Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 104 of 106
Found at i:22036674 original size:33 final size:34
Alignment explanation
Indices: 22036614--22036705 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 34
22036604 TTAGTATTTC
* *
22036614 AATAATAAATAGTATTATATTATTATTTTAATA-ATA
1 AATAAT-AATA-TATTA-AATAATATTTTAATATATA
* * *
22036650 AATAATAATATATTAAATAATATTTTATTATTTT
1 AATAATAATATATTAAATAATATTTTAATATATA
*
22036684 AATAATTA-ATATTAAATAATAT
1 AATAATAATATATTAAATAATAT
22036706 AATTATTATT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
33 26 0.53
34 13 0.27
35 4 0.08
36 6 0.12
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (34 bp):
AATAATAATATATTAAATAATATTTTAATATATA
Found at i:22036687 original size:38 final size:37
Alignment explanation
Indices: 22036645--22036771 Score: 108
Period size: 38 Copynumber: 3.5 Consensus size: 37
22036635 ATTATTTTAA
22036645 TAATAAATAATAATATATTAAATAATATTTTATTATTT
1 TAAT-AATAATAATATATTAAATAATATTTTATTATTT
*
22036683 TAATAAT--T-A-ATATTAAATAATATAATTATTATTT
1 TAATAATAATAATATATTAAATAATAT-TTTATTATTT
* * *
22036717 TCATAA-AATGAATATTTTAAATAAT-TTCTTAATACTTT
1 TAATAATAAT-AATATATTAAATAATATT-TTATTA-TTT
*
22036755 TAAT-TTAA-AATATATTA
1 TAATAATAATAATATATTA
22036772 CTTTTATATT
Statistics
Matches: 72, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
33 14 0.19
34 15 0.21
35 2 0.03
36 8 0.11
37 10 0.14
38 23 0.32
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (37 bp):
TAATAATAATAATATATTAAATAATATTTTATTATTT
Found at i:22037112 original size:27 final size:29
Alignment explanation
Indices: 22037077--22037144 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 29
22037067 TATTAAAATA
22037077 TAAT-TATTTTTTAAT-ATAAA-AATTTT
1 TAATATATTTTTTAATCATAAATAATTTT
22037103 TAATATA--TTTTAATCATAAATAATTTT
1 TAATATATTTTTTAATCATAAATAATTTT
22037130 T--TATATTTTATTAAT
1 TAATATATTTT-TTAAT
22037145 TATATCAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
25 11 0.31
26 9 0.25
27 11 0.31
28 5 0.14
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (29 bp):
TAATATATTTTTTAATCATAAATAATTTT
Found at i:22043997 original size:14 final size:14
Alignment explanation
Indices: 22043978--22044004 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22043968 TGTTTCACGA
22043978 AAAATGATTTTCGG
1 AAAATGATTTTCGG
22043992 AAAATGATTTTCG
1 AAAATGATTTTCG
22044005 CATTTTCAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (14 bp):
AAAATGATTTTCGG
Found at i:22044248 original size:18 final size:18
Alignment explanation
Indices: 22044161--22044340 Score: 87
Period size: 18 Copynumber: 10.1 Consensus size: 18
22044151 AGCATAATTT
*
22044161 TATTTATAAATAATATTA
1 TATTAATAAATAATATTA
*
22044179 TATTAATAAATAA-ATAA
1 TATTAATAAATAATATTA
*
22044196 TATTATATTAATAA-A-TA
1 TATTA-ATAAATAATATTA
* * * *
22044213 -A-TATTAAATTACAGTA
1 TATTAATAAATAATATTA
22044229 TATTAATAAATAATATTA
1 TATTAATAAATAATATTA
* *
22044247 TATGAATAAACAATA-TA
1 TATTAATAAATAATATTA
22044264 CTATTAAT--ATAATA-TA
1 -TATTAATAAATAATATTA
*
22044280 CA--AATAAA-AATATTAA
1 TATTAATAAATAATATT-A
*
22044296 TAAATAATATACTATTAATATAATA
1 T-ATTAATA-A--A-TAATAT--TA
22044321 TATTAATAAATAATATTA
1 TATTAATAAATAATATTA
22044339 TA
1 TA
22044341 ATTTATTAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 40
0.68 0.10 0.22
Matches are distributed among these distances:
13 3 0.02
14 9 0.07
15 6 0.05
16 11 0.09
17 13 0.10
18 54 0.44
19 4 0.03
20 7 0.06
21 1 0.01
22 1 0.01
23 1 0.01
24 11 0.09
25 2 0.02
26 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (18 bp):
TATTAATAAATAATATTA
Found at i:22044255 original size:46 final size:45
Alignment explanation
Indices: 22044187--22044340 Score: 163
Period size: 46 Copynumber: 3.4 Consensus size: 45
22044177 TATATTAATA
*
22044187 AATAAATAATATTATATTAATAAATAATATTAAAT-TACAGTATATT
1 AATAAATAATATTATATAAATAAATAATATTAAATATA-A-TATATT
* * **
22044233 AATAAATAATATTATATGAATAAACAATATACTATTAATATAATATACA
1 AATAAATAATATTATATAAATAAATAATAT--TA--AATATAATATATT
*
22044282 AATAAA-AATATTA-ATAAATAATATACTATT-AATATAATATATT
1 AATAAATAATATTATATAAATAA-ATAATATTAAATATAATATATT
22044325 AATAAATAATATTATA
1 AATAAATAATATTATA
22044341 ATTTATTAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 17
0.78 0.08 0.15
Matches are distributed among these distances:
43 17 0.19
44 7 0.08
45 1 0.01
46 29 0.32
47 7 0.08
48 14 0.15
49 10 0.11
50 4 0.04
51 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (45 bp):
AATAAATAATATTATATAAATAAATAATATTAAATATAATATATT
Found at i:22044279 original size:16 final size:16
Alignment explanation
Indices: 22044258--22044336 Score: 80
Period size: 16 Copynumber: 5.3 Consensus size: 16
22044248 ATGAATAAAC
*
22044258 AATATACTATTAATAT
1 AATATACTAATAATAT
*
22044274 AATATACAAATAA-A-
1 AATATACTAATAATAT
22044288 AATAT--TAATAA-AT
1 AATATACTAATAATAT
*
22044301 AATATACTATTAATAT
1 AATATACTAATAATAT
*
22044317 AATATATTAATAA-AT
1 AATATACTAATAATAT
22044332 AATAT
1 AATAT
22044337 TATAATTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
12 6 0.11
13 5 0.09
14 5 0.09
15 13 0.25
16 24 0.45
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATACTAATAATAT
Found at i:22044299 original size:12 final size:13
Alignment explanation
Indices: 22044161--22044359 Score: 96
Period size: 13 Copynumber: 15.2 Consensus size: 13
22044151 AGCATAATTT
*
22044161 TATTTATAAATAA
1 TATTAATAAATAA
*
22044174 TATTATATTAATAA
1 TATTA-ATAAATAA
* *
22044188 -ATAAATAATATTA
1 TATTAATAA-ATAA
22044201 TATTAATAAATAA
1 TATTAATAAATAA
*
22044214 TATTAAATTACAGT-A
1 TATT-AA-TA-AATAA
22044229 TATTAATAAATAA
1 TATTAATAAATAA
*
22044242 TATTATATGAATAA
1 TATTA-ATAAATAA
* *
22044256 -A-CAAT--ATAC
1 TATTAATAAATAA
22044265 TATTAATATAAT-A
1 TATTAATA-AATAA
**
22044278 TACAAATAAA-AA
1 TATTAATAAATAA
22044290 TATTAATAAATAA
1 TATTAATAAATAA
*
22044303 TATACTATTAATATAATA
1 TAT--TAATAA-AT-A-A
22044321 TATTAATAAATAA
1 TATTAATAAATAA
*
22044334 TATT-AT-AAT-T
1 TATTAATAAATAA
*
22044344 TATTAATAATTAA
1 TATTAATAAATAA
22044357 TAT
1 TAT
22044360 AAAGAATAAC
Statistics
Matches: 140, Mismatches: 23, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
9 3 0.02
10 5 0.04
11 10 0.07
12 21 0.15
13 45 0.32
14 28 0.20
15 14 0.10
16 9 0.06
17 1 0.01
18 4 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (13 bp):
TATTAATAAATAA
Found at i:22044305 original size:43 final size:44
Alignment explanation
Indices: 22044236--22044338 Score: 145
Period size: 43 Copynumber: 2.3 Consensus size: 44
22044226 GTATATTAAT
* *
22044236 AAATAATATTATATGAATAAACAATATACTATTAATATAATATAC
1 AAATAA-ATAATATTAATAAACAATATACTATTAATATAATATAC
* *
22044281 AAATAAA-AATATTAATAAATAATATACTATTAATATAATATAT
1 AAATAAATAATATTAATAAACAATATACTATTAATATAATATAC
*
22044324 TAATAAATAATATTA
1 AAATAAATAATATTA
22044339 TAATTTATTA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
43 38 0.73
44 8 0.15
45 6 0.12
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (44 bp):
AAATAAATAATATTAATAAACAATATACTATTAATATAATATAC
Found at i:22044327 original size:31 final size:28
Alignment explanation
Indices: 22044182--22044358 Score: 119
Period size: 28 Copynumber: 5.9 Consensus size: 28
22044172 AATATTATAT
* *
22044182 TAATAAATAAATAATATTATATTAATAAA
1 TAATATATAAAT-ATAATATATTAATAAA
22044211 TAATAT-TAAAT-TACAGTATATTAATAAA
1 TAATATATAAATATA-A-TATATTAATAAA
* * *
22044239 TAATATTATATGAATAAACAATATACTATTAATA
1 TAATA-TATA--AAT--ATAATATATTAATAA-A
* *
22044273 TAATATACAAATA-AAAATATTAATAAA
1 TAATATATAAATATAATATATTAATAAA
22044300 TAATATACTATTAATATAATATATTAATAAA
1 TAATATA-TA--AATATAATATATTAATAAA
*
22044331 TAATATTATAATTTATTAATA-ATTAATA
1 TAATA-TATAA-ATA-TAATATATTAATA
22044359 TAAAGAATAA
Statistics
Matches: 119, Mismatches: 12, Indels: 33
0.73 0.07 0.20
Matches are distributed among these distances:
26 2 0.02
27 8 0.07
28 33 0.28
29 8 0.07
30 15 0.13
31 28 0.24
32 5 0.04
33 12 0.10
34 7 0.06
35 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (28 bp):
TAATATATAAATATAATATATTAATAAA
Found at i:22044349 original size:23 final size:23
Alignment explanation
Indices: 22044161--22044248 Score: 74
Period size: 22 Copynumber: 3.9 Consensus size: 23
22044151 AGCATAATTT
* *
22044161 TATTTATAAATAATATTATATTA
1 TATTAATAAATAATATTATAATA
* *
22044184 -ATAAATAAATAATATTATATTA
1 TATTAATAAATAATATTATAATA
* * *
22044206 -ATAAATAATATTAA-ATTACAGTA
1 TATTAATAA-A-TAATATTATAATA
22044229 TATTAATAAATAATATTATA
1 TATTAATAAATAATATTATA
22044249 TGAATAAACA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
22 31 0.56
23 14 0.25
24 10 0.18
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (23 bp):
TATTAATAAATAATATTATAATA
Found at i:22044356 original size:43 final size:43
Alignment explanation
Indices: 22044161--22044361 Score: 139
Period size: 43 Copynumber: 4.7 Consensus size: 43
22044151 AGCATAATTT
* * **
22044161 TATTTATAAATAATATTATATTAATA-AATA-A-ATAAT-ATTA
1 TATTAATAAATAATATAATATTAATATAATATACA-AATAAAAA
* * *
22044201 TATTAATAAATAATATTAA-ATTACAGTATATTA-ATAAATAATATTA
1 TATTAATAAATAATA-TAATATTA-A-TATAATATACAAATAA-A-AA
* * *
22044247 TATGAATAAACAATATACTATTAATATAATATACAAATAAAAA
1 TATTAATAAATAATATAATATTAATATAATATACAAATAAAAA
* **
22044290 TATTAATAAATAATATACTATTAATATAATATATTAATAAATAA
1 TATTAATAAATAATATAATATTAATATAATATACAAATAAA-AA
* *
22044334 TATT-ATAATTTAT-TAATAATTAATATAA
1 TATTAATAAATAATATAAT-ATTAATATAA
22044362 AGAATAACAA
Statistics
Matches: 132, Mismatches: 17, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
40 18 0.14
41 3 0.02
42 5 0.04
43 62 0.47
44 15 0.11
45 10 0.08
46 19 0.14
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (43 bp):
TATTAATAAATAATATAATATTAATATAATATACAAATAAAAA
Found at i:22044356 original size:61 final size:59
Alignment explanation
Indices: 22044199--22044358 Score: 146
Period size: 61 Copynumber: 2.6 Consensus size: 59
22044189 TAAATAATAT
* *
22044199 TATATTAATAAATAATATTAAATTACAGTATATTAATAAATAATATTATATGAATAAACAA
1 TATATTAATAAATAATATTAAATTAAAATA-ATTAATAAATAATATTATATGAAT-AACAA
* * * * * *
22044260 TATACTATTAATATAATATACAAATAAAAAT-ATTAATAAATAATA-TACTATTAAT-ATAA
1 TATATTAATAA-ATAATAT-TAAATTAAAATAATTAATAAATAATATTA-TATGAATAACAA
*
22044319 TATATTAATAAATAATATTATAATTTATTAATAATTAATA
1 TATATTAATAAATAATATTA-AA-TTA-AAATAATTAATA
22044359 TAAAGAATAA
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
57 1 0.01
58 9 0.11
59 14 0.18
60 5 0.06
61 36 0.46
62 7 0.09
63 7 0.09
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (59 bp):
TATATTAATAAATAATATTAAATTAAAATAATTAATAAATAATATTATATGAATAACAA
Found at i:22044411 original size:18 final size:17
Alignment explanation
Indices: 22044388--22044436 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
22044378 TTATTTTAAG
22044388 TATTTTATATTAATATAA
1 TATTTTATATTAA-ATAA
*
22044406 TATTTTAATATTAAATAT
1 TATTTT-ATATTAAATAA
*
22044424 TATTAT-TATTAAA
1 TATTTTATATTAAA
22044437 ATATAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 7 0.25
18 14 0.50
19 7 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTTTATATTAAATAA
Found at i:22044440 original size:17 final size:16
Alignment explanation
Indices: 22044404--22044458 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
22044394 ATATTAATAT
*
22044404 AATATT-TTAATATTA
1 AATATTATTATTATTA
22044419 AATATTATTATTATTAA
1 AATATTATTATTATT-A
* * *
22044436 AATATAATTATTTTTT
1 AATATTATTATTATTA
22044452 AATATTA
1 AATATTA
22044459 ATAATTTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
15 6 0.18
16 13 0.39
17 14 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AATATTATTATTATTA
Found at i:22044466 original size:16 final size:15
Alignment explanation
Indices: 22044448--22044513 Score: 70
Period size: 16 Copynumber: 4.6 Consensus size: 15
22044438 TATAATTATT
*
22044448 TTTTAATATTAATAA
1 TTTTAATATAAATAA
22044463 TTTTAATAATAAATAA
1 TTTTAAT-ATAAATAA
22044479 TTTT-A-AT--AT-A
1 TTTTAATATAAATAA
22044489 TTTTAATAATAAATAA
1 TTTTAAT-ATAAATAA
22044505 TTTTAATAT
1 TTTTAATAT
22044514 TTTAATAGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
10 5 0.12
11 3 0.07
13 4 0.09
15 12 0.28
16 19 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTTAATATAAATAA
Found at i:22044482 original size:33 final size:31
Alignment explanation
Indices: 22044419--22044508 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 31
22044409 TTTAATATTA
*
22044419 AATATTATTATTATTAA-AATATAATTATTTTTT
1 AATATTA-TATT-TTAATAATA-AATAATTTTTT
22044452 AATATTAATAATTTTAATAATAAATAA--TTTT
1 AATATT-AT-ATTTTAATAATAAATAATTTTTT
22044483 -A-A-TATATTTTAATAATAAATAATTTT
1 AATATTATATTTTAATAATAAATAATTTT
22044509 AATATTTTAA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
26 17 0.33
27 2 0.04
28 3 0.06
29 1 0.02
30 1 0.02
31 4 0.08
33 15 0.29
34 8 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (31 bp):
AATATTATATTTTAATAATAAATAATTTTTT
Found at i:22044491 original size:10 final size:9
Alignment explanation
Indices: 22044451--22044520 Score: 69
Period size: 9 Copynumber: 8.2 Consensus size: 9
22044441 AATTATTTTT
*
22044451 TAATATTAA
1 TAATTTTAA
22044460 TAATTTTAA
1 TAATTTTAA
*
22044469 TAA--TAAA
1 TAATTTTAA
22044476 TAATTTTAA
1 TAATTTTAA
22044485 TATATTTTAA
1 TA-ATTTTAA
*
22044495 TAA--TAAA
1 TAATTTTAA
22044502 TAATTTTAA
1 TAATTTTAA
22044511 T-ATTTTAA
1 TAATTTTAA
22044519 TA
1 TA
22044521 GTTATATTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
7 12 0.24
8 8 0.16
9 21 0.42
10 9 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
TAATTTTAA
Found at i:22044491 original size:26 final size:26
Alignment explanation
Indices: 22044451--22044520 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
22044441 AATTATTTTT
*
22044451 TAATATTAATA-ATTTTAATAATAAA
1 TAATTTTAATATATTTTAATAATAAA
22044476 TAATTTTAATATATTTTAATAATAAA
1 TAATTTTAATATATTTTAATAATAAA
22044502 TAATTTT-A-ATATTTTAATA
1 TAATTTTAATATATTTTAATA
22044521 GTTATATTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
24 11 0.26
25 11 0.26
26 21 0.49
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
TAATTTTAATATATTTTAATAATAAA
Found at i:22047873 original size:17 final size:18
Alignment explanation
Indices: 22047851--22047887 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
22047841 CATCCTGATA
22047851 ATTTATTTTTATA-TTAT
1 ATTTATTTTTATATTTAT
22047868 ATTTATTTTTATATTTAT
1 ATTTATTTTTATATTTAT
22047886 AT
1 AT
22047888 CCAACGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTATTTTTATATTTAT
Found at i:22056641 original size:9 final size:9
Alignment explanation
Indices: 22056627--22056660 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
22056617 TTATTTAATT
22056627 TAAAAAAAA
1 TAAAAAAAA
22056636 TAAAAAGAAA
1 TAAAAA-AAA
*
22056646 TATAAAAAA
1 TAAAAAAAA
22056655 TAAAAA
1 TAAAAA
22056661 TGAAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:22056675 original size:20 final size:19
Alignment explanation
Indices: 22056630--22056692 Score: 72
Period size: 19 Copynumber: 3.2 Consensus size: 19
22056620 TTTAATTTAA
22056630 AAAAAATAAAAAGAAATAT
1 AAAAAATAAAAAGAAATAT
22056649 AAAAAATAAAAATGAAATAT
1 AAAAAATAAAAA-GAAATAT
** * *
22056669 ATTAAATAAGACGAAATAT
1 AAAAAATAAAAAGAAATAT
22056688 GAAAA
1 -AAAA
22056693 GAAAAATAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
19 19 0.53
20 17 0.47
ACGTcount: A:0.71, C:0.02, G:0.08, T:0.19
Consensus pattern (19 bp):
AAAAAATAAAAAGAAATAT
Found at i:22056999 original size:17 final size:18
Alignment explanation
Indices: 22056955--22057004 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
22056945 TTATTTTAAG
*
22056955 TTATATTCAAATAAATTT
1 TTATATTTAAATAAATTT
*
22056973 TTA-ATATAAAT-AATTT
1 TTATATTTAAATAAATTT
22056989 TTATATTTAAAATAAA
1 TTATATTT-AAATAAA
22057005 AATTTATTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 7 0.27
19 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TTATATTTAAATAAATTT
Found at i:22058741 original size:27 final size:27
Alignment explanation
Indices: 22058701--22058758 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
22058691 TCCTCTTAAA
*
22058701 TTTTGATAAAGAGATTATTGAAGGTAT
1 TTTTGATAAAGAGATTATTGAAGATAT
*
22058728 TTTTGATAAGGAGATTATTGAAGATAT
1 TTTTGATAAAGAGATTATTGAAGATAT
22058755 TTTT
1 TTTT
22058759 TTAGCTGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (27 bp):
TTTTGATAAAGAGATTATTGAAGATAT
Found at i:22062606 original size:9 final size:8
Alignment explanation
Indices: 22062570--22062606 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
22062560 ACAAATTATG
*
22062570 TATTTAGA
1 TATTTAAA
22062578 TATTTAAA
1 TATTTAAA
22062586 TATTTAAA
1 TATTTAAA
22062594 TATTTATAA
1 TATTTA-AA
22062603 TATT
1 TATT
22062607 CAGTTTATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 21 0.78
9 6 0.22
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (8 bp):
TATTTAAA
Found at i:22062897 original size:32 final size:32
Alignment explanation
Indices: 22062828--22062915 Score: 95
Period size: 32 Copynumber: 2.8 Consensus size: 32
22062818 TTTAACGACG
* ** * * *
22062828 TTTTTAAATACAAATATCACTAAATTAATGGT
1 TTTTTTAATACAAACGTCACTAAAGTAACGAT
*
22062860 GTTTTTAATACAAACGTCACTAAAGTAACGAT
1 TTTTTTAATACAAACGTCACTAAAGTAACGAT
* *
22062892 TTTTTTTATAAAAACGTCACTAAA
1 TTTTTTAATACAAACGTCACTAAA
22062916 TTAGTGGCGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (32 bp):
TTTTTTAATACAAACGTCACTAAAGTAACGAT
Found at i:22062971 original size:34 final size:34
Alignment explanation
Indices: 22062933--22063064 Score: 140
Period size: 34 Copynumber: 3.9 Consensus size: 34
22062923 CGTCTTAAAA
* * * * *
22062933 ATACAAATGTCGCTAAAATAACGACATTTTTTAG
1 ATACAAATATCGCTAATATAATGATATTTTTCAG
* * *
22062967 ATACAAATATCACTAATATAGTGATATTTTTCAT
1 ATACAAATATCGCTAATATAATGATATTTTTCAG
*
22063001 ATACAAATATCGTTAATATAATGATATTTTTCAG
1 ATACAAATATCGCTAATATAATGATATTTTTCAG
* * * *
22063035 ATACAAACATTG-TTATATAACGATATTTTT
1 ATACAAATATCGCTAATATAATGATATTTTT
22063065 TAAAAAACAT
Statistics
Matches: 82, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
33 16 0.20
34 66 0.80
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.39
Consensus pattern (34 bp):
ATACAAATATCGCTAATATAATGATATTTTTCAG
Found at i:22063603 original size:13 final size:12
Alignment explanation
Indices: 22063576--22063620 Score: 65
Period size: 13 Copynumber: 3.8 Consensus size: 12
22063566 ATTAAATTTA
*
22063576 ATAATTTAAAAT
1 ATAATATAAAAT
22063588 ATAATATAATAAT
1 ATAATATAA-AAT
22063601 ATAATATAAAA-
1 ATAATATAAAAT
22063612 ATAATATAA
1 ATAATATAA
22063621 TTTAAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 9 0.29
12 10 0.32
13 12 0.39
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:22063616 original size:16 final size:16
Alignment explanation
Indices: 22063585--22063627 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
22063575 AATAATTTAA
22063585 AATATAATATAATAATAT
1 AATATAA-A-AATAATAT
22063603 AATATAAAAATAATAT
1 AATATAAAAATAATAT
*
22063619 AATTTAAAA
1 AATATAAAA
22063628 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 16 0.67
17 1 0.04
18 7 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAAAATAATAT
Found at i:22072687 original size:24 final size:24
Alignment explanation
Indices: 22072643--22072688 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
22072633 CTTTTCTTAT
*
22072643 AATTTTTAAAAAATATTATATATA
1 AATTTTTAAAAAATATAATATATA
*
22072667 AATTTATTAATAAATA-AATATA
1 AATTT-TTAAAAAATATAATATA
22072689 ATTTGGTGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AATTTTTAAAAAATATAATATATA
Found at i:22073059 original size:27 final size:24
Alignment explanation
Indices: 22072993--22073099 Score: 87
Period size: 23 Copynumber: 4.4 Consensus size: 24
22072983 ATATATTTAG
22072993 TAAATATATTTTTATTAAATAATA
1 TAAATATATTTTTATTAAATAATA
*
22073017 TAAAT-TATTATT-TTAAATTAAT-
1 TAAATATATTTTTATTAAA-TAATA
*
22073039 TAGAATTAATATTTTTATTAAAAAATA
1 TA-AA-T-ATATTTTTATTAAATAATA
* * *
22073066 TATTAATATATATTTA-TAAAAAATC
1 TA--AATATATTTTTATTAAATAATA
22073091 TAAATATAT
1 TAAATATAT
22073100 AATATAAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
22 7 0.10
23 19 0.28
24 6 0.09
25 10 0.14
26 17 0.25
27 8 0.12
28 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (24 bp):
TAAATATATTTTTATTAAATAATA
Found at i:22073070 original size:24 final size:25
Alignment explanation
Indices: 22073043--22073109 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
22073033 ATTAATTAGA
22073043 ATTAATAT-T-TTTATTAAAAAATAT
1 ATTAATATATATTTA-TAAAAAATAT
*
22073067 ATTAATATATATTTATAAAAAATCT
1 ATTAATATATATTTATAAAAAATAT
*
22073092 A--AATATATA-ATATAAAAA
1 ATTAATATATATTTATAAAAA
22073110 TAAAAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 11 0.28
26 4 0.10
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTAATATATATTTATAAAAAATAT
Found at i:22084875 original size:4 final size:4
Alignment explanation
Indices: 22084855--22084927 Score: 58
Period size: 4 Copynumber: 18.5 Consensus size: 4
22084845 GGAGTGATAT
* * * * * *
22084855 ATAC ATA- ATAT ATAC ATAC ATAC ATAC ATAC ATGC CTGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
22084902 ATAC GTAC GTAC ATCC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC AT
22084928 GCATGCATGC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
3 3 0.05
4 56 0.95
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:22084915 original size:32 final size:32
Alignment explanation
Indices: 22084869--22084940 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
22084859 ATAATATATA
* * *
22084869 CATACATACATACATACATGCCTGCATGCATG
1 CATACATACATACATACATACATACATGCATG
* * *
22084901 CATACGTACGTACATCCATACATACATGCATG
1 CATACATACATACATACATACATACATGCATG
*
22084933 CATGCATA
1 CATACATA
22084941 TATATATGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (32 bp):
CATACATACATACATACATACATACATGCATG
Found at i:22084921 original size:36 final size:36
Alignment explanation
Indices: 22084866--22084940 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
22084856 TACATAATAT
* *
22084866 ATACATACATACATACATACATGCCTGCATGCATGC
1 ATACATACATACATACATACATACATGCATGCATGC
* * *
22084902 ATACGTACGTACATCCATACATACATGCATGCATGC
1 ATACATACATACATACATACATACATGCATGCATGC
22084938 ATA
1 ATA
22084941 TATATATGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (36 bp):
ATACATACATACATACATACATACATGCATGCATGC
Found at i:22098815 original size:8 final size:8
Alignment explanation
Indices: 22098804--22098829 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
22098794 AAGGAAAAAG
22098804 AGAAACCA
1 AGAAACCA
22098812 AGAAACCA
1 AGAAACCA
22098820 AGAAACCA
1 AGAAACCA
22098828 AG
1 AG
22098830 CTGCTTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.15, T:0.00
Consensus pattern (8 bp):
AGAAACCA
Found at i:22099665 original size:3 final size:3
Alignment explanation
Indices: 22099657--22099684 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
22099647 TCCAAAAAGT
22099657 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
22099685 GACTACATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:22105960 original size:13 final size:13
Alignment explanation
Indices: 22105942--22105971 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
22105932 GTAGAAATTG
22105942 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
22105955 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
22105968 -TTTT
1 ATTTT
22105972 ACTTCTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTTTAAAAAAT
Found at i:22106127 original size:26 final size:24
Alignment explanation
Indices: 22106079--22106145 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 24
22106069 TATTAATATG
22106079 ATTATTAAAATATTAAAAATATTT
1 ATTATTAAAATATTAAAAATATTT
* *
22106103 ATTATTAAAGTATATTGAAATTATTT
1 ATTATTAAA--ATATTAAAAATATTT
*
22106129 ATTCTTAAAATTATTAA
1 ATTATTAAAA-TATTAA
22106146 TATTTAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 10 0.28
25 5 0.14
26 21 0.58
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (24 bp):
ATTATTAAAATATTAAAAATATTT
Found at i:22106150 original size:22 final size:24
Alignment explanation
Indices: 22106063--22106151 Score: 71
Period size: 26 Copynumber: 3.8 Consensus size: 24
22106053 AAATTTTTTT
*
22106063 AAATAATATT-AATA-TGATTATTA
1 AAAT-ATATTAAATATTTATTATTA
*
22106086 AAATAT-TAAAAATATTTATTATTA
1 AAATATAT-TAAATATTTATTATTA
* *
22106110 AAGTATATTGAAATTATTTATTCTTA
1 AAATATATT-AAA-TATTTATTATTA
22106136 AAAT-TATT-AATATTTA
1 AAATATATTAAATATTTA
22106152 AGAAATTATA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
21 1 0.02
22 8 0.15
23 10 0.19
24 13 0.24
25 8 0.15
26 14 0.26
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (24 bp):
AAATATATTAAATATTTATTATTA
Found at i:22106535 original size:39 final size:38
Alignment explanation
Indices: 22106475--22106590 Score: 112
Period size: 42 Copynumber: 3.0 Consensus size: 38
22106465 ATTTATTAAA
*
22106475 AATATTCA-AATTAAGAA-AATAATAATATTAGTTTATTT
1 AATATTCATTATTAA-AATAATAATAATATTA-TTTATTT
*
22106513 AATATTCATTATTAAAATAATAAAAATATTATTATATATGTT
1 AATATTCATTATTAAAATAATAATAATATTA-T-T-TAT-TT
* * *
22106555 AATATTTATTATAAAAATAAT-ATAATACTATTTATT
1 AATATTCATTATTAAAATAATAATAATATTATTTATT
22106591 ATTGAAATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
37 1 0.02
38 13 0.20
39 19 0.29
40 2 0.03
41 10 0.15
42 21 0.32
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (38 bp):
AATATTCATTATTAAAATAATAATAATATTATTTATTT
Found at i:22106844 original size:23 final size:22
Alignment explanation
Indices: 22106801--22106846 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
22106791 TAGAATTATA
22106801 AAAATATTTTAAATTAAAATATT
1 AAAATATTTTAAATT-AAATATT
22106824 AAAATACTTTTAATATT-AATATT
1 AAAATA-TTTTAA-ATTAAATATT
22106847 TTAAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 12 0.57
24 6 0.29
25 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AAAATATTTTAAATTAAATATT
Found at i:22110050 original size:28 final size:27
Alignment explanation
Indices: 22109997--22110050 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
22109987 CTGAGAGAAA
* * *
22109997 AAGGGAAAAAGAATAAAATAATAAAAG
1 AAGGGAAAAAGAAAAAAAAAAGAAAAG
22110024 AAGGAGAAAAAGAAAAAAAAAAGAAAA
1 AAGG-GAAAAAGAAAAAAAAAAGAAAA
22110051 AATAGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.06
Consensus pattern (27 bp):
AAGGGAAAAAGAAAAAAAAAAGAAAAG
Found at i:22115146 original size:10 final size:10
Alignment explanation
Indices: 22115131--22115155 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22115121 AAAGAGTTAC
22115131 AAAAAAAATG
1 AAAAAAAATG
22115141 AAAAAAAATG
1 AAAAAAAATG
22115151 AAAAA
1 AAAAA
22115156 TGAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAAAATG
Found at i:22116070 original size:52 final size:52
Alignment explanation
Indices: 22115990--22116095 Score: 158
Period size: 52 Copynumber: 2.0 Consensus size: 52
22115980 TAACCTAAAG
* * * *
22115990 ATTACCCTTTAGTTTAAGTGATTATGTTTAATATGACAAATTGCCATCTTTT
1 ATTACCCTTTAGCTTAAGTGATTATGTTTAACATGACAAATAGCCATATTTT
* *
22116042 ATTACTCTTTAGCTTAAGTGATTGTGTTTAACATGACAAATAGCCATATTTT
1 ATTACCCTTTAGCTTAAGTGATTATGTTTAACATGACAAATAGCCATATTTT
22116094 AT
1 AT
22116096 CATCCTTTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (52 bp):
ATTACCCTTTAGCTTAAGTGATTATGTTTAACATGACAAATAGCCATATTTT
Found at i:22116360 original size:19 final size:19
Alignment explanation
Indices: 22116336--22116393 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
22116326 CGAAAGAATG
22116336 AGAAAATAAGAAATGAAAA
1 AGAAAATAAGAAATGAAAA
*
22116355 AGAAAATAA-AAAAGAACAAA
1 AGAAAATAAGAAATG-A-AAA
*
22116375 AGAATATAAGGAAAT-AAAA
1 AGAAAATAA-GAAATGAAAA
22116394 GGGAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
18 4 0.12
19 13 0.41
20 12 0.38
22 3 0.09
ACGTcount: A:0.74, C:0.02, G:0.14, T:0.10
Consensus pattern (19 bp):
AGAAAATAAGAAATGAAAA
Found at i:22118707 original size:38 final size:36
Alignment explanation
Indices: 22118665--22118746 Score: 85
Period size: 36 Copynumber: 2.2 Consensus size: 36
22118655 CATAAAAATA
22118665 AGAAATTTACCCTTTCAAGACATCCT-AGCATCAAGATG
1 AGAAATTTACCC-TT-AAGACAT-CTAAGCATCAAGATG
* * * * *
22118703 AGAAAGTTATCCTTAAGACCTTTAAGCATCAAGATT
1 AGAAATTTACCCTTAAGACATCTAAGCATCAAGATG
22118739 AGAAATTT
1 AGAAATTT
22118747 GTTACTAGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
35 1 0.03
36 24 0.65
37 2 0.05
38 10 0.27
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (36 bp):
AGAAATTTACCCTTAAGACATCTAAGCATCAAGATG
Found at i:22119628 original size:46 final size:46
Alignment explanation
Indices: 22119555--22119663 Score: 130
Period size: 46 Copynumber: 2.4 Consensus size: 46
22119545 TATAGGTTCA
* **
22119555 TTTTTAAAGTTATGAAATCTCTGATGAGATA-AGTTTTTAAATCTAT
1 TTTTTAAAGTTATGGAGCCTCTGATGAGA-AGAGTTTTTAAATCTAT
* * *
22119601 TTTTTCAAGTTATGGAGCCTCTTATGAGAAGAGTTTTTAAATTTAT
1 TTTTTAAAGTTATGGAGCCTCTGATGAGAAGAGTTTTTAAATCTAT
**
22119647 TTTCAAAAGTTATGGAG
1 TTTTTAAAGTTATGGAG
22119664 TTTTTAATGA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 1 0.02
46 52 0.98
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (46 bp):
TTTTTAAAGTTATGGAGCCTCTGATGAGAAGAGTTTTTAAATCTAT
Found at i:22119750 original size:24 final size:24
Alignment explanation
Indices: 22119685--22119770 Score: 63
Period size: 24 Copynumber: 3.7 Consensus size: 24
22119675 AGGAGTTTTT
*
22119685 CAAAAATTAA-AAAAAAAAAAAAA
1 CAAAAATTAAGAAAATAAAAAAAA
* * **
22119708 C-AAGA-CAA-AAAATCCAAAAAATT
1 CAAAAATTAAGAAAAT--AAAAAAAA
22119731 CAAAAATTAAGAAAATAAAAAAAA
1 CAAAAATTAAGAAAATAAAAAAAA
* *
22119755 CCAAAGTTAAGAAAAT
1 CAAAAATTAAGAAAAT
22119771 TTCAAAAAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 9
0.70 0.16 0.13
Matches are distributed among these distances:
21 6 0.13
22 3 0.06
23 8 0.17
24 23 0.49
25 2 0.04
26 5 0.11
ACGTcount: A:0.73, C:0.09, G:0.05, T:0.13
Consensus pattern (24 bp):
CAAAAATTAAGAAAATAAAAAAAA
Found at i:22119814 original size:9 final size:9
Alignment explanation
Indices: 22119802--22119862 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
22119792 AAAAGAAAGC
22119802 AAAAAATTT
1 AAAAAATTT
*
22119811 AAAAAAGTTC
1 AAAAAA-TTT
22119821 AAAAAATTCT
1 AAAAAATT-T
*
22119831 CAAAAAAATT
1 -AAAAAATTT
* *
22119841 AAAAAGTTC
1 AAAAAATTT
22119850 AAAAAA-TT
1 AAAAAATTT
22119858 AAAAA
1 AAAAA
22119863 CAAACTTTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
8 6 0.15
9 19 0.46
10 9 0.22
11 7 0.17
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (9 bp):
AAAAAATTT
Found at i:22121328 original size:15 final size:14
Alignment explanation
Indices: 22121308--22121337 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
22121298 TCATTTGACT
22121308 AAAAGAAAAAAGAAA
1 AAAAGAAAAAA-AAA
22121323 AAAAGAAAAAAAAA
1 AAAAGAAAAAAAAA
22121337 A
1 A
22121338 GAGAAAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAA
Found at i:22121331 original size:13 final size:14
Alignment explanation
Indices: 22121308--22121345 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
22121298 TCATTTGACT
*
22121308 AAAAGAAAAAAGAA
1 AAAAGAGAAAAGAA
22121322 AAAA-AGAAAA-AA
1 AAAAGAGAAAAGAA
22121334 AAAAGAGAAAAG
1 AAAAGAGAAAAG
22121346 GAAGAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 6 0.29
13 11 0.52
14 4 0.19
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAGAGAAAAGAA
Found at i:22121338 original size:26 final size:26
Alignment explanation
Indices: 22121308--22121359 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
22121298 TCATTTGACT
*
22121308 AAAAGAAAAAAGAAAAAAAGAAAAAA
1 AAAAGAAAAAAGAAAAAAACAAAAAA
* * *
22121334 AAAAGAGAAAAGGAAGAAACAAAAAA
1 AAAAGAAAAAAGAAAAAAACAAAAAA
22121360 GATGGGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (26 bp):
AAAAGAAAAAAGAAAAAAACAAAAAA
Found at i:22121371 original size:25 final size:22
Alignment explanation
Indices: 22121308--22121361 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
22121298 TCATTTGACT
22121308 AAAAGAAAAAAGA-AAAA--AAG
1 AAAA-AAAAAAGAGAAAAGGAAG
22121328 AAAAAAAAAAGAGAAAAGGAAG
1 AAAAAAAAAAGAGAAAAGGAAG
*
22121350 AAACAAAAAAGA
1 AAAAAAAAAAGA
22121362 TGGGAAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 8 0.27
20 8 0.27
22 14 0.47
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAGAGAAAAGGAAG
Found at i:22129013 original size:24 final size:23
Alignment explanation
Indices: 22128986--22129046 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
22128976 TTATATATCA
*
22128986 TATTATAATTAAATGATAAATATT
1 TATTATAA-TAAATGATAAATAAT
* * *
22129010 TATTTTAATAAATTTATTAATAAT
1 TATTATAATAAA-TGATAAATAAT
22129034 TATTATAATAAAT
1 TATTATAATAAAT
22129047 AATTTTTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 5 0.16
24 26 0.84
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TATTATAATAAATGATAAATAAT
Found at i:22133045 original size:7 final size:7
Alignment explanation
Indices: 22133033--22133063 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
22133023 AACTGGCATG
22133033 TTTGAAA
1 TTTGAAA
22133040 TTTGAAA
1 TTTGAAA
22133047 TTTGAAA
1 TTTGAAA
22133054 TTTGAAA
1 TTTGAAA
22133061 TTT
1 TTT
22133064 TGGCAATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (7 bp):
TTTGAAA
Found at i:22134621 original size:11 final size:11
Alignment explanation
Indices: 22134605--22134635 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
22134595 TAATGGTAAG
22134605 TATTTTCCATT
1 TATTTTCCATT
22134616 TATTTTCCATT
1 TATTTTCCATT
22134627 TATTTTCCA
1 TATTTTCCA
22134636 CATAACTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTCCATT
Found at i:22158645 original size:30 final size:30
Alignment explanation
Indices: 22158611--22158675 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
22158601 AATTTTTTAA
* * * *
22158611 ATTTTTAATTATATATATTTATATAATGAT
1 ATTTTTAAATATATATATTTAAAAAATAAT
*
22158641 ATTTTTAAATATGTATATTTAAAAAATAAT
1 ATTTTTAAATATATATATTTAAAAAATAAT
22158671 ATTTT
1 ATTTT
22158676 ATATTTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (30 bp):
ATTTTTAAATATATATATTTAAAAAATAAT
Found at i:22159999 original size:2 final size:2
Alignment explanation
Indices: 22159988--22160055 Score: 58
Period size: 2 Copynumber: 37.0 Consensus size: 2
22159978 AGCTAGAAAG
* ** *
22159988 AT AT -T AT AT AT AT A- AT -T A- AT AT AT AT GT AT AT AT GG AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22160026 AT -T AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22160056 CGAGATTCAC
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
1 6 0.11
2 48 0.89
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
AT
Found at i:22160406 original size:21 final size:21
Alignment explanation
Indices: 22160351--22160406 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
22160341 CATATAATCA
*
22160351 AATCAATCTCAATCTTATCTTT
1 AATC-ATCTCAATCTTATCTCT
*
22160373 AATGATC-CAAATCTTATCTCT
1 AATCATCTC-AATCTTATCTCT
22160394 AATCATCTCAATC
1 AATCATCTCAATC
22160407 CAAACATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.03
21 24 0.83
22 4 0.14
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATCATCTCAATCTTATCTCT
Found at i:22161175 original size:10 final size:10
Alignment explanation
Indices: 22161160--22161194 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
22161150 GGTCACTAGG
22161160 ATATAACTAT
1 ATATAACTAT
22161170 ATATAACTAT
1 ATATAACTAT
22161180 ATATATA-TAT
1 ATATA-ACTAT
22161190 ATATA
1 ATATA
22161195 TATGATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 23 0.96
11 1 0.04
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATAACTAT
Found at i:22163000 original size:3 final size:3
Alignment explanation
Indices: 22162994--22163032 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
22162984 TCTATAGGTA
22162994 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22163033 GAAAAAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22168012 original size:25 final size:25
Alignment explanation
Indices: 22167977--22168028 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
22167967 CGCTACACGT
* * *
22167977 GAGGTGTTCATGGTTCTACACTTGA
1 GAGGTGCTCATGATTCGACACTTGA
*
22168002 GAGGTGCTCATGATTCGAGACTTGA
1 GAGGTGCTCATGATTCGACACTTGA
22168027 GA
1 GA
22168029 AGGGACTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (25 bp):
GAGGTGCTCATGATTCGACACTTGA
Found at i:22170707 original size:50 final size:50
Alignment explanation
Indices: 22170632--22170731 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
22170622 AGGCTTGCCT
* *
22170632 TAAATTAAACATAGCTTCCAACAATTCTAGAGATTCTTTGATAGTCATAA
1 TAAATTAAACATAGCTTCCAACAATTATAGAGATTCTATGATAGTCATAA
*
22170682 TAAATTAGACATAGCTTCCAACAATTATAGAGATTCTATGATAGTCATAA
1 TAAATTAAACATAGCTTCCAACAATTATAGAGATTCTATGATAGTCATAA
22170732 ACAACTGCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (50 bp):
TAAATTAAACATAGCTTCCAACAATTATAGAGATTCTATGATAGTCATAA
Found at i:22171771 original size:225 final size:225
Alignment explanation
Indices: 22171223--22172121 Score: 1721
Period size: 224 Copynumber: 4.0 Consensus size: 225
22171213 ATGGGGTGTT
22171223 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
1 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
*
22171288 GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAAATTATATACTT
66 GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAAAATATATACTT
*
22171353 ATTTACTAACATAACTTATGCAAGAA-AAAAATAAATAAATATACATATTACATGACCAGACAAT
131 ATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAAT
22171417 AAAATCATTCACAAGCCTAACTAACAAATC
196 AAAATCATTCACAAGCCTAACTAACAAATC
22171447 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
1 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
22171512 GTATCTCCAAGATCTAGAGCATAAAAAGGTTCCTTTCTCACTCCTGATGAAAAAAAATATATACT
66 GTATCTCCAAGATCTAGAGCATAAAAA-GTTCCTTTCTCACTCCTGATGAAAAAAAATATATACT
22171577 TATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAA
130 TATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAA
*
22171642 TAAAATCATTCACAAACCTAACTAACAAATC
195 TAAAATCATTCACAAGCCTAACTAACAAATC
22171673 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
1 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
22171738 GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAAAA-ATATACTT
66 GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAAAATATATACTT
22171802 ATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAAT
131 ATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAAT
22171867 AAAATCATTCACAAGCCTAACTAACAAATC
196 AAAATCATTCACAAGCCTAACTAACAAATC
22171897 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
1 GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
*
22171962 GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAATATATATACTT
66 GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAAAATATATACTT
*
22172027 ATTTACTAACATACCTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAAT
131 ATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAAT
*
22172092 AAAATCATTCACAAGCCTAACTAACTAATC
196 AAAATCATTCACAAGCCTAACTAACAAATC
22172122 AACACAAAAG
Statistics
Matches: 665, Mismatches: 7, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
224 314 0.47
225 192 0.29
226 159 0.24
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (225 bp):
GCTCCACATCTGGATGCAAAGAGGATCTTTGACCTCCTAGTTCAACCCGTAAGACCCTAAAATTA
GTATCTCCAAGATCTAGAGCATAAAAAGTTCCTTTCTCACTCCTGATGAAAAAAAATATATACTT
ATTTACTAACATAACTAATGCAAGAAGAAAAATAAATAAATATACATATTACATGACCAGACAAT
AAAATCATTCACAAGCCTAACTAACAAATC
Found at i:22178992 original size:31 final size:35
Alignment explanation
Indices: 22178949--22179013 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 35
22178939 ATCCAACCTG
*
22178949 ATATTTATATTAAAAT-T-AT-TTTT-TTAATTTT
1 ATATTTACATTAAAATATAATATTTTATTAATTTT
22178980 ATATTTACATTAAAATATAATATTTTATTAATTT
1 ATATTTACATTAAAATATAATATTTTATTAATTT
22179014 CGAATTAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 15 0.52
32 1 0.03
33 2 0.07
34 4 0.14
35 7 0.24
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (35 bp):
ATATTTACATTAAAATATAATATTTTATTAATTTT
Found at i:22181301 original size:11 final size:11
Alignment explanation
Indices: 22181285--22181314 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22181275 TTAGACAAGG
*
22181285 TAAATTATTTT
1 TAAATTAATTT
22181296 TAAATTAATTT
1 TAAATTAATTT
22181307 TAAATTAA
1 TAAATTAA
22181315 GATGAGTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TAAATTAATTT
Found at i:22182136 original size:111 final size:111
Alignment explanation
Indices: 22181937--22182160 Score: 403
Period size: 111 Copynumber: 2.0 Consensus size: 111
22181927 AACTAATATT
*
22181937 AAATCTCAAAATAATTTCCACATAGCTTTGAATTCTCTGTCTTTCCTTTCTTTTTCGATAAGTGT
1 AAATCTCAAAATAATTTCCACATAGCTTTGAACTCTCTGTCTTTCCTTTCTTTTTCGATAAGTGT
22182002 CAATTTTGGTTAAATCGACAATAATTTTGTGGCGTAAAGGAAAGAA
66 CAATTTTGGTTAAATCGACAATAATTTTGTGGCGTAAAGGAAAGAA
* * *
22182048 AAATCTCGAAGTAATTTCCACGTAGCTTTGAACTCTCTGTCTTTCCTTTCTTTTTCGATAAGTGT
1 AAATCTCAAAATAATTTCCACATAGCTTTGAACTCTCTGTCTTTCCTTTCTTTTTCGATAAGTGT
*
22182113 CAATTTTGGTTAAATCGATAATAATTTTGTGGCGTAAAGGAAAGAA
66 CAATTTTGGTTAAATCGACAATAATTTTGTGGCGTAAAGGAAAGAA
22182159 AA
1 AA
22182161 GGTTGGAATT
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 108 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (111 bp):
AAATCTCAAAATAATTTCCACATAGCTTTGAACTCTCTGTCTTTCCTTTCTTTTTCGATAAGTGT
CAATTTTGGTTAAATCGACAATAATTTTGTGGCGTAAAGGAAAGAA
Found at i:22183106 original size:22 final size:23
Alignment explanation
Indices: 22183067--22183119 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
22183057 TCCATGTAAT
*
22183067 TATA-TTTATAATTGATATATAA
1 TATATTTTATAATTAATATATAA
*
22183089 TATATTTTAT-ATTAATATTTAA
1 TATATTTTATAATTAATATATAA
22183111 -ATAGTTTTA
1 TATA-TTTTA
22183120 AATATATTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 19 0.70
23 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (23 bp):
TATATTTTATAATTAATATATAA
Found at i:22184649 original size:24 final size:26
Alignment explanation
Indices: 22184622--22184674 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 26
22184612 TTCATATTAT
*
22184622 AAAAAGCATTTA-TTTATGT-TTTAA
1 AAAAAGAATTTATTTTATGTATTTAA
* *
22184646 AAAAATAATTTATTTTTTGTATTTAA
1 AAAAAGAATTTATTTTATGTATTTAA
22184672 AAA
1 AAA
22184675 TATACATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 10 0.42
25 6 0.25
26 8 0.33
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (26 bp):
AAAAAGAATTTATTTTATGTATTTAA
Found at i:22186312 original size:21 final size:21
Alignment explanation
Indices: 22186279--22186318 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22186269 TATTGAAACT
** *
22186279 TAAAATTTCATTTTGGAGATC
1 TAAAATTAAATTTTAGAGATC
22186300 TAAAATTAAATTTTAGAGA
1 TAAAATTAAATTTTAGAGA
22186319 GAGATGTACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.40
Consensus pattern (21 bp):
TAAAATTAAATTTTAGAGATC
Found at i:22189364 original size:5 final size:5
Alignment explanation
Indices: 22189356--22189498 Score: 87
Period size: 5 Copynumber: 27.2 Consensus size: 5
22189346 TTGTTACTGG
* * *
22189356 TATTA TATTA CTATAGTA TAGTA TATTA TATTA TAGTG TGATTA TATTA
1 TATTA TATTA -TAT--TA TATTA TATTA TATTA TATTA T-ATTA TATTA
*
22189405 TATTA TATTA TTATT- T-TTA TTATTA TAGTA TATTA TATTA GTA-TA
1 TATTA TATTA -TATTA TATTA -TATTA TATTA TATTA TATTA -TATTA
* * * *
22189450 GTATAA TATTA TAATA TAATA TAATA TAATTA T-TTA TTATTA TTATTA
1 -TATTA TATTA TATTA TATTA TATTA T-ATTA TATTA -TATTA -TATTA
22189498 T
1 T
22189499 TTGTTTTTAT
Statistics
Matches: 113, Mismatches: 12, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
3 2 0.02
4 4 0.04
5 74 0.65
6 29 0.26
7 2 0.02
8 2 0.02
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.55
Consensus pattern (5 bp):
TATTA
Found at i:22189427 original size:12 final size:13
Alignment explanation
Indices: 22189400--22189495 Score: 72
Period size: 13 Copynumber: 7.5 Consensus size: 13
22189390 AGTGTGATTA
22189400 TATTATATTATAT
1 TATTATATTATAT
*
22189413 TATTAT-TTTTAT
1 TATTATATTATAT
*
22189425 TATTATAGTATAT
1 TATTATATTATAT
* *
22189438 TA-TATTAGTATAG
1 TATTA-TATTATAT
* *
22189451 TATAATATTATAA
1 TATTATATTATAT
* *
22189464 TATAATATAATAT
1 TATTATATTATAT
*
22189477 AATTAT-TTATTAT
1 TATTATATTA-TAT
22189490 TATTAT
1 TATTAT
22189496 TATTTGTTTT
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
12 15 0.23
13 50 0.76
14 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:22189449 original size:18 final size:18
Alignment explanation
Indices: 22189359--22189454 Score: 81
Period size: 18 Copynumber: 5.2 Consensus size: 18
22189349 TTACTGGTAT
22189359 TATATTACTA-TAGTATAG
1 TATATTA-TATTAGTATAG
* *
22189377 TATATTATATTATAGTGTGAT
1 TATATTATA-T-TAGTAT-AG
*
22189398 TATATTATATTA-TATTAT
1 TATATTATATTAGTA-TAG
* *
22189416 TAT-TTTTATTATTATAG
1 TATATTATATTAGTATAG
22189433 TATATTATATTAGTATAG
1 TATATTATATTAGTATAG
22189451 TATA
1 TATA
22189455 ATATTATAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
17 14 0.22
18 31 0.48
19 3 0.05
20 6 0.09
21 10 0.16
ACGTcount: A:0.36, C:0.01, G:0.08, T:0.54
Consensus pattern (18 bp):
TATATTATATTAGTATAG
Found at i:22189467 original size:18 final size:19
Alignment explanation
Indices: 22189421--22189481 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 19
22189411 ATTATTATTT
* *
22189421 TTATTATTATAGTATATTA
1 TTATTAATATAGTATAATA
*
22189440 -TATTAGTATAGTATAATA
1 TTATTAATATAGTATAATA
*
22189458 TTA-TAATATAATATAATA
1 TTATTAATATAGTATAATA
*
22189476 TAATTA
1 TTATTA
22189482 TTTATTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 31 0.89
19 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTATTAATATAGTATAATA
Found at i:22189989 original size:10 final size:10
Alignment explanation
Indices: 22189960--22189992 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
22189950 GGAATTTAAA
22189960 TTTTGAAAAT
1 TTTTGAAAAT
*
22189970 TTCT-AAAAT
1 TTTTGAAAAT
22189979 TTTTGAAAAT
1 TTTTGAAAAT
22189989 TTTT
1 TTTT
22189993 TGGAAAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (10 bp):
TTTTGAAAAT
Found at i:22193045 original size:144 final size:144
Alignment explanation
Indices: 22192914--22193182 Score: 321
Period size: 144 Copynumber: 1.9 Consensus size: 144
22192904 ATTATTTTTG
* * *
22192914 AGGTGCAATAAAAAATTTTAATGTATAAAAATTCATGGAGTAATATCAAAGGATGATCTAAAGCT
1 AGGTGCAATAAAAAATTTTAATGCATAAAAATTCATGGAATAATATCAAAGCATGATCTAAAGC-
* *
22192979 TTTTACG-AAAAATC-AATC-TAAAAAAAGTCAAATTATA-AAAATATCCTTAAAGGGCATTTTG
65 TTTT-CGTAAAAAACTAATCTTAAAAAAA-TCAAA-TAAAGAAAATATCCTTAAAGGGCATTTTG
*
22193040 ATAATTTTACTATTTCAA
127 ATAATTTCACTATTTCAA
* *** * * **
22193058 AGGTGCAATCAAGGCTTTTAATGCATAAAAATTCATGGAATAATATTAAAGCTTGATCTGGAGCT
1 AGGTGCAATAAAAAATTTTAATGCATAAAAATTCATGGAATAATATCAAAGCATGATCTAAAGCT
* * *
22193123 TTTCGTAAAAAACTAATCTTGAGATAATCAAATAAAGAAAATATCCTTAAAGGGCATTTT
66 TTTCGTAAAAAACTAATCTTAAAAAAATCAAATAAAGAAAATATCCTTAAAGGGCATTTT
22193183 ACCCTCATGA
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
142 2 0.02
143 13 0.12
144 85 0.81
145 5 0.05
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (144 bp):
AGGTGCAATAAAAAATTTTAATGCATAAAAATTCATGGAATAATATCAAAGCATGATCTAAAGCT
TTTCGTAAAAAACTAATCTTAAAAAAATCAAATAAAGAAAATATCCTTAAAGGGCATTTTGATAA
TTTCACTATTTCAA
Found at i:22198805 original size:60 final size:60
Alignment explanation
Indices: 22198731--22198849 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 60
22198721 TGTAATTGAT
* * * * *
22198731 TAATTATTTGTTTATATTTTCGTTGGCTTGATTGTTTAATT-AGATTAAAACTTTTTAGCC
1 TAATTATTTATTTATACTTTCGCTAGCTTGATTATTTAATTGA-ATTAAAACTTTTTAGCC
* *
22198791 TAATTATTTATTTATACTTTCGCTAGTTTGATTATTTAATTGAATTGAAACTTTTTAGC
1 TAATTATTTATTTATACTTTCGCTAGCTTGATTATTTAATTGAATTAAAACTTTTTAGC
22198850 TTAACAACTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 50 0.98
61 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.53
Consensus pattern (60 bp):
TAATTATTTATTTATACTTTCGCTAGCTTGATTATTTAATTGAATTAAAACTTTTTAGCC
Found at i:22198894 original size:2 final size:2
Alignment explanation
Indices: 22198887--22198916 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22198877 AACTTTTATC
22198887 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22198917 AGCCCAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22200219 original size:16 final size:16
Alignment explanation
Indices: 22200188--22200228 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
22200178 ACTATTAATC
*
22200188 TTAATATTTA-TATAT
1 TTAATAATTATTATAT
22200203 TCTAA-AATTATTATAT
1 T-TAATAATTATTATAT
22200219 TTAATAATTA
1 TTAATAATTA
22200229 AAATGGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TTAATAATTATTATAT
Found at i:22201080 original size:22 final size:24
Alignment explanation
Indices: 22201047--22201090 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
22201037 TGATTTTTTT
22201047 TTTTTTTGAAAA-GATAATGTTGA
1 TTTTTTTGAAAAGGATAATGTTGA
22201070 TTTTTTT-AAAAGGATAATGTT
1 TTTTTTTGAAAAGGATAATGTT
22201091 TTGTATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (24 bp):
TTTTTTTGAAAAGGATAATGTTGA
Found at i:22201292 original size:2 final size:2
Alignment explanation
Indices: 22201280--22201310 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
22201270 AACTTACTTT
22201280 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22201311 AGGTACTCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22203285 original size:12 final size:12
Alignment explanation
Indices: 22203268--22203312 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
22203258 TTTTTTTAAA
22203268 TATATTAAAAAT
1 TATATTAAAAAT
22203280 TATATT-AAAAT
1 TATATTAAAAAT
*
22203291 AATATATAAAAAT
1 TATAT-TAAAAAT
*
22203304 TAAATTAAA
1 TATATTAAA
22203313 TTTAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 9 0.32
12 11 0.39
13 8 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TATATTAAAAAT
Found at i:22203305 original size:24 final size:25
Alignment explanation
Indices: 22203266--22203344 Score: 79
Period size: 24 Copynumber: 3.1 Consensus size: 25
22203256 ATTTTTTTTA
*
22203266 AATATATTAAAAATTATATTAAAAT
1 AATATATTAAAAATTAAATTAAAAT
*
22203291 AATATA-TAAAAATTAAATTAAATTT
1 AATATATTAAAAATTAAATTAAA-AT
* * * *
22203316 AAAAAATTAATGAATTAAATTAAACT
1 AATATATTAA-AAATTAAATTAAAAT
22203342 AAT
1 AAT
22203345 TAAATTCAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
24 15 0.34
25 11 0.25
26 6 0.14
27 12 0.27
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (25 bp):
AATATATTAAAAATTAAATTAAAAT
Found at i:22203307 original size:19 final size:19
Alignment explanation
Indices: 22203283--22203325 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
22203273 TAAAAATTAT
22203283 ATTAAAAT-AATATATAAAA
1 ATTAAAATAAATATA-AAAA
* *
22203302 ATTAAATTAAATTTAAAAA
1 ATTAAAATAAATATAAAAA
22203321 ATTAA
1 ATTAA
22203326 TGAATTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAAAATAAATATAAAAA
Found at i:22203310 original size:5 final size:5
Alignment explanation
Indices: 22203300--22203369 Score: 51
Period size: 5 Copynumber: 14.6 Consensus size: 5
22203290 TAATATATAA
* *
22203300 AAATT AAATT AAATTT AAA-- AAATT -AA-T GAATT AAATT AAACT -AATT
1 AAATT AAATT AAA-TT AAATT AAATT AAATT AAATT AAATT AAATT AAATT
* *
22203346 AAATT CAAATT TAATT AACTT AAA
1 AAATT -AAATT AAATT AAATT AAA
22203370 AAATCAATTC
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
3 4 0.08
4 7 0.14
5 30 0.59
6 10 0.20
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.37
Consensus pattern (5 bp):
AAATT
Found at i:22204123 original size:23 final size:25
Alignment explanation
Indices: 22204085--22204130 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
22204075 AAAACTTATA
*
22204085 AAAAAATATGATAAAATGATATAAT
1 AAAAAATATGATAAAATAATATAAT
22204110 AAAAAATAT-A-AAAATAATATA
1 AAAAAATATGATAAAATAATATA
22204131 TTTTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 1 0.05
25 9 0.45
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (25 bp):
AAAAAATATGATAAAATAATATAAT
Found at i:22204152 original size:12 final size:11
Alignment explanation
Indices: 22204135--22204173 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
22204125 AATATATTTT
22204135 AAAATTTTAATA
1 AAAATTTT-ATA
22204147 AAAATTTTATA
1 AAAATTTTATA
* *
22204158 TAAATTTGATA
1 AAAATTTTATA
22204169 AAAAT
1 AAAAT
22204174 AAAAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 16 0.67
12 8 0.33
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (11 bp):
AAAATTTTATA
Found at i:22204247 original size:16 final size:17
Alignment explanation
Indices: 22204226--22204270 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
22204216 GATAATTTTT
* *
22204226 ATATTATATATAT-TAA
1 ATATTAAATAAATATAA
22204242 ATATTAAATAAATATAA
1 ATATTAAATAAATATAA
22204259 ATATATAAATAA
1 ATAT-TAAATAA
22204271 TCAGATTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.44
17 7 0.28
18 7 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATTAAATAAATATAA
Found at i:22205847 original size:13 final size:13
Alignment explanation
Indices: 22205829--22205868 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
22205819 ATCGGTATCA
22205829 ATTATTTTAATAT
1 ATTATTTTAATAT
*
22205842 ATTATTTTAAAAT
1 ATTATTTTAATAT
* *
22205855 TTTAATTTAATAT
1 ATTATTTTAATAT
22205868 A
1 A
22205869 AATATATTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTATTTTAATAT
Found at i:22205884 original size:18 final size:18
Alignment explanation
Indices: 22205863--22205898 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
22205853 ATTTTAATTT
22205863 AATATAAAT-ATATTTATA
1 AATATAAATGA-ATTTATA
22205881 AATATAAATGAATTTATA
1 AATATAAATGAATTTATA
22205899 CATTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
AATATAAATGAATTTATA
Found at i:22206400 original size:10 final size:10
Alignment explanation
Indices: 22206385--22206426 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
22206375 GTTATTCTAG
22206385 TGAAATTAAT
1 TGAAATTAAT
22206395 TGAAATTAAT
1 TGAAATTAAT
* *
22206405 CGAAACTAA-
1 TGAAATTAAT
*
22206414 TGAAAATAAT
1 TGAAATTAAT
22206424 TGA
1 TGA
22206427 TATTTTTCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 7 0.26
10 20 0.74
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (10 bp):
TGAAATTAAT
Found at i:22206940 original size:22 final size:23
Alignment explanation
Indices: 22206915--22206959 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
22206905 AGGATGATAT
22206915 TATGCAATATAATCATA-TCATA
1 TATGCAATATAATCATATTCATA
*
22206937 TATGTAATATAATCATATTCATA
1 TATGCAATATAATCATATTCATA
22206960 ATATTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.40
Consensus pattern (23 bp):
TATGCAATATAATCATATTCATA
Found at i:22220025 original size:129 final size:129
Alignment explanation
Indices: 22219765--22220014 Score: 392
Period size: 129 Copynumber: 1.9 Consensus size: 129
22219755 AAGTGCTTCT
* * * *
22219765 GTTGAGCTTCCAACCAAAGAATCACTACCTTTTTCACCCTTTAATATGAATCCCTTCTTACCTCC
1 GTTGAGCTTACAACCAAAGAATCACTACCTTTTCCACCCTTAAATATGAATCCCTTCTTAACTCC
* *
22219830 ATCATCAACATCCTTACTGCCTTTAATATTCAACTTGGTCAGCAACTCATTCGGAAATGCATCC
66 ATCATCAACATCCTTACTGCCTCTAATATTCAACTTGCTCAGCAACTCATTCGGAAATGCATCC
* * *
22219894 GTTGAGCTTACAACCATAGAATCACTACCTTTTCCGCTCTTAAATATGAATCCCTTCTTAACTCC
1 GTTGAGCTTACAACCAAAGAATCACTACCTTTTCCACCCTTAAATATGAATCCCTTCTTAACTCC
* * *
22219959 ATCATCAACATCGTTACTGCCTCTAATATTCAACTTGCTCGGCAACTCATTTGGAA
66 ATCATCAACATCCTTACTGCCTCTAATATTCAACTTGCTCAGCAACTCATTCGGAA
22220015 GTTTTTCCGT
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 109 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (129 bp):
GTTGAGCTTACAACCAAAGAATCACTACCTTTTCCACCCTTAAATATGAATCCCTTCTTAACTCC
ATCATCAACATCCTTACTGCCTCTAATATTCAACTTGCTCAGCAACTCATTCGGAAATGCATCC
Found at i:22221363 original size:23 final size:22
Alignment explanation
Indices: 22221320--22221363 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
22221310 CAATTTAATG
**
22221320 AAAAAATTTTAAAATTTAATTC
1 AAAAAATTTTAAAATCAAATTC
*
22221342 AAAAAATTTATATAATCAAATT
1 AAAAAATTT-TAAAATCAAATT
22221364 TTTAAAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAAATTTTAAAATCAAATTC
Found at i:22221675 original size:24 final size:24
Alignment explanation
Indices: 22221610--22221685 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
22221600 TAATTTTTTA
* **
22221610 TATATATTT-ATTTATTAATAAAA
1 TATATATTTAATATATTAATAATG
* *
22221633 TAATATTATTTAATTTATTGATAATG
1 T-ATA-TATTTAATATATTAATAATG
* *
22221659 TATATATTTTATATATTAATAGTG
1 TATATATTTAATATATTAATAATG
22221683 TAT
1 TAT
22221686 TAAATATAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
23 1 0.02
24 22 0.51
25 8 0.19
26 12 0.28
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (24 bp):
TATATATTTAATATATTAATAATG
Found at i:22225037 original size:51 final size:51
Alignment explanation
Indices: 22224967--22225072 Score: 167
Period size: 51 Copynumber: 2.1 Consensus size: 51
22224957 AGATTCCCAT
* *
22224967 TTTTTTAATCATCGACTGCATTAATATTGTAAGGTTTCCATATTCTTTTTC
1 TTTTTTAATCATCGACTGCATTAATATTGTAAAGTTCCCATATTCTTTTTC
* * *
22225018 TTTTTTAATCTTTGACTGCATTAATCTTGTAAAGTTCCCATATTCTTTTTC
1 TTTTTTAATCATCGACTGCATTAATATTGTAAAGTTCCCATATTCTTTTTC
22225069 TTTT
1 TTTT
22225073 CTTTTTTTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.22, C:0.16, G:0.08, T:0.54
Consensus pattern (51 bp):
TTTTTTAATCATCGACTGCATTAATATTGTAAAGTTCCCATATTCTTTTTC
Found at i:22228554 original size:17 final size:17
Alignment explanation
Indices: 22228532--22228565 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22228522 CTTTAGTTGG
22228532 TCGAACCTTGCTTCCTT
1 TCGAACCTTGCTTCCTT
22228549 TCGAACCTTGCTTCCTT
1 TCGAACCTTGCTTCCTT
22228566 GTTTTATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.12, T:0.41
Consensus pattern (17 bp):
TCGAACCTTGCTTCCTT
Found at i:22229137 original size:35 final size:35
Alignment explanation
Indices: 22229068--22229145 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 35
22229058 CATCACATGA
* *
22229068 ATATTTATATTGGCATGCATTCATATTTTGTTATT
1 ATATTTATATTAGCATGCATTCATATGTTGTTATT
*
22229103 -TATGTTATATTATCATGCATTCATCATGTT-TTATT
1 ATAT-TTATATTAGCATGCATTCAT-ATGTTGTTATT
22229138 ATATTTAT
1 ATATTTAT
22229146 GCATCTATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 3 0.08
35 27 0.73
36 7 0.19
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (35 bp):
ATATTTATATTAGCATGCATTCATATGTTGTTATT
Found at i:22229195 original size:16 final size:17
Alignment explanation
Indices: 22229159--22229197 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
22229149 TCTATTTTCA
*
22229159 AAAATATGTTTTCAAAG
1 AAAATATGTTTTAAAAG
*
22229176 AAAA-ATGTTTTAAAAT
1 AAAATATGTTTTAAAAG
22229192 AAAATA
1 AAAATA
22229198 ATATATCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (17 bp):
AAAATATGTTTTAAAAG
Found at i:22229221 original size:17 final size:17
Alignment explanation
Indices: 22229191--22229224 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
22229181 TGTTTTAAAA
22229191 TAAAATAATATATCAAG
1 TAAAATAATATATCAAG
22229208 TAAATATAAT-TATCAAG
1 TAAA-ATAATATATCAAG
22229225 ATCTTACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (17 bp):
TAAAATAATATATCAAG
Found at i:22230723 original size:14 final size:13
Alignment explanation
Indices: 22230685--22230726 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
22230675 TTAGGGCTAG
*
22230685 GGTTTAAGA-TTA
1 GGTTTTAGATTTA
22230697 GGTTTTAAGATTTA
1 GGTTTT-AGATTTA
22230711 TGGTTTTAGATTTA
1 -GGTTTTAGATTTA
22230725 GG
1 GG
22230727 ATTAAGGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 5 0.19
13 5 0.19
14 10 0.38
15 6 0.23
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (13 bp):
GGTTTTAGATTTA
Found at i:22230845 original size:29 final size:28
Alignment explanation
Indices: 22230797--22230853 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
22230787 GTTTCATGGG
**
22230797 AATTTGGATTTCAATTTTTG-GAGTTTTA
1 AATTTGGATTTCAAAATTTGAGA-TTTTA
22230825 AATTTGTGATTTCAAAATTTGAGATTTTA
1 AATTTG-GATTTCAAAATTTGAGATTTTA
22230854 TGAAAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 17 0.68
30 2 0.08
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.51
Consensus pattern (28 bp):
AATTTGGATTTCAAAATTTGAGATTTTA
Found at i:22234459 original size:142 final size:143
Alignment explanation
Indices: 22234124--22234459 Score: 304
Period size: 143 Copynumber: 2.4 Consensus size: 143
22234114 TTTAAAGTAC
* * * ** * * ** * * *
22234124 AAAAAATCATGAAACATTATAAAATTAAAATTTAAAAATTTTCATGAAAATCCGACATT-GAGAA
1 AAAAAATCATAAAATATTATAAAATCATGATCTAAAAAGTTTCACAAAAAACCAAC-TTCGAAAA
* * *
22234188 GGTCAAACTACGAAATTACCCCTAAAGATACTTTGATAATTTCACACCTCACAAGGTATTGCTGT
65 GGTCAAACTACGAAATTAACCCTAAAGATACTTTGATAATTTCACACCTCACAAGGTATTGATCT
22234253 GATTTCAAATGCAT
130 GATTTCAAATGCAT
* *** ***
22234267 AAAAAATCATCAAATATTATAAAATCATGATCTGTGAAGTTTCGTGAAAAACCAACTTCGAAAAG
1 AAAAAATCATAAAATATTATAAAATCATGATCTAAAAAGTTTCACAAAAAACCAACTTCGAAAAG
* * * * * *
22234332 GTCAAAGTATGAAATTAACCCTAATGGTA-TTTGGTAATTTCACACCTCCCAA-G-ATGTGATCT
66 GTCAAACTACGAAATTAACCCTAAAGATACTTTGATAATTTCACACCTCACAAGGTAT-TGATCT
*
22234394 GAGTTTTAAATGCAT
130 GA-TTTCAAATGCAT
** * *
22234409 AAAAAATCATTAAAATA-TATTCAATTATGATCTAAAAATTTTCACAAAAAA
1 AAAAAATCA-TAAAATATTATAAAATCATGATCTAAAAAGTTTCACAAAAAA
22234460 TTGATTTCGA
Statistics
Matches: 154, Mismatches: 35, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
140 2 0.01
141 7 0.05
142 67 0.44
143 78 0.51
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (143 bp):
AAAAAATCATAAAATATTATAAAATCATGATCTAAAAAGTTTCACAAAAAACCAACTTCGAAAAG
GTCAAACTACGAAATTAACCCTAAAGATACTTTGATAATTTCACACCTCACAAGGTATTGATCTG
ATTTCAAATGCAT
Found at i:22234657 original size:20 final size:19
Alignment explanation
Indices: 22234634--22234676 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
22234624 GTTTTATCCG
*
22234634 TTTTCATCATGTTTGACCAA
1 TTTTCATCAAGTTT-ACCAA
* *
22234654 TTTTGATCAAGTTTACTAA
1 TTTTCATCAAGTTTACCAA
22234673 TTTT
1 TTTT
22234677 AACTTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (19 bp):
TTTTCATCAAGTTTACCAA
Found at i:22237293 original size:19 final size:21
Alignment explanation
Indices: 22237264--22237306 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
22237254 AAATATCATA
22237264 TTAATTAATAA-ATT-TATAAT
1 TTAATTAATAATATTATA-AAT
22237284 TTAATT-ATAATATTATAAAT
1 TTAATTAATAATATTATAAAT
22237304 TTA
1 TTA
22237307 TAAAATTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAATTAATAATATTATAAAT
Found at i:22239085 original size:15 final size:15
Alignment explanation
Indices: 22239065--22239096 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
22239055 CTCTTTTTAC
22239065 GTCTAATAATAAATT
1 GTCTAATAATAAATT
22239080 GTCTAATAATAAATT
1 GTCTAATAATAAATT
22239095 GT
1 GT
22239097 ATTGAAGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (15 bp):
GTCTAATAATAAATT
Found at i:22241005 original size:94 final size:94
Alignment explanation
Indices: 22240844--22241032 Score: 360
Period size: 94 Copynumber: 2.0 Consensus size: 94
22240834 ACAATGGAGG
*
22240844 GGAAGTGTTTCAATATAGCAGGAAAGCTTCCATACTTTTATAAACATCTCTGACCCCAACTTGGT
1 GGAAGTGTTTCAATATAGCAGGAAAGCTTCCATACTTTTATAAACATCTCTAACCCCAACTTGGT
22240909 GTGTCTGGATTAAATAATAATTTTTAAAA
66 GTGTCTGGATTAAATAATAATTTTTAAAA
*
22240938 GGAAGTGTTTCAATATAGCAGGAAAGCTTCCATGCTTTTATAAACATCTCTAACCCCAACTTGGT
1 GGAAGTGTTTCAATATAGCAGGAAAGCTTCCATACTTTTATAAACATCTCTAACCCCAACTTGGT
22241003 GTGTCTGGATTAAATAATAATTTTTAAAA
66 GTGTCTGGATTAAATAATAATTTTTAAAA
22241032 G
1 G
22241033 TATCATTAAC
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (94 bp):
GGAAGTGTTTCAATATAGCAGGAAAGCTTCCATACTTTTATAAACATCTCTAACCCCAACTTGGT
GTGTCTGGATTAAATAATAATTTTTAAAA
Found at i:22241391 original size:26 final size:23
Alignment explanation
Indices: 22241357--22241430 Score: 67
Period size: 26 Copynumber: 2.9 Consensus size: 23
22241347 TATTAATATA
22241357 ATTATTAAAATATTAAATAATAATTT
1 ATTATTAAAATATTAAAT--T-ATTT
*
22241383 ATTAGTAAAGTATATTGAAATTATTT
1 ATTATTAAA--ATATT-AAATTATTT
22241409 ATTATTAAAATTATTAACATTA
1 ATTATTAAAA-TATTAA-ATTA
22241431 AAAAATAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
24 3 0.07
25 8 0.20
26 20 0.49
27 1 0.02
28 5 0.12
29 4 0.10
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (23 bp):
ATTATTAAAATATTAAATTATTT
Found at i:22241604 original size:8 final size:8
Alignment explanation
Indices: 22241520--22241665 Score: 91
Period size: 8 Copynumber: 17.5 Consensus size: 8
22241510 TGTTATTCTT
22241520 TATATT-A
1 TATATTAA
*
22241527 TTTATTAA
1 TATATTAA
*
22241535 TATATTAT
1 TATATTAA
*
22241543 TATGAATAA
1 TAT-ATTAA
22241552 TATATTATTA
1 TATATTA--A
22241562 TAATATTAA
1 T-ATATTAA
*
22241571 T-TAATTAG
1 TAT-ATTAA
*
22241579 TATACTAA
1 TATATTAA
22241587 TATTTATTAA
1 TA--TATTAA
22241597 TATATTAA
1 TATATTAA
*
22241605 TATATTAT
1 TATATTAA
*
22241613 TAT-TTAT
1 TATATTAA
* *
22241620 TAAATTAT
1 TATATTAA
22241628 TATATTAA
1 TATATTAA
*
22241636 TATTATATTA
1 TA-TAT-TAA
*
22241646 TTTATTAA
1 TATATTAA
22241654 TATATTAA
1 TATATTAA
22241662 TATA
1 TATA
22241666 ATATTATTTA
Statistics
Matches: 109, Mismatches: 18, Indels: 23
0.73 0.12 0.15
Matches are distributed among these distances:
7 12 0.11
8 64 0.59
9 15 0.14
10 12 0.11
11 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (8 bp):
TATATTAA
Found at i:22241635 original size:31 final size:28
Alignment explanation
Indices: 22241520--22241676 Score: 112
Period size: 26 Copynumber: 5.5 Consensus size: 28
22241510 TGTTATTCTT
* *
22241520 TATATTATTTATTAATATATTATTATGAATAA
1 TATATTA-TTATTTAT-TATTA-TAT-ATTAA
* * *
22241552 TATATTATTATAATATTAAT-TA-ATTAG
1 TATATTATTAT-TTATTATTATATATTAA
* *
22241579 TATACTAATATTTATTA--ATATATTAA
1 TATATTATTATTTATTATTATATATTAA
22241605 TATATTATTATTTATTAAATTATTATATTAA
1 TATATTATTATTTATT--ATTA-TATATTAA
22241636 TAT-TATATTATTTATTA--ATATATTAA
1 TATAT-TATTATTTATTATTATATATTAA
*
22241662 TATAATATTATTTAT
1 TATATTATTATTTAT
22241677 AAGTAAAATT
Statistics
Matches: 103, Mismatches: 12, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
25 2 0.02
26 44 0.43
27 13 0.13
28 1 0.01
29 3 0.03
30 2 0.02
31 29 0.28
32 9 0.09
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (28 bp):
TATATTATTATTTATTATTATATATTAA
Found at i:22241669 original size:26 final size:26
Alignment explanation
Indices: 22241549--22241676 Score: 123
Period size: 26 Copynumber: 4.7 Consensus size: 26
22241539 TTATTATGAA
* *
22241549 TAATATATTATTATAATATTAAT-TAAT
1 TAATATAATATTAT-TTATTAATAT-AT
* * *
22241576 TAGTATACTAATATTTATTAATATAT
1 TAATATAATATTATTTATTAATATAT
*
22241602 TAATATATTATTATTTATTAAATTATTATAT
1 TAATATAATATTATTTATT--A--A-TATAT
*
22241633 TAATATTATATTATTTATTAATATAT
1 TAATATAATATTATTTATTAATATAT
22241659 TAATATAATATTATTTAT
1 TAATATAATATTATTTAT
22241677 AAGTAAAATT
Statistics
Matches: 85, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
26 47 0.55
27 13 0.15
28 1 0.01
29 1 0.01
30 1 0.01
31 22 0.26
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.55
Consensus pattern (26 bp):
TAATATAATATTATTTATTAATATAT
Found at i:22241671 original size:57 final size:58
Alignment explanation
Indices: 22241519--22241676 Score: 205
Period size: 57 Copynumber: 2.7 Consensus size: 58
22241509 TTGTTATTCT
* *
22241519 TTATATTATTTATTAATATATTATTATGAATAATATATTATTATAATATTAATTAATTAG
1 TTATATTATTTATTAATATATTAATAT-AATATTAT-TTATTATAATATTAATTAATTAG
* *
22241579 TATACTAATATTTATTAATATATTAATATATTATTATTTATTA-AATTATTATATTAA-TA-
1 T-TA-TATTATTTATTAATATATTAATATAATATTATTTATTATAA-TATTA-ATTAATTAG
22241638 TTATATTATTTATTAATATATTAATATAATATTATTTAT
1 TTATATTATTTATTAATATATTAATATAATATTATTTAT
22241677 AAGTAAAATT
Statistics
Matches: 88, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
57 34 0.39
58 2 0.02
59 3 0.03
60 14 0.16
61 13 0.15
62 22 0.25
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (58 bp):
TTATATTATTTATTAATATATTAATATAATATTATTTATTATAATATTAATTAATTAG
Found at i:22243221 original size:6 final size:6
Alignment explanation
Indices: 22243206--22243282 Score: 54
Period size: 6 Copynumber: 12.5 Consensus size: 6
22243196 TATTTGCTTT
*
22243206 TTTTTCC TTTTTC TTTTTC TTCTTCTTC TTTTTC TGTTT- TTTTT- TTTTT-
1 TTTTT-C TTTTTC TTTTTC -T-TT-TTC TTTTTC TTTTTC TTTTTC TTTTTC
*
22243255 TTTTAC TTTTTC TATTTT- TTTATTC TTT
1 TTTTTC TTTTTC T-TTTTC TTT-TTC TTT
22243283 CATATTTAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
5 15 0.25
6 23 0.39
7 15 0.25
8 3 0.05
9 3 0.05
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.81
Consensus pattern (6 bp):
TTTTTC
Found at i:22243222 original size:15 final size:14
Alignment explanation
Indices: 22243190--22243274 Score: 66
Period size: 15 Copynumber: 5.8 Consensus size: 14
22243180 ATGAGTTGTT
*
22243190 TTTCTTTATTTGCTT
1 TTTCTTT-TTTTCTT
*
22243205 TTTTTTCCTTTTTCTT
1 TTTCTT--TTTTTCTT
*
22243221 TTTCTTCTTCTTCTT
1 TTTCTT-TTTTTCTT
22243236 TTTCTGTTTTTT-TT
1 TTTCT-TTTTTTCTT
*
22243250 TTT-TTTTTTACTT
1 TTTCTTTTTTTCTT
22243263 TTTCTATTTTTT
1 TTTCT-TTTTTT
22243275 TATTCTTTCA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
12 5 0.09
13 6 0.11
14 6 0.11
15 27 0.47
16 12 0.21
17 1 0.02
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTCTTTTTTTCTT
Found at i:22243249 original size:27 final size:27
Alignment explanation
Indices: 22243206--22243281 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 27
22243196 TATTTGCTTT
22243206 TTTTTCCTTTTTCTTTTTCTTCTTCTT-C
1 TTTTT-CTTTTT-TTTTTCTTCTTCTTAC
* *
22243234 TTTTTCTGTTTTTTTTT-TTTTTTTTAC
1 TTTTTCT-TTTTTTTTTCTTCTTCTTAC
22243261 TTTTTCTATTTTTTTATTCTT
1 TTTTTCT-TTTTTTT-TTCTT
22243282 TCATATTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 6 0.15
27 22 0.54
28 11 0.27
29 2 0.05
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.80
Consensus pattern (27 bp):
TTTTTCTTTTTTTTTTCTTCTTCTTAC
Found at i:22243276 original size:17 final size:18
Alignment explanation
Indices: 22243252--22243289 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
22243242 TTTTTTTTTT
22243252 TTTTTTTACTT-TTTC-TA
1 TTTTTTTA-TTCTTTCATA
22243269 TTTTTTTATTCTTTCATA
1 TTTTTTTATTCTTTCATA
22243287 TTT
1 TTT
22243290 AATAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 12 0.63
18 5 0.26
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTTATTCTTTCATA
Found at i:22243490 original size:17 final size:17
Alignment explanation
Indices: 22243468--22243506 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
22243458 CAACATTTTC
*
22243468 TTTTTTTAGT-TTTGTT
1 TTTTTTTTGTGTTTGTT
*
22243484 TTTTTTTTTTGTTTGTT
1 TTTTTTTTGTGTTTGTT
22243501 TTTTTT
1 TTTTTT
22243507 GCTTTTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (17 bp):
TTTTTTTTGTGTTTGTT
Found at i:22245066 original size:18 final size:18
Alignment explanation
Indices: 22245035--22245081 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
22245025 CCGAACTACT
* *
22245035 TTTA-TTTTGGTATTTTG
1 TTTATTTTTGTTATTTTA
22245052 TTTATTTTTGTTATTTTA
1 TTTATTTTTGTTATTTTA
22245070 TTTATTTTTGTT
1 TTTATTTTTGTT
22245082 TTATGCTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.13, C:0.00, G:0.11, T:0.77
Consensus pattern (18 bp):
TTTATTTTTGTTATTTTA
Found at i:22245837 original size:20 final size:20
Alignment explanation
Indices: 22245798--22245836 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
22245788 CCAAATTATG
*
22245798 AAAAATTTAGAAATAAAAAT
1 AAAAATTTAAAAATAAAAAT
22245818 AAAAATTATAAAAATAAAA
1 AAAAATT-TAAAAATAAAA
22245837 TTCAATGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAAATTTAAAAATAAAAAT
Done.