Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 17 of 106
Found at i:2831926 original size:22 final size:23
Alignment explanation
Indices: 2831891--2831934 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
2831881 ATTGGAAAAT
*
2831891 TATAAAAATCAATTTAAAAATATA
1 TATAAAAA-CAATTAAAAAATATA
2831915 TATAAAAA-AATTAAAAAATA
1 TATAAAAACAATTAAAAAATA
2831935 ATTTTCATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
TATAAAAACAATTAAAAAATATA
Found at i:2832333 original size:132 final size:132
Alignment explanation
Indices: 2832096--2832358 Score: 429
Period size: 132 Copynumber: 2.0 Consensus size: 132
2832086 TAAGTCTTAC
* * * *
2832096 CAAACTATTGGGAGACTTTACTAATTTTTCAGAGTAAAATACTTTAATGAATATGATGACGGAGT
1 CAAACTATTGAGAGACTTTACTAATTTTTCAGAATAAAATACTTTAATGAATATGATGACAGAGC
* * * *
2832161 CTCTTCAAAGTGGGATACTAGTTTCCATGAATACTCCTGAGGTGAGAAAATTATCTTAAATTGCT
66 CTCTTCAAAGTAGGATACTAGTCTCCATAAATACTCCTGAGGTGAGAAAATTATCTTAAACTGCT
2832226 AT
131 AT
2832228 CAAACTATTTGAG-GACTTTACTAATTTTTCAGAATAAAATACTTTAATGAATATGATGACAGAG
1 CAAACTA-TTGAGAGACTTTACTAATTTTTCAGAATAAAATACTTTAATGAATATGATGACAGAG
*
2832292 CCTCTTCAGAGTAGGATACTAGTCTCCATAAATACTCCTGAGGTGAGAAAATTATCTTAAACTGC
65 CCTCTTCAAAGTAGGATACTAGTCTCCATAAATACTCCTGAGGTGAGAAAATTATCTTAAACTGC
2832357 TA
130 TA
2832359 AAAAAACTAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
132 117 0.97
133 4 0.03
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (132 bp):
CAAACTATTGAGAGACTTTACTAATTTTTCAGAATAAAATACTTTAATGAATATGATGACAGAGC
CTCTTCAAAGTAGGATACTAGTCTCCATAAATACTCCTGAGGTGAGAAAATTATCTTAAACTGCT
AT
Found at i:2834619 original size:77 final size:77
Alignment explanation
Indices: 2834518--2834663 Score: 202
Period size: 77 Copynumber: 1.9 Consensus size: 77
2834508 AGGTTTTGGT
** * * * *
2834518 TGGGGACTTAACTAGGATTTATTGTGAAGGCTGGGGTGTTTGGCCAGTGAATGGAAGGATTATTC
1 TGGGGACTTAACTAGGATTTATTGTGAAGGCTAAGGTGTTTAGACAATGAATGGAAGGACTATTC
2834583 CTAGGACAAGGG
66 CTAGGACAAGGG
* * * *
2834595 TGGGGGCTTAACTGGGATTTATTGTGGAGGCTAAGGTGTTTAGACAATGAATGGAGGGACTATTC
1 TGGGGACTTAACTAGGATTTATTGTGAAGGCTAAGGTGTTTAGACAATGAATGGAAGGACTATTC
2834660 CTAG
66 CTAG
2834664 CTCAAGGCTG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
77 59 1.00
ACGTcount: A:0.25, C:0.10, G:0.36, T:0.29
Consensus pattern (77 bp):
TGGGGACTTAACTAGGATTTATTGTGAAGGCTAAGGTGTTTAGACAATGAATGGAAGGACTATTC
CTAGGACAAGGG
Found at i:2835045 original size:20 final size:19
Alignment explanation
Indices: 2835022--2835070 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
2835012 TTTTACTTTT
2835022 TTTATTTTTATTTTTGGTAA
1 TTTATTTTTATTTTT-GTAA
* *
2835042 TTTATTTTTGTTTTTTTAA
1 TTTATTTTTATTTTTGTAA
*
2835061 TTTAATTTTA
1 TTTATTTTTA
2835071 ATTAATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.73
Consensus pattern (19 bp):
TTTATTTTTATTTTTGTAA
Found at i:2835055 original size:19 final size:20
Alignment explanation
Indices: 2835022--2835070 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
2835012 TTTTACTTTT
*
2835022 TTTATTTTTATTTTTGGTAA
1 TTTATTTTTAGTTTTGGTAA
**
2835042 TTTATTTTT-GTTTTTTTAA
1 TTTATTTTTAGTTTTGGTAA
*
2835061 TTTAATTTTA
1 TTTATTTTTA
2835071 ATTAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.73
Consensus pattern (20 bp):
TTTATTTTTAGTTTTGGTAA
Found at i:2835059 original size:14 final size:14
Alignment explanation
Indices: 2835003--2835059 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
2834993 TTTTTATTGC
*
2835003 TTTTTGATTTTTTA
1 TTTTTGTTTTTTTA
2835017 CTTTTT-TTATTTTTA
1 -TTTTTGTT-TTTTTA
* **
2835032 TTTTTGGTAATTTA
1 TTTTTGTTTTTTTA
2835046 TTTTTGTTTTTTTA
1 TTTTTGTTTTTTTA
2835060 ATTTAATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (14 bp):
TTTTTGTTTTTTTA
Found at i:2835079 original size:19 final size:19
Alignment explanation
Indices: 2835057--2835111 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
2835047 TTTTGTTTTT
2835057 TTAATTTAATTTTAATTAA
1 TTAATTTAATTTTAATTAA
** *
2835076 TTAATTTTGTTTGTAATT-T
1 TTAATTTAATTT-TAATTAA
2835095 TTAA-TTAATTTT-ATTAA
1 TTAATTTAATTTTAATTAA
2835112 CTATAAATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
16 3 0.11
17 1 0.04
18 5 0.18
19 14 0.50
20 5 0.18
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
TTAATTTAATTTTAATTAA
Found at i:2835394 original size:8 final size:8
Alignment explanation
Indices: 2835383--2835460 Score: 52
Period size: 8 Copynumber: 9.6 Consensus size: 8
2835373 AAGTTTTCCT
2835383 TTTTTTTG
1 TTTTTTTG
*
2835391 TTTTTTTT
1 TTTTTTTG
2835399 TATTTTTTG
1 T-TTTTTTG
*
2835408 GTTTTTTG
1 TTTTTTTG
* *
2835416 -GTTTCTG
1 TTTTTTTG
*
2835423 ATTTTTT-
1 TTTTTTTG
* *
2835430 TATTTTGG
1 TTTTTTTG
2835438 TTTTTTTCG
1 TTTTTTT-G
2835447 ATTTTTTTG
1 -TTTTTTTG
2835456 TTTTT
1 TTTTT
2835461 CCTAATTTTT
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
7 9 0.17
8 29 0.55
9 8 0.15
10 7 0.13
ACGTcount: A:0.05, C:0.03, G:0.13, T:0.79
Consensus pattern (8 bp):
TTTTTTTG
Found at i:2835459 original size:17 final size:18
Alignment explanation
Indices: 2835432--2835479 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
2835422 GATTTTTTTA
*
2835432 TTTTGGTTTTTT-TCGATT
1 TTTTGGTTTTTTCT-AATT
* *
2835450 TTTTTGTTTTTCCTAATT
1 TTTTGGTTTTTTCTAATT
2835468 TTTTGGTTTTTT
1 TTTTGGTTTTTT
2835480 TAAAACTAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.06, C:0.06, G:0.12, T:0.75
Consensus pattern (18 bp):
TTTTGGTTTTTTCTAATT
Found at i:2835676 original size:22 final size:22
Alignment explanation
Indices: 2835648--2835690 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2835638 GAGAACTTAG
* *
2835648 AGATTATGCCTAAAGGTTTTAA
1 AGATTATGCCCAAAAGTTTTAA
2835670 AGATTATGCCCAAAAGTTTTA
1 AGATTATGCCCAAAAGTTTTA
2835691 CAAATCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (22 bp):
AGATTATGCCCAAAAGTTTTAA
Found at i:2835915 original size:125 final size:125
Alignment explanation
Indices: 2835682--2835928 Score: 302
Period size: 125 Copynumber: 2.0 Consensus size: 125
2835672 ATTATGCCCA
* * *
2835682 AAAGTTTTACAAATCTCAAAATTTTTGAATGCTCTTCATAGTAGAGACATTGAAACTTTCAAAAT
1 AAAGTTTTACAAATCTCAAAATCTTTGAATACTCATCATAGTAGAGACATTGAAACTTTCAAAAT
* ** ** * *
2835747 TTAAAATATTTTGTCCAGAAGTCTTACAGATTATGTCTGAGGTCTTAGAGATTATACATG
66 TTAAAATATTTTCTCCAGAAGTCTTACAGATTATCCCAAAGGTCTTAAAAATTATACATG
* * *
2835807 AAAGTTTTAGAAATCTCAAAATCTTTGAATACTCATCATAGTAGAGGCATTG-AACTTTGAAAAT
1 AAAGTTTTACAAATCTCAAAATCTTTGAATACTCATCATAGTAGAGACATTGAAACTTTCAAAAT
* * *
2835871 TTAAAATGTTTTACT-C-GAAGGTCTTATAGATTTTACCCAAAGGTCTTAAAAATTATAC
66 TTAAAATATTTT-CTCCAGAA-GTCTTACAGATTAT-CCCAAAGGTCTTAAAAATTATAC
2835929 TTGGAGATCT
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
123 3 0.03
124 35 0.34
125 65 0.63
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (125 bp):
AAAGTTTTACAAATCTCAAAATCTTTGAATACTCATCATAGTAGAGACATTGAAACTTTCAAAAT
TTAAAATATTTTCTCCAGAAGTCTTACAGATTATCCCAAAGGTCTTAAAAATTATACATG
Found at i:2836089 original size:148 final size:146
Alignment explanation
Indices: 2835767--2836096 Score: 353
Period size: 148 Copynumber: 2.2 Consensus size: 146
2835757 TTGTCCAGAA
* * * * * *
2835767 GTCTTACAGATTATGTCTGAGGTCTTAGAGATTATACATGAAAGTTTTAGAAATCTCAAAATCTT
1 GTCTTAAAGATTATGTCTGAAGACTTAGAGATTATACACGAAAGTCTTACAAATCTCAAAATCTT
* * *
2835832 TGAATACTCATCATAGTAGAGGCATTGAACTTTGAAAATTTAAAATGTTTTACTCGAAGGTCTTA
66 TGAATACTCATCATAGTAAAGGCATTGAACTTTGAAAATTTAAAATGTTTTACTCAAAGGTCTAA
* * *
2835897 TAGATTTTACCCAAAG
131 GAAATTATACCCAAAG
* * * * ** *
2835913 GTCTTAAAAATTAT-ACTTGGAGATCTTAGACATTATGTACGAAGGTCTTACAAATCTCAAAAAT
1 GTCTTAAAGATTATGTC-TGAAGA-CTTAGAGATTATACACGAAAGTCTTACAAATCTC-AAAAT
* *
2835977 -TTTGAATGCTCCTCATA-TCAAAGGCATTGAAACTTTGAAAATTTAAAATGTTTTAC-CTAAAG
63 CTTTGAATACTCATCATAGT-AAAGGCATTG-AACTTTGAAAATTTAAAATGTTTTACTC-AAAG
* **
2836039 GTCTAAGAAATTATGCCTGAAG
125 GTCTAAGAAATTATACCCAAAG
2836061 GTCTTAAAGATTATGTCTAGAAGACTTAGAGATTAT
1 GTCTTAAAGATTATGTCT-GAAGACTTAGAGATTAT
2836097 CTTGGATGCC
Statistics
Matches: 148, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
145 1 0.01
146 16 0.11
147 52 0.35
148 74 0.50
149 5 0.03
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (146 bp):
GTCTTAAAGATTATGTCTGAAGACTTAGAGATTATACACGAAAGTCTTACAAATCTCAAAATCTT
TGAATACTCATCATAGTAAAGGCATTGAACTTTGAAAATTTAAAATGTTTTACTCAAAGGTCTAA
GAAATTATACCCAAAG
Found at i:2836633 original size:32 final size:32
Alignment explanation
Indices: 2836586--2836647 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
2836576 AAACATAAGT
2836586 GATGCAAATACGAATGTCCCTTTCATGATGTA
1 GATGCAAATACGAATGTCCCTTTCATGATGTA
** **
2836618 GATGCAAATGTGAATGTCTTTTTCATGATG
1 GATGCAAATACGAATGTCCCTTTCATGATG
2836648 CACATATAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (32 bp):
GATGCAAATACGAATGTCCCTTTCATGATGTA
Found at i:2836820 original size:32 final size:32
Alignment explanation
Indices: 2836773--2836834 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
2836763 AAACATAAGT
2836773 GATGCAAATACGAATGTCCCTTTCATGATGTA
1 GATGCAAATACGAATGTCCCTTTCATGATGTA
** **
2836805 GATGCAAATGTGAATGTCTTTTTCATGATG
1 GATGCAAATACGAATGTCCCTTTCATGATG
2836835 CACATATAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (32 bp):
GATGCAAATACGAATGTCCCTTTCATGATGTA
Found at i:2836821 original size:187 final size:187
Alignment explanation
Indices: 2836506--2836874 Score: 738
Period size: 187 Copynumber: 2.0 Consensus size: 187
2836496 CCTTTTATGT
2836506 AAATGCCCCTACAAATATTTTATCTATGATGCAAATGCAAATGTCTTTCTTAAGATGCACATACA
1 AAATGCCCCTACAAATATTTTATCTATGATGCAAATGCAAATGTCTTTCTTAAGATGCACATACA
2836571 AGTGCAAACATAAGTGATGCAAATACGAATGTCCCTTTCATGATGTAGATGCAAATGTGAATGTC
66 AGTGCAAACATAAGTGATGCAAATACGAATGTCCCTTTCATGATGTAGATGCAAATGTGAATGTC
2836636 TTTTTCATGATGCACATATAAGTGTGAATACAAGTGATACAAATGTAACTATGATGC
131 TTTTTCATGATGCACATATAAGTGTGAATACAAGTGATACAAATGTAACTATGATGC
2836693 AAATGCCCCTACAAATATTTTATCTATGATGCAAATGCAAATGTCTTTCTTAAGATGCACATACA
1 AAATGCCCCTACAAATATTTTATCTATGATGCAAATGCAAATGTCTTTCTTAAGATGCACATACA
2836758 AGTGCAAACATAAGTGATGCAAATACGAATGTCCCTTTCATGATGTAGATGCAAATGTGAATGTC
66 AGTGCAAACATAAGTGATGCAAATACGAATGTCCCTTTCATGATGTAGATGCAAATGTGAATGTC
2836823 TTTTTCATGATGCACATATAAGTGTGAATACAAGTGATACAAATGTAACTAT
131 TTTTTCATGATGCACATATAAGTGTGAATACAAGTGATACAAATGTAACTAT
2836875 CTTTTTTTTT
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
187 182 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (187 bp):
AAATGCCCCTACAAATATTTTATCTATGATGCAAATGCAAATGTCTTTCTTAAGATGCACATACA
AGTGCAAACATAAGTGATGCAAATACGAATGTCCCTTTCATGATGTAGATGCAAATGTGAATGTC
TTTTTCATGATGCACATATAAGTGTGAATACAAGTGATACAAATGTAACTATGATGC
Found at i:2837019 original size:126 final size:127
Alignment explanation
Indices: 2836889--2837210 Score: 425
Period size: 130 Copynumber: 2.5 Consensus size: 127
2836879 TTTTTTTTTG
* * *
2836889 TTTTTGTAGCATAC-AGATCAAATGTCTTTTAC-AAGTGATACAAATGCAAAGACTCGTTTTGTT
1 TTTTTGTAGCATACAAG-TCAAATGTCTTTTGCAAAGTGATGCAAATGCAAAGACTCTTTTTGTT
* * * * * *
2836952 TTTGCAACATGTAAATCAAATGTCTTTCTAATGATACACATGTAATTGATGCAAATGCAATTTTT
65 TTTACAACATGCAAATCAAATATCTTTCTAATGATACACATGCAACTGAAGCAAATGCAA--TTT
* * * *
2837017 TTTTTGGTAACATGCAAGTCAAATGTCTTTTGCAAAGTGATGCAAATGCGAAGACTCTTTTTATT
1 TTTTT-GTAGCATACAAGTCAAATGTCTTTTGCAAAGTGATGCAAATGCAAAGACTCTTTTTGTT
* * *
2837082 TTTACAACATGCATATCAAATATCTTTCTAATTATGCACATGCAACTGAAGCAAATGCAA-TT
65 TTTACAACATGCAAATCAAATATCTTTCTAATGATACACATGCAACTGAAGCAAATGCAATTT
* *
2837144 TTTTTGTAGCATACAAGTCAAATATCTTTTGCAAAGTGATGCAAATACAAAGACTCTTTTTGTTT
1 TTTTTGTAGCATACAAGTCAAATGTCTTTTGCAAAGTGATGCAAATGCAAAGACTCTTTTTGTTT
2837209 TT
66 TT
2837211 CTTTTTTGAA
Statistics
Matches: 169, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
126 56 0.33
127 7 0.04
128 5 0.03
129 21 0.12
130 80 0.47
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (127 bp):
TTTTTGTAGCATACAAGTCAAATGTCTTTTGCAAAGTGATGCAAATGCAAAGACTCTTTTTGTTT
TTACAACATGCAAATCAAATATCTTTCTAATGATACACATGCAACTGAAGCAAATGCAATTT
Found at i:2838365 original size:85 final size:85
Alignment explanation
Indices: 2838275--2838431 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 85
2838265 TAAGATTTTG
* ** *
2838275 ACTAAAACTTTATTCACTTTTTGCCTTAAATTTTCATCTCT-AAGATGCATGTCTTTCTTTCTTT
1 ACTAAAACTTCATTCACTTTTTGCCCCAAATTTCCATCTCTGAAG-TGCATGTCTTTCTTTCTTT
*
2838339 GCTTTTTTTTTTTTTATTCTA
65 GCTCTTTTTTTTTTTATTCTA
* * * * *
2838360 ACTAAAGCTTCATTCACTTTTTGCCCCACATTTCCATCTTTGAAGTGCATTTTTTTCTTTCTTTG
1 ACTAAAACTTCATTCACTTTTTGCCCCAAATTTCCATCTCTGAAGTGCATGTCTTTCTTTCTTTG
2838425 CTCTTTT
66 CTCTTTT
2838432 AGCTCTTTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
85 58 0.95
86 3 0.05
ACGTcount: A:0.18, C:0.21, G:0.07, T:0.54
Consensus pattern (85 bp):
ACTAAAACTTCATTCACTTTTTGCCCCAAATTTCCATCTCTGAAGTGCATGTCTTTCTTTCTTTG
CTCTTTTTTTTTTTATTCTA
Found at i:2838467 original size:15 final size:13
Alignment explanation
Indices: 2838435--2838499 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
2838425 CTCTTTTAGC
2838435 TCTTTTTTTATCTT
1 TCTTTTTTT-TCTT
*
2838449 T-TTTTTTGCTCTT
1 TCTTTTTT-TTCTT
*
2838462 TCTTTTTTTTTTCAT
1 TC--TTTTTTTTCTT
2838477 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
2838490 TATTTTTTTT
1 TCTTTTTTTT
2838500 TTGTTGGAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 30 0.71
14 1 0.02
15 5 0.12
16 6 0.14
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.82
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:2838500 original size:28 final size:27
Alignment explanation
Indices: 2838437--2838501 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
2838427 CTTTTAGCTC
* *
2838437 TTTTTTTATCTTTTTTTTTGCTCTTTCT
1 TTTTTTTTTCTTTTTTTTT-CTCTTTAT
2838465 TTTTTTTTTCATTCTTTTTTT-TCTTTAT
1 TTTTTTTTTC-TT-TTTTTTTCTCTTTAT
2838493 TTTTTTTTT
1 TTTTTTTTT
2838502 GTTGGAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 24 0.73
29 2 0.06
30 7 0.21
ACGTcount: A:0.05, C:0.11, G:0.02, T:0.83
Consensus pattern (27 bp):
TTTTTTTTTCTTTTTTTTTCTCTTTAT
Found at i:2847374 original size:3 final size:3
Alignment explanation
Indices: 2847366--2847390 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2847356 ATTAATTCTA
2847366 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
2847391 TCAATGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:2848383 original size:18 final size:18
Alignment explanation
Indices: 2848362--2848396 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2848352 ATGTGCCATT
* *
2848362 TAACTACCCTGTGCCACG
1 TAACCACCCTATGCCACG
2848380 TAACCACCCTATGCCAC
1 TAACCACCCTATGCCAC
2848397 TATTCTGTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.43, G:0.11, T:0.20
Consensus pattern (18 bp):
TAACCACCCTATGCCACG
Found at i:2858045 original size:23 final size:22
Alignment explanation
Indices: 2858019--2858134 Score: 103
Period size: 22 Copynumber: 5.1 Consensus size: 22
2858009 AAATTTATTT
*
2858019 ATAAATAATAT-TTTATATAATAA
1 ATAAATAATATATTAATA-AAT-A
2858042 ATAAATAATATATTAATAAATA
1 ATAAATAATATATTAATAAATA
* *
2858064 ATAAATATTATATTAAGAAATA
1 ATAAATAATATATTAATAAATA
* *
2858086 TTATTAATAAATAATATT-AT-ATTA
1 --ATAAAT-AAT-ATATTAATAAATA
*
2858110 GTAAATAATATATTAATAAATA
1 ATAAATAATATATTAATAAATA
2858132 ATA
1 ATA
2858135 TAAAGAATAA
Statistics
Matches: 75, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
20 5 0.07
21 5 0.07
22 30 0.40
23 14 0.19
24 13 0.17
25 3 0.04
26 5 0.07
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
ATAAATAATATATTAATAAATA
Found at i:2858059 original size:15 final size:15
Alignment explanation
Indices: 2858041--2858136 Score: 95
Period size: 15 Copynumber: 5.9 Consensus size: 15
2858031 TTATATAATA
2858041 AATAAATAATATATT
1 AATAAATAATATATT
2858056 AATAAATAATAAATATT
1 AATAAATAAT--ATATT
2858073 ATATTAAGA-AATATTATT
1 A-A-TAA-ATAATA-TATT
2858091 AATAAATAATATTATATT
1 AATAAAT-A-A-TATATT
*
2858109 AGTAAATAATATATT
1 AATAAATAATATATT
2858124 AATAAATAATATA
1 AATAAATAATATA
2858137 AAGAATAATA
Statistics
Matches: 69, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
15 29 0.42
16 4 0.06
17 10 0.14
18 17 0.25
19 8 0.12
20 1 0.01
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
AATAAATAATATATT
Found at i:2860628 original size:12 final size:11
Alignment explanation
Indices: 2860593--2860655 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 11
2860583 TTAATCATGC
2860593 AAAAAA-ACTA
1 AAAAAATACTA
2860603 AAAATATATA-TA
1 AAAA-A-ATACTA
2860615 AATAAAATACTA
1 AA-AAAATACTA
*
2860627 AATAAAATA-TT
1 AA-AAAATACTA
2860638 AAAAAATAC-A
1 AAAAAATACTA
2860648 AAAAAATA
1 AAAAAATA
2860656 GAAATGGCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
10 18 0.40
11 7 0.16
12 17 0.38
13 3 0.07
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (11 bp):
AAAAAATACTA
Found at i:2861473 original size:17 final size:17
Alignment explanation
Indices: 2861422--2861464 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
2861412 AACTACTTGT
*
2861422 TTTTTCATTTTTTTTTAG
1 TTTTT-ATTATTTTTTAG
2861440 TTTTT-TTAATTTTTTAG
1 TTTTTATT-ATTTTTTAG
2861457 TTTTTATT
1 TTTTTATT
2861465 CTTTATTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.09
17 13 0.59
18 7 0.32
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTATTTTTTAG
Found at i:2864474 original size:29 final size:30
Alignment explanation
Indices: 2864437--2864520 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
2864427 TATTATAATC
*
2864437 AATTAAATA-TTCAATCATTTATTTTTATAA
1 AATTAAATATTTAAAT-ATTTATTTTTATAA
* * **
2864467 AATT-AATATTTGAATATTCATTTTTATTC
1 AATTAAATATTTAAATATTTATTTTTATAA
2864496 AATTAAATATTTAAATATTTATTTT
1 AATTAAATATTTAAATATTTATTTT
2864521 ATTAATTGAG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 19 0.41
30 27 0.59
ACGTcount: A:0.40, C:0.05, G:0.01, T:0.54
Consensus pattern (30 bp):
AATTAAATATTTAAATATTTATTTTTATAA
Found at i:2864521 original size:29 final size:30
Alignment explanation
Indices: 2864435--2864527 Score: 104
Period size: 29 Copynumber: 3.2 Consensus size: 30
2864425 TTTATTATAA
*
2864435 TCAATTAAATA-TTCAATCATTTATTTTTAT
1 TCAATTAAATATTTAAAT-ATTTATTTTTAT
** * *
2864465 AAAATT-AATATTTGAATATTCATTTTTAT
1 TCAATTAAATATTTAAATATTTATTTTTAT
2864494 TCAATTAAATATTTAAATATTTA-TTTTAT
1 TCAATTAAATATTTAAATATTTATTTTTAT
2864523 T-AATT
1 TCAATT
2864528 GAGTTTTTGA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
28 4 0.08
29 26 0.49
30 23 0.43
ACGTcount: A:0.40, C:0.05, G:0.01, T:0.54
Consensus pattern (30 bp):
TCAATTAAATATTTAAATATTTATTTTTAT
Found at i:2865123 original size:11 final size:11
Alignment explanation
Indices: 2865107--2865143 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
2865097 TTTATATTTG
2865107 ATATATTATTA
1 ATATATTATTA
*
2865118 ATATATAATTTA
1 ATATATTA-TTA
2865130 ATATATTATTA
1 ATATATTATTA
2865141 ATA
1 ATA
2865144 AATCAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATATATTATTA
Found at i:2865154 original size:23 final size:23
Alignment explanation
Indices: 2865107--2865174 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
2865097 TTTATATTTG
* **
2865107 ATATATTATTAATATATAATTTA
1 ATATATTATTAATAAATAAGATA
*
2865130 ATATATTATTAATAAATCAGATA
1 ATATATTATTAATAAATAAGATA
*
2865153 ATGAAATTTATTAATAAGATAA
1 AT-ATA-TTATTAATAA-ATAA
2865175 ATCATATGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
23 21 0.58
24 2 0.06
25 10 0.28
26 3 0.08
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (23 bp):
ATATATTATTAATAAATAAGATA
Found at i:2865164 original size:28 final size:27
Alignment explanation
Indices: 2865128--2865202 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 27
2865118 ATATATAATT
2865128 TAATA-TATTATTAATAAATCAGATAATGA
1 TAATATTATTATTAATAAATC--AT-ATGA
*
2865157 -AAT-TTATTAATAAGATAAATCATATGA
1 TAATATTATT-ATTA-ATAAATCATATGA
2865184 TAATATT-TTATTAATAAAT
1 TAATATTATTATTAATAAAT
2865203 AAATTTTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
26 6 0.15
27 7 0.18
28 14 0.36
29 5 0.13
30 7 0.18
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (27 bp):
TAATATTATTATTAATAAATCATATGA
Found at i:2865177 original size:30 final size:30
Alignment explanation
Indices: 2865140--2865206 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
2865130 ATATATTATT
2865140 AATAAATCAGATAATGAA-A-TTTATTAATA
1 AATAAATCAGATAAT-AATATTTTATTAATA
* *
2865169 AGATAAATCATATGATAATATTTTATTAATA
1 A-ATAAATCAGATAATAATATTTTATTAATA
2865200 AATAAAT
1 AATAAAT
2865207 TTTTTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 3 0.09
30 19 0.58
31 11 0.33
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (30 bp):
AATAAATCAGATAATAATATTTTATTAATA
Found at i:2868360 original size:16 final size:16
Alignment explanation
Indices: 2868339--2868369 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2868329 ATATATGGAT
2868339 AATAATTTTAATTAAC
1 AATAATTTTAATTAAC
2868355 AATAATTTTAATTAA
1 AATAATTTTAATTAA
2868370 TAAAGTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
AATAATTTTAATTAAC
Found at i:2868891 original size:21 final size:21
Alignment explanation
Indices: 2868865--2868905 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
2868855 ATATTATTTT
2868865 AAAATAATTAATAGATGATTA
1 AAAATAATTAATAGATGATTA
*
2868886 AAAATAATTAATATATGATT
1 AAAATAATTAATAGATGATT
2868906 GAACAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (21 bp):
AAAATAATTAATAGATGATTA
Found at i:2869708 original size:669 final size:645
Alignment explanation
Indices: 2868466--2870946 Score: 2229
Period size: 654 Copynumber: 3.9 Consensus size: 645
2868456 AGGTTCAAAT
* * *
2868466 CTTATATAAATATATAAAAGCCAAAACCTTTGATTAAAAAAAAAAAGAAAATTGTCCAATGTGGA
1 CTTATATAAATATATAAAAGCCAAAGCCTTTGA-T----AAAAAAAGGAAATTGTCCAACGTGGA
* * * * *
2868531 TA-ATCTATATAATTGATATGTAGATAATTTTAAAAAATTATCATGTATCTTCTAATAAATTTAT
61 TAGCT-TATATAATTGACATATGGATAATTTTAAAAAATTATCAT-TATCTTCTAATAAATTAAT
*
2868595 TACATTTATGTTTTATTATTTACATTAAATTACTTTCAATTAAATTCATATTAAAGGTAATAAAA
124 TACATTTATGTTTTATTATTTACATTAAATCACTTTCAATTAAATTCATATTAAAGGTAATAAAA
* * * *
2868660 CTTTAATTGCCATCATTATAGAATAATTTTGTAACCTCATTTTCCAATTGTAAATATTCAACTTT
189 TTTTAATTGCCATCATCATAGAATAATTTTGTCACCTC-TTTTCCAATTGTAAATATTCAACTAT
* * * *
2868725 TAAATTACA--TTTGTGTAAAAATAAATTTAGTTGCCAATTTGTTAACCTATGACCTATTTATTT
253 TAAATTACATTTTTGTATAAAAAAAAATTTAGTTACCAATTTTTTAACCTATGACCTATTTATTT
* * * *
2868788 ATTCCATCATTTAAGCTATGTTATATATATACACACATAGACACAAACATGTTTAATATGAATAT
318 ACTCCACCATTTAAGCTATGTT-TATATAT----ATATAGACAC-AACATG------AT--ACAT
* * * * * * *
2868853 ATATATTATTTTAAAAT-AATTAATAGATGA-TTAAAAATAATTAATATATGATTGAACAAATTA
369 A-A-A-CATTTT-AAATGAA-T-ATATATTATTTTAAAATAATTAATAGATGATTAAATAAATTA
2868916 AAATTAATTTTGGTATGTATAATATTAAATGGATTTCATTATCATTATTACACTAATTTCAAAAT
428 AAATTAATTTTGGTATGTATAATATT-AATGGATTTCATTATCATTATTACACTAATTTCAAAAT
2868981 CTTTCCTTTTTCATTTCTCTCAAACAAGTTAATACACATTATGTTTGATTATTATAATTGTCAAG
492 CTTTCCTTTTTCATTTCTCT-AAACAAGTTAATACACATTATGTTTGATTATTATAATTGTCAAG
* *
2869046 CATAAATTACTCTCAATTTAAAATACTATTATTAATCTTAATTTTGTTCTTAAATTCATTTTAAT
556 -ATAAATTACTCTCAATTTAAAATACTATTATTGATCTT-ATTTGGTTCTTAAATT--TTTTAAT
2869111 CAATTAGTCAATCAAAAATTACAAATCAA
617 CAATTAGTCAATCAAAAATTACAAATCAA
* *
2869140 CTTATATAAATATATAAAAGTCAAAGCTTTTGATAAAAAAAGGAAATTGTCCAACGTGGATAGCT
1 CTTATATAAATATATAAAAGCCAAAGCCTTTGATAAAAAAAGGAAATTGTCCAACGTGGATAGCT
* *
2869205 TATATAATTGACATATGGATAATTTTAAAAATTTTATCATGTACCTTCTAATAAATTAATTACAT
66 TATATAATTGACATATGGATAATTTTAAAAA-ATTATCAT-TATCTTCTAATAAATTAATTACAT
* * * *
2869270 TTATATTTTATTGTTTACCTTAAATCACTTTC-ATTAAATTCATATTAAAAGTAATAAAATTTTA
129 TTATGTTTTATTATTTACATTAAATCACTTTCAATTAAATTCATATTAAAGGTAATAAAATTTTA
* *
2869334 ATTGCCATCATCATAGAATAATTTTGTCACCTTCTTTTCCACTTGTAAATATCCAACTATTAAAT
194 ATTGCCATCATCATAGAATAATTTTGTCACC-TCTTTTCCAATTGTAAATATTCAACTATTAAAT
* *
2869399 TACATTTTTGTATAAAAAAAAAATTTGGTTACCAATTTTTTAACCTATGACCTATTTATTTACCC
258 TACATTTTTGTAT-AAAAAAAAATTTAGTTACCAATTTTTTAACCTATGACCTATTTATTTACTC
2869464 CACCATTTAAGCTATGTGTTATATATATATAGACACACACATGCATACATACACACATGTTTAAT
322 CACCATTTAAGCTATGT-TTATATATATATAGACACA-ACATG-ATACATA-A-ACAT-TTTAA-
* * *
2869529 ATGAATATATATTATTTTAAAATAATTAACAGATAATTAAATGAATTAAAATTAATTTTGGTATG
380 ATGAATATATATTATTTTAAAATAATTAATAGATGATTAAATAAATTAAAATTAATTTTGGTATG
** * * * *
2869594 TATAAATATTAATTTA-TT-AATAT-ATT-TTA-ATATAATTATTACAAATCTTT-TTTATTTCA
445 TAT-AATATTAATGGATTTCATTATCATTATTACA-CTAATT-TCA-AAATCTTTCCTT-TTTCA
* * * * * * *
2869653 TTTCTATAAA-AAGACTAATACAAATTATCTTTTATTATTACAATTGT--AG-TATAATTA-TTT
505 TTTCTCTAAACAAG-TTAATACACATTATGTTTGATTATTATAATTGTCAAGATA-AATTACTCT
* * *
2869713 TAA---AAAATTATTATTATTGATCTTATTTGGTAT-TTTAATTTTTTAA--ATATATAGTC-AT
568 CAATTTAAAA-TACTATTATTGATCTTATTTGGT-TCTTAAATTTTTTAATCA-AT-TAGTCAAT
*
2869771 ---TAATGTACAAAT--A
629 CAAAAAT-TACAAATCAA
* ** * ** * * *
2869784 -TCATGATAAA-ATATAAAA-TTATAG---TTGATAGTATAAGGAAAATT-TTC--TGTGGATAG
1 CTTAT-ATAAATATATAAAAGCCAAAGCCTTTGATAAAAAAAGG-AAATTGTCCAACGTGGATAG
* * *
2869840 -TTATATAATT--CAAAT-G-TAATTTTTTAAAAAAAATTTTCATTAAC-T-T-ATAAATT-ATT
64 CTTATATAATTGACATATGGATAA--TTTT--AAAAAATTATCATTATCTTCTAATAAATTAATT
* * * * *
2869896 ATATTTAT-TTTTA-TA--TA-ATTAAAT-A-TTTTATTTAAATTAATATTTAATGGTAATTAAA
125 ACATTTATGTTTTATTATTTACATTAAATCACTTTCAATTAAATTCATA-TTAAAGGTAA-TAAA
* * * * * *
2869954 AATTT-ATTG-CATCAT--TAAAATAATTTTGTCACCTGTTTT-AAATTGT-AATATTATAACCA
188 ATTTTAATTGCCATCATCATAGAATAATTTTGTCACCTCTTTTCCAATTGTAAATATT-CAA-CT
* * ** ***
2870013 ATT-AATTACAATATTTGTGTAAAGCAAAATTTAGTTGTGAATTTTTTAACCTATGACCTATTTA
251 ATTAAATTAC-ATTTTTGTATAAAAAAAAATTTAGTTACCAATTTTTTAACCTATGACCTATTTA
2870077 TTTACTCCA-C-------C-A--TTTATATATATATAG-----ACATG-T-C--AAAC-------
315 TTTACTCCACCATTTAAGCTATGTTTATATATATATAGACACAACATGATACATAAACATTTTAA
* *
2870115 ATGAATATATATTATTTTAAAATAATTAATAGATGATTAAATCAATTAAAATTAATTTTGGTACG
380 ATGAATATATATTATTTTAAAATAATTAATAGATGATTAAATAAATTAAAATTAATTTTGGTATG
* *
2870180 TATAATATCAAATGGATTTCATTATCATTATTACACTAATTTGAAAATCTTTCCTTTTTCATTTC
445 TATAATAT-TAATGGATTTCATTATCATTATTACACTAATTTCAAAATCTTTCCTTTTTCATTTC
* *
2870245 TCCCAAACAAGTTAATCCACATTATGTTTGATTATTATAATTGTCAAGTATAAATTACTCTCAAT
509 T-CTAAACAAGTTAATACACATTATGTTTGATTATTATAATTGTCAAG-ATAAATTACTCTCAAT
*
2870310 TTAAAATACTATTATTGATCTTGATTTGGTTCTTAAATTTGTTTTAATCAATTAGTCATTCAAAA
572 TTAAAATACTATTATTGATCTT-ATTTGGTTCTTAAA-TT-TTTTAATCAATTAGTCAATCAAAA
* *
2870375 ATTACAGATCAT
634 ATTACAAATCAA
* * *
2870387 CTTATATAAATTTATAAAAGCCAAAGCCTTTGAT-AAAAAAGGAAATTGTCCAACGTCGATAACT
1 CTTATATAAATATATAAAAGCCAAAGCCTTTGATAAAAAAAGGAAATTGTCCAACGTGGATAGCT
* * *
2870451 TATATAATTGACATGTGGACAATTTTAAAAAATTATCAATAATCTTCTAATAAATTAATTACATT
66 TATATAATTGACATATGGATAATTTTAAAAAATTATC-ATTATCTTCTAATAAATTAATTACATT
* *
2870516 TATGTTTTATTATTTACCTTAAATCACTCTCAATTAAATTCATATTAAAGGTAATAAAATTTTAA
130 TATGTTTTATTATTTACATTAAATCACTTTCAATTAAATTCATATTAAAGGTAATAAAATTTTAA
* * *
2870581 GTGCCATCATCATAGAATAATTTTGTTACCTTCTTTTCCAATTGTAAATATTCAACTCTTAAATT
195 TTGCCATCATCATAGAATAATTTTGTCACC-TCTTTTCCAATTGTAAATATTCAACTATTAAATT
***** * * *
2870646 ACATGTGCAAAAAAAAAAAAAAATAGTTGCCAATTACTAATTTTTTAACCTATGACCTATTTATT
259 ACAT-T-TTTGTATAAAAAAAAAT--TT---AGTTACCAATTTTTTAACCTATGACCTATTTATT
* * * * **** *** ****
2870711 TACTCCACCATTTAAGCTAT-ATTATATGTGTGT-G----TGTGTG-TGTGTATTTGTGTTTAAT
317 TACTCCACCATTTAAGCTATGTTTATATATATATAGACACAACATGATACATAAACAT-TTTAA-
* * *
2870769 ATGAAGATATATTATTTTAAAATAATTAACAGATGATTAAATGAATTAAAATTAATTTTGGTATG
380 ATGAATATATATTATTTTAAAATAATTAATAGATGATTAAATAAATTAAAATTAATTTTGGTATG
* * *
2870834 TATAATATCAAATGGATTTCATTACCATTATTACACTAATTTCAAAATCTTTCATTTTTCATTTC
445 TATAATAT-TAATGGATTTCATTATCATTATTACACTAATTTCAAAATCTTTCCTTTTTCATTTC
*
2870899 TCCCAAACAAGTTAATACACATTATGTTTGATTATTATAATTGTCAAG
509 T-CTAAACAAGTTAATACACATTATGTTTGATTATTATAATTGTCAAG
2870947 TGTCATAATC
Statistics
Matches: 1482, Mismatches: 196, Indels: 278
0.76 0.10 0.14
Matches are distributed among these distances:
585 5 0.00
586 68 0.05
587 2 0.00
588 22 0.01
589 37 0.02
590 11 0.01
591 3 0.00
592 5 0.00
593 6 0.00
595 18 0.01
596 16 0.01
597 3 0.00
598 11 0.01
599 4 0.00
600 2 0.00
601 6 0.00
602 8 0.01
603 5 0.00
604 10 0.01
605 3 0.00
606 5 0.00
607 7 0.00
608 19 0.01
609 7 0.00
610 20 0.01
611 5 0.00
612 9 0.01
613 2 0.00
614 9 0.01
615 10 0.01
616 5 0.00
617 2 0.00
619 8 0.01
620 73 0.05
621 30 0.02
622 36 0.02
623 3 0.00
624 33 0.02
625 28 0.02
626 24 0.02
627 14 0.01
628 1 0.00
629 7 0.00
630 10 0.01
631 7 0.00
632 41 0.03
633 3 0.00
634 11 0.01
635 6 0.00
636 15 0.01
637 8 0.01
639 13 0.01
640 6 0.00
641 2 0.00
642 16 0.01
643 11 0.01
644 6 0.00
645 4 0.00
646 7 0.00
647 1 0.00
648 4 0.00
649 11 0.01
651 16 0.01
652 15 0.01
654 176 0.12
655 5 0.00
656 3 0.00
657 11 0.01
658 38 0.03
659 23 0.02
660 12 0.01
661 62 0.04
662 8 0.01
663 2 0.00
667 1 0.00
668 14 0.01
669 145 0.10
670 61 0.04
671 6 0.00
672 68 0.05
673 2 0.00
674 30 0.02
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (645 bp):
CTTATATAAATATATAAAAGCCAAAGCCTTTGATAAAAAAAGGAAATTGTCCAACGTGGATAGCT
TATATAATTGACATATGGATAATTTTAAAAAATTATCATTATCTTCTAATAAATTAATTACATTT
ATGTTTTATTATTTACATTAAATCACTTTCAATTAAATTCATATTAAAGGTAATAAAATTTTAAT
TGCCATCATCATAGAATAATTTTGTCACCTCTTTTCCAATTGTAAATATTCAACTATTAAATTAC
ATTTTTGTATAAAAAAAAATTTAGTTACCAATTTTTTAACCTATGACCTATTTATTTACTCCACC
ATTTAAGCTATGTTTATATATATATAGACACAACATGATACATAAACATTTTAAATGAATATATA
TTATTTTAAAATAATTAATAGATGATTAAATAAATTAAAATTAATTTTGGTATGTATAATATTAA
TGGATTTCATTATCATTATTACACTAATTTCAAAATCTTTCCTTTTTCATTTCTCTAAACAAGTT
AATACACATTATGTTTGATTATTATAATTGTCAAGATAAATTACTCTCAATTTAAAATACTATTA
TTGATCTTATTTGGTTCTTAAATTTTTTAATCAATTAGTCAATCAAAAATTACAAATCAA
Found at i:2871565 original size:45 final size:46
Alignment explanation
Indices: 2871517--2871603 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
2871507 TATTTTTTCT
* * *
2871517 TTTTTTTAA-AATTAATTTATGAAATTTTTC-AATAGTTTGGTGGA
1 TTTTTTTAATAATTAATTCATGAAAATTATCAAATAGTTTGGTGGA
* *
2871561 TTTTTTTAATATTTAATTCCTGAAAATTATCAAATAGTTTGGT
1 TTTTTTTAATAATTAATTCATGAAAATTATCAAATAGTTTGGT
2871604 AGAATTCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 9 0.25
45 16 0.44
46 11 0.31
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (46 bp):
TTTTTTTAATAATTAATTCATGAAAATTATCAAATAGTTTGGTGGA
Found at i:2871761 original size:22 final size:22
Alignment explanation
Indices: 2871733--2871781 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
2871723 GAATTTTTAC
2871733 AAAATAAAAAT-AATAAAATAAT
1 AAAAT-AAAATCAATAAAATAAT
*
2871755 AAAATAAAATCAGTAAAATAAT
1 AAAATAAAATCAATAAAATAAT
2871777 AAAAT
1 AAAAT
2871782 TGAAAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (22 bp):
AAAATAAAATCAATAAAATAAT
Found at i:2871836 original size:18 final size:17
Alignment explanation
Indices: 2871799--2871844 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
2871789 ATAGTAAGCT
2871799 AAAAAAAATAAAATCAA
1 AAAAAAAATAAAATCAA
*
2871816 AAAATAAAATAAAATAGAA
1 AAAA-AAAATAAAAT-CAA
2871835 AAAGAAAAAT
1 AAA-AAAAAT
2871845 TTGTGATTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
18 10 0.40
19 10 0.40
20 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAAAAAATAAAATCAA
Found at i:2872733 original size:3 final size:3
Alignment explanation
Indices: 2872693--2872717 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2872683 AAAAATCATA
2872693 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
2872718 TACTATGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:2872763 original size:15 final size:14
Alignment explanation
Indices: 2872726--2872818 Score: 52
Period size: 15 Copynumber: 6.5 Consensus size: 14
2872716 TATACTATGG
2872726 TATAATA-AATACA
1 TATAATATAATACA
*
2872739 TAATAGTATAATAACA
1 T-ATAATATAAT-ACA
2872755 TATAATATAAGGTAC-
1 TATAATATAA--TACA
*
2872770 TATACTAT-ATAC-
1 TATAATATAATACA
* *
2872782 TATACTATGATA-A
1 TATAATATAATACA
2872795 TACTAATAATAATACA
1 TA-TAAT-ATAATACA
2872811 TTATAATA
1 -TATAATA
2872819 CATAATAGCA
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
12 11 0.17
13 6 0.09
14 9 0.14
15 24 0.38
16 11 0.17
17 3 0.05
ACGTcount: A:0.52, C:0.09, G:0.04, T:0.35
Consensus pattern (14 bp):
TATAATATAATACA
Found at i:2873994 original size:28 final size:28
Alignment explanation
Indices: 2873954--2874007 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
2873944 AAATTCATGT
* *
2873954 TTCATTGTAATCATGTAATATGTTATGC
1 TTCATTGTAATCATATAATAAGTTATGC
2873982 TTCATTGTAATCATATAATAAGTTAT
1 TTCATTGTAATCATATAATAAGTTAT
2874008 TTTTTGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.46
Consensus pattern (28 bp):
TTCATTGTAATCATATAATAAGTTATGC
Found at i:2875463 original size:33 final size:32
Alignment explanation
Indices: 2875426--2875530 Score: 89
Period size: 33 Copynumber: 3.4 Consensus size: 32
2875416 TTAGTTAATT
2875426 ATTTGTTGAAATTTATTTGGATTTTGGTTATCA
1 ATTTGTTGAAATTTATTTGGATTTTGGTTAT-A
**
2875459 ATTTGTTGAGTTTTA-TTGG---TT--TTAT-
1 ATTTGTTGAAATTTATTTGGATTTTGGTTATA
* * *
2875484 GTTTGTTGAAATTTGTTTAGATTTTGGTTATA
1 ATTTGTTGAAATTTATTTGGATTTTGGTTATA
*
2875516 TATTTGTTAAAATTT
1 -ATTTGTTGAAATTT
2875531 GTTGGTAATA
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
25 11 0.20
26 3 0.05
27 4 0.07
29 4 0.07
31 4 0.07
32 4 0.07
33 25 0.45
ACGTcount: A:0.23, C:0.01, G:0.18, T:0.58
Consensus pattern (32 bp):
ATTTGTTGAAATTTATTTGGATTTTGGTTATA
Found at i:2875507 original size:58 final size:58
Alignment explanation
Indices: 2875367--2875523 Score: 194
Period size: 58 Copynumber: 2.7 Consensus size: 58
2875357 TTTGTTATAA
* * * *
2875367 ATTTGTTGAAATTTGATTGGGTTTTGGTTACCAATGTGTTGAGTTTTTATTAGTTAATT
1 ATTTGTTGAAATTTGTTTGGATTTTGGTTATCAATTTGTTGAGTTTTTATTAGTT-ATT
* *
2875426 ATTTGTTGAAATTTATTTGGATTTTGGTTATCAATTTGTTGAG-TTTTATTGGTT-TT
1 ATTTGTTGAAATTTGTTTGGATTTTGGTTATCAATTTGTTGAGTTTTTATTAGTTATT
*
2875482 ATGTTTGTTGAAATTTGTTTAGATTTTGGTTAT-ATATTTGTT
1 A--TTTGTTGAAATTTGTTTGGATTTTGGTTATCA-ATTTGTT
2875524 AAAATTTGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
56 3 0.03
57 1 0.01
58 45 0.52
59 38 0.44
ACGTcount: A:0.21, C:0.02, G:0.20, T:0.57
Consensus pattern (58 bp):
ATTTGTTGAAATTTGTTTGGATTTTGGTTATCAATTTGTTGAGTTTTTATTAGTTATT
Found at i:2875522 original size:23 final size:23
Alignment explanation
Indices: 2875494--2875557 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
2875484 GTTTGTTGAA
*
2875494 ATTTGTTTAGATTTTGGTTATAT
1 ATTTGTTTAGATTTTGGTAATAT
* *
2875517 ATTTGTTAAAATTTGTTGGTAATAT
1 ATTTGTTTAGA-TT-TTGGTAATAT
*
2875542 ATTTTTATTAGATTTT
1 ATTTGT-TTAGATTTT
2875558 TTGTTGAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
23 9 0.28
24 4 0.12
25 16 0.50
26 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (23 bp):
ATTTGTTTAGATTTTGGTAATAT
Found at i:2875536 original size:58 final size:58
Alignment explanation
Indices: 2875427--2875536 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 58
2875417 TAGTTAATTA
* * **
2875427 TTTGTTGAAATTTATTTGGATTTTGGTTATCAATTTGTTGAGTTTTATTGGTTTTATG
1 TTTGTTGAAATTTATTTAGATTTTGGTTATCAATTTGTTAAAATTTATTGGTTTTATG
* *
2875485 TTTGTTGAAATTTGTTTAGATTTTGGTTAT-ATATTTGTTAAAATTTGTTGGT
1 TTTGTTGAAATTTATTTAGATTTTGGTTATCA-ATTTGTTAAAATTTATTGGT
2875537 AATATATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 1 0.02
58 44 0.98
ACGTcount: A:0.21, C:0.01, G:0.20, T:0.58
Consensus pattern (58 bp):
TTTGTTGAAATTTATTTAGATTTTGGTTATCAATTTGTTAAAATTTATTGGTTTTATG
Found at i:2876337 original size:25 final size:25
Alignment explanation
Indices: 2876309--2876356 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
2876299 ATCTAATATA
2876309 ATAAATATA-ACAAATATATAATTGC
1 ATAAATATATAC-AATATATAATTGC
* *
2876334 ATAATTATATTCAATATATAATT
1 ATAAATATATACAATATATAATT
2876357 TATTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (25 bp):
ATAAATATATACAATATATAATTGC
Found at i:2876668 original size:25 final size:26
Alignment explanation
Indices: 2876629--2876678 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
2876619 CCATAAACTT
*
2876629 AAAACTTATATTATAATATTT-TTAAA
1 AAAAATTATATTATAA-ATTTGTTAAA
2876655 AAAAATTATA-TATAAATTTGTTAA
1 AAAAATTATATTATAAATTTGTTAA
2876679 TCTATGAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 9 0.41
26 9 0.41
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
AAAAATTATATTATAAATTTGTTAAA
Found at i:2877654 original size:21 final size:21
Alignment explanation
Indices: 2877630--2877685 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
2877620 TGTTGTGCAA
2877630 TGCTTTCAATGCTTTTTCGTG
1 TGCTTTCAATGCTTTTTCGTG
2877651 TGCTTTCAATGCTTTTTCGTG
1 TGCTTTCAATGCTTTTTCGTG
2877672 TGCTTTCAATGCTT
1 TGCTTTCAATGCTT
2877686 CCCTTAATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.11, C:0.20, G:0.18, T:0.52
Consensus pattern (21 bp):
TGCTTTCAATGCTTTTTCGTG
Found at i:2885355 original size:22 final size:23
Alignment explanation
Indices: 2885330--2885388 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
2885320 ATACCTGCAC
2885330 AAACAAACACTAATT-AAAGAAA
1 AAACAAACACTAATTCAAAGAAA
* * *
2885352 AAACAAAAACCAATTCAAAGGAA
1 AAACAAACACTAATTCAAAGAAA
2885375 AAA-AAAC-CTAATTC
1 AAACAAACACTAATTC
2885389 GATTACCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 6 0.19
22 16 0.52
23 9 0.29
ACGTcount: A:0.64, C:0.17, G:0.05, T:0.14
Consensus pattern (23 bp):
AAACAAACACTAATTCAAAGAAA
Found at i:2886275 original size:21 final size:22
Alignment explanation
Indices: 2886251--2886300 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
2886241 ATAGCAAAAT
* *
2886251 TTTATATTCATTA-AATTTTAA
1 TTTATATTAATTATAATTTAAA
*
2886272 TTTATAGTAATTATAATTTAAA
1 TTTATATTAATTATAATTTAAA
*
2886294 TTAATAT
1 TTTATAT
2886301 ATTTTTCTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTATATTAATTATAATTTAAA
Found at i:2893303 original size:35 final size:35
Alignment explanation
Indices: 2893264--2893334 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
2893254 ATGGGTTTGT
*
2893264 TATTGTTAATGATTTTACAAGATATATATGAGTTA
1 TATTGTTAATGATTTTACAAGATATACATGAGTTA
* *
2893299 TATTGTTGATGATTTTACAAGATATACATGGGTTA
1 TATTGTTAATGATTTTACAAGATATACATGAGTTA
2893334 T
1 T
2893335 CTTCTTGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (35 bp):
TATTGTTAATGATTTTACAAGATATACATGAGTTA
Found at i:2897376 original size:12 final size:12
Alignment explanation
Indices: 2897337--2897377 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
2897327 GCATAAGGTT
2897337 CAAGATATTCCA
1 CAAGATATTCCA
* *
2897349 CAACATGTTCCA
1 CAAGATATTCCA
2897361 CAAGATATTCCA
1 CAAGATATTCCA
2897373 CAAGA
1 CAAGA
2897378 AAGTCTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.41, C:0.27, G:0.10, T:0.22
Consensus pattern (12 bp):
CAAGATATTCCA
Found at i:2915861 original size:21 final size:21
Alignment explanation
Indices: 2915837--2915887 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
2915827 GGATGCCTGT
2915837 ACCACATGAACAAATGCCCAC
1 ACCACATGAACAAATGCCCAC
* *
2915858 ACCA-ACTGAACGAATGCCCGC
1 ACCACA-TGAACAAATGCCCAC
2915879 ACCAACATG
1 ACC-ACATG
2915888 TTTGAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 3 0.12
23 1 0.04
ACGTcount: A:0.39, C:0.37, G:0.14, T:0.10
Consensus pattern (21 bp):
ACCACATGAACAAATGCCCAC
Found at i:2916796 original size:8 final size:8
Alignment explanation
Indices: 2916785--2916836 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 8
2916775 GATTTTTAAT
2916785 ATAAAAAA
1 ATAAAAAA
2916793 ATAAAAAA
1 ATAAAAAA
2916801 ATAATAAAA
1 ATAA-AAAA
*
2916810 AGAATTTAAAA
1 ATAA---AAAA
2916821 TATAAAAAA
1 -ATAAAAAA
2916830 ATAAAAA
1 ATAAAAA
2916837 TTTTAGATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 19 0.50
9 11 0.29
11 5 0.13
12 3 0.08
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (8 bp):
ATAAAAAA
Found at i:2917575 original size:15 final size:16
Alignment explanation
Indices: 2917555--2917585 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
2917545 AAAAAACAAA
2917555 AAAAATATT-TTTTAT
1 AAAAATATTATTTTAT
2917570 AAAAATATTATTTTAT
1 AAAAATATTATTTTAT
2917586 TAATAAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AAAAATATTATTTTAT
Found at i:2917671 original size:14 final size:14
Alignment explanation
Indices: 2917654--2917681 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2917644 TTTATTTTTC
2917654 AAATATATTTTATA
1 AAATATATTTTATA
2917668 AAATATATTTTATA
1 AAATATATTTTATA
2917682 CAGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:2920965 original size:16 final size:16
Alignment explanation
Indices: 2920936--2920967 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
2920926 TAAAAAGTTT
2920936 GACTCAAAATAAAAAA
1 GACTCAAAATAAAAAA
2920952 GACT-AAAATAAAAAA
1 GACTCAAAATAAAAAA
2920967 G
1 G
2920968 GAAAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.12
Consensus pattern (16 bp):
GACTCAAAATAAAAAA
Found at i:2921717 original size:17 final size:18
Alignment explanation
Indices: 2921691--2921733 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
2921681 GTGAAAGATG
* *
2921691 AGAGAAAACCAAAAA-AT
1 AGAGAGAACCAAAAACAA
2921708 AGAGAGAACCAAAAACAA
1 AGAGAGAACCAAAAACAA
2921726 AGAGAGAA
1 AGAGAGAA
2921734 AGAATGAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.67, C:0.12, G:0.19, T:0.02
Consensus pattern (18 bp):
AGAGAGAACCAAAAACAA
Found at i:2922654 original size:3 final size:3
Alignment explanation
Indices: 2922646--2922688 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
2922636 CCTTTTTGCT
2922646 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
2922689 GACTATTTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:2923095 original size:7 final size:7
Alignment explanation
Indices: 2923075--2923139 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
2923065 TGAATTTTTG
2923075 AAACCTT
1 AAACCTT
2923082 AAAACCTT
1 -AAACCTT
2923090 AAACC-T
1 AAACCTT
* *
2923096 AAA-ATA
1 AAACCTT
*
2923102 AAACCCT
1 AAACCTT
* *
2923109 ATACCTA
1 AAACCTT
*
2923116 AAACCTA
1 AAACCTT
2923123 AAACCTT
1 AAACCTT
2923130 AAACCTT
1 AAACCTT
2923137 AAA
1 AAA
2923140 GTGGAACACT
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
6 7 0.16
7 31 0.69
8 7 0.16
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (7 bp):
AAACCTT
Found at i:2923135 original size:21 final size:19
Alignment explanation
Indices: 2923081--2923135 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
2923071 TTTGAAACCT
*
2923081 TAAAACCTTAAACCTAAAA
1 TAAAACCCTAAACCTAAAA
*
2923100 TAAAACCCTATACCTAAAA
1 TAAAACCCTAAACCTAAAA
*
2923119 CCTAAAACCTTAAACCT
1 --TAAAACCCTAAACCT
2923136 TAAAGTGGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 17 0.57
21 13 0.43
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (19 bp):
TAAAACCCTAAACCTAAAA
Found at i:2931105 original size:100 final size:101
Alignment explanation
Indices: 2930933--2931172 Score: 245
Period size: 100 Copynumber: 2.4 Consensus size: 101
2930923 TGGCAAATAA
* * * ** *
2930933 ATATTTGCCTCTAGTTTGGTGATTAAAATCAAATATATTTATATCTAAAAATTTATTTTAAAGAT
1 ATATTTGCCTCTAGTTTCGTGATTAAAATAAAATATATTTACATCTAAAAATGCATTTTAAAGAC
* *
2930998 AAATTTA-T-TCTCCATAACTCATTTAAAAACTACT
66 AAATTTATTATCTCAATAACTCATTTAAAAACTAAT
* * * * * * *
2931032 ATATTTGCCTCTAGTTTCGTTATTAGAATTAAAATATATTTGCCTTTAAAAGTGCATTTTAAAGG
1 ATATTTGCCTCTAGTTTCGTGATTA-AAATAAAATATATTTACATCTAAAAATGCATTTTAAAGA
* *
2931097 CAGATTTATTATCTCAATAACTCTTTTAAAAACTAAT
65 CAAATTTATTATCTCAATAACTCATTTAAAAACTAAT
* *
2931134 ATA-TTGCCTCTAATTT-GATGATTAGGAATAAATATATAT
1 ATATTTGCCTCTAGTTTCG-TGATTA-AAATAAA-ATATAT
2931173 CTTTAAAATT
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
99 23 0.20
100 36 0.31
101 24 0.21
102 32 0.28
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (101 bp):
ATATTTGCCTCTAGTTTCGTGATTAAAATAAAATATATTTACATCTAAAAATGCATTTTAAAGAC
AAATTTATTATCTCAATAACTCATTTAAAAACTAAT
Found at i:2931532 original size:27 final size:28
Alignment explanation
Indices: 2931475--2931532 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
2931465 ATATGTACAA
2931475 AAATAATAGTAAAAACATATACACAAGTTG
1 AAATAATAGTAAAAACATATACAC-A-TTG
2931505 AAATAATAGTAAAAACATATACAC-TTG
1 AAATAATAGTAAAAACATATACACATTG
2931532 A
1 A
2931533 TTTCTACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 4 0.14
30 24 0.86
ACGTcount: A:0.57, C:0.10, G:0.09, T:0.24
Consensus pattern (28 bp):
AAATAATAGTAAAAACATATACACATTG
Found at i:2933390 original size:24 final size:24
Alignment explanation
Indices: 2933358--2933405 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2933348 AGCATACTGC
* *
2933358 ACTTTAATTCTCAGTTAAAAATTT
1 ACTTAAATTCTCAGTAAAAAATTT
*
2933382 ACTTAAATTCTTAGTAAAAAATTT
1 ACTTAAATTCTCAGTAAAAAATTT
2933406 TTAAAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (24 bp):
ACTTAAATTCTCAGTAAAAAATTT
Found at i:2937710 original size:25 final size:25
Alignment explanation
Indices: 2937680--2937737 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
2937670 TTTTATAAGG
2937680 ATTTTTAT-TTGAAAAT-ATTTTTTT
1 ATTTTTATATTG-AAATGATTTTTTT
2937704 ATCTTTT-TATTGAAATGATTTTTTT
1 AT-TTTTATATTGAAATGATTTTTTT
*
2937729 GTTTTTATA
1 ATTTTTATA
2937738 AATATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.66
Consensus pattern (25 bp):
ATTTTTATATTGAAATGATTTTTTT
Found at i:2938313 original size:13 final size:13
Alignment explanation
Indices: 2938295--2938320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2938285 AATTTAACTC
2938295 TCGCTGAAAAATT
1 TCGCTGAAAAATT
2938308 TCGCTGAAAAATT
1 TCGCTGAAAAATT
2938321 CATAAATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TCGCTGAAAAATT
Found at i:2945702 original size:22 final size:22
Alignment explanation
Indices: 2945677--2945719 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
2945667 GTGTTGCAAA
*
2945677 CCAAGAAAAGAAAGAAAAAAAG
1 CCAAAAAAAGAAAGAAAAAAAG
* *
2945699 CCAAAAAAATAGAGAAAAAAA
1 CCAAAAAAAGAAAGAAAAAAA
2945720 AGGAGAGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.74, C:0.09, G:0.14, T:0.02
Consensus pattern (22 bp):
CCAAAAAAAGAAAGAAAAAAAG
Found at i:2946293 original size:8 final size:8
Alignment explanation
Indices: 2946266--2946303 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
2946256 TTGAAAGAGG
2946266 GAGAGAATA
1 GAGAGAA-A
*
2946275 -AGAGAAT
1 GAGAGAAA
2946282 GAGAGAAA
1 GAGAGAAA
2946290 GAGAGAAA
1 GAGAGAAA
2946298 GAGAGA
1 GAGAGA
2946304 TTAGAGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.37, T:0.05
Consensus pattern (8 bp):
GAGAGAAA
Found at i:2948230 original size:32 final size:32
Alignment explanation
Indices: 2948194--2948260 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
2948184 TATGACACAT
* *
2948194 AATTTTCATATAAAATATGATACGAATATATA
1 AATTTTAATATAAAATATAATACGAATATATA
*** *
2948226 AATTTTAATATTTTATATAATACGAGTATATA
1 AATTTTAATATAAAATATAATACGAATATATA
2948258 AAT
1 AAT
2948261 CATTAGGTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (32 bp):
AATTTTAATATAAAATATAATACGAATATATA
Found at i:2948718 original size:3 final size:3
Alignment explanation
Indices: 2948710--2948743 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
2948700 CTCAAAAGTA
*
2948710 CAC CAC CAC CAC CAC CAC CA- CAC CAC TAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
2948744 GCAGCTGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.35, C:0.62, G:0.00, T:0.03
Consensus pattern (3 bp):
CAC
Found at i:2956812 original size:76 final size:75
Alignment explanation
Indices: 2956732--2956888 Score: 197
Period size: 76 Copynumber: 2.1 Consensus size: 75
2956722 GAATTTTGAA
* * * *
2956732 TTTTTTTTCATTTTTTTAACAAAGACTACAATTTCTATTTTAAAAGCATCATCTTTGTTAAATTC
1 TTTTTTTTCATATTTTCAACAAA-ACTACAATTTCTATCTTAAAAACATCATCTTTGTTAAATTC
2956797 TAAAAAATAATT
65 TAAAAAAT-ATT
* * * * * *
2956809 TTTTTTTTCATATTTTCAATAAAACTGCATTTTCTATCTTAAAAATATCATTTTTGTTGAATTCT
1 TTTTTTTTCATATTTTCAACAAAACTACAATTTCTATCTTAAAAACATCATCTTTGTTAAATTCT
*
2956874 TAAAAATATT
66 AAAAAATATT
2956884 TTTTT
1 TTTTT
2956889 ATGTTTTCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
75 8 0.12
76 41 0.59
77 20 0.29
ACGTcount: A:0.34, C:0.11, G:0.04, T:0.52
Consensus pattern (75 bp):
TTTTTTTTCATATTTTCAACAAAACTACAATTTCTATCTTAAAAACATCATCTTTGTTAAATTCT
AAAAAATATT
Found at i:2956995 original size:16 final size:18
Alignment explanation
Indices: 2956974--2957010 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
2956964 AGTCAAGATC
2956974 ACTTTCC-T-TCTAAATT
1 ACTTTCCATCTCTAAATT
*
2956990 ACTTTCCATCTCTTAATT
1 ACTTTCCATCTCTAAATT
2957008 ACT
1 ACT
2957011 ATGTTTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (18 bp):
ACTTTCCATCTCTAAATT
Found at i:2962089 original size:25 final size:25
Alignment explanation
Indices: 2962056--2962104 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
2962046 ATTTTTTAAC
2962056 CATCATATTGTTTTTCA-TTACTTG
1 CATCATATTGTTTTTCAGTTACTTG
* *
2962080 CATCTATATTTTTTTTTAGTTACTT
1 CATC-ATATTGTTTTTCAGTTACTT
2962105 TTAGATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 11 0.52
26 6 0.29
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.59
Consensus pattern (25 bp):
CATCATATTGTTTTTCAGTTACTTG
Found at i:2966007 original size:20 final size:20
Alignment explanation
Indices: 2965971--2966019 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 20
2965961 GCATATAAAC
*
2965971 AAGAAAATATCAAATAAAAGAA
1 AAGAAAA-ATCAAAT-AAACAA
2965993 AAGAAAAAT-AAATAAACAA
1 AAGAAAAATCAAATAAACAA
2966012 AAGAAAAA
1 AAGAAAAA
2966020 AGGTTTAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 13 0.50
20 4 0.15
21 2 0.08
22 7 0.27
ACGTcount: A:0.78, C:0.04, G:0.08, T:0.10
Consensus pattern (20 bp):
AAGAAAAATCAAATAAACAA
Found at i:2966020 original size:20 final size:22
Alignment explanation
Indices: 2965971--2966020 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
2965961 GCATATAAAC
* *
2965971 AAGAAAATATCAAATAAAAGAA
1 AAGAAAAAATCAAATAAAACAA
2965993 AAG-AAAAAT-AAAT-AAACAA
1 AAGAAAAAATCAAATAAAACAA
2966012 AAGAAAAAA
1 AAGAAAAAA
2966021 GGTTTAGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 8 0.32
20 9 0.36
21 5 0.20
22 3 0.12
ACGTcount: A:0.78, C:0.04, G:0.08, T:0.10
Consensus pattern (22 bp):
AAGAAAAAATCAAATAAAACAA
Found at i:2980779 original size:24 final size:22
Alignment explanation
Indices: 2980752--2980816 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
2980742 TTTTAATTTA
**
2980752 ATATAACAAATAAATTTTATCATT
1 ATATAACAAATAAA-TAAAT-ATT
*
2980776 ATATAATAAATAAATAAATATT
1 ATATAACAAATAAATAAATATT
*
2980798 ATATAACAAATTAA-AAATA
1 ATATAACAAATAAATAAATA
2980817 AAATTAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 5 0.14
22 15 0.42
23 3 0.08
24 13 0.36
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
ATATAACAAATAAATAAATATT
Found at i:2981804 original size:144 final size:144
Alignment explanation
Indices: 2981628--2981979 Score: 386
Period size: 144 Copynumber: 2.5 Consensus size: 144
2981618 TCAAGGTCGG
* * *
2981628 ATTTTCATGAAACTTTTAAGATTTTACTTTCATAATATTTCATGATTTTTGGTGCATTTGAAATT
1 ATTTTCATGAAACTTTTTAGATTTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATC
* * * *
2981693 ACAGCAATATCCT-GAAAGGTATAAAATTACGAAAATAC-CTTCTCAGAGTATTTTCATAATTTG
66 ACAGCAAT-GCCTCGAAAGGTATAAAATTACCAAAATACTCAT-TAAGAGTATTTTCATAATTTG
* * *
2981756 GCATTCTCGAACTTGA
129 ACATTATCGAACTCGA
* * *
2981772 ATTTTCATGAAACTTTTTGGATTTTAATTTCATAATATGTCATGATTTTTTGTGCATTTGAAATC
1 ATTTTCATGAAACTTTTTAGATTTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATC
* * * * * * * *
2981837 ATAGCAGTGCCTCGGAAGGTGTGAAATTACCAAATTACTCATTAAGGGTATTTTCGTAATTTGAC
66 ACAGCAATGCCTCGAAAGGTATAAAATTACCAAAATACTCATTAAGAGTATTTTCATAATTTGAC
* * *
2981902 CTTATTGAGCTCGA
131 ATTATCGAACTCGA
* ** * * * *
2981916 ATTTTCATGAAATTTTTTAGACCTCAATTTTATAATATTTCAAGATTTTTGGTGC-TTTAAAATC
1 ATTTTCATGAAACTTTTTAGATTTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATC
2981980 TCAAAACTGA
Statistics
Matches: 172, Mismatches: 34, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
143 11 0.06
144 159 0.92
145 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (144 bp):
ATTTTCATGAAACTTTTTAGATTTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATC
ACAGCAATGCCTCGAAAGGTATAAAATTACCAAAATACTCATTAAGAGTATTTTCATAATTTGAC
ATTATCGAACTCGA
Found at i:2989005 original size:51 final size:51
Alignment explanation
Indices: 2988905--2989112 Score: 291
Period size: 49 Copynumber: 4.1 Consensus size: 51
2988895 TTTAAAAGTT
*
2988905 CTTGTTTGAAAATGGCTCCCCTTAAACAGAGGCTTTGACACTTTTAAAAAAA
1 CTTGTTTGAAAATGGCTCCCCTTAAACAAAGGCTTTGACAC-TTTAAAAAAA
*
2988957 CTTGTTTGAAAATGGCTTCCC-TAAACAAAGGCTTTGACACTTT-AAAAAA
1 CTTGTTTGAAAATGGCTCCCCTTAAACAAAGGCTTTGACACTTTAAAAAAA
* *
2989006 CTTGCTTGAAAATGGCTTTCCC-TAAACAAA-GC-TTGACACTTTAAAAAAA
1 CTTGTTTGAAAATGGC-TCCCCTTAAACAAAGGCTTTGACACTTTAAAAAAA
* * * *
2989055 CTTGTTTAAAAATGGCTCCCCTTAAACAAAGGCTTTAACACTTTTAAAAAT
1 CTTGTTTGAAAATGGCTCCCCTTAAACAAAGGCTTTGACACTTTAAAAAAA
2989106 CTTGTTT
1 CTTGTTT
2989113 TCTTTTCTCT
Statistics
Matches: 142, Mismatches: 9, Indels: 11
0.88 0.06 0.07
Matches are distributed among these distances:
48 14 0.10
49 51 0.36
50 18 0.13
51 39 0.27
52 20 0.14
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (51 bp):
CTTGTTTGAAAATGGCTCCCCTTAAACAAAGGCTTTGACACTTTAAAAAAA
Found at i:3008046 original size:20 final size:20
Alignment explanation
Indices: 3008021--3008060 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
3008011 TTGGTACAAA
3008021 GTAGGATCGCACCTAGTGCC
1 GTAGGATCGCACCTAGTGCC
3008041 GTAGGATCGCACCTAGTGCC
1 GTAGGATCGCACCTAGTGCC
3008061 TGGCTAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (20 bp):
GTAGGATCGCACCTAGTGCC
Found at i:3009778 original size:11 final size:11
Alignment explanation
Indices: 3009762--3009786 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3009752 ATTATGCCCA
3009762 TTTTTTCTTTT
1 TTTTTTCTTTT
3009773 TTTTTTCTTTT
1 TTTTTTCTTTT
3009784 TTT
1 TTT
3009787 GCTTTTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:3009911 original size:18 final size:18
Alignment explanation
Indices: 3009877--3009910 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3009867 GCTAGCTTGA
3009877 CTTTTTCTTTTTCTTTTC
1 CTTTTTCTTTTTCTTTTC
*
3009895 CTTTTT-TTTTTATTTT
1 CTTTTTCTTTTTCTTTT
3009911 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
CTTTTTCTTTTTCTTTTC
Found at i:3011775 original size:22 final size:22
Alignment explanation
Indices: 3011736--3011778 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
3011726 TTCTTCTCTC
3011736 TTTTAGTTTTTAGTTTTAGTTT
1 TTTTAGTTTTTAGTTTTAGTTT
*
3011758 TTTTATTTCTTTAG-TTTAGTT
1 TTTTAGTT-TTTAGTTTTAGTT
3011779 ATTGGCTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.14, C:0.02, G:0.12, T:0.72
Consensus pattern (22 bp):
TTTTAGTTTTTAGTTTTAGTTT
Found at i:3018055 original size:18 final size:18
Alignment explanation
Indices: 3018032--3018124 Score: 61
Period size: 18 Copynumber: 5.3 Consensus size: 18
3018022 GTTCTTGATG
3018032 TATTTGAGGTAGAGGATA
1 TATTTGAGGTAGAGGATA
*
3018050 TATTTGA-G--GATGATA
1 TATTTGAGGTAGAGGATA
* *
3018065 TATTTGTA-GTGGGGGATA
1 TATTTG-AGGTAGAGGATA
* * *
3018083 AATTT-ATGGTAAATGATA
1 TATTTGA-GGTAGAGGATA
* *
3018101 TATTTGAGGTGGAAGATA
1 TATTTGAGGTAGAGGATA
3018119 TATTTG
1 TATTTG
3018125 TGGTGGATAA
Statistics
Matches: 57, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
15 12 0.21
16 3 0.05
17 1 0.02
18 40 0.70
19 1 0.02
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (18 bp):
TATTTGAGGTAGAGGATA
Found at i:3018129 original size:18 final size:18
Alignment explanation
Indices: 3018061--3018131 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
3018051 ATTTGAGGAT
* **
3018061 GATATATTTGTAGTGGGG
1 GATATATTTGTGGTGGAA
* * *
3018079 GATAAATTTATGGT-AAA
1 GATATATTTGTGGTGGAA
*
3018096 TGATATATTTGAGGTGGAA
1 -GATATATTTGTGGTGGAA
3018115 GATATATTTGTGGTGGA
1 GATATATTTGTGGTGGA
3018132 TAATAACTAT
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
18 38 0.95
19 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (18 bp):
GATATATTTGTGGTGGAA
Found at i:3022580 original size:612 final size:610
Alignment explanation
Indices: 3021382--3022602 Score: 1939
Period size: 612 Copynumber: 2.0 Consensus size: 610
3021372 AACTCTTCAT
* *
3021382 GTGGTGGCATGCTTGCTATTTTGTATAAAAACAAAATAAACATATATTTAGAAATATTAATGTTG
1 GTGGTGACATGCTTGCTATTTTGTATAAAAACAAAATAAACATATATTTAGAAATATTAATGTTA
* * * *
3021447 CTTATTTCATCATTAAAAATTGAATCTACATTAGATTTTTTAATTTTTAGTTTTTAATCTTAAAA
66 CTTATTCCATCATTAAAAATTGAATCTACATTAGAATTTTTAATTTTTAATTTTTAATATTAAAA
*
3021512 CTAATAGATCATAAAACGCTAAATTTATTAAGTAATTTAATCTTTTTGATATACTAATTGATGTA
131 CTAATAGATCATAAAACGCTAAATTTATTAAGTAATTTAATCTTTTTGATATACTAATCGATGTA
* **
3021577 AAAAAAATTTTATCTCAAATTACTTTCAATATATTATATAATCAATAGAATATTCAATAATTATG
196 AAAAAAATTTTATCACAAATTACTTTCAATATATTATATAATCAATAGAATATTCAATAATTACA
*
3021642 TAAAAATAAAAAAAAATTAATAAGAATTAATTTAATAGCAAAAGAATTGACAACAATAAAAAAAA
261 CAAAAATAAAAAAAAATTAATAAGAATTAATTTAATAGCAAAAGAATTGACAACAATAAAAAAAA
*
3021707 CCAAAACAACAAAACAATTATTAAATTTCAAATATAAAATTACAAATTAATAAATAAAAAAATCA
326 CCAAAACAACAAAAAAATTATTAAATTTCAAATATAAAATTACAAATTAATAAATAAAAAAATCA
*
3021772 AAATATAACATTTAATTTTAATTATTTTTCATCTAACTTATACAAAAAATTAAAATTTTTTATCT
391 AAATATAACATTTAATTTTAATTATTTTTCATCTAACTTATACAAAAAATTAAAATTTTTCATCT
* * * *
3021837 AAAATCCTTTTATATATCATATTAAATTATTAATTTCTCAATTTTTTCAATTATAAATTCTCAAT
456 AAAATCCCTATATATATCATATTAAATTATTAATCTCTCAATTTTTTCAATTATAAAATCTCAAT
* *
3021902 CCCTCTAACTAAATTTTATCTAAAACAATTTTAAAAAATACAAAATTTTAAATTTATATTTTAAT
521 CCCTCCAACTAAATTTTATCTAAAACAAGTTTAAAAAATACAAAATTTTAAATTTATATTTTAAT
3021967 AAAATTAATTACAAAATTAAATAAC
586 AAAATTAATTACAAAATTAAATAAC
* *
3021992 GTGGTGACATGCTTGCTATTTTGTATAAAAATAAAATAAACTTATATTTAGAAATATTAATGTTA
1 GTGGTGACATGCTTGCTATTTTGTATAAAAACAAAATAAACATATATTTAGAAATATTAATGTTA
* * * *
3022057 TTTATTCCATTTATTAAAAATTGAATCTACATTA-AATTTTTAATTTTTAATTTTTTATATTAAG
66 CTTATTCCA-TCATTAAAAATTGAATCTACATTAGAATTTTTAATTTTTAATTTTTAATATTAAA
* * * *
3022121 AGTAATAGATCGTAAAATGCTAAATTTGTTAAGTAATTTAATCTTTTT-ATATACTAATCGATGT
130 ACTAATAGATCATAAAACGCTAAATTTATTAAGTAATTTAATCTTTTTGATATACTAATCGATGT
* * * *
3022185 AAAAATATTTTTATCACAAATTATTTTTAATATATTATATAAT-AATAGAATATTCAATAATTAC
195 AAAAAAAATTTTATCACAAATTACTTTCAATATATTATATAATCAATAGAATATTCAATAATTAC
* * *
3022249 ACAAAAATAAAAATAAATTAATGAGAATTAATTTAATAGCAAAAGAATTGACAACAAT-AAAAAT
260 ACAAAAATAAAAAAAAATTAATAAGAATTAATTTAATAGCAAAAGAATTGACAACAATAAAAAAA
* *
3022313 ACCAAAACAACAAAAAAATTATTAAATTTCAAATATAAAATTATAAATTAATAAATAACAAAATC
325 ACCAAAACAACAAAAAAATTATTAAATTTCAAATATAAAATTACAAATTAATAAATAAAAAAATC
* *
3022378 AAAATATAATATTTAATTTTAATTATTTTTCATCTAACTTGTACAAAAAAATTTATTAAAATTTT
390 AAAATATAACATTTAATTTTAATTATTTTTCATCTAACTTATAC--AAAAA---ATTAAAATTTT
* *
3022443 TCATCTAAAATCCCTATATATTTCATATTAAATTATTAATCTCTTAATTTTTTCAATTATAAAAT
450 TCATCTAAAATCCCTATATATATCATATTAAATTATTAATCTCTCAATTTTTTCAATTATAAAAT
* *
3022508 CTCAATCCCTCCAACTAAATTTTATTTAAGA-AAGTTTAAAAAATTACAAAATTTTAAATTTATA
515 CTCAATCCCTCCAACTAAATTTTATCTAAAACAAGTTTAAAAAA-TACAAAATTTTAAATTTATA
*
3022572 TTTTAATAAAATTAATTATAAAATTAAATAA
579 TTTTAATAAAATTAATTACAAAATTAAATAA
3022603 AAACTACCTA
Statistics
Matches: 559, Mismatches: 45, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
607 109 0.19
608 74 0.13
609 58 0.10
610 137 0.25
611 34 0.06
612 147 0.26
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (610 bp):
GTGGTGACATGCTTGCTATTTTGTATAAAAACAAAATAAACATATATTTAGAAATATTAATGTTA
CTTATTCCATCATTAAAAATTGAATCTACATTAGAATTTTTAATTTTTAATTTTTAATATTAAAA
CTAATAGATCATAAAACGCTAAATTTATTAAGTAATTTAATCTTTTTGATATACTAATCGATGTA
AAAAAAATTTTATCACAAATTACTTTCAATATATTATATAATCAATAGAATATTCAATAATTACA
CAAAAATAAAAAAAAATTAATAAGAATTAATTTAATAGCAAAAGAATTGACAACAATAAAAAAAA
CCAAAACAACAAAAAAATTATTAAATTTCAAATATAAAATTACAAATTAATAAATAAAAAAATCA
AAATATAACATTTAATTTTAATTATTTTTCATCTAACTTATACAAAAAATTAAAATTTTTCATCT
AAAATCCCTATATATATCATATTAAATTATTAATCTCTCAATTTTTTCAATTATAAAATCTCAAT
CCCTCCAACTAAATTTTATCTAAAACAAGTTTAAAAAATACAAAATTTTAAATTTATATTTTAAT
AAAATTAATTACAAAATTAAATAAC
Found at i:3024875 original size:41 final size:39
Alignment explanation
Indices: 3024816--3024937 Score: 106
Period size: 41 Copynumber: 2.9 Consensus size: 39
3024806 ATTATAATTT
*
3024816 ATTTATCATTATTATTATTTTTTATCTTGTAATATTTTTTTGG
1 ATTTATC-TTATT-TTATTTTTTATCTTGT--TATTTTTTTGC
*
3024859 ATTTATCTTATTTTATTTTTAATTATC-TGTTATTTTTTTTC
1 ATTTATCTTATTTTA-TTTT--TTATCTTGTTATTTTTTTGC
*
3024900 ATTTATCTGATTTT-TTTGTTTATC-TGATTATTCTTTTT
1 ATTTATCTTATTTTATTT-TTTATCTTG-TTATT-TTTTT
3024938 TTTTTTTTGG
Statistics
Matches: 70, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
38 7 0.10
39 8 0.11
40 6 0.09
41 25 0.36
42 9 0.13
43 10 0.14
44 5 0.07
ACGTcount: A:0.20, C:0.07, G:0.06, T:0.68
Consensus pattern (39 bp):
ATTTATCTTATTTTATTTTTTATCTTGTTATTTTTTTGC
Found at i:3024891 original size:22 final size:21
Alignment explanation
Indices: 3024866--3024916 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
3024856 TGGATTTATC
*
3024866 TTATTTTATTTTTAATTATCTG
1 TTATTTT-TTTTCAATTATCTG
*
3024888 TTATTTTTTTTCATTTATCTG
1 TTATTTTTTTTCAATTATCTG
3024909 --ATTTTTTT
1 TTATTTTTTT
3024917 GTTTATCTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 8 0.30
21 12 0.44
22 7 0.26
ACGTcount: A:0.18, C:0.06, G:0.04, T:0.73
Consensus pattern (21 bp):
TTATTTTTTTTCAATTATCTG
Found at i:3024905 original size:21 final size:20
Alignment explanation
Indices: 3024813--3024938 Score: 68
Period size: 20 Copynumber: 6.2 Consensus size: 20
3024803 TATATTATAA
* *
3024813 TTTATTTATC-ATTATTATTA
1 TTTATTTATCTGTTATT-TTT
3024833 TTT-TTTATCTTGTAATATTTTT
1 TTTATTTATC-TGT--TATTTTT
*
3024855 TTGGATTTATC--TTATTTTATT
1 TT-TATTTATCTGTTA-TTT-TT
*
3024876 TTTAATTATCTGTTATTTTT
1 TTTATTTATCTGTTATTTTT
3024896 TTTCATTTATCTG--A-TTTT
1 TTT-ATTTATCTGTTATTTTT
*
3024914 TTTGTTTATCTGATTATTCTTT
1 TTTATTTATCTG-TTATT-TTT
3024936 TTT
1 TTT
3024939 TTTTTTTGGG
Statistics
Matches: 83, Mismatches: 7, Indels: 30
0.69 0.06 0.25
Matches are distributed among these distances:
17 8 0.10
18 7 0.08
19 9 0.11
20 18 0.22
21 18 0.22
22 13 0.16
23 4 0.05
24 6 0.07
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTATTTATCTGTTATTTTT
Found at i:3024913 original size:18 final size:17
Alignment explanation
Indices: 3024892--3024928 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
3024882 TATCTGTTAT
3024892 TTTTTTTCATTTATCTGA
1 TTTTTTT-ATTTATCTGA
*
3024910 TTTTTTTGTTTATCTGA
1 TTTTTTTATTTATCTGA
3024927 TT
1 TT
3024929 ATTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.14, C:0.08, G:0.08, T:0.70
Consensus pattern (17 bp):
TTTTTTTATTTATCTGA
Found at i:3025815 original size:13 final size:13
Alignment explanation
Indices: 3025770--3025829 Score: 77
Period size: 13 Copynumber: 4.6 Consensus size: 13
3025760 CCGCTCCAGG
*
3025770 TTTTATTTTTTTGA
1 TTTTATTTGTTT-A
* *
3025784 ATTTATTTATTTA
1 TTTTATTTGTTTA
3025797 -TTTATTTGTTTA
1 TTTTATTTGTTTA
3025809 TTTTATTTGTTTA
1 TTTTATTTGTTTA
3025822 TTTTATTT
1 TTTTATTT
3025830 ATTAGATTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
12 11 0.26
13 21 0.50
14 10 0.24
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (13 bp):
TTTTATTTGTTTA
Found at i:3025848 original size:4 final size:4
Alignment explanation
Indices: 3025784--3025832 Score: 62
Period size: 4 Copynumber: 11.8 Consensus size: 4
3025774 ATTTTTTTGA
* *
3025784 ATTT ATTT ATTT ATTT ATTT GTTT ATTTT ATTT GTTT ATTTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT A-TTT ATTT ATT
3025833 AGATTAGGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 31 0.79
5 8 0.21
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:3025872 original size:11 final size:11
Alignment explanation
Indices: 3025856--3025912 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
3025846 TTAATATTCT
3025856 TTTTATCTTTA
1 TTTTATCTTTA
*
3025867 TTTTATTTTTA
1 TTTTATCTTTA
*
3025878 TTTT-TGTTTTA
1 TTTTAT-CTTTA
*
3025889 CTTT-TCTTTA
1 TTTTATCTTTA
3025899 TTTTAT-TTTA
1 TTTTATCTTTA
3025909 TTTT
1 TTTT
3025913 TTATTTTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
10 16 0.40
11 24 0.60
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTATCTTTA
Found at i:3025873 original size:5 final size:5
Alignment explanation
Indices: 3025856--3025949 Score: 70
Period size: 5 Copynumber: 18.4 Consensus size: 5
3025846 TTAATATTCT
* *
3025856 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTT- CTTTA TTTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA
* *
3025904 TTTTA TTTT- TTAT- TTTTA -TTTA TTTTCA CTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TT
3025950 ATTCTATTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 16
0.75 0.08 0.16
Matches are distributed among these distances:
4 13 0.18
5 35 0.48
6 21 0.29
7 4 0.05
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:3025876 original size:6 final size:6
Alignment explanation
Indices: 3025855--3025941 Score: 58
Period size: 6 Copynumber: 14.7 Consensus size: 6
3025845 TTTAATATTC
* * *
3025855 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTCTT TATTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA T-TTTTA
* *
3025904 -TTTTA TTTTTTA TTTTTA --TTTA TTTTCA CTTTTA TTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
3025942 GTTTTATTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
4 4 0.06
5 13 0.21
6 31 0.50
7 10 0.16
8 4 0.06
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:3025877 original size:17 final size:17
Alignment explanation
Indices: 3025855--3025941 Score: 67
Period size: 17 Copynumber: 5.2 Consensus size: 17
3025845 TTTAATATTC
3025855 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
3025872 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
3025889 -CTTT-TCTTTATTTTA
1 TTTTTATCTTTATTTTA
*
3025904 -TTTTATTTTTTATTTT-
1 TTTTTA-TCTTTATTTTA
*
3025920 TATTTAT-TTTCACTTTTA
1 TTTTTATCTTT-A-TTTTA
3025938 TTTT
1 TTTT
3025942 GTTTTATTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
15 15 0.27
16 5 0.09
17 32 0.58
18 3 0.05
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.78
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:3026058 original size:59 final size:58
Alignment explanation
Indices: 3025982--3026368 Score: 412
Period size: 59 Copynumber: 6.7 Consensus size: 58
3025972 ATAAAAATAT
* * * * *
3025982 ATATTTTTGGGGGAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCAAAAAA
*** * * *
3026040 AGGGCTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAGGTTTCCAAAAA
1 A-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTTCAAAAAA
* * *
3026100 ATATTTTTGGGGAAAAGTTGAAAGTATCAA--TT--TTAAAAATAAATTTTCAAAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTC--AAAAAA
* * *
3026156 AAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAGA
1 ATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTTCAAAAAA
* * *
3026216 ATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTT---AATAAATTTTCAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCAAAAAA
* * * *
3026271 ATAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCAAAAGA
1 AT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCAAAAAA
* *
3026331 ATATTTTTG-GAAAAAGTTAAAAGTATCAATTTTCCTTG
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
3026369 CACAAAAAAA
Statistics
Matches: 271, Mismatches: 43, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
54 6 0.02
55 20 0.07
56 10 0.04
57 86 0.32
58 7 0.03
59 94 0.35
60 34 0.13
61 7 0.03
62 7 0.03
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (58 bp):
ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCAAAAAA
Found at i:3026195 original size:116 final size:115
Alignment explanation
Indices: 3025982--3026363 Score: 515
Period size: 116 Copynumber: 3.3 Consensus size: 115
3025972 ATAAAAATAT
* **
3025982 ATATTTTTGGGGGAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC--AAAAAAAGGGC
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAA---TT-TTAAAAATAAATTTTCAAAAAAAAAAAG-
* *
3026045 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAGGTTTCCAAAAA
61 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAA
3026100 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTAAAAATAAATTTTCAAAAAAAAAAAGTTTTT
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTAAAAATAAATTTTCAAAAAAAAAAAG-TTTT
*
3026165 GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAGA
65 GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAA
* ***
3026216 ATATTTTTGGGGAAAAGTTGAAAATATCAATTTTCCTTAATAAATTTTCAAAAAAATAAAA-TTT
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT-AAAAATAAATTTTCAAAAAAA-AAAAGTTT
* *
3026280 TGAGGAAAAGTTGAAAGTATCAATTTTCCTCG-AAATTAAAGTTT-CAAAAGA
64 TGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAA-A
* *
3026331 ATATTTTT-GGAAAAAGTTAAAAGTATCAATTTT
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
3026364 CCTTGCACAA
Statistics
Matches: 242, Mismatches: 17, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
114 42 0.17
115 22 0.09
116 127 0.52
117 18 0.07
118 33 0.14
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (115 bp):
ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTAAAAATAAATTTTCAAAAAAAAAAAGTTTTG
AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAA
Found at i:3027337 original size:80 final size:80
Alignment explanation
Indices: 3027247--3027409 Score: 317
Period size: 80 Copynumber: 2.0 Consensus size: 80
3027237 CCTATAGATA
3027247 GAGCCATCACTCTTCCCTTTTAGAATTGACCATAATCATAAGATTCATCACTTTTACTTTGTGTG
1 GAGCCATCACTCTTCCCTTTTAGAATTGACCATAATCATAAGATTCATCACTTTTACTTTGTGTG
3027312 ATGTTTAAATTTACT
66 ATGTTTAAATTTACT
*
3027327 GAGCCATCACTCTTCCCTTTTAGAATTGACCATAATCATAAGATTCATCCCTTTTACTTTGTGTG
1 GAGCCATCACTCTTCCCTTTTAGAATTGACCATAATCATAAGATTCATCACTTTTACTTTGTGTG
3027392 ATGTTTAAATTTACT
66 ATGTTTAAATTTACT
3027407 GAG
1 GAG
3027410 TTATTATTCT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.40
Consensus pattern (80 bp):
GAGCCATCACTCTTCCCTTTTAGAATTGACCATAATCATAAGATTCATCACTTTTACTTTGTGTG
ATGTTTAAATTTACT
Found at i:3031992 original size:35 final size:34
Alignment explanation
Indices: 3031953--3032069 Score: 121
Period size: 35 Copynumber: 3.4 Consensus size: 34
3031943 AAACCTGATT
3031953 ATTTTCATTCTTTGACTTACAGTTCAATTTCAATC
1 ATTTTCATTCTTTGAC-TACAGTTCAATTTCAATC
* ** *
3031988 ATTTTTATTCTTCAACT-CATGCTTCAA-TTCTAGTC
1 ATTTTCATTCTTTGACTACA-G-TTCAATTTC-AATC
* *
3032023 ATTTTCATTCTTTGACTAGCGGTTCAATCTCAATC
1 ATTTTCATTCTTTGACTA-CAGTTCAATTTCAATC
3032058 ATTTTCATTCTT
1 ATTTTCATTCTT
3032070 CGGCTAGTTG
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
33 2 0.03
34 5 0.08
35 55 0.83
36 3 0.05
37 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.07, T:0.49
Consensus pattern (34 bp):
ATTTTCATTCTTTGACTACAGTTCAATTTCAATC
Found at i:3032083 original size:35 final size:34
Alignment explanation
Indices: 3031953--3032086 Score: 110
Period size: 35 Copynumber: 3.8 Consensus size: 34
3031943 AAACCTGATT
* ** *
3031953 ATTTTCATTCTTTGACTTACAGTTCAATTTCAATC
1 ATTTTCATTCTTCGAC-TAGTGTTCAATCTCAATC
* * *
3031988 ATTTTTATTCTTCAACTCA-TGCTTCAAT-TCTAGTC
1 ATTTTCATTCTTCGACT-AGTG-TTCAATCTC-AATC
* *
3032023 ATTTTCATTCTTTGACTAGCGGTTCAATCTCAATC
1 ATTTTCATTCTTCGACTAG-TGTTCAATCTCAATC
*
3032058 ATTTTCATTCTTCGGCTAGTTGTTCAATC
1 ATTTTCATTCTTCGACTAG-TGTTCAATC
3032087 CTAGTCATAT
Statistics
Matches: 79, Mismatches: 14, Indels: 12
0.75 0.13 0.11
Matches are distributed among these distances:
34 5 0.06
35 71 0.90
36 3 0.04
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.47
Consensus pattern (34 bp):
ATTTTCATTCTTCGACTAGTGTTCAATCTCAATC
Found at i:3041764 original size:9 final size:9
Alignment explanation
Indices: 3041742--3041780 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
3041732 TTTTTGTTAA
3041742 AATAACAAAT
1 AATAA-AAAT
3041752 -ATAAAAAT
1 AATAAAAAT
3041760 AAT-AAAAT
1 AATAAAAAT
3041768 AATAAAAAT
1 AATAAAAAT
3041777 AATA
1 AATA
3041781 GGACGAGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 12 0.44
9 15 0.56
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (9 bp):
AATAAAAAT
Found at i:3041774 original size:17 final size:16
Alignment explanation
Indices: 3041748--3041780 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
3041738 TTAAAATAAC
3041748 AAATATAAAAATAATA
1 AAATATAAAAATAATA
3041764 AAATAATAAAAATAATA
1 AAAT-ATAAAAATAATA
3041781 GGACGAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATATAAAAATAATA
Found at i:3042135 original size:24 final size:25
Alignment explanation
Indices: 3042103--3042150 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
3042093 TTATCAATGA
*
3042103 TTATCA-TTTACAAAGAGTGTTATT
1 TTATCATTTTACAAAGAATGTTATT
* *
3042127 TTATTATTTTAGAAAGAATGTTAT
1 TTATCATTTTACAAAGAATGTTAT
3042151 AATAAATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (25 bp):
TTATCATTTTACAAAGAATGTTATT
Found at i:3052217 original size:6 final size:6
Alignment explanation
Indices: 3052208--3052291 Score: 60
Period size: 6 Copynumber: 14.0 Consensus size: 6
3052198 TAATAATACC
* * * * * * *
3052208 AGTAAT AGTAGT AGTAGT AGTAGT AGTAGT AGTAGT AGTAGT AGTAGT
1 AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT
* * * * *
3052256 AGTAAT AATAAT AATAAT AATAAT AATAAT AATAAT
1 AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT
3052292 TATTATTATT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 75 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (6 bp):
AGTAAT
Found at i:3052219 original size:3 final size:3
Alignment explanation
Indices: 3052208--3052259 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
3052198 TAATAATACC
*
3052208 AGT AAT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
3052256 AGT A
1 AGT A
3052260 ATAATAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
AGT
Found at i:3052264 original size:3 final size:3
Alignment explanation
Indices: 3052258--3052291 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
3052248 GTAGTAGTAG
3052258 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
3052292 TATTATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:3052296 original size:3 final size:3
Alignment explanation
Indices: 3052290--3052327 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
3052280 AATAATAATA
3052290 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
3052328 CGAGTTAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:3052841 original size:15 final size:14
Alignment explanation
Indices: 3052817--3052851 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
3052807 GAAAAAAACA
*
3052817 TATTTTTAATTTAT
1 TATTTTTAATTTAG
3052831 TATTATTTAATTTAG
1 TATT-TTTAATTTAG
3052846 TATTTT
1 TATTTT
3052852 AGGTTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
TATTTTTAATTTAG
Found at i:3055541 original size:4 final size:4
Alignment explanation
Indices: 3055532--3055557 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
3055522 TAATTTAATC
3055532 TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TT
3055558 TTTTTGTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:3055608 original size:3 final size:3
Alignment explanation
Indices: 3055593--3055636 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
3055583 ATTAATTCTA
* *
3055593 AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
3055637 CTATAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:3055637 original size:9 final size:9
Alignment explanation
Indices: 3055602--3055642 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
3055592 AAATAATGAT
*
3055602 AATAATAAT
1 AATAATAAC
*
3055611 AATAATAAT
1 AATAATAAC
3055620 AATAATAAC
1 AATAATAAC
3055629 AATAATAAC
1 AATAATAAC
*
3055638 TATAA
1 AATAA
3055643 AATTAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (9 bp):
AATAATAAC
Found at i:3055910 original size:10 final size:10
Alignment explanation
Indices: 3055879--3055912 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
3055869 TTTTAAAAAG
*
3055879 TTTTCTCTTT
1 TTTTCTTTTT
*
3055889 TCTTCTTTTT
1 TTTTCTTTTT
3055899 TTTTCTTTTT
1 TTTTCTTTTT
3055909 TTTT
1 TTTT
3055913 AATTTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:3055933 original size:22 final size:20
Alignment explanation
Indices: 3055897--3055954 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
3055887 TTTCTTCTTT
* *
3055897 TTTTTTCTTTTTTTTT-AAT
1 TTTTTTATTTTTTTTTGAAA
3055916 TTTTTTAATTTTTATTTTGAAA
1 TTTTTT-ATTTTT-TTTTGAAA
*
3055938 TTTTTTATTTTGTTTTG
1 TTTTTTATTTTTTTTTG
3055955 TTTTGTTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 6 0.18
20 10 0.30
21 9 0.27
22 8 0.24
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTTTATTTTTTTTTGAAA
Found at i:3055954 original size:20 final size:19
Alignment explanation
Indices: 3055897--3055954 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
3055887 TTTCTTCTTT
* * *
3055897 TTTTTTCTTTTTTTTTAAT
1 TTTTTTATTTTTTTTGAAA
3055916 TTTTTTAATTTTTATTTTGAAA
1 TTTTTT-A-TTTT-TTTTGAAA
3055938 TTTTTTATTTTGTTTTG
1 TTTTTTATTTT-TTTTG
3055955 TTTTGTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 6 0.19
20 9 0.28
21 5 0.16
22 12 0.38
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.78
Consensus pattern (19 bp):
TTTTTTATTTTTTTTGAAA
Found at i:3056296 original size:130 final size:128
Alignment explanation
Indices: 3056065--3056325 Score: 486
Period size: 130 Copynumber: 2.0 Consensus size: 128
3056055 AATAAAAGAT
3056065 CATGCTCGGAGGTCTTACAAATCTCAAAACTAACATATTCAGCTCAAAAAACTTATGAATCCTGT
1 CATGCTCGGAGGTCTTACAAATCTCAAAACTAACATATTCAGCTCAAAAAACTTATGAATCCTGT
3056130 CTAAAGGACTTAGAGATTATACCCAAAAATTTTACAAATCCTAATATCTTTAAATGCTCATCC
66 CTAAAGGACTTAGAGATTATACCCAAAAATTTTACAAATCCTAATATCTTTAAATGCTCATCC
*
3056193 CATGCTCGGAGGTCTTACAAATCTCAAAACTAAAACATATTCAGCTCAAAAGACTTATGAATCCT
1 CATGCTCGGAGGTCTTACAAATCTCAAAACT--AACATATTCAGCTCAAAAAACTTATGAATCCT
*
3056258 GTCTAAAGGACTTAGAGATTATGCCCAAAAATTTTACAAATCCTAATATCTTTAAATGCTCATCC
64 GTCTAAAGGACTTAGAGATTATACCCAAAAATTTTACAAATCCTAATATCTTTAAATGCTCATCC
3056323 CAT
1 CAT
3056326 CAAAGGCATT
Statistics
Matches: 129, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
128 31 0.24
130 98 0.76
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (128 bp):
CATGCTCGGAGGTCTTACAAATCTCAAAACTAACATATTCAGCTCAAAAAACTTATGAATCCTGT
CTAAAGGACTTAGAGATTATACCCAAAAATTTTACAAATCCTAATATCTTTAAATGCTCATCC
Found at i:3056389 original size:22 final size:22
Alignment explanation
Indices: 3056364--3056417 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
3056354 AATATTTTGT
3056364 CCAAAGGTCTAATAAA-TTATGC
1 CCAAAGGTCTAA-AAAGTTATGC
*
3056386 CCAAAGGTCTAAAAAGTTATTC
1 CCAAAGGTCTAAAAAGTTATGC
3056408 CCAAAGGTCT
1 CCAAAGGTCT
3056418 TAGAGATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (22 bp):
CCAAAGGTCTAAAAAGTTATGC
Found at i:3056427 original size:22 final size:22
Alignment explanation
Indices: 3056350--3056446 Score: 74
Period size: 22 Copynumber: 4.4 Consensus size: 22
3056340 CTTTAAAAAT
* *
3056350 TTAAAATATTTTGTCCAAAGGTC
1 TTAAAA-ATTATGCCCAAAGGTC
3056373 -TAATAAATTATGCCCAAAGGTC
1 TTAA-AAATTATGCCCAAAGGTC
*
3056395 -TAAAAAGTTATTCCCAAAGGTC
1 TTAAAAA-TTATGCCCAAAGGTC
* * *
3056417 TTAGAGATTATGCTCAGAA-GTC
1 TTAAAAATTATGCCCA-AAGGTC
*
3056439 TTACAAAT
1 TTAAAAAT
3056447 CTCAACATCT
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
21 3 0.05
22 50 0.82
23 8 0.13
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (22 bp):
TTAAAAATTATGCCCAAAGGTC
Found at i:3056566 original size:22 final size:22
Alignment explanation
Indices: 3056527--3056572 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
3056517 GGTTTTAAAG
* *
3056527 ATTATGTCTGAAGCTCTTAGAA
1 ATTATGCCTGAAGCTCTTACAA
* *
3056549 ATTATGCCTGGAGGTCTTACAA
1 ATTATGCCTGAAGCTCTTACAA
3056571 AT
1 AT
3056573 CTCAACATCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (22 bp):
ATTATGCCTGAAGCTCTTACAA
Found at i:3056879 original size:104 final size:103
Alignment explanation
Indices: 3056547--3056879 Score: 380
Period size: 104 Copynumber: 3.2 Consensus size: 103
3056537 AAGCTCTTAG
** * * * *
3056547 AAATTATGCCTGGAGGTCTTACAAATCTCAACATCTTTGAATGGTCCTCACATCAAAGGCATTAA
1 AAATTATGCCTAAAGATCTTACAAATCTCAACATCTTTGAATGCTTCTCATATCAAAGGCATT-A
* * *
3056612 AACTTTAAAAATTTAAAATGTTTCACCTAAA-AGTTTTAC
65 AACTTTAAAATTTTAAAATGTTTTACCCAAAGA-TTTTAC
* * * * * * * **
3056651 AAATTATGCCTAAAGTTTTTACAAATCTCAACATATCTAAATGCTTCTCGTATAAAAAACATTAA
1 AAATTATGCCTAAAGATCTTACAAATCTCAACATCTTTGAATGCTTCTCATATCAAAGGCATTAA
* * * *
3056716 TGCTTTGAAATTTTAAAATGTTTTACCCAAAGGTCTTAC
66 -ACTTTAAAATTTTAAAATGTTTTACCCAAAGATTTTAC
* *
3056755 AAATTATGCCTAGAGGTCTTACAAATCTCAACATCTTTGAATGCTTCTCATATCAAAGGCATTGA
1 AAATTATGCCTAAAGATCTTACAAATCTCAACATCTTTGAATGCTTCTCATATCAAAGGCATT-A
**
3056820 AACTTTAAAATTTTAAAATGTTTTACCCAAAGATTTTGG
65 AACTTTAAAATTTTAAAATGTTTTACCCAAAGATTTTAC
*
3056859 AAATTATGCCTAAAAATCTTA
1 AAATTATGCCTAAAGATCTTA
3056880 GCGATCTAGA
Statistics
Matches: 186, Mismatches: 40, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
103 2 0.01
104 182 0.98
105 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (103 bp):
AAATTATGCCTAAAGATCTTACAAATCTCAACATCTTTGAATGCTTCTCATATCAAAGGCATTAA
ACTTTAAAATTTTAAAATGTTTTACCCAAAGATTTTAC
Found at i:3057489 original size:26 final size:26
Alignment explanation
Indices: 3057460--3057522 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
3057450 TGCAAATCCC
* **
3057460 ATGATGCAAATGCAAATGTCTTTCTT
1 ATGATGCAAATGCAAATGCCTTGATT
**
3057486 ATGATGCAAATGTGAATGCCTTGATT
1 ATGATGCAAATGCAAATGCCTTGATT
3057512 ATGATGCAAAT
1 ATGATGCAAAT
3057523 TATGTAAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (26 bp):
ATGATGCAAATGCAAATGCCTTGATT
Found at i:3057770 original size:167 final size:161
Alignment explanation
Indices: 3057555--3058053 Score: 698
Period size: 157 Copynumber: 3.1 Consensus size: 161
3057545 TCATGGTACA
* *
3057555 AATGCAAATGATACAAAT-CTGAATGTTTTTTTTTTGTTTTTTGTTTTTATAGCATACAGATCAA
1 AATGCAAGTGATGCAAATAC-GAA-G-TTTTTTTTTGTTTTTTGTTTTTATAGCATACAGATCAA
3057619 ATGTCTTTCTCATGATGCACATGTAGTTGATGCAAATGTGATTTTATGCGATTTTGTTTATAGCA
63 ATGTCTTTCTCATGATGCACATGTAGTTGATGCAAA--TGA---TAT-CGATTTT-TTTATAGCA
*
3057684 TACAAGTTAAATATCTTTCTCATGATACACATGTCAATACG
121 TACAAGTTAAATATCTTTCTCATGATGCACATGTCAATACG
* *
3057725 AATGCAAGTGACGCAAATGCGAA-TTTTTTTTTGTTTTTTGTTTTTATAGCATACAGATCAAATG
1 AATGCAAGTGATGCAAATACGAAGTTTTTTTTTGTTTTTTGTTTTTATAGCATACAGATCAAATG
*
3057789 TCTTTCTCATGATGCATATGT-GATTGATGCAAATG---T-GATTTTTTTATAGCATACAAGTTA
66 TCTTTCTCATGATGCACATGTAG-TTGATGCAAATGATATCGATTTTTTTATAGCATACAAGTTA
* *
3057849 AATATCTTACTCATGATGCACATGTCAATACC
130 AATATCTTTCTCATGATGCACATGTCAATACG
* *
3057881 AATGCAA-TGATGCAAATACGAATGTTTTTTTTTGTTTTTTGTTTTTACAGCATACAAATCAAAT
1 AATGCAAGTGATGCAAATACGAA-GTTTTTTTTTGTTTTTTGTTTTTATAGCATACAGATCAAAT
*
3057945 GTTTTTCTCATGATGCACATGTAGTTGATGC-AA--ATA-CGATTTTTTTATAGCATACAAGTTA
65 GTCTTTCTCATGATGCACATGTAGTTGATGCAAATGATATCGATTTTTTTATAGCATACAAGTTA
*
3058006 AATATCTTTCCCATGATGCACATGTCAATACG
130 AATATCTTTCTCATGATGCACATGTCAATACG
3058038 AATGCAAGTGATGCAA
1 AATGCAAGTGATGCAA
3058054 TTTTTTGTTT
Statistics
Matches: 303, Mismatches: 16, Indels: 32
0.86 0.05 0.09
Matches are distributed among these distances:
155 13 0.04
156 56 0.18
157 131 0.43
158 9 0.03
159 1 0.00
165 2 0.01
166 1 0.00
167 71 0.23
170 18 0.06
171 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (161 bp):
AATGCAAGTGATGCAAATACGAAGTTTTTTTTTGTTTTTTGTTTTTATAGCATACAGATCAAATG
TCTTTCTCATGATGCACATGTAGTTGATGCAAATGATATCGATTTTTTTATAGCATACAAGTTAA
ATATCTTTCTCATGATGCACATGTCAATACG
Done.