTAACTATTTGAACTGATTCAATAAACTTATTTATTTTTTAAATCTAT
* * * *
114109 AACTTATCAATTTTTATAACATTAATAAAGTAATATTATTTTATTTC-ATATAAGCTT-TATGAA
256 -ACTTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCGA-ATAAGCTTGTATGAA
*
114172 TTGAAACAATTGTTTTATGATAAAATATAAGGTCATAAC
319 TTGAAATAATTGTTTTATGATAAAATA-AAGGTCATAAC
** * * * * * *
114211 GATTTTAAATAGATAATTGTTCAAATAGTTAAAAATATTTGAACTTGTTCGGTAAATAGATTTTT
1 GATTGGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAATAGATTTAT
* * * *
114276 TTTTCTAATTTCTTACTTAATAATTTTCTGAATGGTAATAAATTAGTATTATTTTATTTCGAATA
66 TTTT-TAA-ATC-T-CTTATTAATTTTCTAAATAGTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
114341 AG-TATGTATGATTG--AAGCAATTGTTTTATGACTAAACAAAAGGTCAAAACGATTTGAAATAG
127 AGCT-TGTATGA-TGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAG
* ** **
114403 ATAATTGTTCT-AATAGTCTTAACTATTTGAACTGATTCAGCAAACACATTTATTTTTTAAATCT
190 ATAATTGTT-TAAATAGCCTTAACTATTTGAACTGATTCAATAAACTTATTTATTTTTTAAATCT
* * * * * * * * *
114467 ATACTTATTAATGTTTAGAATATTATTTATTTAGCAATATTTTA-CTCTAAATAAGCTTGT-TGA
254 ATACTTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGA
* * * **
114530 ATAGAAATTAAATGTTTTAGGATAAAA-AAAAATCATAAC
318 ATTGAAA-TAATTGTTTTATGATAAAATAAAGGTCATAAC
* * * * *
114569 AATTGGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAATAAAGAGATTTAG
1 GATTGGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAATAGATTTAT
* * * **
114634 TTTTTAAATCTCTTATTAATTTTCAAAATAGTAATAAAATAGTATTATTTTATTTTGAATAATTT
66 TTTTTAAATCTCTTATTAATTTTCTAAATAGTAATAAATTAGTATTATTTTATTTCGAATAAGCT
*
114699 TGTATGAAT-AGAAACAATTGGTTTT
131 TGTATG-ATGAAAAACAATT-GTTTT
114724 GGAACATTAA
Statistics
Matches: 723, Mismatches: 121, Indels: 63
0.80 0.13 0.07
Matches are distributed among these distances:
354 52 0.07
355 10 0.01
356 7 0.01
357 3 0.00
358 67 0.09
359 52 0.07
360 262 0.36
361 132 0.18
362 2 0.00
363 1 0.00
364 57 0.08
365 40 0.06
366 37 0.05
367 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (356 bp):
GATTGGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAATAGATTTAT
TTTTTAAATCTCTTATTAATTTTCTAAATAGTAATAAATTAGTATTATTTTATTTCGAATAAGCT
TGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATT
GTTTAAATAGCCTTAACTATTTGAACTGATTCAATAAACTTATTTATTTTTTAAATCTATACTTA
TTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATTGAAAT
AATTGTTTTATGATAAAATAAAGGTCATAAC
Found at i:115046 original size:181 final size:179
Alignment explanation
Indices: 114734--115331 Score: 594
Period size: 181 Copynumber: 3.3 Consensus size: 179
114724 GGAACATTAA
* *
114734 TTTTTAAAAT-TTTTACTTATTAATTTTTGGAACATTAATAAATTTA-TATTATTTTATTTGAAA
1 TTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAA-TTAGTATTATTTTATTT-AAA
* * * * *
114797 TAAGCCTGAAC--GAATAGAACCAATTATTTTATGATAAAACAAAAAATTGTAATGTTTTGAAAT
63 TAAG-CT-AACATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTTATAATGATTTGAAAT
*
114860 AGATAATTATTAAGATAGTCATAACTATTT-AACTTGTTCGATAAAGAGATTTAT
126 AGATAATTATTAAGATAGTCATAACCATTTGAACTTGTTCGATAAA-AGATTTAT
* *
114914 TTTTTTAATTCTTTTACTTTTTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAAT
1 TTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTT-AAAT
* * * * *
114979 AAGCTAACATGAATTGAAACAATTGTTTTATTACAAAA-AAAAATGTTACAATGATTTGAAGTAG
64 AAGCTAACATGAATAGAAACAATTATTTTATGACAAAACAAAAA-GTTATAATGATTTGAAATAG
* * * *
115043 ATAATTATTCAA-ATAGTCATGACCATTTGAACTTGTTTGGT--AA-ACTTAT
128 ATAATTATT-AAGATAGTCATAACCATTTGAACTTGTTCGATAAAAGATTTAT
* * * * *
115092 TTTTTTAAATCTTTTACTTATTAATTGTTGAATTATTAATAAATCAATATTATTTTAATGT-GAT
1 TTTTTTAAATCTTTTACTTATTAATTTTTGAA-TATTAATAAATTAGTATTATTTT-ATTTAAAT
*** * ** *
115156 AAGCTTGTATGGACGGAAACAATTATTTTATGACAAAACAAAAAAGTCATAA-GAATTTGAAATA
64 AAGCTAACATGAATAGAAACAATTATTTTATGACAAAAC-AAAAAGTTATAATG-ATTTGAAATA
* * * * * *
115220 AATAATTATTTAGATATTCATAACGATTTGAATTTGTTCGAAAAATAGATTTA-
127 GATAATTATTAAGATAGTCATAACCATTTGAACTTGTTCGATAAA-AGATTTAT
* *
115273 TTTTTTAAATCTTTTACTTATTAATTGTCTT-AATGTTAATAAATTTGTATTATTTTATT
1 TTTTTTAAATCTTTTACTTATTAATT-T-TTGAATATTAATAAATTAGTATTATTTTATT
115332 CGAAGTAAGC
Statistics
Matches: 345, Mismatches: 54, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
177 37 0.11
178 97 0.28
179 12 0.03
180 22 0.06
181 157 0.46
182 18 0.05
183 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (179 bp):
TTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTAGTATTATTTTATTTAAATAA
GCTAACATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTTATAATGATTTGAAATAGATA
ATTATTAAGATAGTCATAACCATTTGAACTTGTTCGATAAAAGATTTAT
Found at i:115415 original size:359 final size:356
Alignment explanation
Indices: 114734--115445 Score: 749
Period size: 359 Copynumber: 2.0 Consensus size: 356
114724 GGAACATTAA
* ** *
114734 TTTTTAAAATTTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTATTTGAAATA
1 TTTTTAAAATTTTTACTTATTAATTGTTGGAACATTAATAAATCAATATTATTTTATGTG-AATA
* * * ** * *
114799 AGCCTGAACGAATAGAACCAATTATTTTATGATAAAACAAAAAATTGTAATGTTTTGAAATAGAT
65 AGCCTGAACGAACAGAAACAATTATTTTATGACAAAACAAAAAATCATAATGATTTGAAATAAAT
* * *
114864 AATTATTAAGATAGTCATAACTATTTAACTTGTTCGATAAAGAGATTTATTTTTTTAATTCTTTT
130 AATTATTAAGATAGTCATAACGATTTAACTTGTTCGAAAAAGAGATTTATTTTTTTAAATCTTTT
* *
114929 ACTTTTTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATT
195 ACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATC
* * ** * * * ** ** *
114994 GAAACAATTGTTTTATTACAAAAAAAAATGTTACAATGATTTGAAGTAGATAATTATTCAAATAG
259 AAAAAAATCATTATATGACAAAAAAAAATGCTACAACCATTCCAAATAGATAATTATTCAAATAG
* *
115059 TCATGACCATTTGAACTTGTTTGGTAAACTTAT
324 TCATAACCATTTAAACTTGTTTGGTAAACTTAT
* *
115092 TTTTTTAAATCTTTTACTTATTAATTGTT-GAATTATTAATAAATCAATATTATTTTAATGTG-A
1 TTTTTAAAAT-TTTTACTTATTAATTGTTGGAA-CATTAATAAATCAATATTATTTT-ATGTGAA
* * * * *
115155 TAAGCTTGTATGGACGGAAACAATTATTTTATGACAAAACAAAAAAGTCATAA-GAATTTGAAAT
63 TAAGCCTGAACGAACAGAAACAATTATTTTATGACAAAACAAAAAA-TCATAATG-ATTTGAAAT
* * * *
115219 AAATAATTATTTAGATATTCATAACGATTTGAATTTGTTCGAAAAATAGATTTA-TTTTTTAAAT
126 AAATAATTATTAAGATAGTCATAACGATTT-AACTTGTTCGAAAAAGAGATTTATTTTTTTAAAT
* * * * *
115283 CTTTTACTTATTAATTGTCTT-AATGTTAATAAATTTGTATTATTTTA-TTCGAAGTAAGCTTAT
190 CTTTTACTTATTAATT-T-TTGAATATTAATAAATTAGTATTATTTTATTTC-AAATAAGCTAAC
** * *
115346 ATGAA-CAAATAAAATCATTATATGACAAACCAAAA-GCCTATAGCCATTCCAAATCA-ATAATT
252 ATGAATCAAA-AAAATCATTATATGACAAAAAAAAATG-CTACAACCATTCCAAAT-AGATAATT
* * **
115408 GTTCAAATGGTCATAAGTATTTAAACTTGTTTGGTAAA
314 ATTCAAATAGTCATAACCATTTAAACTTGTTTGGTAAA
115446 TAGATTCATT
Statistics
Matches: 288, Mismatches: 54, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
358 58 0.20
359 202 0.70
360 26 0.09
361 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (356 bp):
TTTTTAAAATTTTTACTTATTAATTGTTGGAACATTAATAAATCAATATTATTTTATGTGAATAA
GCCTGAACGAACAGAAACAATTATTTTATGACAAAACAAAAAATCATAATGATTTGAAATAAATA
ATTATTAAGATAGTCATAACGATTTAACTTGTTCGAAAAAGAGATTTATTTTTTTAAATCTTTTA
CTTATTAATTTTTGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATCAA
AAAAATCATTATATGACAAAAAAAAATGCTACAACCATTCCAAATAGATAATTATTCAAATAGTC
ATAACCATTTAAACTTGTTTGGTAAACTTAT
Found at i:115979 original size:19 final size:20
Alignment explanation
Indices: 115957--116006 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
115947 ATTAATGTTA
115957 TAATTAAT-TAT-TATTTAAT
1 TAATTAATATATATA-TTAAT
115976 TAA-TAATATATATATTAAT
1 TAATTAATATATATATTAAT
*
115995 TAATTAAAATAT
1 TAATTAATATAT
116007 TAAAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.15
19 14 0.52
20 9 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATATATATATTAAT
Found at i:116030 original size:16 final size:16
Alignment explanation
Indices: 116011--116044 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
116001 AAATATTAAA
116011 AAATTTACAA-TAATAT
1 AAATTTA-AATTAATAT
116027 AAATTTAAATTAATAT
1 AAATTTAAATTAATAT
116043 AA
1 AA
116045 TAATAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTTAAATTAATAT
Found at i:116227 original size:19 final size:20
Alignment explanation
Indices: 116175--116227 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
116165 ATATTAATTA
*
116175 TATTAATATTAATATAATATT
1 TATTAATATT-ATATAATAAT
116196 TATTGAATA--ATATAATAAT
1 TATT-AATATTATATAATAAT
116215 TATT-ATATTATAT
1 TATTAATATTATAT
116228 TTTATTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 3 0.11
19 17 0.61
21 4 0.14
22 4 0.14
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TATTAATATTATATAATAAT
Found at i:117026 original size:181 final size:180
Alignment explanation
Indices: 116606--117713 Score: 838
Period size: 177 Copynumber: 6.2 Consensus size: 180
116596 TATTAACATA
** * * * * *
116606 ACAAAACAAAAAATTATAA-CATGTTGAAATAAATAA-TAGCTT-AAATAGCCATAATGATTAGA
1 ACAAAACAAAAGGTTATAATGAT-TTGAAATAGATAATTA--TTCAAATAGTCATAATTATTTGA
* * * *
116668 ACTTGTTTGGTAAATAGATTTA-TTTTTAAATCT-TTTACTTATTAATTATCTT--AATATTAAT
63 A-TTGTTTAGTAAACAAAGTTATTTTTTAAATCTCTTTACTTATTAATT-T-TTGAAATATTAAT
* * ** * * *
116729 AAATTTGTATTATTTTA-TTCGAAATAAGCTTAGATGAACAAAAAAATTTCTTTTATT
125 AAATTAGTATTATTTTATTTC-AAATAAGCTTATATGAATGAAACAA-TTGTTTTATG
* * * ** *
116786 ACAAAACAAAAGGTTATAGCT-ATTTCAAATAGATAATTATTCAAACAGTTTTAATTATTTAAAT
1 ACAAAACAAAAGGTTATA-ATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAA-
* * *
116850 TTGTTTAGTAAACAAAGTAATTTTTTAAATCTCTTTA-TTATTAATTTTTGGATTATTAATAAAT
64 TTGTTTAGTAAACAAAGTTATTTTTTAAATCTCTTTACTTATTAATTTTTGAAATATTAATAAAT
* * * *
116914 TAGTATTATTTTATTTTAAACAAGCTTATATGAACTGAAACAACTCTTTTATG
129 TAGTATTATTTTATTTCAAATAAGCTTATATGAA-TGAAACAATTGTTTTATG
* * * * * *
116967 ACAAATCAAAAGGTCATAACGATTTGAAATAGCTAATTATTCAAATTGTCATGATTATTTG-ATC
1 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAAT-
* * ** * * ** *
117031 TAGTGTGGTAAAC---G-TATTTTAAAAAT-TTTTTACTTACTAA-TCATCAAACTATTAATAAA
65 T-GTTTAGTAAACAAAGTTATTTTTTAAATCTCTTTACTTATTAATTTTTGAAA-TATTAATAAA
* * *
117090 TTAGTATTATTTTAATGCAAATAAGCTTGTATGAATAGAAACAATTGTTTTATG
128 TTAGTATTATTTTATTTCAAATAAGCTTATATGAAT-GAAACAATTGTTTTATG
* * * * *
117144 ACAAAACAAAAAGTAATAATGATTTGAAATATATAATTATTCAAATAGT-ATAATTTTTTGAACT
1 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAATT
* * *
117208 GGTTAGGTAAA-AAGAATTATTTTTTAAATCTC-TTACTTATTATTTTTTGAAATATTAATAAAT
66 GTTTA-GTAAACAA-AGTTATTTTTTAAATCTCTTTACTTATTAATTTTTGAAATATTAATAAAT
* *
117271 TCA-TTTTATTTTATTTCGAATAAGC-TAGTATGAATTGAGAA-AATTGTTTTATG
129 T-AGTATTATTTTATTTCAAATAAGCTTA-TATGAA-TGA-AACAATTGTTTTATG
* * * * * *
117324 ACAAGACAAAATGTTATAATGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAATT
1 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAATT
* * * * * * * * *
117389 GATTCGACAAACAAATTTATTTTTTAAATC-CCTTAGTTATTAATTTTTTGGAATATTATTAGAT
66 GTTTAG-TAAACAAAGTTATTTTTTAAATCTCTTTACTTATTAA-TTTTTGAAATATTAATAAAT
* ** * *
117453 TAGTATTGTTTTATTTTGAATAAGCTTGTATGAATAGAAATAATTGTTTTATG
129 TAGTATTATTTTATTTCAAATAAGCTTATATGAAT-GAAACAATTGTTTTATG
* * * * * * * *
117506 ATATAATAAAAGGTTATAATGATTTGAAGTATAGAATTGTTCAAATAGTCATAACTATTTGAACT
1 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAA-T
* * *
117571 AG-TTCGATAAACAAA-TTCATTTTTTAAA--TC--T-CTTATTAATTTTTGAAAGATTAATAAA
65 TGTTTAG-TAAACAAAGTT-ATTTTTTAAATCTCTTTACTTATTAATTTTTGAAATATTAATAAA
* * * * * ** *
117629 TTATTATTATTTTATTTCGAATAATCATGTATGATAAAAAACAATTGTTATATG
128 TTAGTATTATTTTATTTCAAATAAGCTTATATGA-ATGAAACAATTGTTTTATG
* * *
117683 ACCAAACAAAAGGTGATAACGATTTGAAATA
1 ACAAAACAAAAGGTTATAATGATTTGAAATA
117714 ATATCTTGTT
Statistics
Matches: 744, Mismatches: 142, Indels: 87
0.76 0.15 0.09
Matches are distributed among these distances:
175 2 0.00
176 24 0.03
177 195 0.26
178 9 0.01
179 7 0.01
180 173 0.23
181 186 0.25
182 145 0.19
183 3 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAATT
GTTTAGTAAACAAAGTTATTTTTTAAATCTCTTTACTTATTAATTTTTGAAATATTAATAAATTA
GTATTATTTTATTTCAAATAAGCTTATATGAATGAAACAATTGTTTTATG
Found at i:117693 original size:539 final size:535
Alignment explanation
Indices: 116606--117713 Score: 1147
Period size: 539 Copynumber: 2.1 Consensus size: 535
116596 TATTAACATA
* * * * ** *
116606 ACAAAACAAAAAATTATAAC-ATGTTGAAATAAATAA-TAGCTT-AAATAGCCATAATGATTAGA
1 ACAAAACAAAAAGTAATAACGAT-TTGAAATATATAATTA--TTCAAATAG-TATAATTTTTTGA
* * * * *
116668 ACTTGTTTGGTAAATAGATTTATTTTTAAATCTTTTACTTATTAATTATCTTAATATTAATAAAT
62 ACTGGTTAGGTAAAAAGAATTATTTTTAAATCTCTTACTTATTAATTATCTTAATATTAATAAAT
** *
116733 TTGTATTATTTTATTCGAAATAAGCTTAGATGAACAAAAAAATTTCTTTTATTACAAAACAAAAG
127 TCATATTATTTTATTCGAAATAAGCTTAGATGAACAAAAAAATTTCTTTTATGACAAAACAAAAG
* * * * *
116798 GTTATAGCTATTTCAAATAGATAATTATTCAAACAGTTTTAATTATTTAAATTTGTTTAGTAAAC
192 GTTATAGATATTTCAAATAGATAATTATTCAAACAGTCTTAACTATTTAAATTTGATTAGCAAAC
* *
116863 AAAGTAATTTTTTAAATCTCTTTATTATTAATTTTTGGATTATTAATAAATTAGTATTATTTTAT
257 AAAGTAATTTTTTAAATCTCCTTATTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTAT
116928 TTTAAACAAGCTTATATGAACTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAACGATTTG
322 TTTAAACAAGCTTATATGAACTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAACGATTTG
* * * * * *
116993 AAATAGCTAATTATTCAAATTGTCATGATTATTTGATCTAGTGTGGTAAACGTATTTTAAAAATT
387 AAATAGC-AATTATTCAAATAGTCATAACTATTTGAACTAGTGTGATAAACGTATTTTAAAAATC
* * *
117058 TTTTACTTACTAATCATCAAACTATTAATAAATTAGTATTATTTTAATGCAAATAAGCTTGTATG
451 TCTTACTTAC-AATCATCAAACGATTAATAAATTAGTATTATTTTAATGCAAATAAGCATGTATG
* *
117123 AATAGAAACAATTGTTTTATG
515 AATAAAAACAATTGTTATATG
*
117144 ACAAAACAAAAAGTAATAATGATTTGAAATATATAATTATTCAAATAGTATAATTTTTTGAACTG
1 ACAAAACAAAAAGTAATAACGATTTGAAATATATAATTATTCAAATAGTATAATTTTTTGAACTG
*
117209 GTTAGGTAAAAAGAATTATTTTTTAAATCTCTTACTTATT-ATT-TTTTGAAATATTAATAAATT
66 GTTAGGTAAAAAGAATTA-TTTTTAAATCTCTTACTTATTAATTATCTT--AATATTAATAAATT
* ** * * *
117272 CATTTTATTTTATTTCG-AATAAGC-TAGTATGAATTGAGAAAA-TTGTTTTATGACAAGACAAA
128 CATATTATTTTA-TTCGAAATAAGCTTAG-ATGAA-CAAAAAAATTTCTTTTATGACAAAACAAA
* * * * * * *
117334 ATGTTATA-ATGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAA-TTGATTCGAC
190 AGGTTATAGAT-ATTTCAAATAGATAATTATTCAAACAGTCTTAACTATTTAAATTTGATTAG-C
* * * * *
117397 AAACAAATTTATTTTTTAAATC-CCTTAGTTATTAATTTTTTGGAATATTATTAGATTAGTATTG
253 AAACAAAGTAATTTTTTAAATCTCCTTA-TTATTAA-TTTTTGGAATATTAATAAATTAGTATTA
* * * * * * * *
117461 TTTTATTTTGAATAAGCTTGTATGAA-TAGAAATAATTGTTTTATGATATAAT-AAAAGGTTATA
316 TTTTATTTTAAACAAGCTTATATGAACT-GAAACAACTCTTTTATGACA-AATCAAAAGGTCATA
* * *
117524 ATGATTTGAAGTATAG-AATTGTTCAAATAGTCATAACTATTTGAACTAGT-TCGATAAACAAAT
379 ACGATTTGAA--ATAGCAATTATTCAAATAGTCATAACTATTTGAACTAGTGT-GATAAAC---G
** * ** * * * * *
117587 TCATTTTTTAAATCTCTTA-TTA-ATTTTTGAAA-GATTAATAAATTATTATTATTTTATTTCGA
438 T-ATTTTAAAAATCTCTTACTTACAATCATCAAACGATTAATAAATTAGTATTATTTTAATGCAA
*
117649 ATAATCATGTATG-ATAAAAAACAATTGTTATATG
502 ATAAGCATGTATGAAT-AAAAACAATTGTTATATG
* * *
117683 ACCAAACAAAAGGTGATAACGATTTGAAATA
1 ACAAAACAAAAAGTAATAACGATTTGAAATA
117714 ATATCTTGTT
Statistics
Matches: 468, Mismatches: 79, Indels: 45
0.79 0.13 0.08
Matches are distributed among these distances:
536 3 0.01
537 46 0.10
538 180 0.38
539 209 0.45
540 9 0.02
541 4 0.01
542 4 0.01
543 13 0.03
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (535 bp):
ACAAAACAAAAAGTAATAACGATTTGAAATATATAATTATTCAAATAGTATAATTTTTTGAACTG
GTTAGGTAAAAAGAATTATTTTTAAATCTCTTACTTATTAATTATCTTAATATTAATAAATTCAT
ATTATTTTATTCGAAATAAGCTTAGATGAACAAAAAAATTTCTTTTATGACAAAACAAAAGGTTA
TAGATATTTCAAATAGATAATTATTCAAACAGTCTTAACTATTTAAATTTGATTAGCAAACAAAG
TAATTTTTTAAATCTCCTTATTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTTA
AACAAGCTTATATGAACTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAACGATTTGAAAT
AGCAATTATTCAAATAGTCATAACTATTTGAACTAGTGTGATAAACGTATTTTAAAAATCTCTTA
CTTACAATCATCAAACGATTAATAAATTAGTATTATTTTAATGCAAATAAGCATGTATGAATAAA
AACAATTGTTATATG
Found at i:118140 original size:14 final size:15
Alignment explanation
Indices: 118107--118142 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
118097 GATATTTATT
118107 TAAT-ATTATTATAA
1 TAATAATTATTATAA
118121 TAATAATTATTA-AA
1 TAATAATTATTATAA
118135 TAATAATT
1 TAATAATT
118143 TAAAATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATAATTATTATAA
Found at i:118344 original size:21 final size:22
Alignment explanation
Indices: 118300--118345 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
118290 AAATTGATTA
*
118300 TTAAAATTAAATAAAATAATAT
1 TTAAAATTAAATAAAATAAGAT
* *
118322 TTAAAA-TAAATACAATTAGAT
1 TTAAAATTAAATAAAATAAGAT
118343 TTA
1 TTA
118346 TAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAATTAAATAAAATAAGAT
Found at i:119712 original size:28 final size:26
Alignment explanation
Indices: 119681--119734 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
119671 AAATAAGTAT
119681 TATTA-ATTAATTA-TTAATATTATA
1 TATTATATTAATTATTTAATATTATA
119705 -ATTATATTAATTATTTAATATTATA
1 TATTATATTAATTATTTAATATTATA
119730 TATTA
1 TATTA
119735 AGAAATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 4 0.15
24 8 0.30
25 11 0.41
26 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TATTATATTAATTATTTAATATTATA
Found at i:119912 original size:26 final size:29
Alignment explanation
Indices: 119855--119912 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
119845 ATATATTATC
*
119855 TATTATTACAAATATATAATATTATAACT
1 TATTATTACAAATATATAATATTATAAAT
* *
119884 TATTGTTATAAATAT-TAAT-TT-TAAAT
1 TATTATTACAAATATATAATATTATAAAT
119910 TAT
1 TAT
119913 ATAATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 7 0.27
27 2 0.08
28 4 0.15
29 13 0.50
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (29 bp):
TATTATTACAAATATATAATATTATAAAT
Found at i:119982 original size:11 final size:11
Alignment explanation
Indices: 119951--119983 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
119941 TAGGTATCTA
*
119951 ATATAATTACG
1 ATATAATTATG
119962 ATATAATTATG
1 ATATAATTATG
119973 ATATAATTATG
1 ATATAATTATG
119984 TAAATAGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (11 bp):
ATATAATTATG
Found at i:120139 original size:23 final size:23
Alignment explanation
Indices: 120102--120148 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
120092 AATTATTAAA
*
120102 TTAATTAAATAATAATTAAATAT
1 TTAATTAAATAATAAATAAATAT
* * *
120125 TTAATTAATTTATAAATAATTAT
1 TTAATTAAATAATAAATAAATAT
120148 T
1 T
120149 AAAATTACTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAATTAAATAATAAATAAATAT
Found at i:120426 original size:21 final size:20
Alignment explanation
Indices: 120400--120448 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
120390 AATCTTATAA
*
120400 TATATAAACAGTTTTATTTAT
1 TATATAAACAGTTTAATTT-T
*
120421 TATAT-AATAGTTTAATTTT
1 TATATAAACAGTTTAATTTT
120440 TAATATAAA
1 T-ATATAAA
120449 TATATTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 15 0.62
21 7 0.29
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
TATATAAACAGTTTAATTTT
Found at i:120438 original size:20 final size:20
Alignment explanation
Indices: 120409--120467 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
120399 ATATATAAAC
*
120409 AGTTTTATTTATT-ATATAAT
1 AGTTTAATTT-TTAATATAAT
120429 AGTTTAATTTTTAATATAA-
1 AGTTTAATTTTTAATATAAT
*
120448 A-TAT-ATTTTATAATATAAT
1 AGTTTAATTTT-TAATATAAT
120467 A
1 A
120468 TTATTTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
17 5 0.15
18 10 0.29
19 4 0.12
20 15 0.44
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
AGTTTAATTTTTAATATAAT
Found at i:120479 original size:18 final size:18
Alignment explanation
Indices: 120413--120530 Score: 73
Period size: 18 Copynumber: 6.2 Consensus size: 18
120403 ATAAACAGTT
120413 TTATTTATT-ATATAATA
1 TTATTTATTAATATAATA
120430 GTTTAATTT-TTAATATAA-A
1 --TT-ATTTATTAATATAATA
120449 TATATTT-TATAATATAATA
1 T-TATTTAT-TAATATAATA
120468 TTATTTATTAATAGTAAGTAAAA
1 TTATTTATTAATA-TAA-T---A
* *
120491 TAATTTATTAATATATTA
1 TTATTTATTAATATAATA
* *
120509 TAATTTATAAATATATATA
1 TTATTTATTAATATA-ATA
120528 TTA
1 TTA
120531 ATATCAATTA
Statistics
Matches: 82, Mismatches: 5, Indels: 24
0.74 0.05 0.22
Matches are distributed among these distances:
17 6 0.07
18 34 0.41
19 15 0.18
20 11 0.13
21 1 0.01
22 2 0.02
23 13 0.16
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.52
Consensus pattern (18 bp):
TTATTTATTAATATAATA
Found at i:120614 original size:14 final size:14
Alignment explanation
Indices: 120592--120663 Score: 62
Period size: 14 Copynumber: 5.2 Consensus size: 14
120582 TATTTGTTAT
*
120592 TAATAATAATATTA
1 TAATTATAATATTA
120606 TAATTATAATA-TA
1 TAATTATAATATTA
*
120619 GTAGTTATTAATA-TA
1 -TAATTA-TAATATTA
120634 TAATTAT-AT-TTA
1 TAATTATAATATTA
*
120646 TAATTGGTAATATTA
1 TAATT-ATAATATTA
120661 TAA
1 TAA
120664 ATAGTATCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
12 9 0.19
13 4 0.08
14 22 0.46
15 13 0.27
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (14 bp):
TAATTATAATATTA
Found at i:120925 original size:5 final size:5
Alignment explanation
Indices: 120893--120942 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
120883 ATTAATAGTC
* *
120893 ATAAT AGTAA- ATAAT TTACT ATTAAT ATAAT ATAAT ATAAT ATAAT -TAAT
1 ATAAT A-TAAT ATAAT ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT
120943 TATTTTGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
4 7 0.18
5 24 0.63
6 7 0.18
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:120940 original size:24 final size:23
Alignment explanation
Indices: 120862--120942 Score: 58
Period size: 24 Copynumber: 3.3 Consensus size: 23
120852 TTAATTACTA
* *
120862 AATTAATATAAATATATTGTAATT
1 AATTAATAT-AATATAATATAATT
*
120886 AA-TAGTCATAATAGTAA-ATAATTT
1 AATTAAT-ATAATA-TAATATAA-TT
120910 ACTATTAATATAATATAATATAATAT
1 A--ATTAATATAATATAATATAAT-T
120936 AATTAAT
1 AATTAAT
120943 TATTTTGTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
23 10 0.22
24 15 0.33
25 4 0.09
26 13 0.29
27 3 0.07
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (23 bp):
AATTAATATAATATAATATAATT
Found at i:120989 original size:13 final size:13
Alignment explanation
Indices: 120973--120997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120963 ATTAAATTAA
120973 TATTATATAATTT
1 TATTATATAATTT
120986 TATTATATAATT
1 TATTATATAATT
120998 AACTATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTATATAATTT
Found at i:121604 original size:20 final size:20
Alignment explanation
Indices: 121576--121644 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
121566 GACTATTAAT
*
121576 AATATTTATAATCAAATATA
1 AATAATTATAATCAAATATA
* *
121596 AATAATTATAAACAATTATA
1 AATAATTATAATCAAATATA
* *
121616 TAT-ATTATAAT--TATATA
1 AATAATTATAATCAAATATA
*
121633 AATTATTATAAT
1 AATAATTATAAT
121645 TTAAATAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 6 0.15
18 8 0.20
19 7 0.17
20 19 0.47
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (20 bp):
AATAATTATAATCAAATATA
Found at i:121627 original size:25 final size:23
Alignment explanation
Indices: 121597--121642 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
121587 TCAAATATAA
121597 ATAATTATAAACAATTATATATATT
1 ATAATTATAAA-AATTAT-TATATT
*
121622 ATAATTATATAAATTATTATA
1 ATAATTATAAAAATTATTATA
121643 ATTTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 6 0.30
25 10 0.50
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAATTATAAAAATTATTATATT
Found at i:121629 original size:15 final size:15
Alignment explanation
Indices: 121609--121638 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
121599 AATTATAAAC
*
121609 AATTATATATATTAT
1 AATTATATAAATTAT
121624 AATTATATAAATTAT
1 AATTATATAAATTAT
121639 TATAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTATATAAATTAT
Found at i:121664 original size:24 final size:24
Alignment explanation
Indices: 121594--121664 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
121584 TAATCAAATA
*
121594 TAAATAATTATAAACAATTATATATAT
1 TAAATAA-TATAAATAATTATA-AT-T
* *
121621 TATAATTATATAAATTATTATAATT
1 TA-AATAATATAAATAATTATAATT
*
121646 TAAATAATATATATAATTA
1 TAAATAATATAAATAATTA
121665 AAAACTAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
24 14 0.38
25 3 0.08
26 2 0.05
27 14 0.38
28 4 0.11
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (24 bp):
TAAATAATATAAATAATTATAATT
Found at i:121789 original size:22 final size:20
Alignment explanation
Indices: 121754--121799 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
121744 TTATTTAAGT
*
121754 TTAATAATATTTTATTATTATA
1 TTAATAATAGTTTA-TATTA-A
*
121776 TTAATTATAGTTTATATTAA
1 TTAATAATAGTTTATATTAA
121796 TTAA
1 TTAA
121800 ACTTAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 5 0.23
22 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTAATAATAGTTTATATTAA
Found at i:122868 original size:17 final size:16
Alignment explanation
Indices: 122823--122896 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 16
122813 AAATAATAAT
122823 TTATTTA-ATAAAATATA
1 TTATTTATAT-AAAT-TA
*
122840 ATATTTAATATAAATTA
1 TTATTT-ATATAAATTA
*
122857 GTTATTTGTATAATATTA
1 -TTATTTATATAA-ATTA
*
122875 TTATTTATAAAAATTA
1 TTATTTATATAAATTA
122891 -TATTTA
1 TTATTTA
122897 ACAGATAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
15 6 0.12
16 4 0.08
17 22 0.46
18 14 0.29
19 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
TTATTTATATAAATTA
Found at i:122907 original size:51 final size:51
Alignment explanation
Indices: 122815--122912 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
122805 CTAAGATTAA
* * *
122815 ATAATAATTTATTTAATAAAATATAATATTTAATATAAATTAGTTATTTGT
1 ATAATAATTTATTTAATAAAATATAATATTTAACAGAAATTAATTATTTGT
* *
122866 ATAATATTATTATTT-ATAAAA-ATTATATTTAACAGATAATTAATTAT
1 ATAATAAT-TTATTTAATAAAATATAATATTTAACAGA-AATTAATTAT
122913 GTAATAGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 12 0.30
51 22 0.55
52 6 0.15
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (51 bp):
ATAATAATTTATTTAATAAAATATAATATTTAACAGAAATTAATTATTTGT
Found at i:123203 original size:36 final size:36
Alignment explanation
Indices: 123160--123230 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
123150 TCATAGTCAT
123160 TTATTTATAAAACAATTATATTAATA-ATAATATTAA
1 TTATTTATAAAACAATTATA-TAATACATAATATTAA
** *
123196 TTATTTATATTATAATTATATAATACTATAATATT
1 TTATTTATAAAACAATTATATAATAC-ATAATATT
123231 TACTATATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 5 0.17
36 17 0.57
37 8 0.27
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (36 bp):
TTATTTATAAAACAATTATATAATACATAATATTAA
Found at i:123252 original size:15 final size:15
Alignment explanation
Indices: 123189--123254 Score: 66
Period size: 15 Copynumber: 4.3 Consensus size: 15
123179 ATTAATAATA
123189 ATATTAATTATTTAT
1 ATATTAATTATTTAT
*
123204 AT-TATAATTATATA-
1 ATAT-TAATTATTTAT
123218 ATACTATAA-TATTTACT
1 ATA-T-TAATTATTTA-T
123235 ATATTAATTATTTAT
1 ATATTAATTATTTAT
123250 ATATT
1 ATATT
123255 GTTAATAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
14 3 0.07
15 25 0.58
16 12 0.28
17 3 0.07
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTAATTATTTAT
Found at i:123460 original size:14 final size:14
Alignment explanation
Indices: 123438--123472 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
123428 ATTTAAGCTA
* *
123438 TTAACAATTATTTG
1 TTAATAATTATTAG
123452 TTAATAATTATTAG
1 TTAATAATTATTAG
123466 TTAATAA
1 TTAATAA
123473 GTTACAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (14 bp):
TTAATAATTATTAG
Found at i:123685 original size:21 final size:19
Alignment explanation
Indices: 123658--123714 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
123648 TAAATTAGTA
123658 TTAATTATTATTAATATTT
1 TTAATTATTATTAATATTT
* *
123677 TAATAATTAATATAAATGATTT
1 T--TAATTATTATTAAT-ATTT
*
123699 TTACTTATTATTAATA
1 TTAATTATTATTAATA
123715 GTTAATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.07
20 11 0.37
21 12 0.40
22 5 0.17
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TTAATTATTATTAATATTT
Found at i:124013 original size:30 final size:31
Alignment explanation
Indices: 123971--124030 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
123961 ATTGCTTGGA
123971 TAAATTTAAATAAATAATTTACT-AATTTAT
1 TAAATTTAAATAAATAATTTACTAAATTTAT
* *
124001 TAAAGTTT-AATAAGTAATTTATTAAATTTA
1 TAAA-TTTAAATAAATAATTTACTAAATTTA
124031 GTTGTTATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (31 bp):
TAAATTTAAATAAATAATTTACTAAATTTAT
Found at i:124496 original size:14 final size:14
Alignment explanation
Indices: 124453--124500 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
124443 TAAATTAATT
124453 ATTATTAAT-AATA
1 ATTATTAATAAATA
* *
124466 AATAAT-ATATAATA
1 ATTATTAATA-AATA
124480 ATTATTAATAAATA
1 ATTATTAATAAATA
124494 ATTATTA
1 ATTATTA
124501 TTATTATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
12 2 0.07
13 4 0.14
14 19 0.68
15 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTATTAATAAATA
Found at i:124500 original size:17 final size:17
Alignment explanation
Indices: 124448--124503 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
124438 ATATATAAAT
*
124448 TAATTATT-ATTAATAA
1 TAATTATTAATAAATAA
*
124464 TAA--A-TAATATATAA
1 TAATTATTAATAAATAA
124478 TAATTATTAATAAATAA
1 TAATTATTAATAAATAA
*
124495 TTATTATTA
1 TAATTATTA
124504 TTATATTAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 1 0.03
14 10 0.31
16 4 0.12
17 17 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTATTAATAAATAA
Found at i:124544 original size:27 final size:27
Alignment explanation
Indices: 124496--124551 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
124486 AATAAATAAT
* *
124496 TATTATTATTATATTAACTAATATTAC
1 TATTATTATTAAATTAACTAATAATAC
*
124523 TATTATTATTGAAATTTA-TAATAATAC
1 TATTATTATT-AAATTAACTAATAATAC
124550 TA
1 TA
124552 ATTAATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (27 bp):
TATTATTATTAAATTAACTAATAATAC
Found at i:125006 original size:34 final size:35
Alignment explanation
Indices: 124939--125033 Score: 83
Period size: 34 Copynumber: 2.7 Consensus size: 35
124929 TACTAAATCC
*
124939 AATATTATCTAATAA-ATTAAATATTAAT-T-TAATT-
1 AATATTAT-TAATAATATT--ATAGTAATATATAATTG
124973 AATATATATTAATAATATTATA-TAATATATAATTG
1 AATAT-TATTAATAATATTATAGTAATATATAATTG
* * *
125008 GATATTATTAATTATTTTATAGTAAT
1 AATATTATTAATAATATTATAGTAAT
125034 TATTATATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
32 4 0.08
33 4 0.08
34 30 0.58
35 14 0.27
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.48
Consensus pattern (35 bp):
AATATTATTAATAATATTATAGTAATATATAATTG
Found at i:125516 original size:179 final size:179
Alignment explanation
Indices: 125181--125530 Score: 425
Period size: 180 Copynumber: 1.9 Consensus size: 179
125171 TCTGAACACA
* * *
125181 TTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATCATTATGACCATCTATTTTGTCT
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATCTATATTGTAT
* * * * *
125246 AAACCAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAATTAATATTCC
66 AAAACAATCGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATACTAATTAATTAACATTCA
*
125311 AAAATTAATAAGTAAAAAATTTTAAAAATAAATTTGTTTATCGAGTGAG
131 AAAATTAATAACTAAAAAATTTTAAAAATAAATTTGTTTATCGAGTGAG
* * * * * * * *
125360 TTCAAATAGTTATGATTGTTTGAACAGTTATTTATTTCAAATCATTATGATCTTTTGTATTGTTA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATCTATATTG-TA
* * *
125425 TAAAACAATCGTTTCTATTCATACAAGTTTATTTTGAATAAAATAA-ACTAA-TATATTAACATT
65 TAAAACAATCGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATACTAATTA-ATTAACATT
** * * * *
125488 CTAAAAATTAATAACTTGAAGATTTAAAAAATTAATTAGTTTA
129 C-AAAAATTAATAACTAAAAAATTTTAAAAATAAATTTGTTTA
125531 AATAATTATT
Statistics
Matches: 142, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
178 2 0.01
179 65 0.46
180 75 0.53
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.42
Consensus pattern (179 bp):
TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATCTATATTGTAT
AAAACAATCGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATACTAATTAATTAACATTCA
AAAATTAATAACTAAAAAATTTTAAAAATAAATTTGTTTATCGAGTGAG
Found at i:125579 original size:26 final size:25
Alignment explanation
Indices: 125515--125579 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
125505 GAAGATTTAA
* *
125515 AAAATTAATTAGTTTAAATAATTATT
1 AAAA-TAATTAATTTAAATAAATATT
*
125541 AAATTATAA-TAATTTAATTAAATATTT
1 AAA--ATAATTAATTTAAATAAATA-TT
125568 AAAATAATTAAT
1 AAAATAATTAAT
125580 AATTATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 4 0.12
26 19 0.59
27 8 0.25
28 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
AAAATAATTAATTTAAATAAATATT
Found at i:125700 original size:16 final size:16
Alignment explanation
Indices: 125681--125716 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
125671 ATAATACATA
*
125681 TTATAATTAATTAATT
1 TTATAATTAATTAAAT
*
125697 TTATATTTAATTAAAT
1 TTATAATTAATTAAAT
125713 TTAT
1 TTAT
125717 TATACTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATAATTAATTAAAT
Found at i:125793 original size:19 final size:19
Alignment explanation
Indices: 125772--125840 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
125762 ATTATTAAAT
*
125772 ATAATTTTATTAATTAATT
1 ATAATTTTATTAATTAATA
* *
125791 ATAATTATAATAATTACATA
1 ATAATTTTATTAATTA-ATA
*
125811 ATAATTATTATT-ATAAATA
1 ATAATT-TTATTAATTAATA
125830 ATAA-TTTATTA
1 ATAATTTTATTA
125841 GCTATGAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.12
18 1 0.02
19 21 0.51
20 11 0.27
21 3 0.07
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATTTTATTAATTAATA
Found at i:125806 original size:23 final size:24
Alignment explanation
Indices: 125780--125840 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 24
125770 ATATAATTTT
125780 ATTAATTAATTATAATTAT-AATA
1 ATTAATTAATTATAATTATAAATA
*
125803 ATTACATAATAATTATTATTATAAATA
1 ATTA-AT--TAATTATAATTATAAATA
*
125830 A-TAATTTATTA
1 ATTAATTAATTA
125841 GCTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
23 9 0.28
24 2 0.06
25 2 0.06
26 14 0.44
27 5 0.16
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTAATTAATTATAATTATAAATA
Found at i:126305 original size:27 final size:26
Alignment explanation
Indices: 126275--126339 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
126265 TATAACTAAG
*
126275 AATTATAATATAATGTAAATT-TATATT
1 AATTATAATATAA-AT-AATTGTATATT
126302 AATTATTAA-ATAAATAATTGTATATT
1 AATTA-TAATATAAATAATTGTATATT
*
126328 AATT-TATTATAA
1 AATTATAATATAA
126340 GTTAATTACA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
24 2 0.06
25 8 0.24
26 11 0.33
27 9 0.27
28 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (26 bp):
AATTATAATATAAATAATTGTATATT
Found at i:126345 original size:26 final size:24
Alignment explanation
Indices: 126283--126346 Score: 58
Period size: 26 Copynumber: 2.5 Consensus size: 24
126273 AGAATTATAA
*
126283 TATAATGTAAATTTATATTAATTAT
1 TATAA-GTTAATTTATATTAATTAT
*
126308 TAAATAA-ATAATTGTATATTAATTTAT
1 T--ATAAGTTAATT-TATATTAA-TTAT
126335 TATAAGTTAATT
1 TATAAGTTAATT
126347 ACAATAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
25 9 0.29
26 13 0.42
27 9 0.29
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (24 bp):
TATAAGTTAATTTATATTAATTAT
Found at i:126534 original size:20 final size:20
Alignment explanation
Indices: 126518--126555 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
126508 AATTAATATT
126518 TATTATTAATT-ATTAATAAC
1 TATT-TTAATTCATTAATAAC
126538 TATTTTAATTCATTAATA
1 TATTTTAATTCATTAATA
126556 CTAATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTTTAATTCATTAATAAC
Found at i:126563 original size:26 final size:26
Alignment explanation
Indices: 126515--126572 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
126505 TATAATTAAT
*
126515 ATTT-ATT-ATTAATTATTAATAACTA
1 ATTTAATTCATTAATTACTAATAAC-A
*
126540 TTTTAATTCATTAA-TACTAATAACA
1 ATTTAATTCATTAATTACTAATAACA
126565 ATTTAATT
1 ATTTAATT
126573 AGTATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 11 0.39
26 12 0.43
27 5 0.18
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTTAATTCATTAATTACTAATAACA
Found at i:126698 original size:17 final size:17
Alignment explanation
Indices: 126678--126719 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
126668 TATGAATCAT
126678 AATAATTA-TTTATTTTA
1 AATAATTATTTTA-TTTA
126695 AAT-ATTATTTTATTTA
1 AATAATTATTTTATTTA
126711 AATTAATTA
1 AA-TAATTA
126720 ATAATTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 10 0.45
17 8 0.36
18 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AATAATTATTTTATTTA
Found at i:126819 original size:22 final size:22
Alignment explanation
Indices: 126791--126834 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
126781 AATTATATGA
126791 AATTTTAATAATTAA-ATTAAAT
1 AATTTTAAT-ATTAATATTAAAT
*
126813 AATTTTAATTTTAATATTAAAT
1 AATTTTAATATTAATATTAAAT
126835 TATTAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATTTTAATATTAATATTAAAT
Found at i:126835 original size:13 final size:14
Alignment explanation
Indices: 126790--126840 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 14
126780 TAATTATATG
126790 AAATTTTAATAATT
1 AAATTTTAATAATT
*
126804 AAA-TTAAATAATTT
1 AAATTTTAATAA-TT
*
126818 TAATTTTAAT-ATT
1 AAATTTTAATAATT
126831 AAATTATTAA
1 AAATT-TTAA
126841 AATGATTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 13 0.43
14 12 0.40
15 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
AAATTTTAATAATT
Found at i:126916 original size:14 final size:15
Alignment explanation
Indices: 126892--126920 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
126882 TAATAACTAT
126892 ATATCATAATAAAAA
1 ATATCATAATAAAAA
126907 ATAT-ATAATAAAAA
1 ATATCATAATAAAAA
126921 TTAATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATCATAATAAAAA
Found at i:127444 original size:19 final size:18
Alignment explanation
Indices: 127422--127463 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
127412 TATTATGAGT
127422 ATAATTTAAAT-TAATATTA
1 ATAA-TTAAATCTAA-ATTA
127441 ATAATTAAATCCTAAATTA
1 ATAATTAAAT-CTAAATTA
127460 ATAA
1 ATAA
127464 GACATGAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.29
19 12 0.57
20 3 0.14
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATTAAATCTAAATTA
Found at i:127680 original size:17 final size:17
Alignment explanation
Indices: 127646--127683 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
127636 ATATAGTATT
*
127646 ATTATATTATTATTTAA
1 ATTATATTATTATATAA
127663 ATTATATTATT-TGATAA
1 ATTATATTATTAT-ATAA
127680 ATTA
1 ATTA
127684 AATAATTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTATATTATTATATAA
Found at i:128065 original size:38 final size:37
Alignment explanation
Indices: 128018--128152 Score: 94
Period size: 38 Copynumber: 3.8 Consensus size: 37
128008 ATATTTTATT
128018 ATTTA-ATTATAATATAAATA-AATAATTAACTATATAA
1 ATTTATATTATAATATAAATATAATAATTAACTA-AT-A
* * * *
128055 ATTTATATTATAA-ATTATTATAATAATTAATTAATT
1 ATTTATATTATAATATAAATATAATAATTAACTAATA
* * *
128091 ATTTATAGTATAATA-ATA-ATAATAA-T-ATTAATA
1 ATTTATATTATAATATAAATATAATAATTAACTAATA
128124 ATTTA-A-TA-AATATTAAATAATAAT-ATTAA
1 ATTTATATTATAATA-TAAAT-ATAATAATTAA
128153 TTGTTATATA
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
30 4 0.05
31 2 0.03
32 3 0.04
33 12 0.15
34 7 0.09
35 8 0.10
36 12 0.15
37 13 0.16
38 18 0.23
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (37 bp):
ATTTATATTATAATATAAATATAATAATTAACTAATA
Found at i:128130 original size:26 final size:25
Alignment explanation
Indices: 128073--128145 Score: 58
Period size: 26 Copynumber: 2.8 Consensus size: 25
128063 TATAAATTAT
* *
128073 TATAATAATTAATTAATTAT-TTATAG
1 TATAATAA-T-ATTAATAATATTATAA
*
128099 TATAATAATAATAATAATATTAATAA
1 TATAATAATATTAATAATATT-ATAA
*
128125 TTTAATAAATATTAAATAATA
1 TATAAT-AATATT-AATAATA
128146 ATATTAATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 7 0.18
25 3 0.08
26 16 0.42
27 5 0.13
28 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (25 bp):
TATAATAATATTAATAATATTATAA
Found at i:128146 original size:31 final size:32
Alignment explanation
Indices: 128063--128153 Score: 98
Period size: 31 Copynumber: 2.8 Consensus size: 32
128053 AAATTTATAT
* *
128063 TATAAATTATTATAATAATTA-ATTAATTATTTA
1 TATAAA-TATTA-AATAATAATATTAATAATTTA
*
128096 TAGTATAATAAT-AATAATAATATTAATAATTTA
1 TA-TA-AATATTAAATAATAATATTAATAATTTA
128129 -ATAAATATTAAATAATAATATTAAT
1 TATAAATATTAAATAATAATATTAAT
128154 TGTTATATAA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
30 5 0.10
31 17 0.34
32 8 0.16
33 13 0.26
34 5 0.10
35 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (32 bp):
TATAAATATTAAATAATAATATTAATAATTTA
Found at i:128627 original size:27 final size:27
Alignment explanation
Indices: 128591--128645 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
128581 AATTAATAGA
128591 AATATCATATAAATAATTAATATATTT
1 AATATCATATAAATAATTAATATATTT
* * * * *
128618 AATATTATATGACTATTTATTATATTT
1 AATATCATATAAATAATTAATATATTT
128645 A
1 A
128646 TTAATTTAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (27 bp):
AATATCATATAAATAATTAATATATTT
Found at i:128797 original size:10 final size:10
Alignment explanation
Indices: 128760--128806 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
128750 AATTAGTAAA
*
128760 ATAATAAATT
1 ATAATTAATT
*
128770 AT-ATTTATT
1 ATAATTAATT
*
128779 -TAATCAATT
1 ATAATTAATT
128788 ATAATTAATT
1 ATAATTAATT
128798 ATAATTAAT
1 ATAATTAAT
128807 AAAATATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
8 1 0.03
9 10 0.33
10 19 0.63
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (10 bp):
ATAATTAATT
Found at i:129110 original size:50 final size:51
Alignment explanation
Indices: 129050--129161 Score: 117
Period size: 50 Copynumber: 2.2 Consensus size: 51
129040 ATAATAACTA
* *
129050 ATAATT-TATTAAGAATATTA-CATTATA-TTATAAATATTAATTATTATT-T
1 ATAATTATATTAAGAATATTAGAATAATATTTAT-AATATTAATTA-TATTAT
* *
129099 ATAATTATATT-AGATTATTAGAATAATATTTATAGTATTAATTATATTAT
1 ATAATTATATTAAGAATATTAGAATAATATTTATAATATTAATTATATTAT
*
129149 ATATTTATTATTA
1 ATAATTA-TATTA
129162 TATTATTTGA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
49 18 0.35
50 26 0.50
51 8 0.15
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (51 bp):
ATAATTATATTAAGAATATTAGAATAATATTTATAATATTAATTATATTAT
Found at i:129158 original size:16 final size:17
Alignment explanation
Indices: 129065--129159 Score: 58
Period size: 16 Copynumber: 5.6 Consensus size: 17
129055 TTATTAAGAA
*
129065 TATTACATTATATTATAAA
1 TATTA-ATTATATTAT-AG
129084 TATTAATTATTATT-TA-
1 TATTAATTA-TATTATAG
*
129100 TAATTATATTAGATTATTAG
1 T-ATTA-ATTATATTA-TAG
*
129120 -AATAA-TAT-TTATAG
1 TATTAATTATATTATAG
129134 TATTAATTATATTATA-
1 TATTAATTATATTATAG
*
129150 TATTTATTAT
1 TATTAATTAT
129160 TATATTATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 21
0.70 0.06 0.24
Matches are distributed among these distances:
14 3 0.05
15 7 0.11
16 15 0.24
17 14 0.23
18 12 0.19
19 11 0.18
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTAATTATATTATAG
Found at i:129560 original size:12 final size:12
Alignment explanation
Indices: 129543--129567 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
129533 ATCTATTCAT
129543 ATTTAAATAATA
1 ATTTAAATAATA
129555 ATTTAAATAATA
1 ATTTAAATAATA
129567 A
1 A
129568 AACAATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTTAAATAATA
Found at i:129706 original size:28 final size:28
Alignment explanation
Indices: 129653--129709 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
129643 TTTTAGGTTT
* *
129653 TATTTAATTAATTGTTAATTAAATATTA
1 TATTTAATTAATTGATAAATAAATATTA
*
129681 TATTTATTTAATT-ATAAAT-AATA-TA
1 TATTTAATTAATTGATAAATAAATATTA
129706 TATT
1 TATT
129710 ATTCAATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 6 0.23
26 4 0.15
27 4 0.15
28 12 0.46
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
TATTTAATTAATTGATAAATAAATATTA
Found at i:129858 original size:17 final size:18
Alignment explanation
Indices: 129828--129864 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
129818 AATGTTTCAC
129828 AATATTTAACTAATATTA
1 AATATTTAACTAATATTA
*
129846 AATA-TTAAGTAATATTA
1 AATATTTAACTAATATTA
129863 AA
1 AA
129865 CAATATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
AATATTTAACTAATATTA
Found at i:129935 original size:26 final size:26
Alignment explanation
Indices: 129906--129962 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
129896 TATAATTAAT
*
129906 ATTATTAGAAAAT-TTAAATATATTTA
1 ATTATTA-AAAATATTAAATACATTTA
* *
129932 ATTATTAAATATATTAATTACATTTA
1 ATTATTAAAAATATTAAATACATTTA
129958 ATTAT
1 ATTAT
129963 AATAAAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (26 bp):
ATTATTAAAAATATTAAATACATTTA
Found at i:129941 original size:17 final size:16
Alignment explanation
Indices: 129919--129951 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
129909 ATTAGAAAAT
129919 TTAAATATATTTAATTA
1 TTAAATATA-TTAATTA
129936 TTAAATATATTAATTA
1 TTAAATATATTAATTA
129952 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAATATATTAATTA
Found at i:130037 original size:15 final size:15
Alignment explanation
Indices: 130014--130048 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
130004 ATTTAATTAA
*
130014 ATATAATATTTATAT
1 ATATTATATTTATAT
*
130029 TTATTATATTTATAT
1 ATATTATATTTATAT
130044 ATATT
1 ATATT
130049 TTAATAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTATATTTATAT
Found at i:130126 original size:28 final size:29
Alignment explanation
Indices: 130057--130129 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
130047 TTTTAATAAT
*
130057 TAATATT-TTAAATATTAATTATATTATA
1 TAATATTATTAAATATTAAATATATTATA
**
130085 T-ATAAAATTAAATAGTTAAATA-ATTATA
1 TAATATTATTAAATA-TTAAATATATTATA
130113 TAATATTATTAATATAT
1 TAATATTATTAA-ATAT
130130 GTTCTAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
27 3 0.08
28 15 0.42
29 15 0.42
30 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (29 bp):
TAATATTATTAAATATTAAATATATTATA
Found at i:130140 original size:20 final size:18
Alignment explanation
Indices: 130117--130165 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
130107 ATTATATAAT
130117 ATTATTAATATATGTTCTAA
1 ATTATTAATATAT-TT-TAA
130137 ATTATTAAT-TATTTTAA
1 ATTATTAATATATTTTAA
*
130154 AATATTTAATAT
1 ATTA-TTAATAT
130166 TTAAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.23
18 7 0.27
19 4 0.15
20 9 0.35
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTATTAATATATTTTAA
Found at i:130154 original size:17 final size:17
Alignment explanation
Indices: 130117--130172 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
130107 ATTATATAAT
130117 ATTATTAATATATGTTCTAA
1 ATTATTAAT-TAT-TT-TAA
130137 ATTATTAATTATTTTAA
1 ATTATTAATTATTTTAA
* *
130154 AATATTTAA-TATTTAAA
1 ATTA-TTAATTATTTTAA
130171 AT
1 AT
130173 ATATCATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 14 0.44
18 6 0.19
19 3 0.09
20 9 0.28
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTATTAATTATTTTAA
Found at i:130170 original size:16 final size:16
Alignment explanation
Indices: 130149--130189 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
130139 TATTAATTAT
*
130149 TTTAAAATATTTAATA
1 TTTAAAATATATAATA
*
130165 TTTAAAATATATCATA
1 TTTAAAATATATAATA
*
130181 ATTAAAATA
1 TTTAAAATA
130190 GAGATTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTAAAATATATAATA
Found at i:130412 original size:16 final size:16
Alignment explanation
Indices: 130391--130435 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 16
130381 ATTATTATTA
130391 TTATTAATATTATAAT
1 TTATTAATATTATAAT
130407 TTATT-A-ATTA-AAT
1 TTATTAATATTATAAT
*
130420 TTATTATTAGTTATAA
1 TTATTAATA-TTATAA
130436 GCAATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
13 8 0.33
14 4 0.17
15 2 0.08
16 8 0.33
17 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
TTATTAATATTATAAT
Found at i:130586 original size:23 final size:22
Alignment explanation
Indices: 130560--130651 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 22
130550 TATTGATTTA
130560 AATTATATAATTTAATAATATAT
1 AATTATATAATTTAATAATAT-T
130583 AATTGTATATAA-TT-ATAATATAT
1 AA-T-TATATAATTTAATAATAT-T
*
130606 AATTAAATAATATTAAT-A-ATT
1 AATTATATAAT-TTAATAATATT
* *
130627 AATAATATAATATAATAATATT
1 AATTATATAATTTAATAATATT
130649 AAT
1 AAT
130652 ATTAATGATA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
20 4 0.07
21 17 0.29
22 9 0.16
23 16 0.28
24 5 0.09
25 7 0.12
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (22 bp):
AATTATATAATTTAATAATATT
Found at i:130606 original size:13 final size:13
Alignment explanation
Indices: 130563--130657 Score: 57
Period size: 13 Copynumber: 7.6 Consensus size: 13
130553 TGATTTAAAT
130563 TATATAATTTAATAA
1 TATATAA-TT-ATAA
*
130578 TATATAA-T-T-G
1 TATATAATTATAA
130588 TATATAATTATAA
1 TATATAATTATAA
130601 TATATAATTA-AA
1 TATATAATTATAA
130613 TA-AT-ATTAATAA
1 TATATAATT-ATAA
130625 T-TAATAA-TATAA
1 TAT-ATAATTATAA
130637 TATAATAA-TATTAA
1 TAT-ATAATTA-TAA
130651 TAT-TAAT
1 TATATAAT
130658 GATATTTAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 24
0.72 0.02 0.26
Matches are distributed among these distances:
10 10 0.15
11 5 0.07
12 16 0.24
13 22 0.33
14 7 0.10
15 7 0.10
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (13 bp):
TATATAATTATAA
Found at i:130673 original size:35 final size:35
Alignment explanation
Indices: 130591--130684 Score: 85
Period size: 35 Copynumber: 2.8 Consensus size: 35
130581 ATAATTGTAT
*
130591 ATAATTATAATAT-ATAAT--TAA-A-TAATATTA
1 ATAATTATAATATAATAATAACAATATTAATATTA
*
130621 ATAATTAATAATATAAT-ATAATAATATTAATATTA
1 ATAATT-ATAATATAATAATAACAATATTAATATTA
*
130656 ATGATATT-TAATTTAATAATAACAATATT
1 AT-A-ATTATAATATAATAATAACAATATT
130685 TTAATATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
30 6 0.11
31 9 0.17
32 2 0.04
33 3 0.06
34 1 0.02
35 18 0.34
36 11 0.21
37 3 0.06
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (35 bp):
ATAATTATAATATAATAATAACAATATTAATATTA
Found at i:130973 original size:16 final size:15
Alignment explanation
Indices: 130919--130964 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
130909 TAGATAATAA
*
130919 TATTAATTATAAATAT
1 TATTAA-TATAAATTT
*
130935 TATAAATATAAATTT
1 TATTAATATAAATTT
130950 TATTAATATAAATTT
1 TATTAATATAAATTT
130965 GGTTTAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.81
16 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATATAAATTT
Found at i:131033 original size:18 final size:19
Alignment explanation
Indices: 130998--131035 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
130988 ATAAATAATT
* *
130998 ACTTATAATTAGTTTATTA
1 ACTTATAATAAGTATATTA
131017 ACTTAT-ATAAGTATATTA
1 ACTTATAATAAGTATATTA
131035 A
1 A
131036 TAATTCCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
ACTTATAATAAGTATATTA
Found at i:131744 original size:60 final size:57
Alignment explanation
Indices: 131616--131834 Score: 289
Period size: 59 Copynumber: 3.8 Consensus size: 57
131606 TCTTGTGTAG
* *
131616 AGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 AGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTA-TTTTAA
*
131673 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAATTTTATTCTTAA
1 AGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT-GAAA-TTTATT-TTAA
* * *
131733 AGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTGAAAATGTATTTCTAA
1 AGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTG-AAATTTATTT-TAA
* *
131792 GGAAAATTGATGCTTTCAACTTTTCC-CTAAAAATATTTTTTTT
1 AGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT
131835 TGGAAAATTT
Statistics
Matches: 144, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
57 33 0.23
58 8 0.06
59 52 0.36
60 51 0.35
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (57 bp):
AGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTATTTTAA
Found at i:131808 original size:59 final size:59
Alignment explanation
Indices: 131617--131849 Score: 303
Period size: 60 Copynumber: 3.9 Consensus size: 59
131607 CTTGTGTAGA
* * *
131617 GAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCTAAG
* *
131674 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAATTTTA-TTCTTAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT-GAAAATTTATTTC-TAAG
* * *
131734 GAAAATTGATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTGAAAATGTATTTCTAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCTAAG
*
131793 GAAAATTGATGCTTTCAACTTTTCC-CTAAAAATATTTTTTTTTGGAAAATTTGATTT
1 GAAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTTT-GAAAATTT-ATTT
131850 TTATTTGAAG
Statistics
Matches: 153, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
57 33 0.22
58 1 0.01
59 48 0.31
60 60 0.39
61 7 0.05
62 4 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCTAAG
Found at i:131825 original size:119 final size:117
Alignment explanation
Indices: 131616--131834 Score: 350
Period size: 119 Copynumber: 1.9 Consensus size: 117
131606 TCTTGTGTAG
* * *
131616 AGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
1 AGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATGTATTTCTAAGGAAAATT
131681 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAATTTTATTCTTAA
66 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAATTTTATTCTTAA
* *
131733 AGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTGAAAATGTATTTCTAAGGAAAA
1 AGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTGAAAATGTATTTCTAAGGAAAA
*
131798 TTGATGCTTTCAACTTTTCC-CTAAAAATATTTTTTTT
64 TTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT
131835 TGGAAAATTT
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
117 32 0.34
118 1 0.01
119 60 0.65
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (117 bp):
AGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATGTATTTCTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTCGAAATTTTATTCTTAA
Found at i:131892 original size:20 final size:21
Alignment explanation
Indices: 131861--131900 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
131851 TATTTGAAGA
131861 AAATAGAATAATAAAAAATAT
1 AAATAGAATAATAAAAAATAT
131882 AAATA-AATAATAAAAAATA
1 AAATAGAATAATAAAAAATA
131901 AAGAAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (21 bp):
AAATAGAATAATAAAAAATAT
Found at i:131907 original size:11 final size:10
Alignment explanation
Indices: 131867--131931 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 10
131857 AAGAAAATAG
*
131867 AATAATAAAA
1 AATAAAAAAA
* *
131877 AATATAAATA
1 AATAAAAAAA
*
131887 AATAATAAAA
1 AATAAAAAAA
*
131897 AATAAAGAAA
1 AATAAAAAAA
*
131907 AGTAAAACAAA
1 AATAAAA-AAA
131918 AATAAAAATAA
1 AATAAAAA-AA
131929 AAT
1 AAT
131932 TAAGATAAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 28 0.67
11 14 0.33
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (10 bp):
AATAAAAAAA
Done.