Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 22 of 106
Found at i:3947998 original size:8 final size:8
Alignment explanation
Indices: 3947985--3948009 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
3947975 TTGATAAAGA
3947985 ATTTTGTG
1 ATTTTGTG
3947993 ATTTTGTG
1 ATTTTGTG
3948001 ATTTTGTG
1 ATTTTGTG
3948009 A
1 A
3948010 GAAAGGGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (8 bp):
ATTTTGTG
Found at i:3959029 original size:31 final size:31
Alignment explanation
Indices: 3958994--3959082 Score: 74
Period size: 31 Copynumber: 2.8 Consensus size: 31
3958984 TTTTTTAGTT
3958994 TTTTTAATTTTTTTGTTAAATTTTTTATACA
1 TTTTTAATTTTTTTGTTAAATTTTTTATACA
** *
3959025 TTTTT-ATTATTTTAT-TTCTATTTTTTATATA
1 TTTTTAATT-TTTT-TGTTAAATTTTTTATACA
* *
3959056 TGTTTATTTTGCTTTTGTGTAAATTTT
1 TTTTTAATTT--TTTTGT-TAAATTTT
3959083 GTTAGTAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
30 3 0.07
31 27 0.61
32 4 0.09
33 4 0.09
34 6 0.14
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.70
Consensus pattern (31 bp):
TTTTTAATTTTTTTGTTAAATTTTTTATACA
Found at i:3969715 original size:33 final size:33
Alignment explanation
Indices: 3969673--3969843 Score: 207
Period size: 33 Copynumber: 5.2 Consensus size: 33
3969663 GGGGGTAGTT
* *
3969673 ATTCAAACTTCATGGCCTATGTTTAGAGGAATC
1 ATTCAAACTTCATGGCCTTTATTTAGAGGAATC
*
3969706 ATTCAAACTTCATGGCTTTTATTTAGAGGAATC
1 ATTCAAACTTCATGGCCTTTATTTAGAGGAATC
* * *
3969739 ATTCAAATTTCATAGCCTTTATTTAAAGGAATC
1 ATTCAAACTTCATGGCCTTTATTTAGAGGAATC
* * * * *
3969772 GTTCAAAATTTATGGCTTTTGTTTAGAGGAATC
1 ATTCAAACTTCATGGCCTTTATTTAGAGGAATC
* * * *
3969805 ATTCAAATTTCATAGCCTCTATTTAGAGAAATC
1 ATTCAAACTTCATGGCCTTTATTTAGAGGAATC
3969838 ATTCAA
1 ATTCAA
3969844 GTTTTATGAC
Statistics
Matches: 116, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 116 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (33 bp):
ATTCAAACTTCATGGCCTTTATTTAGAGGAATC
Found at i:3969864 original size:99 final size:99
Alignment explanation
Indices: 3969674--3969877 Score: 266
Period size: 99 Copynumber: 2.1 Consensus size: 99
3969664 GGGGTAGTTA
* * * * *
3969674 TTCAAACTTCATGGCCTATGTTTAGAGGAATCATTCAAACTTCATGGCTTTTATTTAGAGGAATC
1 TTCAAAATTCATGGCCTATGTTTAGAGGAATCATTCAAACTTCATAGCCTCTATTTAGAGAAATC
*
3969739 ATTCAAATTTCATAGCCTTTATTTAAAGGAATCG
66 ATTCAAATTTCATAGACTTTATTTAAAGGAATCG
* * * *
3969773 TTCAAAATTTATGGCTTTTGTTTAGAGGAATCATTCAAATTTCATAGCCTCTATTTAGAGAAATC
1 TTCAAAATTCATGGCCTATGTTTAGAGGAATCATTCAAACTTCATAGCCTCTATTTAGAGAAATC
* * * *
3969838 ATTCAAGTTTTAT-GACTTTTTCTTAAAGGAATCT
66 ATTCAAATTTCATAGACTTTAT-TTAAAGGAATCG
3969872 TTCAAA
1 TTCAAA
3969878 TATCATCGCC
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
98 6 0.07
99 84 0.93
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (99 bp):
TTCAAAATTCATGGCCTATGTTTAGAGGAATCATTCAAACTTCATAGCCTCTATTTAGAGAAATC
ATTCAAATTTCATAGACTTTATTTAAAGGAATCG
Found at i:3969889 original size:66 final size:66
Alignment explanation
Indices: 3969673--3969890 Score: 258
Period size: 66 Copynumber: 3.3 Consensus size: 66
3969663 GGGGGTAGTT
* * * * * *
3969673 ATTCAAACTTCATGGCCTATGTTTAGAGGAATCATTCAAACTTCATGGCTTTTATTTAGAGGAAT
1 ATTCAAATTTCATAGCCTCTATTTAGAGGAATCATTCAAAATTTATGGCTTTTATTTAGAGGAAT
3969738 C
66 C
* * * *
3969739 ATTCAAATTTCATAGCCTTTATTTAAAGGAATCGTTCAAAATTTATGGCTTTTGTTTAGAGGAAT
1 ATTCAAATTTCATAGCCTCTATTTAGAGGAATCATTCAAAATTTATGGCTTTTATTTAGAGGAAT
3969804 C
66 C
* ** * *
3969805 ATTCAAATTTCATAGCCTCTATTTAGAGAAATCATTCAAGTTTTATGACTTTT-TCTTAAAGGAA
1 ATTCAAATTTCATAGCCTCTATTTAGAGGAATCATTCAAAATTTATGGCTTTTAT-TTAGAGGAA
3969869 TC
65 TC
* * *
3969871 TTTCAAATATCATCGCCTCT
1 ATTCAAATTTCATAGCCTCT
3969891 TAGATTTTTA
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
65 1 0.01
66 130 0.99
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (66 bp):
ATTCAAATTTCATAGCCTCTATTTAGAGGAATCATTCAAAATTTATGGCTTTTATTTAGAGGAAT
C
Found at i:3969972 original size:36 final size:36
Alignment explanation
Indices: 3969932--3970074 Score: 148
Period size: 36 Copynumber: 4.0 Consensus size: 36
3969922 AGATGAACTA
* *
3969932 TTTAAAGTTTCATTG-CTTTTGGTTA-AAGAAGCTTTC
1 TTTAAAGTGTCATAGCCTTTT-GTTAGAAG-AGCTTTC
* *
3969968 TTTAAAATGTCATAGCCTTTTTTTAGAAGAGCTTTC
1 TTTAAAGTGTCATAGCCTTTTGTTAGAAGAGCTTTC
* * * *
3970004 TTTAAAGTGTCATAACCTCTTGTTAGATGAGC-TCC
1 TTTAAAGTGTCATAGCCTTTTGTTAGAAGAGCTTTC
* *
3970039 TTTCAAAGTTTCATAGCCTTTAGTTAGAAGAGCTTT
1 TTT-AAAGTGTCATAGCCTTTTGTTAGAAGAGCTTT
3970075 TAATTTTAAG
Statistics
Matches: 87, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
35 5 0.06
36 73 0.84
37 9 0.10
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.43
Consensus pattern (36 bp):
TTTAAAGTGTCATAGCCTTTTGTTAGAAGAGCTTTC
Found at i:3970269 original size:36 final size:35
Alignment explanation
Indices: 3970189--3970333 Score: 150
Period size: 36 Copynumber: 4.0 Consensus size: 35
3970179 TTATTACCTC
* *
3970189 TATTTAAAGTTTCATTGCCTTTGATTAGAGGAG--T
1 TATTTAAAGTTTCATAG-CTTTGGTTAGAGGAGTTT
* *
3970223 TATTTAAAGTTTCATAGCTGTTGGTCAGAAGAGTTT
1 TATTTAAAGTTTCATAGCT-TTGGTTAGAGGAGTTT
* *
3970259 TATTTAAAGTTTCATAACCTTTAGTTAGAGGAGTTT
1 TATTTAAAGTTTCAT-AGCTTTGGTTAGAGGAGTTT
* *
3970295 TATTTTAAAGTTTCATTACCTTTGGTTAGATGAGCTTT
1 TA-TTTAAAGTTTCA-TAGCTTTGGTTAGAGGAG-TTT
3970333 T
1 T
3970334 CAATATCAGG
Statistics
Matches: 94, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
33 2 0.02
34 26 0.28
36 31 0.33
37 30 0.32
38 5 0.05
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.46
Consensus pattern (35 bp):
TATTTAAAGTTTCATAGCTTTGGTTAGAGGAGTTT
Found at i:3970310 original size:37 final size:36
Alignment explanation
Indices: 3970189--3970333 Score: 170
Period size: 37 Copynumber: 4.0 Consensus size: 36
3970179 TTATTACCTC
* *
3970189 TATTTAAAGTTTCATTGCCTTTGATTAGAGGAG--T
1 TATTTAAAGTTTCATTACCTTTGGTTAGAGGAGTTT
* * *
3970223 TATTTAAAGTTTCA-TAGCTGTTGGTCAGAAGAGTTT
1 TATTTAAAGTTTCATTACCT-TTGGTTAGAGGAGTTT
* *
3970259 TATTTAAAGTTTCATAACCTTTAGTTAGAGGAGTTT
1 TATTTAAAGTTTCATTACCTTTGGTTAGAGGAGTTT
*
3970295 TATTTTAAAGTTTCATTACCTTTGGTTAGATGAGCTTT
1 TA-TTTAAAGTTTCATTACCTTTGGTTAGAGGAG-TTT
3970333 T
1 T
3970334 CAATATCAGG
Statistics
Matches: 92, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
33 3 0.03
34 24 0.26
36 30 0.33
37 31 0.34
38 4 0.04
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.46
Consensus pattern (36 bp):
TATTTAAAGTTTCATTACCTTTGGTTAGAGGAGTTT
Found at i:3972008 original size:13 final size:13
Alignment explanation
Indices: 3971986--3972016 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
3971976 TAAGGGAGAC
3971986 AAAA-AGAAAAAA
1 AAAAGAGAAAAAA
3971998 AAAAGAGAAAAAA
1 AAAAGAGAAAAAA
3972011 AAAAGA
1 AAAAGA
3972017 AAATGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAGAGAAAAAA
Found at i:3972025 original size:13 final size:11
Alignment explanation
Indices: 3971986--3972019 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
3971976 TAAGGGAGAC
3971986 AAAAAGAAAAAA
1 AAAAAG-AAAAA
3971998 AAAAGAGAAAAA
1 AAAA-AGAAAAA
3972010 AAAAAGAAAA
1 AAAAAGAAAA
3972020 TGAAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 13 0.62
13 2 0.10
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:3979680 original size:94 final size:98
Alignment explanation
Indices: 3979456--3979720 Score: 405
Period size: 100 Copynumber: 2.7 Consensus size: 98
3979446 GTTTCTAAGA
*
3979456 AGGTTTAAGGAAAAAGTTGAAATATCAATTTTTCCTAAATTTTTTTAAGAATAAAAATAAAATAA
1 AGGTTT-AGAAAAAAGTTGAAATATCAATTTTTCCTAAATTTTTTTAAGAATAAAAATAAAATAA
3979521 GATAAATATAAACAAAATAAACTTAAAAAAAAAAAG
65 GATAAATATAAACAAAATAAACTT--AAAAAAAAAG
*
3979557 AGGTTTAGAAAAAAGTTGAAATATCAATTTTTTCTAAATTTTTTTAAGAATAAAAATAAAATAAG
1 AGGTTTAGAAAAAAGTTGAAATATCAATTTTTCCTAAATTTTTTTAAGAATAAAAATAAAATAAG
3979622 ATAAATATAAACAAAATAAACTT-AAAAAAAA-
66 ATAAATATAAACAAAATAAACTTAAAAAAAAAG
* * * *
3979653 A-GTTTA-AAAAAAGTTGAAATATTAATTTTTCCTGAAA-ATCTTGAAGAATAAAAATAAAATAA
1 AGGTTTAGAAAAAAGTTGAAATATCAATTTTTCCT-AAATTTTTTTAAGAATAAAAATAAAATAA
3979715 GATAAA
65 GATAAA
3979721 CAAAATTAAT
Statistics
Matches: 156, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
94 53 0.34
95 8 0.05
96 1 0.01
97 8 0.05
100 80 0.51
101 6 0.04
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (98 bp):
AGGTTTAGAAAAAAGTTGAAATATCAATTTTTCCTAAATTTTTTTAAGAATAAAAATAAAATAAG
ATAAATATAAACAAAATAAACTTAAAAAAAAAG
Found at i:3984175 original size:8 final size:8
Alignment explanation
Indices: 3984143--3984186 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
3984133 TTTTTTTTCA
*
3984143 TTTCATCT
1 TTTCATTT
*
3984151 TTTCATCT
1 TTTCATTT
3984159 TTTCATTT
1 TTTCATTT
*
3984167 TTTCCTTTT
1 TTT-CATTT
3984176 TTTCATTT
1 TTTCATTT
3984184 TTT
1 TTT
3984187 TACATTCATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
8 25 0.78
9 7 0.22
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTCATTT
Found at i:3984177 original size:16 final size:17
Alignment explanation
Indices: 3984143--3984204 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
3984133 TTTTTTTTCA
*
3984143 TTTCATCTTTTCA-TCT
1 TTTCATTTTTTCATTCT
* *
3984159 TTTCATTTTTTCCTTTT
1 TTTCATTTTTTCATTCT
3984176 TTTCATTTTTTTACATTC-
1 TTTCA-TTTTTT-CATTCT
*
3984194 ATTCATTTTTT
1 TTTCATTTTTT
3984205 ACTTTTATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
16 11 0.30
17 13 0.35
18 10 0.27
19 3 0.08
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTCATTTTTTCATTCT
Found at i:3996028 original size:16 final size:17
Alignment explanation
Indices: 3996007--3996040 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
3995997 TTCTTTAAAG
3996007 ATTG-TTTTCAAAATTT
1 ATTGTTTTTCAAAATTT
*
3996023 ATTGTTTTTCAAATTTT
1 ATTGTTTTTCAAAATTT
3996040 A
1 A
3996041 GTTTAGCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (17 bp):
ATTGTTTTTCAAAATTT
Found at i:4002101 original size:27 final size:26
Alignment explanation
Indices: 4002050--4002112 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
4002040 ATAAAATAAG
4002050 ATAATATTATTTAATTTAATCTTATTC
1 ATAATATTATTTAATTTAATCTTA-TC
*
4002077 ATAATATTATCTT-A-TTATATTTTATC
1 ATAATATTAT-TTAATTTA-ATCTTATC
*
4002103 ATAATCTTAT
1 ATAATATTAT
4002113 ATATCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 14 0.44
27 16 0.50
28 2 0.06
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.56
Consensus pattern (26 bp):
ATAATATTATTTAATTTAATCTTATC
Found at i:4003101 original size:22 final size:24
Alignment explanation
Indices: 4003075--4003119 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
4003065 TTTTCTTTAT
*
4003075 TATAAAATTAA-A-TTATATAATA
1 TATAAAAATAATATTTATATAATA
4003097 TATAAAAATAATATTTATATAAT
1 TATAAAAATAATATTTATATAAT
4003120 TATTGAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 1 0.05
24 9 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
TATAAAAATAATATTTATATAATA
Found at i:4004704 original size:20 final size:21
Alignment explanation
Indices: 4004679--4004717 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
4004669 TTAAAAGATA
4004679 AAAAATAAAAAT-AATATTTT
1 AAAAATAAAAATAAATATTTT
*
4004699 AAAAATAAATATAAATATT
1 AAAAATAAAAATAAATATT
4004718 ATAATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATAAAAATAAATATTTT
Found at i:4005591 original size:22 final size:20
Alignment explanation
Indices: 4005556--4005596 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
4005546 CTCATAACAA
*
4005556 TTAAAAATATATAATTTATT
1 TTAAAAATATATAAATTATT
4005576 TTAAATAATATTATAAATTAT
1 TTAAA-AATA-TATAAATTAT
4005597 AAAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAAAAATATATAAATTATT
Found at i:4006503 original size:86 final size:86
Alignment explanation
Indices: 4006409--4006566 Score: 205
Period size: 86 Copynumber: 1.8 Consensus size: 86
4006399 TTAAAAATGT
* *
4006409 TTTTTTAAACATAATATAGATATTTAACA-AATTTA-CAAATATTATAATT-TAAATAAATAGTT
1 TTTTTTAAACATAATAT--ATA-TTAACATAATTTATCAAATATTATAATTAAAAATAAATAATT
4006471 TTTAAATTTTCTATTTTTTAGGAA
63 TTTAAATTTTCTATTTTTTAGGAA
* * **
4006495 TTTTTTAAATATAATATATATTAATATGTTTTATCAAATATTATAATTAAAAATAAATAATTTTT
1 TTTTTTAAACATAATATATATTAACATAATTTATCAAATATTATAATTAAAAATAAATAATTTTT
*
4006560 AATTTTT
66 AAATTTT
4006567 AAGAAGTTGT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 5 0.08
84 7 0.11
85 14 0.23
86 36 0.58
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (86 bp):
TTTTTTAAACATAATATATATTAACATAATTTATCAAATATTATAATTAAAAATAAATAATTTTT
AAATTTTCTATTTTTTAGGAA
Found at i:4008661 original size:9 final size:9
Alignment explanation
Indices: 4008651--4008703 Score: 61
Period size: 9 Copynumber: 5.9 Consensus size: 9
4008641 ACTATTACTA
*
4008651 TTATTATTA
1 TTATTATTG
*
4008660 TTATTGTTG
1 TTATTATTG
* *
4008669 TTGTTGTTG
1 TTATTATTG
*
4008678 TTGTTATTG
1 TTATTATTG
4008687 TTATTATTG
1 TTATTATTG
4008696 TTATTATT
1 TTATTATT
4008704 ACGCATTAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.17, C:0.00, G:0.15, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:4013421 original size:266 final size:266
Alignment explanation
Indices: 4012947--4013479 Score: 883
Period size: 266 Copynumber: 2.0 Consensus size: 266
4012937 AAGAGGATCG
4012947 ATCCATTCTTATAAAGGATCGATCCATTCCTAAAAAAGAAATTTATGAGAGCATTCTGTAAGAAA
1 ATCCATTCTTATAAAGGATCGATCCATTCCTAAAAAAGAAATTTATGAGAGCATTCTGTAAGAAA
* **
4013012 ATCGATCAATCTTATTTTAAACGGGATTGATCCAATTTTGCAAAACAATTAAGGAATTATCCAGT
66 ATCGATCAATCTTATTTTAAACGGGATTGATCCAATTTTGCAAAACAACTAAGGAAGCATCCAGT
*
4013077 TAAAAAATTGATCAATAATGTCATAACATATAGGTCCGTAATCTATAGCTAGACATTCACTTAAG
131 TAAAAAATTGATCAATAATGTCATAACATATAGATCCGTAATCTATAGCTAGACATTCACTTAAG
*
4013142 AAGTTACCACCAATCTTTTTTACTAGGTGTGATTGGCCGCCTAAGGAATTTATCATTTTAAGGAG
196 AAGTTACCACCAATCTTTTTTACTAGGTGTGATTGGCCACCTAAGGAATTTATCATTTTAAGGAG
4013207 CTCCTA
261 CTCCTA
* *
4013213 ATCCATTCTTAT-AAGAGATCGATCCATTCCTGAAAAA-ACATTCTATGAGAGCATTCTGTAAGA
1 ATCCATTCTTATAAAG-GATCGATCCATTCCTAAAAAAGAAATT-TATGAGAGCATTCTGTAAGA
* * *
4013276 AAATCGATCAATCTTATTTTAAATGGGATTGATCCAATTTTGCAAAACAACTAA-GAAGCATTCT
64 AAATCGATCAATCTTATTTTAAACGGGATTGATCCAATTTTGCAAAACAACTAAGGAAGCATCCA
*
4013340 GTTAAAAAATTGATCAATAATGTCATAACATATAGATCCGTAAATCTATAGCTAGACATTGACTT
129 GTTAAAAAATTGATCAATAATGTCATAACATATAGATCCGT-AATCTATAGCTAGACATTCACTT
* ** *
4013405 AAGGAGTTGTCACCAATCTTTTTTACTAGGTGTGATTGGCTACCTAAGGAATTTATCATTTTAAG
193 AAGAAGTTACCACCAATCTTTTTTACTAGGTGTGATTGGCCACCTAAGGAATTTATCATTTTAAG
4013470 GAGCTCCTA
258 GAGCTCCTA
4013479 A
1 A
4013480 GCTTGATTAA
Statistics
Matches: 249, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
265 53 0.21
266 196 0.79
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (266 bp):
ATCCATTCTTATAAAGGATCGATCCATTCCTAAAAAAGAAATTTATGAGAGCATTCTGTAAGAAA
ATCGATCAATCTTATTTTAAACGGGATTGATCCAATTTTGCAAAACAACTAAGGAAGCATCCAGT
TAAAAAATTGATCAATAATGTCATAACATATAGATCCGTAATCTATAGCTAGACATTCACTTAAG
AAGTTACCACCAATCTTTTTTACTAGGTGTGATTGGCCACCTAAGGAATTTATCATTTTAAGGAG
CTCCTA
Found at i:4014086 original size:58 final size:58
Alignment explanation
Indices: 4013882--4014175 Score: 311
Period size: 58 Copynumber: 5.0 Consensus size: 58
4013872 ACTTTTATAC
* * * * *
4013882 AAGAAAAATTGAAACTTTCAACTTTTCCT-CAAAATGTTTTTCTTGATAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAT-ATTTT-TT-AAAAATTTTATTTTT
* * * ** * *
4013942 AAGAAAAATTGATACTTCCAACTTTTCCTTAAAATATTTTTTTTTCTGAAATTTTAATTTC
1 AAGAAAAATTGATACTTTCAACTTTTCC-TAAAA-AATATTTTTT-AAAAATTTTATTTTT
* * * *
4014003 AAGGAAAACTGATACTTTTAACTTTTCCTAAAAAATATATTTTAAAAATTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTAAAAATTTTATTTTT
* * * *
4014061 GAGAAAAATTGATACTTTCATCTTTTCCTCAAAAATATTTTTTAAAAATTTTATTTTG
1 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTAAAAATTTTATTTTT
* ** *
4014119 AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATGCTTTTTAAAAATTCTATTTT
1 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTAAAAATTTTATTTT
4014176 ATATTTTTTT
Statistics
Matches: 197, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
58 113 0.57
59 7 0.04
60 31 0.16
61 37 0.19
62 7 0.04
63 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46
Consensus pattern (58 bp):
AAGAAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTAAAAATTTTATTTTT
Found at i:4014816 original size:20 final size:21
Alignment explanation
Indices: 4014779--4014830 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
4014769 TCTTTTCTAC
* *
4014779 TTCTGATTTTTTACTTTTTTCT
1 TTCT-ATTTTTGACTTTTGTCT
4014801 TTCTATTTTTGA-TTTTGTCT
1 TTCTATTTTTGACTTTTGTCT
*
4014821 TTCTGTTTTT
1 TTCTATTTTT
4014831 ACATTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 16 0.59
21 7 0.26
22 4 0.15
ACGTcount: A:0.08, C:0.12, G:0.08, T:0.73
Consensus pattern (21 bp):
TTCTATTTTTGACTTTTGTCT
Found at i:4015017 original size:16 final size:16
Alignment explanation
Indices: 4014996--4015032 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
4014986 AAACACATTT
4014996 TTTTTATT-TTTTTTCA
1 TTTTTATTATTTTTT-A
4015012 TTTTTATTATTTTTTA
1 TTTTTATTATTTTTTA
4015028 TTTTT
1 TTTTT
4015033 TAATTGTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTATTATTTTTTA
Found at i:4015033 original size:9 final size:9
Alignment explanation
Indices: 4014992--4015026 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
4014982 ACTAAAACAC
4014992 ATTTTTTTT
1 ATTTTTTTT
4015001 ATTTTTTTT
1 ATTTTTTTT
*
4015010 CATTTTTATT
1 -ATTTTTTTT
4015020 ATTTTTT
1 ATTTTTT
4015027 ATTTTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:4015249 original size:42 final size:42
Alignment explanation
Indices: 4015161--4015389 Score: 226
Period size: 42 Copynumber: 5.5 Consensus size: 42
4015151 GACACTTTTT
* *
4015161 TTTGAAAAAAAAAAAAT--TCCTCTAAACAGAGGCTCAACGAC
1 TTTG-AAAAAAATAAATGCTCCTCTAAACAGAGGCTCAACAAC
* *
4015202 TTTTGAAAATAAATAAAT-CTCCTCTAAACAGAGGCACAACAGC
1 -TTTGAAAA-AAATAAATGCTCCTCTAAACAGAGGCTCAACAAC
* *
4015245 TTTG--AAAAATAAATTGCCCCTCTAAACAGAGGCTCCACAAC
1 TTTGAAAAAAATAAA-TGCTCCTCTAAACAGAGGCTCAACAAC
* * *
4015286 TTT-AAAAAAATAAATTACTCCTTTAAACAGAGGCATC-ATAAC
1 TTTGAAAAAAATAAA-TGCTCCTCTAAACAGAGGC-TCAACAAC
* *
4015328 TTT-AAAAAAATAAATGCTCTTCTAAACAGAGGCTCCACAAC
1 TTTGAAAAAAATAAATGCTCCTCTAAACAGAGGCTCAACAAC
4015369 TTTG--AAAAATAAATTGCTCCT
1 TTTGAAAAAAATAAA-TGCTCCT
4015390 TTATAATCAT
Statistics
Matches: 160, Mismatches: 17, Indels: 21
0.81 0.09 0.11
Matches are distributed among these distances:
39 7 0.04
40 14 0.09
41 57 0.36
42 59 0.37
43 23 0.14
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (42 bp):
TTTGAAAAAAATAAATGCTCCTCTAAACAGAGGCTCAACAAC
Found at i:4015294 original size:41 final size:42
Alignment explanation
Indices: 4015178--4015389 Score: 238
Period size: 41 Copynumber: 5.1 Consensus size: 42
4015168 AAAAAAAAAT
* *
4015178 TCCTCTAAACAGAGGCTCAACGACTTTTGAAAATAAATAAA-T-C
1 TCCTCTAAACAGAGGCTCCACAAC-TTT-AAAA-AAATAAATTGC
* * * *
4015221 TCCTCTAAACAGAGGCACAACAGCTTT-GAAAAATAAATTGC
1 TCCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTGC
* *
4015262 CCCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTAC
1 TCCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTGC
* *
4015304 TCCTTTAAACAGAGGCAT-CATAACTTTAAAAAAATAAA-TGC
1 TCCTCTAAACAGAGGC-TCCACAACTTTAAAAAAATAAATTGC
* *
4015345 TCTTCTAAACAGAGGCTCCACAACTTT-GAAAAATAAATTGC
1 TCCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTGC
4015386 TCCT
1 TCCT
4015390 TTATAATCAT
Statistics
Matches: 144, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 7 0.05
40 13 0.09
41 54 0.38
42 48 0.33
43 22 0.15
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.25
Consensus pattern (42 bp):
TCCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTGC
Found at i:4015357 original size:83 final size:82
Alignment explanation
Indices: 4015179--4015392 Score: 258
Period size: 83 Copynumber: 2.6 Consensus size: 82
4015169 AAAAAAAATT
* * *
4015179 CCTCTAAACAGAGGCTCAACGACTTTTGAAAATAAATAAA-TCTCCTCTAAACAGAGGCACAACA
1 CCTCTAAACAGAGGCTCCACAAC-TTT-AAAA-AAATAAATTCTCCTTTAAACAGAGGCACAACA
*
4015243 GCTTTGAAAAATAAATTGCC
63 GCTTTAAAAAATAAATTGCC
4015263 CCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTACTCCTTTAAACAGAGGCATCATA-A
1 CCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATT-CTCCTTTAAACAGAGGCA-CA-ACA
*
4015327 -CTTTAAAAAAATAAA-TGCT
63 GCTTT-AAAAAATAAATTGCC
* *
4015346 CTTCTAAACAGAGGCTCCACAACTTT-GAAAAATAAATTGCTCCTTTA
1 CCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATT-CTCCTTTA
4015393 TAATCATGTC
Statistics
Matches: 117, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
81 7 0.06
82 24 0.21
83 52 0.44
84 33 0.28
85 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.25
Consensus pattern (82 bp):
CCTCTAAACAGAGGCTCCACAACTTTAAAAAAATAAATTCTCCTTTAAACAGAGGCACAACAGCT
TTAAAAAATAAATTGCC
Found at i:4015799 original size:114 final size:114
Alignment explanation
Indices: 4015664--4016043 Score: 575
Period size: 114 Copynumber: 3.3 Consensus size: 114
4015654 ATATCCCAAA
* * * *
4015664 AGTTCAAA-TTTTTTCGTTTGAATTTTGAAGGTTCACATTCAAGAAATCTTAGAGTTTCACATAT
1 AGTTCAAAGCTTTTT-GTTTGAATTTTGGAGATTCACATTCAAGAAATCTTAGAGTTTCACATCT
4015728 AAGTTCAAAGGTTCTCACTCAAAAATTTAGAAATTCGCATCCAAAAGTTG
65 AAGTTCAAAGGTTCTCACTCAAAAATTTAGAAATTCGCATCCAAAAGTTG
4015778 AGTTCAAAGCTTTTTGTTTGAATTTTGGAGATTCACATTCAAGAAATCTTAGAGTTTCACATCTA
1 AGTTCAAAGCTTTTTGTTTGAATTTTGGAGATTCACATTCAAGAAATCTTAGAGTTTCACATCTA
* * * *
4015843 AGTTGAAAGGTTCTCACTCAAAAATTTAGATATTCACCTCCAAAAGTTG
66 AGTTCAAAGGTTCTCACTCAAAAATTTAGAAATTCGCATCCAAAAGTTG
* *
4015892 AGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAGTTTCACATCTA
1 AGTTCAAAGCTTTTTGTTTGAATTTTGGAGATTCACATTCAAGAAATCTTAGAGTTTCACATCTA
* * * *
4015957 AGTTCAAATGTTCTCACTCAAAATTTTA-AAGATTTGCATCCAAAAGCTG
66 AGTTCAAAGGTTCTCACTCAAAAATTTAGAA-ATTCGCATCCAAAAGTTG
* * *
4016006 AGTCCAAAGCTTTTTTTTTTAATTTTGGAGATTCACAT
1 AGTTCAAAGCTTTTTGTTTGAATTTTGGAGATTCACAT
4016044 CTAAAAGTTT
Statistics
Matches: 242, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
113 1 0.00
114 236 0.98
115 5 0.02
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (114 bp):
AGTTCAAAGCTTTTTGTTTGAATTTTGGAGATTCACATTCAAGAAATCTTAGAGTTTCACATCTA
AGTTCAAAGGTTCTCACTCAAAAATTTAGAAATTCGCATCCAAAAGTTG
Found at i:4016276 original size:21 final size:20
Alignment explanation
Indices: 4016252--4016302 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
4016242 GTTTCACACC
4016252 TCAAAGATTCTCATCTGAAAT
1 TCAAAGATTCTCATCTG-AAT
* *
4016273 TCAAA-ATTTCTTATTTGAAT
1 TCAAAGA-TTCTCATCTGAAT
*
4016293 TCGAAGATTC
1 TCAAAGATTC
4016303 ACATTCAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (20 bp):
TCAAAGATTCTCATCTGAAT
Found at i:4016315 original size:79 final size:79
Alignment explanation
Indices: 4016231--4016386 Score: 228
Period size: 79 Copynumber: 2.0 Consensus size: 79
4016221 TTCTCATTTG
* *
4016231 ACAAATTTTGAGTTTCACACC-TCAAAGATTCTCATCTGAAATTCAAA-ATTTCTTATTTGA-AT
1 ACAAATTTTGAGTTTCACACCTTC-AAGATTCTCATCTGAAATTCAAAGA-TTCTCATTTGACAC
4016293 TCGAAGATTCACATTCA
64 TC-AAGATTCACATTCA
*
4016310 ACAAATTTTGAGTTTCACACCTTCAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGACACTC
1 ACAAATTTTGAGTTTCACACCTTCAAGATTCTCATCTGAAATTCAAAGATTCTCATTTGACACTC
*
4016375 AAGATTCTCATT
66 AAGATTCACATT
4016387 TAAGGATTTC
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
79 64 0.91
80 6 0.09
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (79 bp):
ACAAATTTTGAGTTTCACACCTTCAAGATTCTCATCTGAAATTCAAAGATTCTCATTTGACACTC
AAGATTCACATTCA
Found at i:4016340 original size:38 final size:38
Alignment explanation
Indices: 4016179--4016345 Score: 126
Period size: 38 Copynumber: 4.3 Consensus size: 38
4016169 TTTGAATTTG
* * * *
4016179 AAGATTCACATTCGACAAATTTTGGGTTTCATACCTCA
1 AAGATTCTCATTCAACAAATTTTGAGTTTCACACCTCA
* **
4016217 AAAATTCTCATTTGACAAATTTTGAGTTTCACACCTCA
1 AAGATTCTCATTCAACAAATTTTGAGTTTCACACCTCA
* * * * *
4016255 AAGATTCTCATCTGAAATTCAAAATTTCTTA-TTTGA-A-TTCG
1 AAGATTCTCAT-T-CAA--C-AAATTT-TGAGTTTCACACCTCA
*
4016296 AAGATTCACATTCAACAAATTTTGAGTTTCACACCTTC-
1 AAGATTCTCATTCAACAAATTTTGAGTTTCACACC-TCA
4016334 AAGATTCTCATT
1 AAGATTCTCATT
4016346 TGAAATTCAA
Statistics
Matches: 101, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
35 2 0.02
36 10 0.10
37 2 0.02
38 54 0.53
39 5 0.05
40 2 0.02
41 12 0.12
42 2 0.02
43 10 0.10
44 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (38 bp):
AAGATTCTCATTCAACAAATTTTGAGTTTCACACCTCA
Found at i:4016343 original size:117 final size:117
Alignment explanation
Indices: 4016137--4016348 Score: 320
Period size: 117 Copynumber: 1.8 Consensus size: 117
4016127 AATTCATCTT
* * * *
4016137 AAAGATTCTCATTTGAAACTCAAAGTTTTTCATTTGAATTTGAAGATTCACATTCGACAAATTTT
1 AAAGATTCTCATCTGAAACTCAAAATTTTTCATTTGAATTCGAAGATTCACATTCAACAAATTTT
* *
4016202 GGGTTTCATACCTCAAAAATTCTCATTTGACAAATTTTGAGTTTCACACCTC
66 GAGTTTCACACCTCAAAAATTCTCATTTGACAAATTTTGAGTTTCACACCTC
*
4016254 AAAGATTCTCATCTGAAATTCAAAATTTCTT-ATTTGAATTCGAAGATTCACATTCAACAAATTT
1 AAAGATTCTCATCTGAAACTCAAAATTT-TTCATTTGAATTCGAAGATTCACATTCAACAAATTT
*
4016318 TGAGTTTCACACCTTC-AAGATTCTCATTTGA
65 TGAGTTTCACACC-TCAAAAATTCTCATTTGA
4016349 AATTCAAAGA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
117 81 0.95
118 4 0.05
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (117 bp):
AAAGATTCTCATCTGAAACTCAAAATTTTTCATTTGAATTCGAAGATTCACATTCAACAAATTTT
GAGTTTCACACCTCAAAAATTCTCATTTGACAAATTTTGAGTTTCACACCTC
Found at i:4016359 original size:21 final size:21
Alignment explanation
Indices: 4016334--4016575 Score: 177
Period size: 21 Copynumber: 10.8 Consensus size: 21
4016324 TCACACCTTC
4016334 AAGATTCTCATTTGAAATTCA
1 AAGATTCTCATTTGAAATTCA
* *
4016355 AAGATTCTCATTTGACACTC-
1 AAGATTCTCATTTGAAATTCA
4016375 AAGATTCTCATTT-AAGGATTTCTTA
1 AAGATTCTCATTTGAA--A-TTC--A
4016400 AAGATTCTCATTTGAAGATGTCTTA
1 AAGATTCTCATTTGAA-AT-TC--A
* *
4016425 CAGATTCTCATTT-AAGACTCA
1 AAGATTCTCATTTGAA-ATTCA
*
4016446 AAGATTCTCATTTGAAACTCA
1 AAGATTCTCATTTGAAATTCA
*
4016467 AAGATTCTCATTTGAAAACGTCTTA
1 AAGATTCTCATTTG-AAA--T-TCA
* * *
4016492 AAGATTCTCATCTAAAAATCA
1 AAGATTCTCATTTGAAATTCA
*
4016513 AAAATTCTCATTTGAAAATATCTTA
1 AAGATTCTCATTTG-AAAT-TC--A
* *
4016538 AAGATTTTCATTT-AAGACTCA
1 AAGATTCTCATTTGAA-ATTCA
4016559 AAGATTCTCATTTGAAA
1 AAGATTCTCATTTGAAA
4016576 ATTTAAGACT
Statistics
Matches: 181, Mismatches: 21, Indels: 38
0.75 0.09 0.16
Matches are distributed among these distances:
19 1 0.01
20 13 0.07
21 78 0.43
22 12 0.07
23 8 0.04
24 9 0.05
25 58 0.32
26 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (21 bp):
AAGATTCTCATTTGAAATTCA
Found at i:4016407 original size:25 final size:25
Alignment explanation
Indices: 4016375--4016502 Score: 98
Period size: 25 Copynumber: 5.4 Consensus size: 25
4016365 TTTGACACTC
*
4016375 AAGATTCTCATTTAAGGATTTCTTA
1 AAGATTCTCATTTAAGGATGTCTTA
4016400 AAGATTCTCATTTGAA-GATGTCTTA
1 AAGATTCTCATTT-AAGGATGTCTTA
* *
4016425 CAGATTCTCATTTAA-GA---CTCA
1 AAGATTCTCATTTAAGGATGTCTTA
*
4016446 AAGATTCTCATTTGAA--A---CTCA
1 AAGATTCTCATTT-AAGGATGTCTTA
* *
4016467 AAGATTCTCATTTGAA-AACGTCTTA
1 AAGATTCTCATTT-AAGGATGTCTTA
4016492 AAGATTCTCAT
1 AAGATTCTCAT
4016503 CTAAAAATCA
Statistics
Matches: 92, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
21 36 0.39
22 3 0.03
24 4 0.04
25 47 0.51
26 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (25 bp):
AAGATTCTCATTTAAGGATGTCTTA
Found at i:4016495 original size:46 final size:45
Alignment explanation
Indices: 4016334--4016576 Score: 225
Period size: 46 Copynumber: 5.4 Consensus size: 45
4016324 TCACACCTTC
* *
4016334 AAGATTCTCATTTG-AAA-T-TCAAAGATTCTCATTTGACACTC-
1 AAGATTCTCATTTGAAAACTCTTAAAGATTCTCATTTGAAACTCA
** *
4016375 AAGATTCTCATTT-AAGGATTTCTTAAAGATTCTCATTTGAAGATGTCTTA
1 AAGATTCTCATTTGAA--AACTCTTAAAGATTCTCATTTGAA-A---CTCA
* *
4016425 CAGATTCTCATTT-AAGACTC--AAAGATTCTCATTTGAAACTCA
1 AAGATTCTCATTTGAAAACTCTTAAAGATTCTCATTTGAAACTCA
* * *
4016467 AAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATCTAAAAATCA
1 AAGATTCTCATTTGAAAAC-TCTTAAAGATTCTCATTTGAAACTCA
* * *
4016513 AAAATTCTCATTTGAAAATATCTTAAAGATTTTCATTT-AAGACTCA
1 AAGATTCTCATTTGAAAA-CTCTTAAAGATTCTCATTTGAA-ACTCA
4016559 AAGATTCTCATTTGAAAA
1 AAGATTCTCATTTGAAAA
4016577 TTTAAGACTT
Statistics
Matches: 166, Mismatches: 20, Indels: 27
0.78 0.09 0.13
Matches are distributed among these distances:
41 14 0.08
42 15 0.09
43 5 0.03
44 3 0.02
45 20 0.12
46 91 0.55
48 2 0.01
49 2 0.01
50 14 0.08
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (45 bp):
AAGATTCTCATTTGAAAACTCTTAAAGATTCTCATTTGAAACTCA
Found at i:4016541 original size:92 final size:93
Alignment explanation
Indices: 4016337--4016576 Score: 250
Period size: 92 Copynumber: 2.6 Consensus size: 93
4016327 CACCTTCAAG
* * **
4016337 ATTCTCATTTGAAAT-TC-AAAGATTCTCATTTGACACTC-AAGATTCTCATTT-AAGGATTTCT
1 ATTCTCATTTGAAATATCTAAAGATTCTCATTTGAAACTCAAAGATTCTCATTTGAA-AACGTCT
* ** * *
4016398 TAAAGATTCTCATTTGAAGATGTCTTACAG
65 TAAAGATTCTCATCTGAAGAAATC-TAAAA
*
4016428 ATTCTCATTT--AAGA-CTCAAAGATTCTCATTTGAAACTCAAAGATTCTCATTTGAAAACGTCT
1 ATTCTCATTTGAAATATCT-AAAGATTCTCATTTGAAACTCAAAGATTCTCATTTGAAAACGTCT
4016490 TAAAGATTCTCATCT-AA-AAATC-AAAA
65 TAAAGATTCTCATCTGAAGAAATCTAAAA
*
4016516 ATTCTCATTTGAAAATATCTTAAAGATTTTCATTT-AAGACTCAAAGATTCTCATTTGAAAA
1 ATTCTCATTTG-AAATATC-TAAAGATTCTCATTTGAA-ACTCAAAGATTCTCATTTGAAAA
4016577 TTTAAGACTT
Statistics
Matches: 126, Mismatches: 12, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
88 12 0.10
89 3 0.02
90 3 0.02
91 37 0.29
92 68 0.54
93 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (93 bp):
ATTCTCATTTGAAATATCTAAAGATTCTCATTTGAAACTCAAAGATTCTCATTTGAAAACGTCTT
AAAGATTCTCATCTGAAGAAATCTAAAA
Found at i:4016577 original size:67 final size:68
Alignment explanation
Indices: 4016334--4016577 Score: 227
Period size: 67 Copynumber: 3.6 Consensus size: 68
4016324 TCACACCTTC
* * * * *
4016334 AAGATTCTCATTTGAA-ATTCAAAGATTCTCATTTGACACTC-AAGATTCTCATTT-AAGGATTT
1 AAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAAAATCAAAGATTCTCATTTGAA-AATAT
4016396 CTTA
65 CTTA
* * *
4016400 AAGATTCTCATTTGAAGATGTCTTACAGATTCTCATTT-AAGACTCAAAGATTCTCATTTG--AA
1 AAGATTCTCATTTGAAGA---CTCAAAGATTCTCATTTGAA-AATCAAAGATTCTCATTTGAAAA
*
4016462 -A-CTCA
62 TATCTTA
* * * *
4016467 AAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATCTAAAAATCAAAAATTCTCATTTGAAAAT
1 AAGATTCTCATTTGAAGAC-TC--AAAGATTCTCATTTGAAAATCAAAGATTCTCATTTGAAAAT
4016532 ATCTTA
63 ATCTTA
*
4016538 AAGATTTTCATTT-AAGACTCAAAGATTCTCATTTGAAAAT
1 AAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAAAAT
4016578 TTAAGACTTC
Statistics
Matches: 145, Mismatches: 18, Indels: 29
0.76 0.09 0.15
Matches are distributed among these distances:
64 1 0.01
65 1 0.01
66 16 0.11
67 68 0.47
68 2 0.01
69 6 0.04
70 23 0.16
71 28 0.19
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (68 bp):
AAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAAAATCAAAGATTCTCATTTGAAAATATC
TTA
Found at i:4017394 original size:4 final size:4
Alignment explanation
Indices: 4017385--4017411 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
4017375 TTAAGCACAT
4017385 ATTC ATTC ATTC ATTC ATTC ATTC ATT
1 ATTC ATTC ATTC ATTC ATTC ATTC ATT
4017412 ATCATTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTC
Found at i:4017822 original size:9 final size:9
Alignment explanation
Indices: 4017800--4017882 Score: 60
Period size: 9 Copynumber: 8.9 Consensus size: 9
4017790 CTTGTCATCT
4017800 TTTTTTTTC
1 TTTTTTTTC
* *
4017809 ATTTTTCTC
1 TTTTTTTTC
4017818 TTTTTTTTC
1 TTTTTTTTC
4017827 TTTCATTTTTC
1 TTT--TTTTTC
**
4017838 ATTTTCATT-
1 -TTTTTTTTC
**
4017847 TTCATTTTC
1 TTTTTTTTC
*
4017856 TTTCATTTTC
1 TTT-TTTTTC
4017866 TTTTTTTTC
1 TTTTTTTTC
4017875 TTTTTTTT
1 TTTTTTTT
4017883 TCATCTTTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
8 4 0.07
9 32 0.56
10 12 0.21
11 6 0.11
12 3 0.05
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:4017835 original size:10 final size:10
Alignment explanation
Indices: 4017822--4017877 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
4017812 TTTCTCTTTT
4017822 TTTTCTTTCA
1 TTTTCTTTCA
4017832 --TT-TTTCA
1 TTTTCTTTCA
4017839 TTTTCATTTTCA
1 TTTTC--TTTCA
4017851 TTTTCTTTCA
1 TTTTCTTTCA
*
4017861 TTTTCTTT-T
1 TTTTCTTTCA
4017870 TTTTCTTT
1 TTTTCTTT
4017878 TTTTTTCATC
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
7 5 0.12
8 2 0.05
9 10 0.25
10 13 0.32
12 10 0.25
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTCTTTCA
Found at i:4017840 original size:29 final size:29
Alignment explanation
Indices: 4017803--4017882 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
4017793 GTCATCTTTT
4017803 TTTTTCATTTTTCTCTTTTTTTTCTTTCA
1 TTTTTCATTTTTCTCTTTTTTTTCTTTCA
*
4017832 TTTTTCA-TTTTCAT-TTTCATTTTCTTTCA
1 TTTTTCATTTTTC-TCTTT-TTTTTCTTTCA
* *
4017861 -TTTTCTTTTTTTTCTTTTTTTT
1 TTTTTCATTTTTCTCTTTTTTTT
4017883 TCATCTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 18 0.42
29 25 0.58
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (29 bp):
TTTTTCATTTTTCTCTTTTTTTTCTTTCA
Found at i:4017844 original size:6 final size:6
Alignment explanation
Indices: 4017827--4017869 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
4017817 CTTTTTTTTC
4017827 TTTCATT TTTCAT TTTCAT TTTCAT TTTC-- TTTCAT TTTC-T TTT
1 TTTCA-T TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
4017870 TTTTCTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.12
5 4 0.12
6 21 0.62
7 5 0.15
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTCAT
Found at i:4017848 original size:12 final size:11
Alignment explanation
Indices: 4017833--4017878 Score: 62
Period size: 12 Copynumber: 4.4 Consensus size: 11
4017823 TTTCTTTCAT
4017833 TTTTCATTTTC
1 TTTTCATTTTC
4017844 ATTTTCATTTTC
1 -TTTTCATTTTC
4017856 -TTTCATTTTC
1 TTTTCATTTTC
4017866 TTTT--TTTTC
1 TTTTCATTTTC
4017875 TTTT
1 TTTT
4017879 TTTTTCATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.27
10 10 0.30
11 3 0.09
12 11 0.33
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTCATTTTC
Found at i:4017861 original size:16 final size:15
Alignment explanation
Indices: 4017818--4017884 Score: 61
Period size: 14 Copynumber: 4.7 Consensus size: 15
4017808 CATTTTTCTC
4017818 TTTT-TTTTCTTTCA
1 TTTTCTTTTCTTTCA
**
4017832 TTTT-TCAT-TTTCA
1 TTTTCTTTTCTTTCA
4017845 TTTTCATTTTCTTTCA
1 TTTTC-TTTTCTTTCA
*
4017861 TTTTCTTTTTTTTC-
1 TTTTCTTTTCTTTCA
*
4017875 TTTTTTTTTC
1 TTTTCTTTTC
4017885 ATCTTTTTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
13 9 0.21
14 14 0.33
15 10 0.23
16 10 0.23
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTCTTTTCTTTCA
Found at i:4017883 original size:29 final size:27
Alignment explanation
Indices: 4017803--4017891 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 27
4017793 GTCATCTTTT
4017803 TTTTTCATTTTTCTCTTTTTTTTCTTTCA
1 TTTTTC-TTTTTCT-TTTTTTTTCTTTCA
* *
4017832 TTTTTCATTTTCATTTTCATTTTCTTTCA
1 TTTTTCTTTTTC-TTTT-TTTTTCTTTCA
4017861 -TTTTCTTTTT-TTTCTTTTTT-TTTCA
1 TTTTTCTTTTTCTTT-TTTTTTCTTTCA
4017886 TCTTTT
1 T-TTTT
4017892 TCCATCCATT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
25 5 0.10
26 7 0.14
27 5 0.10
28 17 0.33
29 17 0.33
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (27 bp):
TTTTTCTTTTTCTTTTTTTTTCTTTCA
Found at i:4017889 original size:22 final size:22
Alignment explanation
Indices: 4017778--4017892 Score: 76
Period size: 22 Copynumber: 5.1 Consensus size: 22
4017768 TCAATTTGAG
* *
4017778 TTTTCTCTTTTTCTTGTCATC-T
1 TTTTTTCTTTTT-TTTTCATCTT
**
4017800 TTTTTT-TTCATTTTTC-TCTT
1 TTTTTTCTTTTTTTTTCATCTT
*
4017820 TTTTTTCTTTCATTTTTCAT-TT
1 TTTTTTCTTT-TTTTTTCATCTT
* * *
4017842 TCATTTTCATTTTCTTTCATTTTCTT
1 T-TTTTTCTTTTTTTTTCA---TCTT
4017868 TTTTTTCTTTTTTTTTCATCTT
1 TTTTTTCTTTTTTTTTCATCTT
4017890 TTT
1 TTT
4017893 CCATCCATTA
Statistics
Matches: 72, Mismatches: 12, Indels: 18
0.71 0.12 0.18
Matches are distributed among these distances:
19 2 0.03
20 11 0.15
21 5 0.07
22 28 0.39
23 8 0.11
25 15 0.21
26 3 0.04
ACGTcount: A:0.07, C:0.17, G:0.01, T:0.76
Consensus pattern (22 bp):
TTTTTTCTTTTTTTTTCATCTT
Found at i:4018264 original size:17 final size:17
Alignment explanation
Indices: 4018242--4018274 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4018232 TTTGTGGTAA
*
4018242 TTTTTTTTCTTTCTTTC
1 TTTTTTTTCTATCTTTC
4018259 TTTTTTTTCTATCTTT
1 TTTTTTTTCTATCTTT
4018275 GAGACCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTTCTATCTTTC
Found at i:4018806 original size:23 final size:23
Alignment explanation
Indices: 4018779--4018839 Score: 122
Period size: 23 Copynumber: 2.7 Consensus size: 23
4018769 TCATATTGTA
4018779 TAAAAGAAATCCTAATATTATTT
1 TAAAAGAAATCCTAATATTATTT
4018802 TAAAAGAAATCCTAATATTATTT
1 TAAAAGAAATCCTAATATTATTT
4018825 TAAAAGAAATCCTAA
1 TAAAAGAAATCCTAA
4018840 AATGACACGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (23 bp):
TAAAAGAAATCCTAATATTATTT
Found at i:4021999 original size:58 final size:59
Alignment explanation
Indices: 4021851--4022045 Score: 232
Period size: 58 Copynumber: 3.3 Consensus size: 59
4021841 TCTTGATAAT
* * * * **
4021851 TTTTATTTTTAAGAAAAATTGATACTTCCAACTTTTCCTCAAAATG-TTTTATTTTCTGAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAA-GATATT-TTTT-AAAAA
*
4021912 TTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTTCT-AAAAGATATTTTTTAAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAGATATTTTTTAAAAA
* * * *
4021970 TTTTATTTTCGAGGAAAATTGATACTTTCAACTTTTTCTCAAAATATATTTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAGATA-TTTTTTAAAAA
*
4022030 TTTTATTTTCACGAAA
1 TTTTATTTTCAAGAAA
4022046 CTTTTAACTT
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
58 39 0.34
59 12 0.10
60 30 0.26
61 35 0.30
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (59 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAGATATTTTTTAAAAA
Found at i:4022794 original size:20 final size:20
Alignment explanation
Indices: 4022767--4022817 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
4022757 ATTTTTTGTT
*
4022767 TTTTTCTTTTTGTTTTT-TA
1 TTTTTCTTTTTGTTTTTGCA
*
4022786 TTTTCTCTTTCTGTTTTTGCA
1 TTTT-TCTTTTTGTTTTTGCA
4022807 TTTTTCTTTTT
1 TTTTTCTTTTT
4022818 TGTTCTGTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.15
20 18 0.67
21 5 0.19
ACGTcount: A:0.04, C:0.12, G:0.06, T:0.78
Consensus pattern (20 bp):
TTTTTCTTTTTGTTTTTGCA
Found at i:4025094 original size:2 final size:2
Alignment explanation
Indices: 4025087--4025113 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4025077 ATGAGCTTTG
4025087 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4025114 GTTAATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4027999 original size:33 final size:33
Alignment explanation
Indices: 4027962--4028060 Score: 180
Period size: 33 Copynumber: 3.0 Consensus size: 33
4027952 TATTCCTTAC
* *
4027962 ATGAACATAAGTTTAGTTTATACCATGATCATT
1 ATGAACATGAGTTTAGTTTATACCATAATCATT
4027995 ATGAACATGAGTTTAGTTTATACCATAATCATT
1 ATGAACATGAGTTTAGTTTATACCATAATCATT
4028028 ATGAACATGAGTTTAGTTTATACCATAATCATT
1 ATGAACATGAGTTTAGTTTATACCATAATCATT
4028061 GTTTTTATGT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (33 bp):
ATGAACATGAGTTTAGTTTATACCATAATCATT
Found at i:4028582 original size:2 final size:2
Alignment explanation
Indices: 4028575--4028619 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
4028565 TGAAGTGAAA
* * *
4028575 AT AT AT AT AT AT AT GT AT AT AA AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4028617 AT A
1 AT A
4028620 GACTTTGAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4029636 original size:26 final size:26
Alignment explanation
Indices: 4029607--4029658 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
4029597 TAAGAACTCA
* *
4029607 TAAATACCCTAAAGTTATTGTTTTGG
1 TAAATACCATAAAGGTATTGTTTTGG
* *
4029633 TAAATGCTATAAAGGTATTGTTTTGG
1 TAAATACCATAAAGGTATTGTTTTGG
4029659 AGATATCATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (26 bp):
TAAATACCATAAAGGTATTGTTTTGG
Found at i:4034817 original size:21 final size:21
Alignment explanation
Indices: 4034793--4034844 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
4034783 AAAATTAAAT
4034793 TTAAATAAAAACATATTCTCA
1 TTAAATAAAAACATATTCTCA
* * * *
4034814 TT-AAGAAAAATATTTTCTGA
1 TTAAATAAAAACATATTCTCA
*
4034834 TTAAATCAAAA
1 TTAAATAAAAA
4034845 TTTGAACTTG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (21 bp):
TTAAATAAAAACATATTCTCA
Found at i:4036292 original size:21 final size:21
Alignment explanation
Indices: 4036254--4036293 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4036244 CTTGCAATAA
*
4036254 TTATTGTCACTAATAAATTAG
1 TTATTGTCACTAAAAAATTAG
4036275 TTATTGTCAC-AACAAAATT
1 TTATTGTCACTAA-AAAATT
4036294 CGTCAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (21 bp):
TTATTGTCACTAAAAAATTAG
Found at i:4039635 original size:3 final size:3
Alignment explanation
Indices: 4039627--4039670 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
4039617 ATATTTATGG
4039627 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
4039671 CATGAACACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4041015 original size:14 final size:15
Alignment explanation
Indices: 4040988--4041017 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4040978 CAATTTATTC
4040988 ATTTTATCAGTGACA
1 ATTTTATCAGTGACA
4041003 ATTTTAT-AGTGACA
1 ATTTTATCAGTGACA
4041017 A
1 A
4041018 AAAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (15 bp):
ATTTTATCAGTGACA
Found at i:4042716 original size:8 final size:8
Alignment explanation
Indices: 4042694--4042724 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
4042684 ATTCACAAAC
4042694 TAAATATT
1 TAAATATT
4042702 ATAAATATT
1 -TAAATATT
4042711 TAAATATT
1 TAAATATT
4042719 TAAATA
1 TAAATA
4042725 CATAACTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TAAATATT
Found at i:4047033 original size:25 final size:23
Alignment explanation
Indices: 4046998--4047045 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
4046988 TGAATGGCAA
*
4046998 TTTGGAAAAGAAAATAGCATGGG
1 TTTGGAAAAGAAAAAAGCATGGG
*
4047021 TTTGGAGAGAAGAAAAAAGCCTGGG
1 TTTGGA-A-AAGAAAAAAGCATGGG
4047046 AAAGGAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 6 0.29
24 1 0.05
25 14 0.67
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.19
Consensus pattern (23 bp):
TTTGGAAAAGAAAAAAGCATGGG
Found at i:4047351 original size:25 final size:24
Alignment explanation
Indices: 4047323--4047369 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
4047313 AAAGAAATTA
4047323 TTAAAAAATTTTATTTATTTTATAT
1 TTAAAAAATTTT-TTTATTTTATAT
*
4047348 TTAATAAATTTTTTTATTTTAT
1 TTAAAAAATTTTTTTATTTTAT
4047370 TCGACGACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
TTAAAAAATTTTTTTATTTTATAT
Found at i:4049245 original size:17 final size:17
Alignment explanation
Indices: 4049219--4049253 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4049209 TAATTTTAAA
*
4049219 ATAAATATATTTAAAAT
1 ATAAAAATATTTAAAAT
*
4049236 ATAAAAATATTTTAAAT
1 ATAAAAATATTTAAAAT
4049253 A
1 A
4049254 ATATTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAAAAATATTTAAAAT
Found at i:4049436 original size:16 final size:16
Alignment explanation
Indices: 4049415--4049581 Score: 58
Period size: 16 Copynumber: 10.5 Consensus size: 16
4049405 GATCGTTTGG
4049415 AATTATTTTAGATTTA
1 AATTATTTTAGATTTA
***
4049431 AATTATTTT-GAAACGA
1 AATTATTTTAG-ATTTA
* * *
4049447 AATAATTTAAAATTT-
1 AATTATTTTAGATTTA
* * * *
4049462 GATTAATTTAAATTTG
1 AATTATTTTAGATTTA
*
4049478 AATTATTTTAAATTTA
1 AATTATTTTAGATTTA
* * * *
4049494 GATCAATTTATATTTA
1 AATTATTTTAGATTTA
4049510 AATTATTTTTAG-TTTA
1 AATTA-TTTTAGATTTA
* * *
4049526 AGTAATTTTAGGA-TTG
1 AATTATTTTA-GATTTA
* *
4049542 AATAATTCT-GATTTCA
1 AATTATTTTAGATTT-A
*
4049558 AGTTATTTTA-ATTTA
1 AATTATTTTAGATTTA
4049573 GAATTATTT
1 -AATTATTT
4049582 AAATTAATTC
Statistics
Matches: 107, Mismatches: 34, Indels: 20
0.66 0.21 0.12
Matches are distributed among these distances:
14 2 0.02
15 20 0.19
16 81 0.76
17 4 0.04
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.51
Consensus pattern (16 bp):
AATTATTTTAGATTTA
Found at i:4049488 original size:32 final size:32
Alignment explanation
Indices: 4049446--4049518 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
4049436 TTTTGAAACG
* * *
4049446 AAATAATTTAAAATTT-GATTAATTTAAATTT
1 AAATTATTTTAAATTTAGATCAATTTAAATTT
* *
4049477 GAATTATTTTAAATTTAGATCAATTTATATTT
1 AAATTATTTTAAATTTAGATCAATTTAAATTT
4049509 AAATTATTTT
1 AAATTATTTT
4049519 TAGTTTAAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
31 13 0.37
32 22 0.63
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (32 bp):
AAATTATTTTAAATTTAGATCAATTTAAATTT
Found at i:4049590 original size:20 final size:21
Alignment explanation
Indices: 4049565--4049607 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
4049555 TCAAGTTATT
*
4049565 TTAATT-TAGAATTATTTAAA
1 TTAATTCTAGAATCATTTAAA
*
4049585 TTAATTCTCGAATCATTTAAA
1 TTAATTCTAGAATCATTTAAA
4049606 TT
1 TT
4049608 TAACACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.49
Consensus pattern (21 bp):
TTAATTCTAGAATCATTTAAA
Found at i:4052220 original size:12 final size:12
Alignment explanation
Indices: 4052205--4052231 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
4052195 AAGCATAGGG
4052205 CCATCCCACAGC
1 CCATCCCACAGC
4052217 CCATCCCACAGC
1 CCATCCCACAGC
4052229 CCA
1 CCA
4052232 GGTCTGCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.59, G:0.07, T:0.07
Consensus pattern (12 bp):
CCATCCCACAGC
Found at i:4055414 original size:22 final size:24
Alignment explanation
Indices: 4055389--4055433 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
4055379 TTATCTTAAA
*
4055389 ATTTA-TTTAAATTTTAA-ATTTT
1 ATTTATTTTAAATTATAATATTTT
4055411 ATTTATTTTAAATTATAATATTT
1 ATTTATTTTAAATTATAATATTT
4055434 GATAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 11 0.55
24 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTTATTTTAAATTATAATATTTT
Found at i:4055420 original size:16 final size:16
Alignment explanation
Indices: 4055378--4055424 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
4055368 CGCCATCAAG
* *
4055378 TTTATCTTAAAATTTA
1 TTTATTTTAAATTTTA
4055394 TTTAAATTTTAAATTTTA
1 TTT--ATTTTAAATTTTA
4055412 TTTATTTTAAATT
1 TTTATTTTAAATT
4055425 ATAATATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.48
18 14 0.52
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATTTTAAATTTTA
Found at i:4055790 original size:17 final size:16
Alignment explanation
Indices: 4055758--4055804 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
4055748 ACATTATATC
4055758 TAAAAATTTT-AAAAA
1 TAAAAATTTTAAAAAA
4055773 TAAAAATTTTTAAAAAA
1 TAAAAA-TTTTAAAAAA
4055790 TAGAAAATTTTAAAA
1 TA-AAAATTTTAAAA
4055805 TTTATTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.21
16 4 0.14
17 15 0.52
18 4 0.14
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (16 bp):
TAAAAATTTTAAAAAA
Found at i:4055814 original size:101 final size:100
Alignment explanation
Indices: 4055519--4056009 Score: 356
Period size: 100 Copynumber: 4.9 Consensus size: 100
4055509 TTATTAATTT
* * *
4055519 TAAAAGCTAGATAAAATAGAAAAAATAT-ATTATATTTAAAAATTTTAAAAAGAACAAAAGCTTC
1 TAAAA-CTAGATAAAATATATAAAATATAATTATATTTAAAAATTTT-AAAA-AA-AAAA-CTTA
* ** * * *
4055583 TTAAAAGTA-AAAAACTTAAAATTTATTTGTTTTAGACCA
61 TTAAAAATAGAAAATTTTAAAATTTATTTATTTTAAACTA
* * * *
4055622 TAGAATTTGATAAAATATATTAAAACTAT-ATTATATTTCAAAAA-ATTAAAAAAAAAACTTATT
1 TAAAACTAGATAAAATATA-TAAAA-TATAATTATATTT-AAAAATTTTAAAAAAAAAACTTATT
* * * *
4055685 GAAAA-AGAAAATTTTGAACTTTATTTATTTTAAATTA
63 AAAAATAGAAAATTTTAAAATTTATTTATTTTAAACTA
* *
4055722 TAAAACTAGATAAAATATA-AAAATATACATTATATCTAAAAATTTTAAAAATAAAAA-TTTTTA
1 TAAAACTAGATAAAATATATAAAATATA-ATTATATTTAAAAATTTTAAAAA-AAAAACTTATT-
4055785 AAAAATAGAAAATTTTAAAATTTATTTATTTTAAACTA
63 AAAAATAGAAAATTTTAAAATTTATTTATTTTAAACTA
* * * * * *
4055823 TAATATTTGATAAAATATATAAAAAAATATATTGTATTTAAAAA----ACAAAAAAAACTTATTA
1 TAAAACTAGATAAAATATAT-AAAATATA-ATTATATTTAAAAATTTTAAAAAAAAAACTTATTA
* *
4055884 AAAA-AGAAAAAATTGAAAA-TTATTTATTTTAAA-TA
64 AAAATAG-AAAATTTTAAAATTTATTTATTTTAAACTA
* * * * * *
4055919 TAATATTTGAT-AAATCATATTAAAAATATATATTATTTTTTAAAAA---TAGAAAAAAAACTTC
1 TAAAACTAGATAAAAT-ATA-T-AAAATATA-ATTA-TATTTAAAAATTTTAAAAAAAAAACTTA
*
4055980 TT-AAAATAGAAAA-TTTAAAAGCTTATTTAT
61 TTAAAAATAGAAAATTTTAAAA-TTTATTTAT
4056010 ATAAATTATA
Statistics
Matches: 323, Mismatches: 44, Indels: 46
0.78 0.11 0.11
Matches are distributed among these distances:
95 4 0.01
96 16 0.05
97 38 0.12
98 46 0.14
99 52 0.16
100 55 0.17
101 49 0.15
102 13 0.04
103 31 0.10
104 14 0.04
105 5 0.02
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (100 bp):
TAAAACTAGATAAAATATATAAAATATAATTATATTTAAAAATTTTAAAAAAAAAACTTATTAAA
AATAGAAAATTTTAAAATTTATTTATTTTAAACTA
Found at i:4056058 original size:98 final size:96
Alignment explanation
Indices: 4055561--4056141 Score: 441
Period size: 99 Copynumber: 5.9 Consensus size: 96
4055551 TATTTAAAAA
* * * * ** * * **
4055561 TTTTAAAAAGAACAAAAGCTTCTTAAAAGTA-AAAAACTTAAAATTTATTTGTTTTAGACCATAG
1 TTTTAAAAAAAAAAAAAACTTATTAAAA-TAGAAAATTTTAAAATTTATTTATTTTAAATTATA-
*
4055625 A-ATTTGATAAAATATATTAAAACTATATTATAT-T
64 ATATTTGAT-AAATATATTAAAAATATA-TAT-TGT
*** * *
4055659 TCAAAAAATTAAAAAAAAAACTTATTGAAAA-AGAAAATTTTGAACTTTATTTATTTTAAATTAT
1 TTTTAAAA--AAAAAAAAAACTTATT-AAAATAGAAAATTTTAAAATTTATTTATTTTAAATTAT
* * * * *
4055723 AAAACTAGATAAA-ATA-TAAAAATATACATTAT
63 AATATTTGATAAATATATTAAAAATATATATTGT
* * * *
4055755 ATCTAAAAATTTTAAAAATAAAAATTTTTAAAAAATAGAAAATTTTAAAATTTATTTATTTTAAA
1 TTTTAAAAA----AAAAA-AAAACTTATT--AAAATAGAAAATTTTAAAATTTATTTATTTTAAA
* *
4055820 CTATAATATTTGATAAA-ATATATAAAAAAATATATTGT
59 TTATAATATTTGATAAATATAT-TAAAAATATATATTGT
* * * *
4055858 ATTTAAAAAACAAAAAAAACTTATTAAAAAAGAAAAAATTGAAAA-TTATTTATTTTAAA-TATA
1 TTTTAAAAAA-AAAAAAAACTTATTAAAATAG-AAAATTTTAAAATTTATTTATTTTAAATTATA
*
4055921 ATATTTGATAAATCATATTAAAAATATATATTATT
64 ATATTTGATAAAT-ATATTAAAAATATATATT-GT
* * *
4055956 TTTTAAAAATAGAAAAAAAACTTCTTAAAATAGAAAA-TTTAAAAGCTTATTTA-TATAAATTAT
1 TTTTAAAAA-A-AAAAAAAACTTATTAAAATAGAAAATTTTAAAA-TTTATTTATTTTAAATTAT
* *
4056019 AATATTTGATAAATACATTAAAAATCTATATTGT
63 AATATTTGATAAATATATTAAAAATATATATTGT
** * *
4056053 GTTTTAAACAACAAAAAATTA-TTTTTAAAATA-AAATATTTTGAAATTTTATTTATTTTAAATT
1 -TTTTAAA-AA-AAAAAAAAACTTATTAAAATAGAAA-ATTTT-AAAATTTATTTATTTTAAATT
4056116 ATAATATTTGATCAAATATATTAAAA
61 ATAATATTTGAT-AAATATATTAAAA
4056142 TATTTTTAAA
Statistics
Matches: 392, Mismatches: 60, Indels: 60
0.77 0.12 0.12
Matches are distributed among these distances:
94 1 0.00
95 1 0.00
96 26 0.07
97 60 0.15
98 84 0.21
99 91 0.23
100 61 0.16
101 47 0.12
103 21 0.05
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (96 bp):
TTTTAAAAAAAAAAAAAACTTATTAAAATAGAAAATTTTAAAATTTATTTATTTTAAATTATAAT
ATTTGATAAATATATTAAAAATATATATTGT
Found at i:4057141 original size:22 final size:21
Alignment explanation
Indices: 4057082--4057141 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
4057072 GAACTAACCT
*
4057082 TATGAATTA-AAACATACAAC
1 TATGAATTATAAACAAACAAC
*
4057102 TATCAATT-TAAAAGCAAACAAC
1 TATGAATTAT-AAA-CAAACAAC
4057124 ATATGAATTATAAACAAA
1 -TATGAATTATAAACAAA
4057142 TTCAAATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
20 7 0.22
21 3 0.09
22 11 0.34
23 10 0.31
24 1 0.03
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (21 bp):
TATGAATTATAAACAAACAAC
Found at i:4059709 original size:48 final size:49
Alignment explanation
Indices: 4059653--4059842 Score: 203
Period size: 48 Copynumber: 4.0 Consensus size: 49
4059643 AAGGCTCTTC
* * *
4059653 ATCTTGAAAAAGCTCCTCTTAGTAGAGGCTCGACAACTTTAAAAATCTC
1 ATCTTGAAAAAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATCTA
* * * *
4059702 AT-ATGAAAAAGCTCATCTAAGAAGAGGCTCAACAACTTT-AAAATACTA
1 ATCTTGAAAAAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAAT-CTA
* *
4059750 ATCTTGAAAATAGCTCCTC-T-GCATAGGCTCAACAACTTTAAAAAT-TT
1 ATCTTGAAAA-AGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATCTA
* ** *
4059797 ATCTTG-AAAATCTCCTCCCAGCAGAGGCTCAACAATTTTAAAAATC
1 ATCTTGAAAAAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATC
4059843 CAATATGTTC
Statistics
Matches: 118, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
45 7 0.06
46 3 0.03
47 35 0.30
48 53 0.45
49 13 0.11
50 7 0.06
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (49 bp):
ATCTTGAAAAAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATCTA
Found at i:4063989 original size:56 final size:56
Alignment explanation
Indices: 4063902--4064085 Score: 246
Period size: 58 Copynumber: 3.2 Consensus size: 56
4063892 TCTTGTGTGG
*
4063902 GGAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTGAAAATTTAATTT-TAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTGAAAATTT-ATTTCTAA
* *
4063958 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-ATCCCCTTTTAAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAATAT---TTTTTGAAAATTTATTTCTAA
* *
4064016 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-TCAAAAT-ATTTTTTGAAAATTT-ATTTCTAA
4064075 GGAAAATTGAT
1 GGAAAATTGAT
4064086 GATTTCCAAG
Statistics
Matches: 113, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
55 2 0.02
56 31 0.27
57 4 0.04
58 51 0.45
59 23 0.20
61 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTGAAAATTTATTTCTAA
Found at i:4064104 original size:137 final size:138
Alignment explanation
Indices: 4063956--4064223 Score: 484
Period size: 137 Copynumber: 1.9 Consensus size: 138
4063946 ATTTAATTTT
*
4063956 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCCTTTTAAAAATTTATTTCTAAGGAAA
1 AAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCCTTTTAAAAATTTATTTCTAAGGAAA
*
4064021 ATTGATACTTTCAACTTTTCCTTAAAAATA-ATTTTTTGAAAATTTGATTTCCAAGGAAAATTGA
66 ATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGAAAATTTGATTTCCAAGGAAAATTGA
4064085 TGATTTCC
131 TGATTTCC
* *
4064093 AAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAA
1 AAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCCTTTTAAAAATTTATTTCTAAGGAAA
*
4064158 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTGATTTCCAAGGAAAATTGA
66 ATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGAAAATTTGATTTCCAAGGAAAATTGA
4064223 T
131 T
4064224 ACTTTCAACT
Statistics
Matches: 125, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
137 91 0.73
138 34 0.27
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (138 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCCTTTTAAAAATTTATTTCTAAGGAAA
ATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGAAAATTTGATTTCCAAGGAAAATTGA
TGATTTCC
Found at i:4064111 original size:20 final size:20
Alignment explanation
Indices: 4064065--4064105 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
4064055 TTTGAAAATT
4064065 TGATTTCCAAGGAAAATTGA
1 TGATTTCCAAGGAAAATTGA
4064085 TGATTTCCAAGGAAAATTGA
1 TGATTTCCAAGGAAAATTGA
4064105 T
1 T
4064106 ACTTTCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
TGATTTCCAAGGAAAATTGA
Found at i:4064139 original size:79 final size:78
Alignment explanation
Indices: 4064008--4064163 Score: 249
Period size: 79 Copynumber: 2.0 Consensus size: 78
4063998 TTAAAAATTT
* * *
4064008 ATTTCTAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTTTGAAAATTTGATTTCC
1 ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATAACTTTTTGAAAATTT-ATTTCC
4064073 AAGGAAAATTGATG
65 AAGGAAAATTGATG
** *
4064087 ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTTATTTCTA
1 ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATAACTTTTTGAAAATTTATTTCCA
4064152 AGGAAAATTGAT
66 AGGAAAATTGAT
4064164 ACTTTCAACT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 18 0.25
79 53 0.75
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (78 bp):
ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATAACTTTTTGAAAATTTATTTCCA
AGGAAAATTGATG
Found at i:4064350 original size:119 final size:118
Alignment explanation
Indices: 4064085--4064446 Score: 670
Period size: 119 Copynumber: 3.1 Consensus size: 118
4064075 GGAAAATTGA
*
4064085 TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTTATTTC
1 TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTC
*
4064150 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATT
66 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAGAATT
4064203 TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTC
1 TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTC
4064268 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAGAATT
66 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGAGAATT
4064322 TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTC
1 TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTC
* *
4064387 TAAGGAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTTTGAGAGTTT
66 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAGA-ATT
4064441 TGATTT
1 TGATTT
4064447 TCATTTAAAG
Statistics
Matches: 238, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
118 114 0.48
119 124 0.52
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (118 bp):
TGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTC
TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAGAATT
Found at i:4064423 original size:58 final size:58
Alignment explanation
Indices: 4064087--4064422 Score: 503
Period size: 58 Copynumber: 5.7 Consensus size: 58
4064077 AAAATTGATG
4064087 ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTT
1 ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTT
* **
4064145 ATTTCTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATAT-TTTTTTTGAAAATTT
1 ATTTCCAAGGAAAATTGATACTTTCAACTTTT-CCTAAAAA-ATCCCTTTTTGAAAATTT
*
4064204 GATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTT
1 -ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTT
* *** *
4064263 ATTTCTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAGAATTT
1 ATTTCCAAGGAAAATTGATACTTTCAACTTTT-CCTAAAAA-ATCCCTTTTTGAAAATTT
*
4064323 GATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTT
1 -ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTT
*
4064382 ATTTCTAAGGAAAATTGATACTTTCAACTTTTCTCTAAAAA
1 ATTTCCAAGGAAAATTGATACTTTCAACTTTTC-CTAAAAA
4064423 TATTTTTTTT
Statistics
Matches: 249, Mismatches: 21, Indels: 15
0.87 0.07 0.05
Matches are distributed among these distances:
58 96 0.39
59 68 0.27
60 54 0.22
61 31 0.12
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (58 bp):
ATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTAAAAAATCCCTTTTTGAAAATTT
Found at i:4064475 original size:13 final size:13
Alignment explanation
Indices: 4064452--4064577 Score: 66
Period size: 13 Copynumber: 9.6 Consensus size: 13
4064442 GATTTTCATT
*
4064452 TAAAGAAAATAGAA
1 TAAATAAAATA-AA
4064466 T-AATAAAATAAA
1 TAAATAAAATAAA
*
4064478 TAAATAAAAAAAA
1 TAAATAAAATAAA
*
4064491 TAAAGAAAAGTAAA
1 TAAATAAAA-TAAA
*
4064505 -ACA-AAAATAAA
1 TAAATAAAATAAA
4064516 -AAA-AAAGATAAA
1 TAAATAAA-ATAAA
*
4064528 AAGAATATTAAATAAA
1 TA-AATA--AAATAAA
* **
4064544 CTTAATCTAATAAA
1 -TAAATAAAATAAA
4064558 -AAATAAAATAAA
1 TAAATAAAATAAA
*
4064570 CAAATAAA
1 TAAATAAA
4064578 CAAAGAAATG
Statistics
Matches: 89, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
11 9 0.10
12 21 0.24
13 36 0.40
14 12 0.13
15 1 0.01
16 8 0.09
17 2 0.02
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (13 bp):
TAAATAAAATAAA
Found at i:4064504 original size:10 final size:9
Alignment explanation
Indices: 4064470--4064520 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
4064460 ATAGAATAAT
4064470 AAAAT-AAA
1 AAAATAAAA
*
4064478 TAAATAAAA
1 AAAATAAAA
4064487 AAAATAAAGA
1 AAAATAAA-A
*
4064497 AAAGTAAAACA
1 AAAAT-AAA-A
4064508 AAAATAAAA
1 AAAATAAAA
4064517 AAAA
1 AAAA
4064521 AGATAAAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
8 4 0.11
9 15 0.43
10 8 0.23
11 8 0.23
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (9 bp):
AAAATAAAA
Found at i:4065457 original size:30 final size:27
Alignment explanation
Indices: 4065421--4065483 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 27
4065411 TCAAATAAAT
4065421 ATAAAAAAAATG-GATAATTAGAACGGATAA
1 ATAAAAAAAA-GAGAT-ATTA-AA-GGATAA
*
4065451 ATAAAAAAAAGAGATATTATAGGATAA
1 ATAAAAAAAAGAGATATTAAAGGATAA
4065478 ATAAAA
1 ATAAAA
4065484 TAACAGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 12 0.39
28 1 0.03
29 5 0.16
30 13 0.42
ACGTcount: A:0.63, C:0.02, G:0.14, T:0.21
Consensus pattern (27 bp):
ATAAAAAAAAGAGATATTAAAGGATAA
Found at i:4065475 original size:27 final size:29
Alignment explanation
Indices: 4065445--4065513 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 29
4065435 TAATTAGAAC
*
4065445 GGATAAATAAAA-AAAAGAGATATTA-TA
1 GGATAAATAAAATAAAAGAGATATAATTA
* *
4065472 GGATAAATAAAATAACAGATATATAATTA
1 GGATAAATAAAATAAAAGAGATATAATTA
4065501 -GATAAATAAAATA
1 GGATAAATAAAATA
4065514 TAAAATAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 12 0.32
28 23 0.62
29 2 0.05
ACGTcount: A:0.62, C:0.01, G:0.12, T:0.25
Consensus pattern (29 bp):
GGATAAATAAAATAAAAGAGATATAATTA
Found at i:4065540 original size:25 final size:26
Alignment explanation
Indices: 4065502--4065570 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 26
4065492 ATATAATTAG
*
4065502 ATAAATAAAATATAAAATAATAAT-A
1 ATAAATAAATTATAAAATAATAATAA
*
4065527 ATAAATAAATTATAATATAATAATAA
1 ATAAATAAATTATAAAATAATAATAA
* *
4065553 ATATATAACTATATAAAA
1 ATAAATAAAT-TATAAAA
4065571 ATACATATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 22 0.59
26 9 0.24
27 6 0.16
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (26 bp):
ATAAATAAATTATAAAATAATAATAA
Found at i:4065546 original size:22 final size:23
Alignment explanation
Indices: 4065492--4065555 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 23
4065482 AATAACAGAT
4065492 ATATAATTAGATAAATAAAATATAAA
1 ATATAA-TA-ATAAAT-AAATATAAA
*
4065518 ATAATAATAATAAATAAAT-TATA
1 AT-ATAATAATAAATAAATATAAA
4065541 ATATAATAATAAATA
1 ATATAATAATAAATA
4065556 TATAACTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 13 0.36
23 5 0.14
24 4 0.11
25 6 0.17
26 4 0.11
27 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATATAATAATAAATAAATATAAA
Found at i:4065566 original size:22 final size:21
Alignment explanation
Indices: 4065509--4065579 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
4065499 TAGATAAATA
*
4065509 AAATATAAAATA-ATAATAAT
1 AAATATATAATATATAATAAT
* *
4065529 AAATAAATTATAATATAATAAT
1 AAATATATAAT-ATATAATAAT
*
4065551 AAATATATAACTATATAAAAAT
1 AAATATATAA-TATATAATAAT
*
4065573 ACATATA
1 AAATATA
4065580 CATATTAACA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 8 0.20
21 1 0.02
22 31 0.76
23 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (21 bp):
AAATATATAATATATAATAAT
Found at i:4065656 original size:9 final size:9
Alignment explanation
Indices: 4065623--4065662 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
4065613 TAAATATATT
4065623 AATACATAA
1 AATACATAA
4065632 TAATA-AT-A
1 -AATACATAA
4065640 AATA-ATAA
1 AATACATAA
4065648 AATACATAA
1 AATACATAA
4065657 AATACA
1 AATACA
4065663 AAAGGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 6 0.21
8 6 0.21
9 12 0.43
10 4 0.14
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (9 bp):
AATACATAA
Found at i:4076853 original size:80 final size:80
Alignment explanation
Indices: 4076727--4076955 Score: 232
Period size: 80 Copynumber: 2.9 Consensus size: 80
4076717 AAATTAGGGT
* * ** *
4076727 AAAATTTTAAATTTTTGAATGCTCTCCAAGA-CTTTCTAGTAGAATTTTAAATTTTTG-AGTGA-
1 AAAATTTTAAAATTTTGAATGATCTCCAAGACCTTT-GGGTAGAATTTTAAATTTTTGAACT-AT
*
4076789 TCTCTAAGACCTTTAAGC
64 TCTC-AAGACCTTTAAGA
* * * ** *
4076807 AAAATTTTAAAATTTTGAATTATCTCCAAGACCTTTGGGCAAAATTTTAAAAATTTGAACTATTT
1 AAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGGGTAGAATTTTAAATTTTTGAACTATTC
*
4076872 TCAAGACCTTTAGGA
66 TCAAGACCTTTAAGA
* ** * * *
4076887 AAAATCTTAAAATTTTGAATGATCTTTAAGACCTTTGGGTAGAACTTTAAA-TTTTGAACGATTT
1 AAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGGGTAGAATTTTAAATTTTTGAACTATTC
4076951 TCAAG
66 TCAAG
4076956 TCTTTCAAAT
Statistics
Matches: 124, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 16 0.13
80 99 0.80
81 9 0.07
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (80 bp):
AAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGGGTAGAATTTTAAATTTTTGAACTATTC
TCAAGACCTTTAAGA
Found at i:4076918 original size:40 final size:40
Alignment explanation
Indices: 4076693--4076944 Score: 199
Period size: 40 Copynumber: 6.3 Consensus size: 40
4076683 AAGCAAAGTC
* * * **
4076693 TTAAATTTTTGAATGATGTTTAAGA-AATTAGGGTAAAATT
1 TTAAAATTTTGAATGATCTCTAAGACCTTTA-GGTAAAATT
* * * * *
4076733 TTAAATTTTTGAATGCTCTCCAAGACTTTCTA-GTAGAATT
1 TTAAAATTTTGAATGATCTCTAAGACCTT-TAGGTAAAATT
* * * *
4076773 TTAAATTTTTGAGTGATCTCTAAGACCTTTAAGCAAAATT
1 TTAAAATTTTGAATGATCTCTAAGACCTTTAGGTAAAATT
* * * *
4076813 TTAAAATTTTGAATTATCTCCAAGACCTTTGGGCAAAATT
1 TTAAAATTTTGAATGATCTCTAAGACCTTTAGGTAAAATT
* * * *
4076853 TTAAAAATTTGAACT-AT-TTTCAAGACCTTTAGGAAAAATC
1 TTAAAATTTTGAA-TGATCTCT-AAGACCTTTAGGTAAAATT
* * * *
4076893 TTAAAATTTTGAATGATCTTTAAGACCTTTGGGTAGAACT
1 TTAAAATTTTGAATGATCTCTAAGACCTTTAGGTAAAATT
4076933 TT-AAATTTTGAA
1 TTAAAATTTTGAA
4076945 CGATTTTCAA
Statistics
Matches: 174, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
39 14 0.08
40 153 0.88
41 5 0.03
42 2 0.01
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.40
Consensus pattern (40 bp):
TTAAAATTTTGAATGATCTCTAAGACCTTTAGGTAAAATT
Found at i:4077135 original size:41 final size:41
Alignment explanation
Indices: 4077030--4077136 Score: 119
Period size: 41 Copynumber: 2.6 Consensus size: 41
4077020 TTCCAACCAG
* *
4077030 GATTTGTAAGTCTTTCGAGTT-GAATCTATTTTTAGTGTCAT
1 GATTTGTAAGTCTTCCG-GTTATAATCTATTTTTAGTGTCAT
* * **
4077071 TATTTGTATGTCTTCTAAG-TATAATCTATTTTTAGTGTCAT
1 GATTTGTAAGTCTTC-CGGTTATAATCTATTTTTAGTGTCAT
*
4077112 GATTTGTAACTCTTCCGGTTATAAT
1 GATTTGTAAGTCTTCCGGTTATAAT
4077137 ATTTTAAATT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
40 2 0.04
41 50 0.96
ACGTcount: A:0.23, C:0.11, G:0.16, T:0.50
Consensus pattern (41 bp):
GATTTGTAAGTCTTCCGGTTATAATCTATTTTTAGTGTCAT
Found at i:4077222 original size:20 final size:20
Alignment explanation
Indices: 4077186--4077225 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4077176 CTCGGATGGC
*
4077186 CCAAAAAAAAGAGAAAAATT
1 CCAAAAAAAAGAAAAAAATT
4077206 CCAAAAAAGAA-AAAAAAATT
1 CCAAAAAA-AAGAAAAAAATT
4077226 ATTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.72, C:0.10, G:0.07, T:0.10
Consensus pattern (20 bp):
CCAAAAAAAAGAAAAAAATT
Found at i:4077665 original size:24 final size:24
Alignment explanation
Indices: 4077635--4077682 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
4077625 ACTAGCATGC
4077635 AAAAATGCAATAGAAA-AAAA-TGAA
1 AAAAATG-AAT-GAAACAAAAGTGAA
4077659 AAAAATGAATGAAACAAAAGTGAA
1 AAAAATGAATGAAACAAAAGTGAA
4077683 TGGGTGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.18
23 7 0.32
24 11 0.50
ACGTcount: A:0.69, C:0.04, G:0.15, T:0.12
Consensus pattern (24 bp):
AAAAATGAATGAAACAAAAGTGAA
Found at i:4077669 original size:13 final size:15
Alignment explanation
Indices: 4077653--4077684 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
4077643 AATAGAAAAA
4077653 AATGAAA-AAAA-TG
1 AATGAAACAAAAGTG
4077666 AATGAAACAAAAGTG
1 AATGAAACAAAAGTG
4077681 AATG
1 AATG
4077685 GGTGAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 4 0.24
15 6 0.35
ACGTcount: A:0.62, C:0.03, G:0.19, T:0.16
Consensus pattern (15 bp):
AATGAAACAAAAGTG
Found at i:4077848 original size:23 final size:24
Alignment explanation
Indices: 4077816--4077870 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
4077806 AGGAACTGAT
4077816 AATTGATGAATAAAT-GAAATGGAA
1 AATTGATGAA-AAATGGAAATGGAA
*
4077840 AA-TGATGAAAATTGGAAATGGAA
1 AATTGATGAAAAATGGAAATGGAA
4077863 AATTGATG
1 AATTGATG
4077871 GAAGGGTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 3 0.11
23 18 0.64
24 7 0.25
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (24 bp):
AATTGATGAAAAATGGAAATGGAA
Found at i:4078450 original size:32 final size:32
Alignment explanation
Indices: 4078406--4078470 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 32
4078396 TTGAGCCTTT
4078406 GCTTAAAGAAGCTTTCAAATTTATTTTCAAAA
1 GCTTAAAGAAGCTTTCAAATTTATTTTCAAAA
*
4078438 GCTT-AAGAAAGCTTTTAAATTTATTTTCAAAA
1 GCTTAAAG-AAGCTTTCAAATTTATTTTCAAAA
4078470 G
1 G
4078471 TTATTGAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 3 0.10
32 28 0.90
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (32 bp):
GCTTAAAGAAGCTTTCAAATTTATTTTCAAAA
Found at i:4078452 original size:78 final size:77
Alignment explanation
Indices: 4078369--4078515 Score: 197
Period size: 78 Copynumber: 1.9 Consensus size: 77
4078359 TGCTTAAATG
* * * *
4078369 AGCTTTCAAATTTATCGTT-AAAAGTCATTGAGCCTTTGCTTAAAGAAGCTTTCAAATTTATTTT
1 AGCTTTCAAATTTAT-GTTCAAAAGTCATTGAGCATTTCCTAAAAG-AGCTTTCAAATTTATTTA
4078433 CAAAAGCTTAAGAA
64 CAAAAGCTTAAGAA
* * * *
4078447 AGCTTTTAAATTTATTTTCAAAAGTTATTGAGCATTTCCTAAAAGAGCTTTTAAATTTATTTACA
1 AGCTTTCAAATTTATGTTCAAAAGTCATTGAGCATTTCCTAAAAGAGCTTTCAAATTTATTTACA
4078512 AAAG
66 AAAG
4078516 TTGTTGAGAC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
77 24 0.40
78 36 0.60
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (77 bp):
AGCTTTCAAATTTATGTTCAAAAGTCATTGAGCATTTCCTAAAAGAGCTTTCAAATTTATTTACA
AAAGCTTAAGAA
Found at i:4078498 original size:45 final size:45
Alignment explanation
Indices: 4078447--4078608 Score: 177
Period size: 45 Copynumber: 3.6 Consensus size: 45
4078437 AGCTTAAGAA
4078447 AGCTTTTAAATTTATTTTCAAAAGTTATTGAGCATTTCCTAAAAG
1 AGCTTTTAAATTTATTTTCAAAAGTTATTGAGCATTTCCTAAAAG
* * ** *
4078492 AGCTTTTAAATTTATTTACAAAAGTTGTTGAG-ACTTTTTTAAATG
1 AGCTTTTAAATTTATTTTCAAAAGTTATTGAGCA-TTTCCTAAAAG
* * *
4078537 AGTTTTTAAATTTATTGTCAAAAGTTATTGAGTC-TTGACCTAAAAG
1 AGCTTTTAAATTTATTTTCAAAAGTTATTGAG-CATT-TCCTAAAAG
* *
4078583 TGCTTCTAAATTTA-TTTCTAAAAGTT
1 AGCTTTTAAATTTATTTTC-AAAAGTT
4078609 GTTTAGATTT
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
44 1 0.01
45 71 0.75
46 23 0.24
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.44
Consensus pattern (45 bp):
AGCTTTTAAATTTATTTTCAAAAGTTATTGAGCATTTCCTAAAAG
Found at i:4078610 original size:91 final size:89
Alignment explanation
Indices: 4078450--4078619 Score: 245
Period size: 91 Copynumber: 1.9 Consensus size: 89
4078440 TTAAGAAAGC
* * *
4078450 TTTTAAATTTATTTTCAAAAGTTATTGAGCATTTCCTAAAAGAGCTTTTAAATTTATTTACAAAA
1 TTTTAAATTTATTGTCAAAAGTTATTGAGCATTACCTAAAAGAGCTTCTAAATTTATTTACAAAA
4078515 GTTGTTGAGACTTTTTTAAATGAGT
66 GTTGTTGAGA-TTTTTTAAATGAGT
*
4078540 TTTTAAATTTATTGTCAAAAGTTATTGAGTC-TTGACCTAAAAGTGCTTCTAAATTTATTT-CTA
1 TTTTAAATTTATTGTCAAAAGTTATTGAG-CATT-ACCTAAAAGAGCTTCTAAATTTATTTAC-A
*
4078603 AAAGTTGTTTAGATTTT
63 AAAGTTGTTGAGATTTT
4078620 AAAAGTTTTG
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
90 35 0.49
91 37 0.51
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.46
Consensus pattern (89 bp):
TTTTAAATTTATTGTCAAAAGTTATTGAGCATTACCTAAAAGAGCTTCTAAATTTATTTACAAAA
GTTGTTGAGATTTTTTAAATGAGT
Found at i:4079492 original size:21 final size:21
Alignment explanation
Indices: 4079466--4079511 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
4079456 TAGATTTGGT
4079466 TTTTATGATAAAAATTAAAGC
1 TTTTATGATAAAAATTAAAGC
* **
4079487 TTTTATGGTAAAGTTTAAAGC
1 TTTTATGATAAAAATTAAAGC
4079508 TTTT
1 TTTT
4079512 GAAAACATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (21 bp):
TTTTATGATAAAAATTAAAGC
Found at i:4079892 original size:16 final size:16
Alignment explanation
Indices: 4079873--4079908 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4079863 ATACCATATT
* *
4079873 TGTTTTCTATTTTACA
1 TGTTCTCTAGTTTACA
4079889 TGTTCTCTAGTTTACA
1 TGTTCTCTAGTTTACA
4079905 TGTT
1 TGTT
4079909 GTGATCACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.11, T:0.58
Consensus pattern (16 bp):
TGTTCTCTAGTTTACA
Found at i:4080027 original size:3 final size:3
Alignment explanation
Indices: 4080021--4080116 Score: 93
Period size: 3 Copynumber: 31.7 Consensus size: 3
4080011 GATGATGATG
* * *
4080021 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA TTA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
4080069 TTA TTA TTA TTA GTA TTA TTA TATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
4080115 AT
1 AT
4080117 TATTATTATT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
3 86 0.98
4 2 0.02
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (3 bp):
ATA
Found at i:4088119 original size:53 final size:53
Alignment explanation
Indices: 4088037--4088141 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 53
4088027 AAAAAGCTAC
* * *
4088037 TAGACAAGTAAGTTATTTGTTAATGAGTTCTTCCTTATCCTTAAGCTTAATAT
1 TAGACAAGTAAGTTATTTGCTAATAAGTTCTTCCTCATCCTTAAGCTTAATAT
* *
4088090 TAGACAAGTAAGTTCTTTGCTAATAAGTTCTTTCTCATCCTTAAGCTTAATA
1 TAGACAAGTAAGTTATTTGCTAATAAGTTCTTCCTCATCCTTAAGCTTAATA
4088142 CTATATTCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (53 bp):
TAGACAAGTAAGTTATTTGCTAATAAGTTCTTCCTCATCCTTAAGCTTAATAT
Found at i:4091447 original size:24 final size:23
Alignment explanation
Indices: 4091403--4091456 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
4091393 TACTTCATTT
*
4091403 TACTAAAAATGATTATGAAAATAA
1 TACTAAAAA-GATTATGAAAAAAA
4091427 TACTAAAAA-ATTATGCAAAAAAA
1 TACTAAAAAGATTATG-AAAAAAA
4091450 -A-TAAAAA
1 TACTAAAAA
4091457 AAACTCCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.21
22 7 0.25
23 6 0.21
24 9 0.32
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (23 bp):
TACTAAAAAGATTATGAAAAAAA
Found at i:4093618 original size:16 final size:16
Alignment explanation
Indices: 4093597--4093631 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
4093587 TCAGAATATA
4093597 TTTGAAACTATAGAAT
1 TTTGAAACTATAGAAT
*
4093613 TTTGAAACTGTAGAAT
1 TTTGAAACTATAGAAT
4093629 TTT
1 TTT
4093632 TTCATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (16 bp):
TTTGAAACTATAGAAT
Found at i:4093804 original size:88 final size:87
Alignment explanation
Indices: 4093598--4093893 Score: 324
Period size: 88 Copynumber: 3.4 Consensus size: 87
4093588 CAGAATATAT
* ** * * *
4093598 TTGAAACTATAGAATTTTGAAACTGTAGAATTTTTTCATAATATATTTTCAACATAAACTATATT
1 TTGAAACTATAAAATTTTGAAA-AATA-AATTTCTTCATAATATATTTTCAACAAAAAATATATT
* * *
4093663 TTT-ATTTTAAAAATATAATACTTA
64 TTTAATCTTAAAAAT-TAGTATTTA
* * * *
4093687 TTGAAATTATAAAATTTTGAACAACAAATTTGTTCATAATATATTTTCAACAAAAAATATATTTT
1 TTGAAACTATAAAATTTTGAAAAATAAATTTCTTCATAATATATTTTCAACAAAAAATATATTTT
*
4093752 TAATCTTAAAAATGTAGTTTTTA
66 TAATCTTAAAAAT-TAGTATTTA
* * * * * *
4093775 TTGAAATTGTAGAATTTTGAAAAATAAATTTCTTCATAATATAGTTTCAACAAAAATTACATTTT
1 TTGAAACTATAAAATTTTGAAAAATAAATTTCTTCATAATATATTTTCAACAAAAAATATATTTT
* *
4093840 TAATCTTAAAAACTTAGTCTTTG
66 TAATCTTAAAAA-TTAGTATTTA
* *
4093863 TTGCAACTATAAAATTTTGAAAAAAAAATTT
1 TTGAAACTATAAAATTTTGAAAAATAAATTT
4093894 TAATTATAAC
Statistics
Matches: 176, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
87 37 0.21
88 119 0.68
89 20 0.11
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (87 bp):
TTGAAACTATAAAATTTTGAAAAATAAATTTCTTCATAATATATTTTCAACAAAAAATATATTTT
TAATCTTAAAAATTAGTATTTA
Found at i:4095798 original size:16 final size:15
Alignment explanation
Indices: 4095765--4095799 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4095755 CTTTTCCTCA
*
4095765 AAAATTTATTTTTTG
1 AAAATTTATTTTTAG
4095780 AAAATTTATTTTTAAG
1 AAAATTTATTTTT-AG
4095796 AAAA
1 AAAA
4095800 ATTGATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (15 bp):
AAAATTTATTTTTAG
Found at i:4095812 original size:59 final size:58
Alignment explanation
Indices: 4095733--4096261 Score: 532
Period size: 59 Copynumber: 8.8 Consensus size: 58
4095723 TGTTTTTGTG
4095733 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTT-TTTTTTGAAAATTTATTTT
* * *
4095792 TAAGAAAAATTGATATTTTCAACTTTT-CTCCAAAAA-TATTTTTTGAAAATTTTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCT-CAAAAATTTTTTTTTGAAAA--TTTATTTT
* *
4095851 CGAA-GAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTGAAAATTTATTTT
1 -TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTT
* *
4095909 TAAGGAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTTGAAACTTTTATTTT
1 TAAGGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATTTTTTTTTGAAA-ATTTATTTT
** * *
4095968 CGAGGAAAATTGATACTTTTAACTTTTCCTAAAAAAAAAAACTTTTTTTTTTGAAAATTT-TTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCT-----CAAAAA--TTTTTTTTTGAAAATTTATTTT
* * *
4096032 TAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAAAAAACTTTTTTTTTTTAAAAATTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTC----AAAAA--TTTTTTTTTGAAAATTTATTTT
* * * *
4096096 TGAGGAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTGGAAACATTGATTTT
1 TAAGGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATTTTTTTTTGAAA-ATTTATTTT
** * * * * *
4096155 CGAGAAAAAATAATACTTTCAACTTTTCCTAAAAAAAAATCTTTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCT---CAAAAATTTTTTTTTGAAAATTTATTTT
* *
4096216 TAAGAAAAATTGATACTTTCAACTTTTCC-CTAAAATATTTTTTTTG
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTTG
4096262 GATTTTATTT
Statistics
Matches: 395, Mismatches: 46, Indels: 59
0.79 0.09 0.12
Matches are distributed among these distances:
57 18 0.05
58 77 0.19
59 126 0.32
60 21 0.05
61 33 0.08
62 16 0.04
63 22 0.06
64 62 0.16
65 8 0.02
66 12 0.03
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.46
Consensus pattern (58 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTT
Found at i:4096284 original size:5 final size:5
Alignment explanation
Indices: 4096276--4096357 Score: 71
Period size: 5 Copynumber: 15.8 Consensus size: 5
4096266 TTATTTAAAG
*
4096276 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAGT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAA-T
*
4096326 AAAACA AAAAT AAAAAT AAAAT AAAGAT AAAA
1 AAAA-T AAAAT -AAAAT AAAAT AAA-AT AAAA
4096358 GAGCATTAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.05
4 4 0.06
5 32 0.50
6 21 0.33
7 4 0.06
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:4096309 original size:17 final size:16
Alignment explanation
Indices: 4096306--4096358 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
4096296 AATAAAAGTG
4096306 AAAA-TAAAA-AAAAT
1 AAAAGTAAAACAAAAT
4096320 AAAAGTAAAACAAAAAT
1 AAAAGTAAAAC-AAAAT
* *
4096337 AAAAATAAAATAAAGAT
1 AAAAGTAAAACAAA-AT
4096354 AAAAG
1 AAAAG
4096359 AGCATTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
14 4 0.12
15 5 0.16
16 3 0.09
17 20 0.62
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (16 bp):
AAAAGTAAAACAAAAT
Found at i:4096320 original size:21 final size:21
Alignment explanation
Indices: 4096286--4096357 Score: 83
Period size: 21 Copynumber: 3.3 Consensus size: 21
4096276 AAAATAAAAT
*
4096286 AATAAAACAAAATAAAAGTGAA
1 AATAAAA-AAAATAAAAGTAAA
4096308 AATAAAAAAAATAAAAGTAAA
1 AATAAAAAAAATAAAAGTAAA
*
4096329 ACAAAAATAAAAATAAAA-TAAA
1 A-ATAAA-AAAAATAAAAGTAAA
*
4096351 GATAAAA
1 AATAAAA
4096358 GAGCATTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.02
21 18 0.41
22 15 0.34
23 10 0.23
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.14
Consensus pattern (21 bp):
AATAAAAAAAATAAAAGTAAA
Found at i:4096323 original size:6 final size:6
Alignment explanation
Indices: 4096276--4096357 Score: 52
Period size: 6 Copynumber: 14.5 Consensus size: 6
4096266 TTATTTAAAG
* *
4096276 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTG AAAAT- -AAA-A AAAATA
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA AAAATA
* * *
4096321 AAAGT- AAAACA AAAATA AAAAT- AAAATA AAGATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
4096358 GAGCATTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
4 3 0.05
5 16 0.27
6 35 0.59
7 5 0.08
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:4096410 original size:16 final size:15
Alignment explanation
Indices: 4096383--4096415 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
4096373 CTAATTTAAT
4096383 AATAAAAAACAAATA
1 AATAAAAAACAAATA
4096398 AATAAATAAACAAATA
1 AATAAA-AAACAAATA
4096414 AA
1 AA
4096416 AATAAACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (15 bp):
AATAAAAAACAAATA
Found at i:4097296 original size:18 final size:19
Alignment explanation
Indices: 4097273--4097318 Score: 76
Period size: 18 Copynumber: 2.4 Consensus size: 19
4097263 AAAAAGAGAA
4097273 AAAAAAAATCAGATAAAC-
1 AAAAAAAATCAGATAAACG
4097291 AAAAAAAATCAGATAAACG
1 AAAAAAAATCAGATAAACG
4097310 AATAAAAAA
1 AA-AAAAAA
4097319 AATAGATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 18 0.69
19 2 0.08
20 6 0.23
ACGTcount: A:0.74, C:0.09, G:0.07, T:0.11
Consensus pattern (19 bp):
AAAAAAAATCAGATAAACG
Found at i:4097334 original size:17 final size:17
Alignment explanation
Indices: 4097312--4097344 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4097302 GATAAACGAA
4097312 TAAAAAA-AATAGATAAT
1 TAAAAAATAATA-ATAAT
4097329 TAAAAAATAATAATAA
1 TAAAAAATAATAATAA
4097345 GATAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAAAATAATAATAAT
Found at i:4097348 original size:22 final size:22
Alignment explanation
Indices: 4097322--4097393 Score: 85
Period size: 21 Copynumber: 3.4 Consensus size: 22
4097312 TAAAAAAAAT
*
4097322 AGATAATTAAAAAATAATAATA
1 AGATAAATAAAAAATAATAATA
* * *
4097344 AGATAAATCAAAAAT-ATTACA
1 AGATAAATAAAAAATAATAATA
*
4097365 AGATAAATAAAAAAAAATAATA
1 AGATAAATAAAAAATAATAATA
4097387 A-ATAAAT
1 AGATAAAT
4097394 TATACTATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 23 0.56
22 18 0.44
ACGTcount: A:0.69, C:0.03, G:0.04, T:0.24
Consensus pattern (22 bp):
AGATAAATAAAAAATAATAATA
Found at i:4097350 original size:18 final size:17
Alignment explanation
Indices: 4097273--4097350 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 17
4097263 AAAAAGAGAA
*
4097273 AAAAAAAATCAGATAAAC
1 AAAAAAAAT-AGATAAAT
4097291 AAAAAAAATCAGATAAACGAAT
1 AAAAAAAAT-AGAT--A--AAT
*
4097313 AAAAAAAATAGATAATT
1 AAAAAAAATAGATAAAT
4097330 AAAAAATAATA-ATAAGAT
1 AAAAAA-AATAGATAA-AT
4097348 AAA
1 AAA
4097351 TCAAAAATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
17 12 0.24
18 22 0.43
19 1 0.02
20 1 0.02
21 4 0.08
22 11 0.22
ACGTcount: A:0.72, C:0.05, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAAAAAATAGATAAAT
Found at i:4097390 original size:4 final size:4
Alignment explanation
Indices: 4097367--4097525 Score: 55
Period size: 4 Copynumber: 40.0 Consensus size: 4
4097357 ATATTACAAG
* *
4097367 ATAA ATAA A-AA A-AA AT-A ATAA ATAA ATTATA CTATA AT-A ATAA ATAT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A-TA-A ATA-A ATAA ATAA ATAA
* * * * * * *
4097414 ATAA CTAG ATAA ATAAA ATAC ATAT ATAA AT-A TTAA CAGAA AAAA ATAA
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA -ATAA ATAA ATAA
* * * * * *
4097463 AT-A ATAA AGAT ATAC ATAT ATTA ATAC ATAGTA AT-A ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA--A ATAA ATAA ATAA ATAA
*
4097511 AT-A ATAA ATAC ATAA
1 ATAA ATAA ATAA ATAA
4097526 GATACAAAGG
Statistics
Matches: 114, Mismatches: 28, Indels: 26
0.68 0.17 0.15
Matches are distributed among these distances:
3 23 0.20
4 75 0.66
5 13 0.11
6 3 0.03
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:4097391 original size:21 final size:21
Alignment explanation
Indices: 4097313--4097393 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
4097303 ATAAACGAAT
* *
4097313 AAAAAA-AATAGATAATTAAA
1 AAAAAATAATAAATAAATAAA
* *
4097333 AAATAATAATAAGATAAATCAA
1 AAAAAATAATAA-ATAAATAAA
* * *
4097355 AAATATTACA-AGATAAATAAA
1 AAAAAATA-ATAAATAAATAAA
4097376 AAAAAATAATAAATAAAT
1 AAAAAATAATAAATAAAT
4097394 TATACTATAA
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
20 6 0.13
21 25 0.53
22 15 0.32
23 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAAAATAATAAATAAATAAA
Found at i:4097405 original size:19 final size:21
Alignment explanation
Indices: 4097381--4097430 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
4097371 ATAAAAAAAA
4097381 ATAATAAATAAAT-TAT-ACT
1 ATAATAAATAAATATATAACT
4097400 ATAAT-AATAAATATATAACT
1 ATAATAAATAAATATATAACT
*
4097420 A-GATAAATAAA
1 ATAATAAATAAA
4097431 ATACATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 7 0.26
19 10 0.37
20 10 0.37
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (21 bp):
ATAATAAATAAATATATAACT
Done.