Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 23 of 106
Found at i:4097560 original size:6 final size:6
Alignment explanation
Indices: 4097541--4097592 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
4097531 AAAGGAAGAA
*
4097541 AAAAAT ATAAAAT AAAAAT AAAAAT AAAAAT -AATAT -AAAAT ACAAAAT
1 AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT
4097589 AAAA
1 AAAA
4097593 GCCAAATTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 8 0.20
6 21 0.51
7 12 0.29
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:4097578 original size:23 final size:24
Alignment explanation
Indices: 4097542--4097592 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
4097532 AAGGAAGAAA
4097542 AAAATATAAAATAAAAATA-AAAAT
1 AAAATATAAAAT-AAAATACAAAAT
*
4097566 AAAA-ATAATATAAAATACAAAAT
1 AAAATATAAAATAAAATACAAAAT
4097589 AAAA
1 AAAA
4097593 GCCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (24 bp):
AAAATATAAAATAAAATACAAAAT
Found at i:4097578 original size:28 final size:28
Alignment explanation
Indices: 4097539--4097592 Score: 92
Period size: 28 Copynumber: 1.9 Consensus size: 28
4097529 ACAAAGGAAG
4097539 AAAAAAATATAAAATA-AAAATAAAAAT
1 AAAAAAATATAAAATACAAAATAAAAAT
4097566 AAAAATAATATAAAATACAAAATAAAA
1 AAAAA-AATATAAAATACAAAATAAAA
4097593 GCCAAATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 5 0.20
28 11 0.44
29 9 0.36
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.19
Consensus pattern (28 bp):
AAAAAAATATAAAATACAAAATAAAAAT
Found at i:4097865 original size:41 final size:41
Alignment explanation
Indices: 4097793--4098223 Score: 522
Period size: 41 Copynumber: 10.6 Consensus size: 41
4097783 TAGAGGGTCA
* * * * * *
4097793 ACGACTTTGAGAAACATAAATAGCTCTTCTAATCAGAGGCTCA
1 ACGACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCACC
* *
4097836 ATGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* *
4097877 ACGACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* * *
4097918 ATGACTTTTGGAAAGTAAATTACTCCTCTAAACAGAGGCACC
1 ACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
4097960 ACGACTTTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* *
4098001 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* * * *
4098042 ACGACTTTTGGAAAGCAAAATGCTCCTCTAAACGGAGGCACC
1 ACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
* * * * *
4098084 ACGACTTTGGAAAGTAAATTACTCTTCTAAACAGAAGCATC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
*
4098125 ACGACTTTGAAAAGTAAATTGCTCCTTTAAACAGAGGCACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
4098166 ACGACTTT-----G--AA--GCTCCTCTAAACAGAGGCACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
4098198 ACGACTTTGAAAAGTAAATTGCTCCT
1 ACGACTTTGAAAAGTAAATTGCTCCT
4098224 TGACAATCAT
Statistics
Matches: 338, Mismatches: 37, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
32 28 0.08
34 2 0.01
36 1 0.00
37 1 0.00
39 2 0.01
40 5 0.01
41 210 0.62
42 80 0.24
43 9 0.03
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (41 bp):
ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
Found at i:4097957 original size:83 final size:82
Alignment explanation
Indices: 4097793--4098223 Score: 529
Period size: 83 Copynumber: 5.3 Consensus size: 82
4097783 TAGAGGGTCA
* * * * * * * * * *
4097793 ACGACTTTGAGAAACATAAATAGCTCTTCTAATCAGAGGCTCAATGACTTTGAAAAATAAATTGC
1 ACGACTTTG-GAAA-GTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTAC
4097858 TCCTCTAAACAGAGGCACC
64 TCCTCTAAACAGAGGCACC
* *
4097877 ACGACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACCATGACTTTTGGAAAGTAAATTACT
1 ACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTACT
4097942 CCTCTAAACAGAGGCACC
65 CCTCTAAACAGAGGCACC
* * * *
4097960 ACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTC
1 ACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTACTC
*
4098025 CTCTAAACAGAGGTACC
66 CTCTAAACAGAGGCACC
* * *
4098042 ACGACTTTTGGAAAGCAAAATGCTCCTCTAAACGGAGGCACCACGACTTTGGAAAGTAAATTACT
1 ACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTACT
* * *
4098107 CTTCTAAACAGAAGCATC
65 CCTCTAAACAGAGGCACC
* *
4098125 ACGACTTTGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCACGACTTT-G-AAG-------CTC
1 ACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTACTC
4098181 CTCTAAACAGAGGCACC
66 CTCTAAACAGAGGCACC
*
4098198 ACGACTTTGAAAAGTAAATTGCTCCT
1 ACGACTTTGGAAAGTAAATTGCTCCT
4098224 TGACAATCAT
Statistics
Matches: 309, Mismatches: 36, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
73 43 0.14
80 3 0.01
81 1 0.00
82 102 0.33
83 151 0.49
84 9 0.03
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (82 bp):
ACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTACTC
CTCTAAACAGAGGCACC
Found at i:4097993 original size:124 final size:121
Alignment explanation
Indices: 4097820--4098223 Score: 536
Period size: 124 Copynumber: 3.3 Consensus size: 121
4097810 AAATAGCTCT
* * * * *
4097820 TCTAATCAGAGGCTCAATGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
1 TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
* * *
4097885 GGAAAGTAAATTGCTCCTCTAAATAGAGGCACCATGACTTTTGGAAAGTAAATTACTCC
66 GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAG-AAA-T-CTCC
4097944 TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
1 TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
* *
4098009 GAAAAATAAATTGCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAGCAAAATGCTCC
66 GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAG--AAAT-CTCC
* * * * * *
4098068 TCTAAACGGAGGCACCACGACTTTGGAAAGTAAATTACTCTTCTAAACAGAAGCATCACGACTTT
1 TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
*
4098133 GAAAAGTAAATTGCTCCTTTAAACAGAGGCACCACGAC-TTT-G-AAG----CTCC
66 GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGAAATCTCC
4098182 TCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCT
1 TCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATTGCTCCT
4098224 TGACAATCAT
Statistics
Matches: 253, Mismatches: 25, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
113 4 0.02
114 37 0.15
121 3 0.01
122 1 0.00
123 3 0.01
124 202 0.80
125 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (121 bp):
TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGAAATCTCC
Found at i:4098188 original size:32 final size:32
Alignment explanation
Indices: 4098145--4098208 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
4098135 AAAGTAAATT
*
4098145 GCTCCTTTAAACAGAGGCACCACGACTTTGAA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAA
4098177 GCTCCTCTAAACAGAGGCACCACGACTTTGAA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAA
4098209 AAGTAAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (32 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAA
Found at i:4105040 original size:28 final size:26
Alignment explanation
Indices: 4104988--4105040 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4104978 TTTTGCATTA
* *
4104988 AGAAAAAAGACATTTGTATTTACATC
1 AGAAAAAAGACATTTATATTCACATC
4105014 AGAAAAAAGACATTTACATATTCACAT
1 AGAAAAAAGACATTT--ATATTCACAT
4105041 AGTGCATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
28 8 0.35
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.28
Consensus pattern (26 bp):
AGAAAAAAGACATTTATATTCACATC
Found at i:4105661 original size:40 final size:40
Alignment explanation
Indices: 4105408--4105668 Score: 204
Period size: 40 Copynumber: 6.5 Consensus size: 40
4105398 AAACCTCTAA
* * * ** * *
4105408 GCAAAGTTTTAAATTTTTGAATGATGTTTAAGACATTAGG
1 GCAAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGG
* * * * *
4105448 GTAAAATTTTTAAATTTTTGAATGCTCTCCAAGACTTTTGA
1 GCAAAA-TTTTAAAATTTTGAATGATCTCCAAGACCTTTGG
* * * * * **
4105489 GTAGAATTTTAAATTTTTGAGTGATCTCCAAGACCTCTAA
1 GCAAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGG
*
4105529 GCAAAATTTTAAAATTTTGAATTATCTCCAAGACCTTCT-G
1 GCAAAATTTTAAAATTTTGAATGATCTCCAAGACCTT-TGG
* * **
4105569 GCAAAATTTTAAAATTTTGAACT-ATTTTCAAGACCTTCAG
1 GCAAAATTTTAAAATTTTGAA-TGATCTCCAAGACCTTTGG
* **
4105609 GCAAAATCTTAAAATTTTGAATGATCTTTAAGACCTTTGG
1 GCAAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGG
* * *
4105649 GTATAACTTT-AAATTTTGAA
1 GCAAAATTTTAAAATTTTGAA
4105669 CGATGTTCAA
Statistics
Matches: 182, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
39 11 0.06
40 137 0.75
41 34 0.19
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.39
Consensus pattern (40 bp):
GCAAAATTTTAAAATTTTGAATGATCTCCAAGACCTTTGG
Found at i:4105904 original size:18 final size:20
Alignment explanation
Indices: 4105873--4105909 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
4105863 AACAGCCCAA
*
4105873 AAAAAAGGAGAAAA-ATTTC
1 AAAAAAGGAAAAAATATTTC
4105892 AAAAAA-GAAAAAATATTT
1 AAAAAAGGAAAAAATATTT
4105910 ATTTCAAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.68, C:0.03, G:0.11, T:0.19
Consensus pattern (20 bp):
AAAAAAGGAAAAAATATTTC
Found at i:4106202 original size:35 final size:35
Alignment explanation
Indices: 4106163--4106247 Score: 118
Period size: 35 Copynumber: 2.4 Consensus size: 35
4106153 ATTTAAGCCC
*
4106163 AATTTAGCT-GCAACCCACTGAGTAGAATTAAACCT
1 AATTTAGCTGGC-ACCCACTGAGGAGAATTAAACCT
* *
4106198 AATTTAGCTGGCACCCACTGAGGAGAATTGAACTT
1 AATTTAGCTGGCACCCACTGAGGAGAATTAAACCT
*
4106233 AATTTAGTTGGCACC
1 AATTTAGCTGGCACC
4106248 AATTTGAGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 43 0.96
36 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (35 bp):
AATTTAGCTGGCACCCACTGAGGAGAATTAAACCT
Found at i:4106396 original size:25 final size:25
Alignment explanation
Indices: 4106353--4106401 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
4106343 ACTAGCATGC
*
4106353 AAAAATACAATGGAAAAAAATGAAA
1 AAAAATACAATGAAAAAAAATGAAA
*
4106378 AAAAATA-AATGAAACAAAACTGAA
1 AAAAATACAATGAAA-AAAAATGAA
4106402 TGGGTGAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.12
Consensus pattern (25 bp):
AAAAATACAATGAAAAAAAATGAAA
Found at i:4106588 original size:24 final size:23
Alignment explanation
Indices: 4106535--4106589 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
4106525 AGGAACTGAT
4106535 AATTGATGAATAAATGAAATGAA
1 AATTGATGAATAAATGAAATGAA
* *
4106558 AAATGATGAA-AATTGGAAATGGAA
1 AATTGATGAATAAAT-GAAAT-GAA
4106582 AATTGATG
1 AATTGATG
4106590 GAAGGGTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.11
23 14 0.52
24 10 0.37
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (23 bp):
AATTGATGAATAAATGAAATGAA
Found at i:4107164 original size:32 final size:32
Alignment explanation
Indices: 4107128--4107190 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
4107118 TGAGCCTTTG
4107128 CTTAAAGAAGCTTTCAAATTTATTTTCAAAAA
1 CTTAAAGAAGCTTTCAAATTTATTTTCAAAAA
* *
4107160 CTTAAGGAAGCTTTTAAATTTATTTTCAAAA
1 CTTAAAGAAGCTTTCAAATTTATTTTCAAAA
4107191 GTTGTTGAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (32 bp):
CTTAAAGAAGCTTTCAAATTTATTTTCAAAAA
Found at i:4107213 original size:78 final size:77
Alignment explanation
Indices: 4107090--4107235 Score: 186
Period size: 78 Copynumber: 1.9 Consensus size: 77
4107080 TGCTTAAATG
* * * *
4107090 AGCTTTCAAATTTATCGTCAAAAGTCATTGAGCCTTTGCTTAAAGAAGC-TTTCAAATTTATTTT
1 AGCTTTCAAATTTATCGTCAAAAGTCATTGAACCTTTCCTAAAAG-AGCTTTTC-AATTTATTTA
4107154 CAAAAACTTAAGGA
64 CAAAAACTTAAGGA
* ** **
4107168 AGCTTTTAAATTTATTTTCAAAAGTTGTTGAACCTTTCCTAAAAGAGCTTTTCAATTTATTTACA
1 AGCTTTCAAATTTATCGTCAAAAGTCATTGAACCTTTCCTAAAAGAGCTTTTCAATTTATTTACA
4107233 AAA
66 AAA
4107236 GTTGTTGAGT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
77 17 0.29
78 41 0.71
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (77 bp):
AGCTTTCAAATTTATCGTCAAAAGTCATTGAACCTTTCCTAAAAGAGCTTTTCAATTTATTTACA
AAAACTTAAGGA
Found at i:4107225 original size:45 final size:45
Alignment explanation
Indices: 4107168--4107332 Score: 213
Period size: 45 Copynumber: 3.6 Consensus size: 45
4107158 AACTTAAGGA
**
4107168 AGCTTTTAAATTTATTTTCAAAAGTTGTTGAACCTTTCCTAAAAG
1 AGCTTTTAAATTTATTTTCAAAAGTTGTTGAGTCTTTCCTAAAAG
* * ** *
4107213 AGCTTTTCAATTTATTTACAAAAGTTGTTGAGTCTTTTTTAAATG
1 AGCTTTTAAATTTATTTTCAAAAGTTGTTGAGTCTTTCCTAAAAG
* * * *
4107258 AGTTTTTAAATTTATTGTCAAAAGTTATTGAGTCTTGACCTAAAAG
1 AGCTTTTAAATTTATTTTCAAAAGTTGTTGAGTCTT-TCCTAAAAG
*
4107304 AGCTTTTAAATTTATTTTTAAAAGTTGTT
1 AGCTTTTAAATTTATTTTCAAAAGTTGTT
4107333 TAGATTTCAA
Statistics
Matches: 99, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
45 69 0.70
46 30 0.30
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (45 bp):
AGCTTTTAAATTTATTTTCAAAAGTTGTTGAGTCTTTCCTAAAAG
Found at i:4107720 original size:20 final size:21
Alignment explanation
Indices: 4107684--4107724 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
4107674 CAAAAAAAAA
4107684 AAAAAAGTAGAAAAAAGGAAG
1 AAAAAAGTAGAAAAAAGGAAG
4107705 AAAAAAG-A-AAAGAAAGGAAG
1 AAAAAAGTAGAAA-AAAGGAAG
4107725 GAGTTTTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 9 0.47
21 7 0.37
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (21 bp):
AAAAAAGTAGAAAAAAGGAAG
Found at i:4108230 original size:21 final size:21
Alignment explanation
Indices: 4108204--4108249 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
4108194 TAGGTTTGGT
4108204 TTTTATGATAAAAATTAAAGC
1 TTTTATGATAAAAATTAAAGC
* **
4108225 TTTTATGGTAAAGTTTAAAGC
1 TTTTATGATAAAAATTAAAGC
4108246 TTTT
1 TTTT
4108250 GAAAACATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (21 bp):
TTTTATGATAAAAATTAAAGC
Found at i:4108627 original size:16 final size:16
Alignment explanation
Indices: 4108608--4108643 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4108598 ATACCATATT
* *
4108608 TGTTTTCTATTTTACA
1 TGTTCTCTAGTTTACA
4108624 TGTTCTCTAGTTTACA
1 TGTTCTCTAGTTTACA
4108640 TGTT
1 TGTT
4108644 GTGAATCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.11, T:0.58
Consensus pattern (16 bp):
TGTTCTCTAGTTTACA
Found at i:4108764 original size:3 final size:3
Alignment explanation
Indices: 4108758--4108804 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
4108748 GATGATGATG
4108758 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
4108805 TATTATTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4108809 original size:3 final size:3
Alignment explanation
Indices: 4108803--4108837 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4108793 AATAATAATA
4108803 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
4108838 AATGCACATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4110540 original size:13 final size:13
Alignment explanation
Indices: 4110522--4110547 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4110512 GCACATAGTA
4110522 AATCTACTTTAGG
1 AATCTACTTTAGG
4110535 AATCTACTTTAGG
1 AATCTACTTTAGG
4110548 TTTTATTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
AATCTACTTTAGG
Found at i:4115046 original size:15 final size:16
Alignment explanation
Indices: 4115026--4115055 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4115016 TTTCTTCCTT
4115026 TTTTTCATT-TTTTTA
1 TTTTTCATTCTTTTTA
4115041 TTTTTCATTCTTTTT
1 TTTTTCATTCTTTTT
4115056 CCAAGCTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCATTCTTTTTA
Found at i:4116813 original size:53 final size:53
Alignment explanation
Indices: 4116728--4116840 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 53
4116718 ATGAAAAAGC
* *
4116728 TACTAGACAAGTAAGTTATTTGTTAATGAGTT-CTTCCTCATCCTTAAGCTTAA
1 TACTAGACAAGTAAGTTATTTGCTAATAAGTTCCTT-CTCATCCTTAAGCTTAA
* * * *
4116781 TATTAGACAAGTAAGTTCTTTGCTAATAAGTTCCTTCTCGTTCTTAAGCTTAA
1 TACTAGACAAGTAAGTTATTTGCTAATAAGTTCCTTCTCATCCTTAAGCTTAA
4116834 TACTAGA
1 TACTAGA
4116841 TTCAAGAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 49 0.94
54 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (53 bp):
TACTAGACAAGTAAGTTATTTGCTAATAAGTTCCTTCTCATCCTTAAGCTTAA
Found at i:4122367 original size:16 final size:16
Alignment explanation
Indices: 4122346--4122380 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
4122336 TCAGAATATA
4122346 TTTGAAACTATAGAAT
1 TTTGAAACTATAGAAT
*
4122362 TTTGAAACTGTAGAAT
1 TTTGAAACTATAGAAT
4122378 TTT
1 TTT
4122381 TTCATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (16 bp):
TTTGAAACTATAGAAT
Found at i:4122616 original size:88 final size:88
Alignment explanation
Indices: 4122347--4122617 Score: 330
Period size: 88 Copynumber: 3.1 Consensus size: 88
4122337 CAGAATATAT
* ** * * *
4122347 TTGAAACTATAGAATTTTGAAACTGTAGAATTTTTTCATAATATATTTTCAACATAAACTATATT
1 TTGAAATTATAGAATTTTGAAA-AATA-AATTTCTTCATAATATATTTTCAACAAAAAATATATT
* *
4122412 TTT-ATTTTAAAAATATAATAC-TTA
64 TTTAATCTTAAAAATATAGT-CTTTA
* * * *
4122436 TTGAAATTATAAAATTTTGAACAACAAATTTGTTCATAATATATTTTCAACAAAAAATATATTTT
1 TTGAAATTATAGAATTTTGAAAAATAAATTTCTTCATAATATATTTTCAACAAAAAATATATTTT
* *
4122501 TAATCTTAAAAATGTAGTTTTTA
66 TAATCTTAAAAATATAGTCTTTA
* * *
4122524 TTGAAATTATAGAATTTTGAAAAATAAATTTCTTCATAATATAGTTTCAACAAAAATTACATTTT
1 TTGAAATTATAGAATTTTGAAAAATAAATTTCTTCATAATATATTTTCAACAAAAAATATATTTT
* *
4122589 TAATCTTAAAAACATAGTCTTTG
66 TAATCTTAAAAATATAGTCTTTA
4122612 TTGAAA
1 TTGAAA
4122618 CAAAAATTAC
Statistics
Matches: 156, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
87 37 0.24
88 100 0.64
89 19 0.12
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (88 bp):
TTGAAATTATAGAATTTTGAAAAATAAATTTCTTCATAATATATTTTCAACAAAAAATATATTTT
TAATCTTAAAAATATAGTCTTTA
Found at i:4122622 original size:44 final size:44
Alignment explanation
Indices: 4122572--4122671 Score: 173
Period size: 44 Copynumber: 2.2 Consensus size: 44
4122562 ATATAGTTTC
4122572 AACAAAAATTACATTTTTAATCTTAAAAACATAGTCTTTGTTGA
1 AACAAAAATTACATTTTTAATCTTAAAAACATAGTCTTTGTTGA
*
4122616 AACAAAAATTACATTTTTAATCTTAAAAACTTAGTCTTTGTTGA
1 AACAAAAATTACATTTTTAATCTTAAAAACATAGTCTTTGTTGA
4122660 AACTATAAAATT
1 AAC-A-AAAATT
4122672 TTGAAAAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
44 46 0.87
45 1 0.02
46 6 0.11
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (44 bp):
AACAAAAATTACATTTTTAATCTTAAAAACATAGTCTTTGTTGA
Found at i:4124605 original size:59 final size:58
Alignment explanation
Indices: 4124526--4125054 Score: 543
Period size: 60 Copynumber: 8.8 Consensus size: 58
4124516 TGTTTTTGTG
*
4124526 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTT-TTTTTTGAAAATTTATTTT
* *
4124585 TAAGGAAAATTGATATTTTCAACTTTT-CTCCAAAAA-TATTTTTTGAAAATTTTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCT-CAAAAATTTTTTTTTGAAAA--TTTATTTT
* *
4124644 CGAAGGAAAATTGATACTTTCAAAC-TTTCCTCAAAAA-CTTTTTTTGAAAATTTATTTT
1 -TAAGGAAAATTGATACTTTC-AACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTT
*
4124702 TAAGGAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTTTGAAACTTTTATTTT
1 TAAGGAAAATTGATACTTTCAAC-TTTTCCTCAAAAAT-TTTTTTTTGAAA-ATTTATTTT
** * * *
4124762 CGAGGAAAATTGATACTTTTAACTTTTCCTAAAAAAAAAACTTTTTTTTTTGAAAATTTTTTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCT----CAAAAA--TTTTTTTTTGAAAATTTATTTT
*
4124826 TAAGGAAAATTGATACTTTCAACTTTT-CTCAAAAAAAAACTTTTTTTTTTTAAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTC----AAAAA---TTTTTTTTTGAAAATTTATTTT
* * * *
4124890 TGAGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGGAAACATTGATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAA-ATTTATTTT
** * * * * *
4124948 CGAGAAAAAATAATACTTTCAACTTTTCCTAAAAAAAATCTTTTTTTGAAAATTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCT--CAAAAATTTTTTTTTGAAAATTTATTTT
*
4125008 TAAGAAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTG
1 TAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-TTTTTTTTG
4125055 GATTTTATTT
Statistics
Matches: 398, Mismatches: 42, Indels: 60
0.80 0.08 0.12
Matches are distributed among these distances:
56 3 0.01
57 46 0.12
58 55 0.14
59 64 0.16
60 104 0.26
61 21 0.05
63 7 0.02
64 84 0.21
65 13 0.03
66 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (58 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTT
Found at i:4124711 original size:117 final size:117
Alignment explanation
Indices: 4124531--4125051 Score: 547
Period size: 117 Copynumber: 4.3 Consensus size: 117
4124521 TTGTGTAAGA
*
4124531 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTGAAAATTTATTTTTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CTATTTTTTGAAAATTTATTTTTAAGGAAAATT
* *
4124596 GATATTTTCAACTTTTCT-CCAAAAATATTTTTTGAAAATTTTTATTTTCGAAGG
65 GATACTTTCAACTTTTCTACAAAAAATATTTTTTGAAAA-TTTTATTTTCG-AGG
4124650 AAAATTGATACTTTCAAAC-TTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTTAAGGAAAATT
1 AAAATTGATACTTTC-AACTTTTCCTCAAAAACTATTTTTTGAAAATTTATTTTTAAGGAAAATT
* * *
4124713 GATACTTTCAACTTTT-TCCCAAAAATATTTTTTTTGAAACTTTTATTTTCGAGG
65 GATACTTTCAACTTTTCT-ACAAAAA-ATATTTTTTGAAAATTTTATTTTCGAGG
* * * *
4124767 AAAATTGATACTTTTAACTTTTCCTAAAAAAAAAACTTTTTTTTTTGAAAATTTTTTTTTAAGGA
1 AAAATTGATACTTTCAACTTTTCCT----CAAAAAC--TATTTTTTGAAAATTTATTTTTAAGGA
* * * * *
4124832 AAATTGATACTTTCAACTTTTCTCAAAAAAAAACTTTTTTTTTTTAAAAATTTATTTTTGAGG
60 AAATTGATACTTTCAACTTTTCT--ACAAAAAA---TATTTTTTGAAAATTTTATTTTCGAGG
* ** * *
4124895 AAAATTGATACTTTCAACTTTTCC-CAAAAA-TATTTTTTGGAAACATTGATTTTCGAGAAAAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACTATTTTTT-GAAA-ATTTATTTTTAAGGAAAAT
* * * ** *
4124958 TAATACTTTCAACTTTTCCTAAAAAAAATCTTTTTTTGAAAA-TTTATTTTTAAGA
64 TGATACTTTCAACTTTT-CTACAAAAAAT-ATTTTTTGAAAATTTTATTTTCGAGG
4125013 AAAATTGATACTTTCAACTTTTCC-CTAAAAA-TATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAACTATTTTTT
4125052 TTGGATTTTA
Statistics
Matches: 352, Mismatches: 28, Indels: 44
0.83 0.07 0.10
Matches are distributed among these distances:
116 4 0.01
117 68 0.19
118 54 0.15
119 63 0.18
120 10 0.03
121 18 0.05
122 29 0.08
123 8 0.02
124 45 0.13
125 2 0.01
126 5 0.01
128 46 0.13
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAACTATTTTTTGAAAATTTATTTTTAAGGAAAATTG
ATACTTTCAACTTTTCTACAAAAAATATTTTTTGAAAATTTTATTTTCGAGG
Found at i:4125077 original size:5 final size:5
Alignment explanation
Indices: 4125069--4125149 Score: 71
Period size: 5 Copynumber: 15.8 Consensus size: 5
4125059 TTATTTAAAG
*
4125069 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAGT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAA-T
4125119 AAACA- AAAAT AAAAAT AAAAT AAAGAT AAAA
1 AAA-AT AAAAT -AAAAT AAAAT AAA-AT AAAA
4125150 GAGCATTAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
3 3 0.05
4 5 0.08
5 35 0.55
6 16 0.25
7 5 0.08
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:4125102 original size:25 final size:23
Alignment explanation
Indices: 4125069--4125142 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 23
4125059 TTATTTAAAG
*
4125069 AAAA-TAAAATAATAAAACAAAAT
1 AAAAGTAAAAAAATAAAA-AAAAT
*
4125092 AAAAGT--GAAAATAAAAAAAAT
1 AAAAGTAAAAAAATAAAAAAAAT
* *
4125113 AAAAGTAAACAAA-AATAAAAAT
1 AAAAGTAAAAAAATAAAAAAAAT
4125135 AAAA-TAAA
1 AAAAGTAAA
4125143 GATAAAAGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 15 0.35
22 20 0.47
23 7 0.16
24 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (23 bp):
AAAAGTAAAAAAATAAAAAAAAT
Found at i:4125126 original size:16 final size:15
Alignment explanation
Indices: 4125099--4125150 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
4125089 AATAAAAGTG
4125099 AAAA-TAAAAAAAAT
1 AAAAGTAAAAAAAAT
4125113 AAAAGTAAACAAAAAT
1 AAAAGTAAA-AAAAAT
*
4125129 AAAAATAAAATAAAGAT
1 AAAAGTAAAA-AAA-AT
4125146 AAAAG
1 AAAAG
4125151 AGCATTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 4 0.12
15 5 0.16
16 17 0.53
17 6 0.19
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAAGTAAAAAAAAT
Found at i:4125202 original size:16 final size:15
Alignment explanation
Indices: 4125175--4125214 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
4125165 CTAATTTAAT
4125175 AATAAAAAACAAATA
1 AATAAAAAACAAATA
4125190 AATAAATAAACAAATA
1 AATAAA-AAACAAATA
4125206 AA-AAAAAAC
1 AATAAAAAAC
4125215 TTGGAGCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.17
15 9 0.38
16 11 0.46
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.12
Consensus pattern (15 bp):
AATAAAAAACAAATA
Found at i:4126114 original size:17 final size:17
Alignment explanation
Indices: 4126092--4126124 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4126082 GATAAACGAA
4126092 TAAAAAA-AATAGATAAT
1 TAAAAAATAATA-ATAAT
4126109 TAAAAAATAATAATAA
1 TAAAAAATAATAATAA
4126125 GATAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAAAATAATAATAAT
Found at i:4126174 original size:11 final size:11
Alignment explanation
Indices: 4126090--4126302 Score: 71
Period size: 11 Copynumber: 19.8 Consensus size: 11
4126080 CAGATAAACG
4126090 AATAAA-AA-A
1 AATAAATAATA
*
4126099 AATAGATAATTA
1 AATAAATAA-TA
4126111 AA-AAATAAT-
1 AATAAATAATA
4126120 AATAAGATAAATA
1 AATAA-AT-AATA
* *
4126133 AAAAAATATTA
1 AATAAATAATA
* *
4126144 CA-AGATAA-A
1 AATAAATAATA
4126153 AA-AAATAATA
1 AATAAATAATA
*
4126163 AATAAATTAT-
1 AATAAATAATA
4126173 AATATAATAATA
1 AATA-AATAATA
*
4126185 AATATATAACTA
1 AATAAATAA-TA
*
4126197 GATAAAT-A-A
1 AATAAATAATA
*
4126206 AATACAT-AT-
1 AATAAATAATA
*
4126215 -ATAAATATTA
1 AATAAATAATA
*
4126225 ACAGAAA-AA-A
1 A-ATAAATAATA
4126235 AATAAATAATA
1 AATAAATAATA
* *
4126246 AAGATATACATA
1 AATAAATA-ATA
* *
4126258 TATTAATACATA
1 AATAAATA-ATA
4126270 GTAAT-AATAAATA
1 --AATAAAT-AATA
4126283 AATAAATAATA
1 AATAAATAATA
*
4126294 AATACATAA
1 AATAAATAA
4126303 GATACAAAGA
Statistics
Matches: 151, Mismatches: 29, Indels: 46
0.67 0.13 0.20
Matches are distributed among these distances:
8 5 0.03
9 26 0.17
10 20 0.13
11 50 0.33
12 37 0.25
13 10 0.07
14 3 0.02
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (11 bp):
AATAAATAATA
Found at i:4126181 original size:19 final size:21
Alignment explanation
Indices: 4126157--4126206 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
4126147 GATAAAAAAA
4126157 ATAATAAATAAAT-TATAA-T
1 ATAATAAATAAATATATAACT
4126176 ATAAT-AATAAATATATAACT
1 ATAATAAATAAATATATAACT
*
4126196 A-GATAAATAAA
1 ATAATAAATAAA
4126207 ATACATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 7 0.26
19 12 0.44
20 8 0.30
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
ATAATAAATAAATATATAACT
Found at i:4126205 original size:81 final size:77
Alignment explanation
Indices: 4126114--4126291 Score: 177
Period size: 81 Copynumber: 2.3 Consensus size: 77
4126104 ATAATTAAAA
*
4126114 AATAAT-AATAAGATAAATAAAAAAATATT-ACAAGATAAAAAAA-ATAATAAATAAA-TTATA-
1 AATAATAAATAA-ATAAATAAAAAAATATTAAC-AGA-AAAAAAATA-AAT-AATAAAGATATAC
4126174 ATATAATAATAAATATAT
61 ATATAATAATAAATA-AT
* * *
4126192 AACTAGATAAATAAAATACATATATAAATATTAACAGAAAAAAAATAAATAATAAAGATATACAT
1 AA-TA-ATAAAT-AAATAAATAAAAAAATATTAACAGAAAAAAAATAAATAATAAAGATATACAT
* * *
4126257 ATATTAATACATAGT
63 ATAATAATAAATAAT
4126272 AATAATAAATAAATAAATAA
1 AATAATAAATAAATAAATAA
4126292 TAAATACATA
Statistics
Matches: 83, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
77 8 0.10
78 8 0.10
79 10 0.12
80 19 0.23
81 34 0.41
82 4 0.05
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (77 bp):
AATAATAAATAAATAAATAAAAAAATATTAACAGAAAAAAAATAAATAATAAAGATATACATATA
ATAATAAATAAT
Found at i:4126238 original size:50 final size:49
Alignment explanation
Indices: 4126132--4126243 Score: 113
Period size: 50 Copynumber: 2.3 Consensus size: 49
4126122 TAAGATAAAT
* *
4126132 AAAAAAATAT-T-ACAAGATAAAAAAAATAATAAATAAATTATAATATA
1 AAAAAAATATATAACAAGATAAAAAAAATAATAAATAAATTATAACAGA
* * * *
4126179 ATAATAAATATATAACTAGATAAATAAAATACATATATAAA-TATTAACAGA
1 A-AAAAAATATATAACAAGATAAAAAAAATA-ATAAATAAATTA-TAACAGA
*
4126230 AAAAAAATAAATAA
1 AAAAAAATATATAA
4126244 TAAAGATATA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
47 1 0.02
48 8 0.15
49 1 0.02
50 28 0.54
51 14 0.27
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.26
Consensus pattern (49 bp):
AAAAAAATATATAACAAGATAAAAAAAATAATAAATAAATTATAACAGA
Found at i:4126346 original size:22 final size:22
Alignment explanation
Indices: 4126272--4126363 Score: 80
Period size: 23 Copynumber: 4.0 Consensus size: 22
4126262 AATACATAGT
*
4126272 AATAATAAATAAATAAATAATAAA
1 AATAATATA-AAATAAA-AATAAA
* * * *
4126296 TACATAAGATACAA-AGAAAGAAA
1 -A-ATAATATAAAATAAAAATAAA
4126319 AA-AATATAAAATAAAAATAAA
1 AATAATATAAAATAAAAATAAA
4126340 AATAATATAAAATACAAAATAAA
1 AATAATATAAAATA-AAAATAAA
4126363 A
1 A
4126364 GCCAAATTGG
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
20 7 0.13
21 10 0.19
22 12 0.22
23 14 0.26
24 2 0.04
25 3 0.06
26 6 0.11
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (22 bp):
AATAATATAAAATAAAAATAAA
Found at i:4126349 original size:17 final size:16
Alignment explanation
Indices: 4126319--4126363 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
4126309 AAGAAAGAAA
4126319 AAAATATAAAATAAAAAT
1 AAAA-ATAAAAT-AAAAT
*
4126337 AAAAATAATATAAAAT
1 AAAAATAAAATAAAAT
4126353 ACAAAATAAAA
1 A-AAAATAAAA
4126364 GCCAAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 14 0.58
18 4 0.17
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:4126635 original size:41 final size:41
Alignment explanation
Indices: 4126542--4127002 Score: 627
Period size: 41 Copynumber: 11.1 Consensus size: 41
4126532 TTTTACCAAA
* * * * *
4126542 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAGAAACATAAATA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATT
* * * * *
4126585 GCTCTTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
4126626 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
4126667 GCTCCTCTAAATAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
*
4126709 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
*
4126750 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* * *
4126791 GCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAGCAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
* *
4126833 GCTCCTCTAAACGGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* * * *
4126874 ACTCTTCTAAACAGAAGCATCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
4126915 GCTCCTCTAAACAGAGGCAGCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
4126956 GCTCCTCTAAACAGAGGCACGACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
4126997 GCTCCT
1 GCTCCT
4127003 TCACAATCAT
Statistics
Matches: 379, Mismatches: 35, Indels: 10
0.89 0.08 0.02
Matches are distributed among these distances:
40 5 0.01
41 263 0.69
42 82 0.22
43 29 0.08
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:4126763 original size:124 final size:123
Alignment explanation
Indices: 4126542--4127002 Score: 620
Period size: 124 Copynumber: 3.7 Consensus size: 123
4126532 TTTTACCAAA
* * * * * * * *
4126542 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAGAAACATAAA-TAGCTCTTCTAATCAGAGGCTCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATTA-CTCCTCTAAACAGAGGCACC
* *
4126606 ACGACTTTGAAAAATAAATTACTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
63 ACGACTTTGGAAAATAAATTACTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
4126667 GCTCCTCTAAATAGAGGCACCACGACTTTTGGAAAGTAAATTACTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTACTCCTCTAAACAGAGGCACCAC
* *
4126732 GACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
65 GACTTTGGAAAATAAATTACTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* * * *
4126791 GCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAGCAAATTGCTCCTCTAAACGGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTACTCCTCTAAACAGAGGCACCAC
* * * *
4126856 GACTTTGGAAAGTAAATTACTCTTCTAAACAGAAGCATCACGACTTTGAAAAGTAAATT
65 GACTTTGGAAAATAAATTACTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* * * *
4126915 GCTCCTCTAAACAGAGGCAGCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACGACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTACTCCTCTAAACAGAGGCACCACG
*
4126980 ACTTT-GAAAAGTAAATTGCTCCT
66 ACTTTGGAAAA-TAAATTACTCCT
4127003 TCACAATCAT
Statistics
Matches: 300, Mismatches: 33, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
122 4 0.01
123 50 0.17
124 214 0.71
125 28 0.09
126 4 0.01
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (123 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTACTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAATAAATTACTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:4126817 original size:165 final size:164
Alignment explanation
Indices: 4126543--4127002 Score: 688
Period size: 165 Copynumber: 2.8 Consensus size: 164
4126533 TTTACCAAAG
* * * * * * * *
4126543 CTCCTCTAAGCAGAGGCTCAACGACTTTGAGAAACATAAATAGCTCTTCTAATCAGAGGCTCAAC
1 CTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACCAC
*
4126608 GACTTTGAAAAATAAATTACTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCT
64 GACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCT
*
4126673 CTAAATAGAGGCACCACGACTTTTGGAAAGTAAATTA
129 CTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTA
4126710 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGA
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGA
* *
4126775 CTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACCACGACTTTTGGAAAGCAAATTGCTCCTC
66 CTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTC
*
4126840 TAAACGGAGGCACCACGACTTTGGAAAGTAAATTA
130 TAAACAGAGGCACCACGACTTTGGAAAGTAAATTA
* * * *
4126875 CTCTTCTAAACAGAAGCATCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCAGCACG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACCACG
* * *
4126939 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACGACGACTTTGAAAAGTAAATTGCTCCT
65 ACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCT
4127003 TCACAATCAT
Statistics
Matches: 269, Mismatches: 22, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
164 24 0.09
165 177 0.66
166 42 0.16
167 26 0.10
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (164 bp):
CTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACGA
CTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCT
AAACAGAGGCACCACGACTTTGGAAAGTAAATTA
Found at i:4134409 original size:20 final size:20
Alignment explanation
Indices: 4134386--4134424 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4134376 ATCAAAAATT
4134386 AAAAAAAAAATAAAAAATAA
1 AAAAAAAAAATAAAAAATAA
***
4134406 AAAAATTTAATAAAAAATA
1 AAAAAAAAAATAAAAAATA
4134425 GATTTTGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAAAAAAAATAAAAAATAA
Found at i:4134998 original size:165 final size:166
Alignment explanation
Indices: 4134793--4135124 Score: 596
Period size: 165 Copynumber: 2.0 Consensus size: 166
4134783 AAAAAATATG
4134793 TATTTCAAATTCATCTACATCTTGTTTAGTGTAAATCATTGGTTTAACCCTAATGATTTTTGTGG
1 TATTTCAAATTCATCTACATCTTGTTTAGTGTAAATCATTGGTTTAACCCTAATGATTTTTGTGG
*
4134858 GATCTACTATTTGTAGCTCACAGAATCTAGGACTTTAG-GACCATAATTTTAGTGGTTCTTCACT
66 GATCTACTATTTGTAGCTCACAGAATCTAGGAC-TTAGTGACCACAATTTTAGTGGTTCTTCACT
4134922 AAAATTTTCTTAAAGGATAGAATATAACCAATGTTTT
130 AAAATTTTCTTAAAGGATAGAATATAACCAATGTTTT
*
4134959 TATTTCAAA-TCATCTACATCTTGTTTAGTGTAGATCATTGGTTTAACCCTAATGATTTTTGTGG
1 TATTTCAAATTCATCTACATCTTGTTTAGTGTAAATCATTGGTTTAACCCTAATGATTTTTGTGG
* * *
4135023 TATCTACTATTTGTAGCTCATAGAATCTAGGACTTCGTGACCACAATTTTAGTGGTTCTTCACTA
66 GATCTACTATTTGTAGCTCACAGAATCTAGGACTTAGTGACCACAATTTTAGTGGTTCTTCACTA
4135088 AAATTTTCTTAAAGGATAGAATATAACCAATGTTTT
131 AAATTTTCTTAAAGGATAGAATATAACCAATGTTTT
4135124 T
1 T
4135125 CATTGATTAT
Statistics
Matches: 160, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
164 3 0.02
165 148 0.93
166 9 0.06
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (166 bp):
TATTTCAAATTCATCTACATCTTGTTTAGTGTAAATCATTGGTTTAACCCTAATGATTTTTGTGG
GATCTACTATTTGTAGCTCACAGAATCTAGGACTTAGTGACCACAATTTTAGTGGTTCTTCACTA
AAATTTTCTTAAAGGATAGAATATAACCAATGTTTT
Found at i:4147205 original size:215 final size:215
Alignment explanation
Indices: 4146832--4147263 Score: 634
Period size: 215 Copynumber: 2.0 Consensus size: 215
4146822 ATTTTACTTG
*
4146832 CTAACTAACATTTTGCTTTTCTTTTGTGTGCATAATTCATATTACCATTCATAAATTTACATAAA
1 CTAACTAACATTTTGCTTTTCTTTTGCGTGCATAATTCATATTACCATTCATAAATTTACATAAA
* * * *
4146897 CAATATTTTTCTTGAAGATAGTTTCAACAAAGAGTTTTCATGGAGTTCATGGAACGTTTAGTTTG
66 CAATATTTTTCCTGAAGATAGATTCAACAAAGAGTTTTCATGGAGTCCATAGAACGTTTAGTTTG
* *** ** * * *
4146962 TTCCTTGTCTACTTATGTTATGTGTGAGACAACC-AATGAAGTGATGACCAAGTTAGAGAGAACT
131 TTCCTTGTCTACTAAAACTAACTGTGAGAC-ACCTAATGAAATGATGACCAAGTTAAAAAGAACT
* *
4147026 CAACAGAAGGAAAAGGATTGT
195 CAACACAAGGAAAAAGATTGT
*
4147047 CTAACTAACTTTTTGCTTTTCTTTTGCGTGCATAATTCATATTACCATTCATAAATTTACATAAA
1 CTAACTAACATTTTGCTTTTCTTTTGCGTGCATAATTCATATTACCATTCATAAATTTACATAAA
* * *
4147112 GAATA-TTTTCGCTGAAGATAGATTCAATAAAGATTTTTCATGGAGTCCATAGAACGTTTAGTTT
66 CAATATTTTTC-CTGAAGATAGATTCAACAAAGAGTTTTCATGGAGTCCATAGAACGTTTAGTTT
* *
4147176 GTTCCTTGTCTACTAAAACTAACTGTGAGACACCTAATGAAATGATGTCTAAGTTAAAAAGAACT
130 GTTCCTTGTCTACTAAAACTAACTGTGAGACACCTAATGAAATGATGACCAAGTTAAAAAGAACT
4147241 CAACACAAGGAAAAAGATTGT
195 CAACACAAGGAAAAAGATTGT
4147262 CT
1 CT
4147264 GCTAATGGGT
Statistics
Matches: 193, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
214 8 0.04
215 185 0.96
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36
Consensus pattern (215 bp):
CTAACTAACATTTTGCTTTTCTTTTGCGTGCATAATTCATATTACCATTCATAAATTTACATAAA
CAATATTTTTCCTGAAGATAGATTCAACAAAGAGTTTTCATGGAGTCCATAGAACGTTTAGTTTG
TTCCTTGTCTACTAAAACTAACTGTGAGACACCTAATGAAATGATGACCAAGTTAAAAAGAACTC
AACACAAGGAAAAAGATTGT
Found at i:4147579 original size:13 final size:12
Alignment explanation
Indices: 4147551--4147598 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
4147541 GTGTATCTAC
*
4147551 AAAAATATTATA
1 AAAAATATCATA
4147563 AAAAATATCATA
1 AAAAATATCATA
*
4147575 GAAAA-ATCAT-
1 AAAAATATCATA
*
4147585 AAATATATCATA
1 AAAAATATCATA
4147597 AA
1 AA
4147599 TGTCATGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
10 3 0.10
11 10 0.33
12 17 0.57
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (12 bp):
AAAAATATCATA
Found at i:4147614 original size:22 final size:23
Alignment explanation
Indices: 4147589--4147636 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
4147579 AATCATAAAT
* *
4147589 ATATCATAAATG-TCATGCAATA
1 ATATCATAAATGAACATGCAAAA
4147611 ATATCATAAATGAACATGCAAAA
1 ATATCATAAATGAACATGCAAAA
4147634 ATA
1 ATA
4147637 ACAAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.27
Consensus pattern (23 bp):
ATATCATAAATGAACATGCAAAA
Found at i:4147636 original size:23 final size:22
Alignment explanation
Indices: 4147589--4147655 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
4147579 AATCATAAAT
* *
4147589 ATATCATAAATGTCATGCAATA
1 ATATCATAAATGACATGCAAAA
4147611 ATATCATAAATGAACATGCAAAA
1 ATATCATAAATG-ACATGCAAAA
* * *
4147634 ATAACAAAAAT-ATATGCAAAA
1 ATATCATAAATGACATGCAAAA
4147655 A
1 A
4147656 CATCGTGCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 10 0.26
22 12 0.31
23 17 0.44
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.24
Consensus pattern (22 bp):
ATATCATAAATGACATGCAAAA
Found at i:4147788 original size:8 final size:8
Alignment explanation
Indices: 4147775--4147805 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
4147765 TTAAAAAGTA
4147775 AATAAAAT
1 AATAAAAT
4147783 AATAAAAT
1 AATAAAAT
*
4147791 AATAAAGT
1 AATAAAAT
4147799 AATAAAA
1 AATAAAA
4147806 AAACAGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (8 bp):
AATAAAAT
Found at i:4148733 original size:3 final size:3
Alignment explanation
Indices: 4148725--4148750 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4148715 AAATAAAATT
4148725 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
4148751 CAAAATGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:4150261 original size:20 final size:21
Alignment explanation
Indices: 4150236--4150277 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
4150226 CTTTTTCTTC
4150236 TTTCCTTTTTTAC-TCATTTT
1 TTTCCTTTTTTACATCATTTT
*
4150256 TTTCCTTTTTTCCATCATTTT
1 TTTCCTTTTTTACATCATTTT
4150277 T
1 T
4150278 AAAATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTCCTTTTTTACATCATTTT
Found at i:4155381 original size:369 final size:364
Alignment explanation
Indices: 4154697--4155677 Score: 1027
Period size: 369 Copynumber: 2.7 Consensus size: 364
4154687 ATGACTCTTG
* * * *
4154697 TGTCATGGACCTAAGGAGGAGTCTTGAATCCTACATCGTATATAAAAGAAAGGTCAATATGGTAT
1 TGTCACGGACCTAAGGAGAAGTCTTGAATCC-ACATCGAATATAAAAGAAAGGTCAATAGGGTAT
* * * *
4154762 ATAAGGGTTCACACCACCTTTTCCTTGTGAGGCACCTTTTGTAGGATAAAACTATAAGGCAAAGG
65 ATAAGGGTTCACACCACCTCTTCCTTGTGAGGCACCTTTTGTAGGATAAAACT-GAAGCCAGAGG
*** * * * * *
4154827 GGTTGAGCTGATAATACCTTACAATGGTGTGAACTATGATAGGTAGGCTAATCTAGGACACCGGA
129 GCCAGAGC-GATAATACCTCACAA-GGTGTGAACCATGAGAGGTAAGCTAATCTAGGACACCGAA
* * * *** * *
4154892 TGAGTGGATGCCCAGGTCTTGGAGTCGCACAGGTCAGAGCTTGAGTCTCGACACATGACAAGTGG
192 TGAATGCATGCCCAGATCCCAGAGTCGCACAGGTCAGAGCTTAACTCTCGACACATGACAAGTGG
* * **
4154957 TATCAGAGCTAGCCCTAAATCATTCGATCCACACCAAGCCCCTCAAGGGAGGTAGGCAGGGTGGC
257 CATCAGAGCCAGCCCTAAATCATTCGATCCACACCAAGCCCCTCAAGGGAGGTAGGCAGGGTAAC
* *
4155022 CAGCCTTCGTGATGAAGACGTCACGAGATTGGGTGAGAGAGAA
322 CAACCTTCGTGACGAAGACGTCACGAGATTGGGTGAGAGAGAA
* * *
4155065 TGTCACGGACCTAAGAAGAATTCTTGAATCTCACATCGAATATAAAAGAAAGGTCATTAGGGTAT
1 TGTCACGGACCTAAGGAGAAGTCTTGAATC-CACATCGAATATAAAAGAAAGGTCAATAGGGTAT
4155130 ATAA-GGTTCACACCACCTCTTCCTTGTGAGGCACCTTTTGTAGGATAAAATCGTGAAGCCAGGA
65 ATAAGGGTTCACACCACCTCTTCCTTGTGAGGCACCTTTTGTAGGATAAAA-C-TGAAGCCA-GA
* * * * *
4155194 GGGCCAAAACGAATAATACCTCACAAGAGTGTGAACCATG-GCGGTCAAGCTAATCTGGGACATC
127 GGGCCAGAGCG-ATAATACCTCACAAG-GTGTGAACCATGAGAGGT-AAGCTAATCTAGGACACC
* * * *
4155258 GAATGAATGCATGCCCCGATCCCAGAG-C-CATGTAGTTCAGAGCTTAACTCTCGACCCATGACA
189 GAATGAATGCATGCCCAGATCCCAGAGTCGCA--CAGGTCAGAGCTTAACTCTCGACACATGACA
* * * ** * *
4155321 AGTGGCATTAGAGCCAGCCCTAAATCGTTTGATCCACGTCAAGCCCCTCGAGGGAGGTAGGTAGG
252 AGTGGCATCAGAGCCAGCCCTAAATCATTCGATCCACACCAAGCCCCTCAAGGGAGGTAGGCAGG
* * * * * * * *
4155386 GTAACTAACCTTCGTGACGAGGGCTTCATGAGGTTGGGTGGGGGAGAA
317 GTAACCAACCTTCGTGACGAAGACGTCACGAGATTGGGTGAGAGAGAA
* *
4155434 TGTCACGGACCTAAGGAGAAGTCCTGAATCCCACATCGAATATAAAA-AGAAGGTCACTAGGGTA
1 TGTCACGGACCTAAGGAGAAGTCTTGAAT-CCACATCGAATATAAAAGA-AAGGTCAATAGGGTA
* ** * * *
4155498 TATAAGGGTTCACACCACCTCTTTCTTGTGAGGTTCCTTTTGTAGGATAAAACCTGAGGCTAGAA
64 TATAAGGGTTCACACCACCTCTTCCTTGTGAGGCACCTTTTGTAGGATAAAA-CTGAAGCCAGAG
* ** * * * * ** *
4155563 GGCCAGAGCGGACAATACCTCACAAGGGTGTGAACTGTGACAGGTAGGCTGATCTAGAACGTCGG
128 GGCCAGAGC-GATAATACCTCACAA-GGTGTGAACCATGAGAGGTAAGCTAATCTAGGACACCGA
* * * * * * *
4155628 ATGAATGGATGCCCAGATCCTATAGTCACGCGGGTCAGAGCTTAAGTCTC
191 ATGAATGCATGCCCAGATCCCAGAGTCGCACAGGTCAGAGCTTAACTCTC
4155678 AACATGTGAT
Statistics
Matches: 506, Mismatches: 90, Indels: 34
0.80 0.14 0.05
Matches are distributed among these distances:
367 47 0.09
368 156 0.31
369 257 0.51
370 46 0.09
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (364 bp):
TGTCACGGACCTAAGGAGAAGTCTTGAATCCACATCGAATATAAAAGAAAGGTCAATAGGGTATA
TAAGGGTTCACACCACCTCTTCCTTGTGAGGCACCTTTTGTAGGATAAAACTGAAGCCAGAGGGC
CAGAGCGATAATACCTCACAAGGTGTGAACCATGAGAGGTAAGCTAATCTAGGACACCGAATGAA
TGCATGCCCAGATCCCAGAGTCGCACAGGTCAGAGCTTAACTCTCGACACATGACAAGTGGCATC
AGAGCCAGCCCTAAATCATTCGATCCACACCAAGCCCCTCAAGGGAGGTAGGCAGGGTAACCAAC
CTTCGTGACGAAGACGTCACGAGATTGGGTGAGAGAGAA
Found at i:4157140 original size:145 final size:141
Alignment explanation
Indices: 4156824--4157141 Score: 329
Period size: 145 Copynumber: 2.2 Consensus size: 141
4156814 TTTCGATCCT
* * * * *
4156824 AAAATGAGTAAAATTACAAACATACCTTCTAAGGGTATTTTGTAATTTGGCCTTTTAAGATTAGG
1 AAAAGGAGT-AAATTACAAAAATACCCT-TAAGGGTATTTTGTAATTTGACCTTTTAAGACTAGG
* *
4156889 TTTTTATGAAACACTCCTAATCATATTTAGATATTATCTCATGAATTTTGGTACATTAAAAGCCC
64 TTTTTATGAAACACTCCTAATCATATTTAGATATTATCTCATGAATTTTGATACATTAAAAACCC
*
4156954 TCAATTGCACCTT
129 TCAATTGCACCTC
* * * *
4156967 GAAAGG-GTGAAATTACTAAAATAACCTTAAGGGGTATTTTTGTAATTTGACCTTTTAAAGGCT-
1 AAAAGGAGT-AAATTACAAAAATACCCTTAA-GGGTA-TTTTGTAATTTGACCTTTT-AAGACTA
* * * * *
4157030 GGTTTTTTTGTGAAACA-TTCTAAATCATGTTTAGATATTATTTCATGAATTTTGATATATTAAA
62 GG--TTTTTATGAAACACTCCT-AATCATATTTAGATATTATCTCATGAATTTTGATACATTAAA
* * *
4157094 AATCCT-GATTTCACCTC
124 AACCCTCAATTGCACCTC
*
4157111 AAAAGGAGTAATATTACAAAAATGCCCTTAA
1 AAAAGGAGTAA-ATTACAAAAATACCCTTAA
4157142 AAGGCATGAA
Statistics
Matches: 142, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
141 3 0.02
142 21 0.15
143 24 0.17
144 22 0.15
145 72 0.51
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (141 bp):
AAAAGGAGTAAATTACAAAAATACCCTTAAGGGTATTTTGTAATTTGACCTTTTAAGACTAGGTT
TTTATGAAACACTCCTAATCATATTTAGATATTATCTCATGAATTTTGATACATTAAAAACCCTC
AATTGCACCTC
Found at i:4158288 original size:20 final size:19
Alignment explanation
Indices: 4158238--4158307 Score: 56
Period size: 18 Copynumber: 3.7 Consensus size: 19
4158228 AAGCTTCCCT
*
4158238 AAACCCTAAAAC-T-AACCA
1 AAACCCT-AAACTTAAACTA
*
4158256 AAACGCTAAACTTTAAACTA
1 AAACCCTAAAC-TTAAACTA
*
4158276 AAACCCTAGACTTAAACT-
1 AAACCCTAAACTTAAACTA
* *
4158294 CAATCCTAAACTTA
1 AAACCCTAAACTTA
4158308 CCCTAAAGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 4 0.10
18 17 0.40
19 8 0.19
20 13 0.31
ACGTcount: A:0.49, C:0.27, G:0.03, T:0.21
Consensus pattern (19 bp):
AAACCCTAAACTTAAACTA
Found at i:4158369 original size:17 final size:18
Alignment explanation
Indices: 4158347--4158380 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4158337 TAGTTTGTAA
*
4158347 CCCT-AATCTAACCCAAG
1 CCCTAAATCCAACCCAAG
4158364 CCCTAAATCCAACCCAA
1 CCCTAAATCCAACCCAA
4158381 ATCCTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.38, C:0.44, G:0.03, T:0.15
Consensus pattern (18 bp):
CCCTAAATCCAACCCAAG
Found at i:4163220 original size:73 final size:73
Alignment explanation
Indices: 4163143--4163283 Score: 169
Period size: 73 Copynumber: 1.9 Consensus size: 73
4163133 TCCATGAGGG
* * * *
4163143 GATCAATC-CTATCAAGTGTTTTGAGCAAAATTT-TTATTCTGGAACAAAAAGGGATCAATTGGG
1 GATCAATCACT-TCAAGGGTTTTAAGCAAAATTTGCT-TTCTGGAACAAAAAGGGATCAATCGGG
4163206 AAAAATAGGT
64 AAAAATAGGT
** * * *
4163216 GATCAATCACTTTTAGGGTTTTAAGCAAAATTTGCTTTCTGTAACAAAAATGGATCAATCGGGTA
1 GATCAATCACTTCAAGGGTTTTAAGCAAAATTTGCTTTCTGGAACAAAAAGGGATCAATCGGGAA
4163281 AAA
66 AAA
4163284 CAGAAGATTG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
73 54 0.95
74 3 0.05
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (73 bp):
GATCAATCACTTCAAGGGTTTTAAGCAAAATTTGCTTTCTGGAACAAAAAGGGATCAATCGGGAA
AAATAGGT
Found at i:4179014 original size:62 final size:62
Alignment explanation
Indices: 4178902--4179138 Score: 200
Period size: 62 Copynumber: 3.8 Consensus size: 62
4178892 GTATTTTATG
* * *
4178902 CAAAAAATGCCTTGAATCATTTTTTA-AAAAAATTT-AAGGGAGTTATTGAAAGCGTTTTCTT
1 CAAAATATGCCTTCAATAATTTTTTATAAAAAATTTCAAGGGA-TTATTGAAAGCGTTTTCTT
* * * *
4178963 CAAAATACGCCTTCAGTAATTTTTTATAAAAAATTTTCAA-GGCTTATTGAAAGTGTTTT-TGGT
1 CAAAATATGCCTTCAATAATTTTTTATAAAAAA-TTTCAAGGGATTATTGAAAGCGTTTTCT--T
* * * * * * *
4179026 -AAACA-ATGCCTTGAATAATTCTCTCATAAAAAA-TTGAAGGGATTATTGAAGGCATTTTTCTA
1 CAAA-ATATGCCTTCAATAATT-TTTTATAAAAAATTTCAAGGGATTATTGAAAGC-GTTTTCTT
* * * *
4179088 CAAAATATGCCTTCACTAATTTTTTTTAAAAATTTTCAATGGATTATTGAA
1 CAAAATATGCCTTCAATAATTTTTTATAAAAAATTTCAAGGGATTATTGAA
4179139 GGTATTTTTT
Statistics
Matches: 137, Mismatches: 26, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
61 26 0.19
62 56 0.41
63 52 0.38
64 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (62 bp):
CAAAATATGCCTTCAATAATTTTTTATAAAAAATTTCAAGGGATTATTGAAAGCGTTTTCTT
Found at i:4179085 original size:125 final size:123
Alignment explanation
Indices: 4178907--4179147 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 123
4178897 TTATGCAAAA
* * * * *
4178907 AATGCCTTGAATCATTTTTTAAAAAAATTTAAGGGAGTTATTGAAAGCGTTTTCTTCAAAATACG
1 AATGCCTTGAATAATTTCTCAAAAAAATTGAAGGGAGTTATTGAAAGCGTTTTCTACAAAATACG
* * *
4178972 CCTTCAGTAATTTTTTATAAAAAATTTTCAA-GGCTTATTGAAAGTGTTTTTGGTAAAC
66 CCTTCACTAATTTTTT-TAAAAAATTTTCAATGGATTATTGAAAGTATTTTTGGTAAAC
* *
4179030 AATGCCTTGAATAATTCTCTCATAAAAAATTGAAGGGA-TTATTGAAGGCATTTTTCTACAAAAT
1 AATGCCTTGAATAATT-TCTCA-AAAAAATTGAAGGGAGTTATTGAAAGC-GTTTTCTACAAAAT
* * *
4179094 ATGCCTTCACTAATTTTTTTTAAAAATTTTCAATGGATTATTGAAGGTATTTTT
63 ACGCCTTCACTAATTTTTTTAAAAAATTTTCAATGGATTATTGAAAGTATTTTT
4179148 TACTAAAAAC
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
123 15 0.15
124 26 0.26
125 60 0.59
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (123 bp):
AATGCCTTGAATAATTTCTCAAAAAAATTGAAGGGAGTTATTGAAAGCGTTTTCTACAAAATACG
CCTTCACTAATTTTTTTAAAAAATTTTCAATGGATTATTGAAAGTATTTTTGGTAAAC
Found at i:4179108 original size:63 final size:61
Alignment explanation
Indices: 4178904--4179169 Score: 191
Period size: 62 Copynumber: 4.3 Consensus size: 61
4178894 ATTTTATGCA
* * * * * *
4178904 AAAAATGCCTTGAATCATTTTTTA-AAAAAATTTAAGGGAGTTATTGAAAGC-GTTTTCTTC
1 AAAAACGCCTTCAATAATTTTTTATAAAAAATTCAAGGGA-TTATTGAAAGCATTTTTCTAC
* * ** *
4178964 AAAATACGCCTTCAGTAATTTTTTATAAAAAATTTTCAA-GGCTTATTGAAAGTGTTTTTGGTA-
1 AAAA-ACGCCTTCAATAATTTTTTATAAAAAA--TTCAAGGGATTATTGAAAGCATTTTT-CTAC
* * * * * * *
4179027 AACAATGCCTTGAATAATTCTCTCATAAAAAATTGAAGGGATTATTGAAGGCATTTTTCTAC
1 AAAAACGCCTTCAATAATT-TTTTATAAAAAATTCAAGGGATTATTGAAAGCATTTTTCTAC
* * * * * * *
4179089 AAAATATGCCTTCACTAATTTTTTTTAAAAATTTTCAATGGATTATTGAAGGTATTTTT-TAC
1 AAAA-ACGCCTTCAATAATTTTTTATAAAAA-ATTCAAGGGATTATTGAAAGCATTTTTCTAC
4179151 TAAAAACGCCTTCAATAAT
1 -AAAAACGCCTTCAATAAT
4179170 CTTTCGTCAA
Statistics
Matches: 160, Mismatches: 34, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
60 4 0.03
61 22 0.14
62 70 0.44
63 59 0.37
64 5 0.03
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (61 bp):
AAAAACGCCTTCAATAATTTTTTATAAAAAATTCAAGGGATTATTGAAAGCATTTTTCTAC
Found at i:4179204 original size:61 final size:63
Alignment explanation
Indices: 4179065--4179207 Score: 166
Period size: 62 Copynumber: 2.3 Consensus size: 63
4179055 AAAATTGAAG
* * * * ** **
4179065 GGATTATTGAAGGCATTTTTCTACAAAATATGCCTTCACTAATTTTTTTTAAAAATTTTCAAT
1 GGATTATTGAAGGTATTTTTCTACAAAATACGCCTTCAATAATCTTTCGTAAAAATTTAAAAT
*
4179128 GGATTATTGAAGGTATTTTT-TACTAAAA-ACGCCTTCAATAATCTTTCGTCAAAATTTAAAAT
1 GGATTATTGAAGGTATTTTTCTAC-AAAATACGCCTTCAATAATCTTTCGTAAAAATTTAAAAT
*
4179190 -GATTATTAAAGGTATTTT
1 GGATTATTGAAGGTATTTT
4179208 CTGCCTGAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
61 17 0.25
62 29 0.42
63 23 0.33
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (63 bp):
GGATTATTGAAGGTATTTTTCTACAAAATACGCCTTCAATAATCTTTCGTAAAAATTTAAAAT
Found at i:4185460 original size:160 final size:157
Alignment explanation
Indices: 4185119--4185980 Score: 640
Period size: 160 Copynumber: 5.4 Consensus size: 157
4185109 TAATAAGTTT
* * * *** *
4185119 ATGATATTAAACTTATCCGAATGAA-TGAACTTGGTTTCCATTATTGATATATGTGTCGTAATTT
1 ATGATATTAAACTTATCCGAAT-AATTGAACTTAGTTTCCACTATTGATATGTGTG-AAAAAGTT
* ** * * ** * * * ***
4185183 GTAATTTATGTCTGTTTATAACTTTTTGTGCCGTTACAAGGTAATAATGCAAAATTACAATTATT
64 ATCGTTTACGTCTATTTAGGACATTTTGTG-CGTTA-AAGGTAAAAATAC-AAATTTGGA-TATT
* * * * *
4185248 GTTCTGTTTTAATAGTTTTGATAGTTTCAATAC
125 ATTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *
4185281 ATGATATTAAACTTATCCAAATTATTGAACTTAGTTTTCACTATTGATATGTATGAAAAAGTTAT
1 ATGATATTAAACTTATCCGAATAATTGAACTTAGTTTCCACTATTGATATGTGTGAAAAAGTTAT
* * * * * * *
4185346 TGTTTATGTCTATTTAGGATATTTTGTGCATTAATAGGTAAAAATACAAATTTGGGCAAACTGTT
66 CGTTTACGTCTATTTAGGACATTTTGTGCGTTAA-AGGTAAAAATACAAATTT-GG-ATATTATT
* *
4185411 ATATTTTAACAGTTTGGATAGCTCCAATAC
128 CTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *
4185441 ATGATATTAAACTTATCCAAATAATTGAACTTGGTTTCCACAATTTATATGTGTGAAAAAGTTAT
1 ATGATATTAAACTTATCCGAATAATTGAACTTAGTTTCCACTATTGATATGTGTGAAAAAGTTAT
* * * * * * ** * * * *
4185506 CGTTTACGCCTGTTGAAGACCTTTTGTGTTGTTAAGAGCCAAACATGCAAATTTTTGTTATTATT
66 CGTTTACGTCTATTTAGGACATTTTGTG-CGTTAA-AGGTAAAAATACAAA-TTTGGATATTATT
* * *
4185571 CTATTTTAACAGTTTGCATAGCTTAAATAT
128 CTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * *
4185601 ATGATATTAAACTTGTCGGAATAATTGAACTTGGTTTCCA-TAGTTGATATATGTGAAAAAGCTA
1 ATGATATTAAACTTATCCGAATAATTGAACTTAGTTTCCACTA-TTGATATGTGTGAAAAAG-TT
* * * * * *
4185665 AT-GTTTACGTTTGTTTAGGACATTTTATTCTGTTAAAAGTAAAAATGCAAATTT-GATATTATT
64 ATCGTTTACGTCTATTTAGGACATTTTGTGC-GTTAAAGGTAAAAATACAAATTTGGATATTA--
*
4185728 GTTCTATTTTAACAGTTTGGATAGCTTTAATAC
126 -TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * *
4185761 ATTATATTAAACTT-TGCCTGAATTATTGAACTTGGTTTCTACTATTAATATGTATGAAAAAGTT
1 ATGATATTAAACTTAT-CC-GAATAATTGAACTTAGTTTCCACTATTGATATGTGTGAAAAAGTT
* * * * * * *
4185825 CTCATTTACATCTATTTAGGACTATTTT-TACCGTTAAAAGGTAAAAATATAAATTTACTGTTAT
64 ATCGTTTACGTCTATTTAGGAC-ATTTTGT-GCGTT-AAAGGTAAAAATACAAATTT--GGATAT
* * * *
4185889 TAATCTATTTTAACAATTTGGATGGCTTCAATAT
124 TATTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * *
4185923 ATGATATTAAACTTTTTCGAATGATTGAACTTAGTTTCCA-TGATTGATATGTGTGAAA
1 ATGATATTAAACTTATCCGAATAATTGAACTTAGTTTCCACT-ATTGATATGTGTGAAA
4185981 GGCCCAAATG
Statistics
Matches: 559, Mismatches: 117, Indels: 49
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.01
158 3 0.01
159 19 0.03
160 275 0.49
161 134 0.24
162 115 0.21
163 1 0.00
165 6 0.01
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (157 bp):
ATGATATTAAACTTATCCGAATAATTGAACTTAGTTTCCACTATTGATATGTGTGAAAAAGTTAT
CGTTTACGTCTATTTAGGACATTTTGTGCGTTAAAGGTAAAAATACAAATTTGGATATTATTCTA
TTTTAACAGTTTGGATAGCTTCAATAC
Found at i:4185709 original size:320 final size:320
Alignment explanation
Indices: 4185243--4185980 Score: 763
Period size: 320 Copynumber: 2.3 Consensus size: 320
4185233 AAAATTACAA
* * * * * * *
4185243 TTATTGTTCTGTTTTAATAGTTTTGATAGTTTCAATACATGATATTAAACTTATCCAAATTATTG
1 TTATTATTCTATTTTAACAG-TTTGATAGCTTCAATATATGATATTAAACTTAT-CGAATAATTG
* * * * * * *
4185308 AACTTAGTTTTCACTA-TTGATATGTATGAAAAAGTTATTGTTTATGTCTATTTAGGATATTTTG
64 AACTTAGTTTCCA-TAGTTGATATGTGTGAAAAAGCTAATGTTTACGTCTATTTAGGACATTTTA
* *
4185372 TGCATTAATAGGTAAAAATACAAATTTGGGCA-AACTGTTATATTTTAACAGTTTGGATAGCTCC
128 TGCATTAATAAGTAAAAATACAAATTT-GACATAACTGTTATATTTTAACAGTTTGGATAGCTCC
* *
4185436 AATACATGATATTAAACTTAT-CC-AAATAATTGAACTTGGTTTCCACAATTTATATGTGTGAAA
192 AATACATGATATTAAACTT-TGCCTAAATAATTGAACTTGGTTTCCACAATTAATATGTATGAAA
* * * *** * * * *
4185499 AAGTTATCGTTTACGCCTGTTGAAGACCT-TTTGTGTTGTTAAGAGCCAAACATGCAAATTT-TT
256 AAGTTATCATTTACACCTATTGAAGA-CTATTTGTACCGTTAAAAGCCAAAAATACAAATTTACT
4185562 G
320 G
* *
4185563 TTATTATTCTATTTTAACAGTTTGCATAGCTTAAATATATGATATTAAACTTGTCGGAATAATTG
1 TTATTATTCTATTTTAACAGTTTG-ATAGCTTCAATATATGATATTAAACTTATC-GAATAATTG
* * * *
4185628 AACTTGGTTTCCATAGTTGATATATGTGAAAAAGCTAATGTTTACGTTTGTTTAGGACATTTTAT
64 AACTTAGTTTCCATAGTTGATATGTGTGAAAAAGCTAATGTTTACGTCTATTTAGGACATTTTAT
* * * * * * * **
4185693 TCTGTTAA-AAGTAAAAATGCAAATTTGATATTATTGTTCTATTTTAACAGTTTGGATAGCTTTA
129 GC-ATTAATAAGTAAAAATACAAATTTGACATAACTGTTATATTTTAACAGTTTGGATAGCTCCA
* * * * *
4185757 ATACATTATATTAAACTTTGCCTGAATTATTGAACTTGGTTTCTACTATTAATATGTATGAAAAA
193 ATACATGATATTAAACTTTGCCTAAATAATTGAACTTGGTTTCCACAATTAATATGTATGAAAAA
* * * * * ** *
4185822 GTTCTCATTTACATCTATTTAGGACTATTTTTACCGTTAAAAGGTAAAAATATAAATTTACTG
258 GTTATCATTTACACCTATTGAAGACTATTTGTACCGTTAAAAGCCAAAAATACAAATTTACTG
* * * * *
4185885 TTATTAATCTATTTTAACAATTTGGATGGCTTCAATATATGATATTAAACTTTTTCGAATGATTG
1 TTATTATTCTATTTTAACAGTTT-GATAGCTTCAATATATGATATTAAAC-TTATCGAATAATTG
4185950 AACTTAGTTTCCAT-GATTGATATGTGTGAAA
64 AACTTAGTTTCCATAG-TTGATATGTGTGAAA
4185981 GGCCCAAATG
Statistics
Matches: 342, Mismatches: 64, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
319 10 0.03
320 166 0.49
321 80 0.23
322 81 0.24
323 5 0.01
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.42
Consensus pattern (320 bp):
TTATTATTCTATTTTAACAGTTTGATAGCTTCAATATATGATATTAAACTTATCGAATAATTGAA
CTTAGTTTCCATAGTTGATATGTGTGAAAAAGCTAATGTTTACGTCTATTTAGGACATTTTATGC
ATTAATAAGTAAAAATACAAATTTGACATAACTGTTATATTTTAACAGTTTGGATAGCTCCAATA
CATGATATTAAACTTTGCCTAAATAATTGAACTTGGTTTCCACAATTAATATGTATGAAAAAGTT
ATCATTTACACCTATTGAAGACTATTTGTACCGTTAAAAGCCAAAAATACAAATTTACTG
Found at i:4189061 original size:35 final size:35
Alignment explanation
Indices: 4189022--4189120 Score: 85
Period size: 35 Copynumber: 2.8 Consensus size: 35
4189012 TACTCACATG
*
4189022 AAATTTATTATTTTTAAGTTTTTAAAATTTTTATA
1 AAATTTATTATTTTTAAGTTTTTAAAATTTTTAGA
* ***
4189057 AAATTT-TTCATTTTTTAA-TTTATATGTTTTTTAGA
1 AAATTTATT-A-TTTTTAAGTTTTTAAAATTTTTAGA
* *
4189092 AAATTTTATAATGTTTTACGTTTTTAAAA
1 AAA-TTTATTAT-TTTTAAGTTTTTAAAA
4189121 AGAGTTTTTA
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
34 2 0.04
35 23 0.49
36 16 0.34
37 6 0.13
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (35 bp):
AAATTTATTATTTTTAAGTTTTTAAAATTTTTAGA
Found at i:4192451 original size:16 final size:15
Alignment explanation
Indices: 4192424--4192454 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
4192414 AAAGATGTAT
4192424 GCAAATAATAAATAA
1 GCAAATAATAAATAA
4192439 GCAAATCAATAAATAA
1 GCAAAT-AATAAATAA
4192455 AGCGAGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.19
Consensus pattern (15 bp):
GCAAATAATAAATAA
Found at i:4193524 original size:18 final size:18
Alignment explanation
Indices: 4193501--4193538 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4193491 AATATGGCAG
*
4193501 TTCAATTGCAAGCTGTCC
1 TTCAATTGAAAGCTGTCC
*
4193519 TTCAATTGAAAGTTGTCC
1 TTCAATTGAAAGCTGTCC
4193537 TT
1 TT
4193539 ACTTGGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (18 bp):
TTCAATTGAAAGCTGTCC
Found at i:4194275 original size:16 final size:15
Alignment explanation
Indices: 4194244--4194294 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 15
4194234 ATTAATAAAT
*
4194244 AAAAAATAACAAA-A
1 AAAAAAAAACAAAGA
* *
4194258 AAAGAAAAACAAATA
1 AAAAAAAAACAAAGA
4194273 AAATAAAAAACAAAGA
1 AAA-AAAAAACAAAGA
4194289 AAAAAA
1 AAAAAA
4194295 TACCAAACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
14 11 0.35
15 7 0.23
16 13 0.42
ACGTcount: A:0.84, C:0.06, G:0.04, T:0.06
Consensus pattern (15 bp):
AAAAAAAAACAAAGA
Found at i:4197103 original size:20 final size:20
Alignment explanation
Indices: 4197056--4197108 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
4197046 TATTAGTACT
4197056 AATTAATTTA--AAATAAAA
1 AATTAATTTATTAAATAAAA
*
4197074 TA-T-ATATTATTAAATAAAA
1 AATTAAT-TTATTAAATAAAA
4197093 AATTAATTTATTAAAT
1 AATTAATTTATTAAAT
4197109 GTATATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
16 2 0.07
17 4 0.14
18 1 0.04
19 9 0.32
20 10 0.36
21 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTAATTTATTAAATAAAA
Found at i:4207638 original size:42 final size:42
Alignment explanation
Indices: 4207592--4207673 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 42
4207582 TAAAAATAAT
** *
4207592 TTTAAATGAGGATTAATACAAA-TTTTCACTAAAAGTAAAACC
1 TTTAAATGAAAATTAATA-AAAGCTTTCACTAAAAGTAAAACC
* * *
4207634 TTTAAGTGAAAATTAATAAAAGCTTTCATTAAATGTAAAA
1 TTTAAATGAAAATTAATAAAAGCTTTCACTAAAAGTAAAA
4207674 GATATAGTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
41 3 0.09
42 30 0.91
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.33
Consensus pattern (42 bp):
TTTAAATGAAAATTAATAAAAGCTTTCACTAAAAGTAAAACC
Found at i:4212971 original size:25 final size:26
Alignment explanation
Indices: 4212943--4212997 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
4212933 ACATTAAAGG
* *
4212943 TTGATATA-GAAAAAATTATTTCTTT
1 TTGATAAATGAAAAAATTATTTCATT
* *
4212968 TTGATAAATTAAAAACTTATTTCATT
1 TTGATAAATGAAAAAATTATTTCATT
4212994 TTGA
1 TTGA
4212998 ATAATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (26 bp):
TTGATAAATGAAAAAATTATTTCATT
Found at i:4213561 original size:24 final size:24
Alignment explanation
Indices: 4213521--4213625 Score: 76
Period size: 24 Copynumber: 4.5 Consensus size: 24
4213511 AAATTTAAGA
4213521 ATTTTGAAC-AATA-AATTTTTAT
1 ATTTTGAACAAATATAATTTTTAT
*
4213543 ATTTTCAACAAATATAATTTTT-T
1 ATTTTGAACAAATATAATTTTTAT
* * * * *
4213566 ATCTTAAAAAAAT-TATCTTTATTAA
1 ATTTTGAACAAATATA-ATTT-TTAT
*
4213591 ATTTTGAA-AAATATATTTTTTCAT
1 ATTTTGAACAAATATAATTTTT-AT
*
4213615 ATTTTTAACAA
1 ATTTTGAACAA
4213626 TAAATGCACT
Statistics
Matches: 64, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
22 10 0.16
23 20 0.31
24 24 0.38
25 10 0.16
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTTGAACAAATATAATTTTTAT
Found at i:4213563 original size:23 final size:22
Alignment explanation
Indices: 4213521--4213564 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
4213511 AAATTTAAGA
*
4213521 ATTTTGAACAATAAATTTTTAT
1 ATTTTCAACAATAAATTTTTAT
4213543 ATTTTCAACAAATATAATTTTT
1 ATTTTCAAC-AATA-AATTTTT
4213565 TATCTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTTTCAACAATAAATTTTTAT
Found at i:4213578 original size:23 final size:23
Alignment explanation
Indices: 4213530--4213578 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
4213520 AATTTTGAAC
* * *
4213530 AATAAATTTTTATATTTTCAACA
1 AATAAATTTTTATATCTTAAAAA
4213553 AATATAATTTTT-TATCTTAAAAA
1 AATA-AATTTTTATATCTTAAAAA
4213576 AAT
1 AAT
4213579 TATCTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (23 bp):
AATAAATTTTTATATCTTAAAAA
Found at i:4217757 original size:4 final size:4
Alignment explanation
Indices: 4217750--4217784 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
4217740 TTGATATATA
4217750 TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
4217785 TATTGTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:4219131 original size:22 final size:21
Alignment explanation
Indices: 4219106--4219153 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
4219096 ATTAAAGTTT
4219106 CATAATTAAAAAATCATAAAAA
1 CATAATTAAAAAAT-ATAAAAA
**
4219128 CATAATTTTAAAATATAAAAA
1 CATAATTAAAAAATATAAAAA
*
4219149 AATAA
1 CATAA
4219154 AAGTTTTAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (21 bp):
CATAATTAAAAAATATAAAAA
Found at i:4220361 original size:16 final size:17
Alignment explanation
Indices: 4220334--4220365 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4220324 ATATACTAAT
4220334 AAAATATATAAAATTTC
1 AAAATATATAAAATTTC
4220351 AAAAT-TATAAAATTT
1 AAAATATATAAAATTT
4220366 ATCTATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATATATAAAATTTC
Found at i:4224492 original size:20 final size:21
Alignment explanation
Indices: 4224455--4224498 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
4224445 ATGATCATTC
*
4224455 TAAACATGCATCAAATAAACA
1 TAAACATGCATCAAATAAAAA
*
4224476 TAAACATG-ATCACATAAAAA
1 TAAACATGCATCAAATAAAAA
4224496 TAA
1 TAA
4224499 CAAGTTATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.59, C:0.16, G:0.05, T:0.20
Consensus pattern (21 bp):
TAAACATGCATCAAATAAAAA
Found at i:4239308 original size:244 final size:244
Alignment explanation
Indices: 4238875--4239364 Score: 881
Period size: 244 Copynumber: 2.0 Consensus size: 244
4238865 ACTTGCAAGC
*
4238875 TCTATATAAAAAGTAGCAATCTTTAAAAAAAATTTATAAATTCAGAATTTTCTTAGTCAAATCAC
1 TCTATATAAAAAGTAGCAATCTTTAAAAAAAATTTATAAATTCACAATTTTCTTAGTCAAATCAC
*
4238940 CAACATTCAATTTCAAAAGCTCAAATTTCTTTTCGAAGTCATTCTTTGCCTTAGTCAAGAACTTA
66 CAACATTCAATTTCAAAAGCTCAAATTTCTTTTCGAAGTCATTCTTTGCCTTAGTCAAGAACTCA
* *
4239005 TTATGTAATTTAAACTTAGAAATCATTTTGCTATACTTCATGTTCATACTTTTAAATTCCATAGC
131 TTATGTAATTTAAACTTAGAAATCATTTTCCTATACTTCATGTTCATACTTTCAAATTCCATAGC
*
4239070 TAATTCACCGAAAGCATCTTGTAACTTATCAAATGTGTATGAATTTAAA
196 TAATTCACCAAAAGCATCTTGTAACTTATCAAATGTGTATGAATTTAAA
* * *
4239119 TCTATATAAAAGGTAGCAATCTTTAAAAAAAATTTATAAATTCTCATTTTTCTTAGTCAAATCAC
1 TCTATATAAAAAGTAGCAATCTTTAAAAAAAATTTATAAATTCACAATTTTCTTAGTCAAATCAC
* *
4239184 CAACATTCAATTTCAAAGGCTTAAATTTCTTTTCGAAGTCATTCTTTGCCTTAGTCAAGAACTCA
66 CAACATTCAATTTCAAAAGCTCAAATTTCTTTTCGAAGTCATTCTTTGCCTTAGTCAAGAACTCA
*
4239249 TTATGTAATTTAAACTTAGAAATGATTTTCCTATACTTCATGTTCATACTTTCAAATTCCATAGC
131 TTATGTAATTTAAACTTAGAAATCATTTTCCTATACTTCATGTTCATACTTTCAAATTCCATAGC
4239314 TAATTCACCAAAAGCATCTTGTAACTTATCAAATGTGTATGAATTTAAA
196 TAATTCACCAAAAGCATCTTGTAACTTATCAAATGTGTATGAATTTAAA
4239363 TC
1 TC
4239365 ATTAGGATTA
Statistics
Matches: 235, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
244 235 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (244 bp):
TCTATATAAAAAGTAGCAATCTTTAAAAAAAATTTATAAATTCACAATTTTCTTAGTCAAATCAC
CAACATTCAATTTCAAAAGCTCAAATTTCTTTTCGAAGTCATTCTTTGCCTTAGTCAAGAACTCA
TTATGTAATTTAAACTTAGAAATCATTTTCCTATACTTCATGTTCATACTTTCAAATTCCATAGC
TAATTCACCAAAAGCATCTTGTAACTTATCAAATGTGTATGAATTTAAA
Found at i:4239693 original size:103 final size:103
Alignment explanation
Indices: 4239579--4239770 Score: 321
Period size: 103 Copynumber: 1.9 Consensus size: 103
4239569 ACTTGGTCCT
* * * * * *
4239579 TTTTTTTTTCTACTTGATTCTTCTTTGATCATTTTTGTTAGCTGAAAGATTTGAATTAAACCAAG
1 TTTTCTTTTCTACTTGATTCTCCTTTGATCATTTCTGTTAGCTCAAAGACTTGAATTAAACCAAA
4239644 AGGGGAGGTGAATTGGTTGATTATAAGGAACTTGATCA
66 AGGGGAGGTGAATTGGTTGATTATAAGGAACTTGATCA
*
4239682 TTTTCTTTTCTACTTGATTCTCCTTTGATCATTTCTGTTAGCTCAAAGACTTGAATTAAACTAAA
1 TTTTCTTTTCTACTTGATTCTCCTTTGATCATTTCTGTTAGCTCAAAGACTTGAATTAAACCAAA
4239747 AGGGGAGGTGAATTGGTTGATTAT
66 AGGGGAGGTGAATTGGTTGATTAT
4239771 GAATTTTTGC
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 82 1.00
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (103 bp):
TTTTCTTTTCTACTTGATTCTCCTTTGATCATTTCTGTTAGCTCAAAGACTTGAATTAAACCAAA
AGGGGAGGTGAATTGGTTGATTATAAGGAACTTGATCA
Found at i:4240559 original size:18 final size:17
Alignment explanation
Indices: 4240538--4240583 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
4240528 ATTATGAAGG
4240538 ATATCAAGAGAGAAATAA
1 ATAT-AAGAGAGAAATAA
4240556 ATATAAGAGGAGAGAAATAA
1 ATAT-A-A-GAGAGAAATAA
4240576 ATATAAGA
1 ATATAAGA
4240584 TTAGTGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.08
18 6 0.24
19 2 0.08
20 15 0.60
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.17
Consensus pattern (17 bp):
ATATAAGAGAGAAATAA
Found at i:4240570 original size:20 final size:20
Alignment explanation
Indices: 4240545--4240583 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
4240535 AGGATATCAA
4240545 GAGAGAAATAAATATAAGAG
1 GAGAGAAATAAATATAAGAG
4240565 GAGAGAAATAAATATAAGA
1 GAGAGAAATAAATATAAGA
4240584 TTAGTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (20 bp):
GAGAGAAATAAATATAAGAG
Found at i:4248966 original size:19 final size:20
Alignment explanation
Indices: 4248942--4248982 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
4248932 TTTTTGCATG
*
4248942 ATTAAAAATTAGAAAA-AAA
1 ATTAAAAAATAGAAAACAAA
*
4248961 ATTAAAAAATATAAAACAAA
1 ATTAAAAAATAGAAAACAAA
4248981 AT
1 AT
4248983 AATTTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (20 bp):
ATTAAAAAATAGAAAACAAA
Found at i:4258741 original size:499 final size:499
Alignment explanation
Indices: 4257796--4258793 Score: 1717
Period size: 499 Copynumber: 2.0 Consensus size: 499
4257786 ATACAAATGG
* * * *
4257796 ACATATGATGGTAAGATAAATCATAAAAGCTGAGTACAATTGGTTGACAATTGAGAATAACTGCA
1 ACATATAATGGTAAAATAAATCATAAAAGCTGAGTAAAATTGGTTGACAATTGAGAATAACTACA
* * *
4257861 TTAATTATGCTCGAAAATGTCATAAGTGGCAGATTTATACTGATAAGATCTATGCTCTACCAACT
66 TTAATTATGCTCGAAAATGTCATAAGTGCCAGATTTATACTGATAAGATCCATGCTCCACCAACT
* *
4257926 ACTTTACAGGTTTTAGCACTACCCTTGCCATTCTTTATGTGGGGCATTAATGTCATTGGTCCTAT
131 ACTTTACAAGTTTTAGCACTACCCTAGCCATTCTTTATGTGGGGCATTAATGTCATTGGTCCTAT
* *
4257991 CACTCCAAAGGTTTCTAAAGAGCATAAGTTCATTTTCATGATGATAGATTATTTCACGAAATGGG
196 CACTCCAAAAGTTTCTAAAGAGCACAAGTTCATTTTCATGATGATAGATTATTTCACGAAATGGG
* *
4258056 TGAAAATAACTTCATTTGGAAGTGTGATACAATTTATGGTCTGTAAGTTCATAAAAAGAGAAATC
261 TGAAAACAACTTCATTTGGAAGTGTGATACAATTTATGGTCTGCAAGTTCATAAAAAGAGAAATC
** *
4258121 ATTTATAAATATGGACTTCCAGAAATAATTACTTCAGATAATGCCAAGAATCTGAATAGTAAGAT
326 ATTTATAAATATAAACTTCCAGAAAGAATTACTTCAGATAATGCCAAGAATCTGAATAGTAAGAT
* * *
4258186 GATGTAGGAAATATGTGCTTAGTACAAGATCGAGCATCATAATTTAGCACCATACCATTCGAAAA
391 GATGTAAGAAATATGTGCTTAGTACAAGATCAAGCATCATAATTCAGCACCATACCATTCGAAAA
* *
4258251 TGAATAGGGTAATTGAGGTAACAAAAAAGAATATAAAAAGAACT
456 TGAATAGGGTAATTGAGGCAACAAAAAAAAATATAAAAAGAACT
*
4258295 ACATATAATGGTAAAATAAATCATAAAAGCTGAGTAAAATTGGTTGACAATTGAGAGTAACTACA
1 ACATATAATGGTAAAATAAATCATAAAAGCTGAGTAAAATTGGTTGACAATTGAGAATAACTACA
*
4258360 TTAATTATGCTCGAAAATGTCATAAGTGCCAGATTTATGCTGATAAGATCCATGCTCCACCAACT
66 TTAATTATGCTCGAAAATGTCATAAGTGCCAGATTTATACTGATAAGATCCATGCTCCACCAACT
* *
4258425 ACTTTACAAGTTTTGGCACTACCCTAGCCATTCTTTATGTGGGGCATTAGTGTCATTGGTCCTAT
131 ACTTTACAAGTTTTAGCACTACCCTAGCCATTCTTTATGTGGGGCATTAATGTCATTGGTCCTAT
4258490 CACTCCAAAAGTTTCTAAAGAGCACAAGTTCATTTTCATGATGATAGATTATTTCACGAAATGGG
196 CACTCCAAAAGTTTCTAAAGAGCACAAGTTCATTTTCATGATGATAGATTATTTCACGAAATGGG
*
4258555 TGAAAACAGCTTCATTTGGAAGTGTGATACAATTTATGGTCTGCAAGTTCATAAAAAGAGAAATC
261 TGAAAACAACTTCATTTGGAAGTGTGATACAATTTATGGTCTGCAAGTTCATAAAAAGAGAAATC
* * *
4258620 ATTTATAGATATAAACTTCCAGAAAGAATTACTTCAGATCATGTCAAGAATCTGAATAGTAAGAT
326 ATTTATAAATATAAACTTCCAGAAAGAATTACTTCAGATAATGCCAAGAATCTGAATAGTAAGAT
*
4258685 GATGTAAGAAATATGTGCTTAGTACAAGATCAAGCATCATAATTCGGCACCATACCATTCGAAAA
391 GATGTAAGAAATATGTGCTTAGTACAAGATCAAGCATCATAATTCAGCACCATACCATTCGAAAA
*
4258750 TGAATAGGGTAATTGAGGCGACAAAAAAAAATATAAAAAGAACT
456 TGAATAGGGTAATTGAGGCAACAAAAAAAAATATAAAAAGAACT
4258794 TTTAAGAAGA
Statistics
Matches: 468, Mismatches: 31, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
499 468 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (499 bp):
ACATATAATGGTAAAATAAATCATAAAAGCTGAGTAAAATTGGTTGACAATTGAGAATAACTACA
TTAATTATGCTCGAAAATGTCATAAGTGCCAGATTTATACTGATAAGATCCATGCTCCACCAACT
ACTTTACAAGTTTTAGCACTACCCTAGCCATTCTTTATGTGGGGCATTAATGTCATTGGTCCTAT
CACTCCAAAAGTTTCTAAAGAGCACAAGTTCATTTTCATGATGATAGATTATTTCACGAAATGGG
TGAAAACAACTTCATTTGGAAGTGTGATACAATTTATGGTCTGCAAGTTCATAAAAAGAGAAATC
ATTTATAAATATAAACTTCCAGAAAGAATTACTTCAGATAATGCCAAGAATCTGAATAGTAAGAT
GATGTAAGAAATATGTGCTTAGTACAAGATCAAGCATCATAATTCAGCACCATACCATTCGAAAA
TGAATAGGGTAATTGAGGCAACAAAAAAAAATATAAAAAGAACT
Found at i:4260068 original size:33 final size:33
Alignment explanation
Indices: 4260026--4260096 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
4260016 AATTAAAATT
* * *
4260026 TGCATAGCATGC-TTTGTATTTCTGAATGTCTAG
1 TGCATAGCATACATTT-CATTTCAGAATGTCTAG
*
4260059 TGCATAGCATACATTTCATTTGAGAATGTCTAG
1 TGCATAGCATACATTTCATTTCAGAATGTCTAG
4260092 TGCAT
1 TGCAT
4260097 GAATCTAGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 30 0.91
34 3 0.09
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.39
Consensus pattern (33 bp):
TGCATAGCATACATTTCATTTCAGAATGTCTAG
Found at i:4260473 original size:43 final size:43
Alignment explanation
Indices: 4260333--4260701 Score: 370
Period size: 43 Copynumber: 8.6 Consensus size: 43
4260323 TGTCGATGAA
* * * * * *
4260333 CCTTATTTACTTTTCAAAGTTGTTGAACCTCTGTTTAAAAGAA
1 CCTTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
* * * * * *
4260376 CCTTGTTTATTTTTTAAA-TCCG-TGAGTCTCTGTTTAGAGAAG
1 CCTTATTTATTTTTCAAAGT-TGTTGAGCCTCTATTTAGAGGAG
* *
4260418 CCTTATTCACTTTTCAAAGTTGTTGAGCCTCTATTTAGA-GATG
1 CCTTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGA-G
* * * *
4260461 CCTTATTTACTTTTCAAAGTTATTGAGCCTCTATTTAGAGAAA
1 CCTTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
* ** *
4260504 CTTTATTTATTTTTCAAAG-TCATGAGCCTCTACTTAGAGGAG
1 CCTTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
* *
4260546 -CTTATTTACTTTTTAAAAGTCGTTGAGCCTCTATTTAGAGGAG
1 CCTTATTTA-TTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
** * *
4260589 CCTTATTTATTTTTCAAAAGTCATTGAACCTCTGTTTAGAGGAG
1 CCTTATTTATTTTTC-AAAGTTGTTGAGCCTCTATTTAGAGGAG
* *
4260633 CCATATTTATTTTTCAAAAGTTGTTAAGCCTCTATTTAGAGGAG
1 CCTTATTTATTTTTC-AAAGTTGTTGAGCCTCTATTTAGAGGAG
*
4260677 CTTTATTTATTTTTCAAAGTCTGTT
1 CCTTATTTATTTTTCAAAGT-TGTT
4260702 AGCTTAAAGA
Statistics
Matches: 269, Mismatches: 47, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
41 7 0.03
42 58 0.22
43 115 0.43
44 89 0.33
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (43 bp):
CCTTATTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
Found at i:4260565 original size:128 final size:128
Alignment explanation
Indices: 4260333--4260701 Score: 415
Period size: 128 Copynumber: 2.9 Consensus size: 128
4260323 TGTCGATGAA
* * * *
4260333 CCTTATTTACTTTTCAAAGTTGTTGAACCTCTGTTTA-AAAGAACCTTGTTTATTTTTTAAA-TC
1 CCTTATTTACTTTTCAAAGTTATTGAACCTCTGTTTAGAGA-AACCTTATTTATTTTTCAAAGT-
* * * * *
4260396 CGTGAGTCTCTGTTTAGAGAAGCCTTATTCAC-TTTTCAAAGTTGTTGAGCCTCTATTTAGA-GA
64 CATGAGCCTCTATTTAGAGGAG-CTTATTTACTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGA
4260459 TG
128 -G
* * *
4260461 CCTTATTTACTTTTCAAAGTTATTGAGCCTCTATTTAGAGAAACTTTATTTATTTTTCAAAGTCA
1 CCTTATTTACTTTTCAAAGTTATTGAACCTCTGTTTAGAGAAACCTTATTTATTTTTCAAAGTCA
* * *
4260526 TGAGCCTCTACTTAGAGGAGCTTATTTACTTTTTAAAAGTCGTTGAGCCTCTATTTAGAGGAG
66 TGAGCCTCTATTTAGAGGAGCTTATTTACTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
* * * * *
4260589 CCTTATTTATTTTTCAAAAGTCATTGAACCTCTGTTTAGAGGAGCCATATTTATTTTTCAAAAGT
1 CCTTATTTACTTTTC-AAAGTTATTGAACCTCTGTTTAGAGAAACCTTATTTATTTTTC-AAAG-
** *
4260654 TGTTAAGCCTCTATTTAGAGGAGCTTTATTTA-TTTTTCAAAGTCTGTT
63 TCATGAGCCTCTATTTAGAGGAGC-TTATTTACTTTTTCAAAGT-TGTT
4260702 AGCTTAAAGA
Statistics
Matches: 203, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
127 8 0.04
128 110 0.54
129 41 0.20
130 4 0.02
131 30 0.15
132 10 0.05
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (128 bp):
CCTTATTTACTTTTCAAAGTTATTGAACCTCTGTTTAGAGAAACCTTATTTATTTTTCAAAGTCA
TGAGCCTCTATTTAGAGGAGCTTATTTACTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAG
Found at i:4279339 original size:15 final size:15
Alignment explanation
Indices: 4279319--4279354 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
4279309 AAAATCCTAA
**
4279319 AATAGTCTTTTTTTT
1 AATAGTCTTTTACTT
4279334 AATAGTCTTTTACTT
1 AATAGTCTTTTACTT
4279349 AATAGT
1 AATAGT
4279355 TCATTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (15 bp):
AATAGTCTTTTACTT
Found at i:4280711 original size:33 final size:34
Alignment explanation
Indices: 4280661--4280735 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
4280651 CACATCAATC
* *
4280661 CTTTTTTTTTTCTTTC-TTCCCTTTCTTTCTCTTT
1 CTTTCTTTTTTCTTTCTTTCCCTTTC-CTCTCTTT
4280695 CTTTCTTTTTTC-TTCTTTCCCTTTCCTCTCTTT
1 CTTTCTTTTTTCTTTCTTTCCCTTTCCTCTCTTT
*
4280728 CTTCCTTT
1 CTTTCTTT
4280736 GCCAACATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 17 0.46
34 20 0.54
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (34 bp):
CTTTCTTTTTTCTTTCTTTCCCTTTCCTCTCTTT
Found at i:4280939 original size:18 final size:18
Alignment explanation
Indices: 4280895--4280942 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
4280885 CCCCTTTTGA
*
4280895 TTTTCTTTCTTCCTTTCT
1 TTTTCTTTCTTTCTTTCT
* *
4280913 CTTTCTTTCTTTCTTTTT
1 TTTTCTTTCTTTCTTTCT
*
4280931 TTTTATTTCTTT
1 TTTTCTTTCTTT
4280943 TTGACTTGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTCTTTCTTTCTTTCT
Found at i:4283046 original size:19 final size:19
Alignment explanation
Indices: 4283022--4283060 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4283012 ATGAAAAGTT
4283022 ATAGAAATCAAACTTAGAA
1 ATAGAAATCAAACTTAGAA
*
4283041 ATAGAAATCATACTTAGAA
1 ATAGAAATCAAACTTAGAA
4283060 A
1 A
4283061 AATTTATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.23
Consensus pattern (19 bp):
ATAGAAATCAAACTTAGAA
Found at i:4284308 original size:30 final size:30
Alignment explanation
Indices: 4284220--4284308 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
4284210 ATGTATTATG
*
4284220 TTAAGGATTTATTTAGGTAG-AAATTAAAAA
1 TTAAGGATTTATTTAGGT-GCAAATTAAAGA
* * * * *
4284250 TTAAGGGTTTA-TTGGGATACACACTAAAGA
1 TTAAGGATTTATTTAGG-TGCAAATTAAAGA
*
4284280 TTAAGGATTTATTTAAGTGCAAATTAAAG
1 TTAAGGATTTATTTAGGTGCAAATTAAAG
4284309 GTTGAAAGCT
Statistics
Matches: 44, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
29 4 0.09
30 37 0.84
31 3 0.07
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (30 bp):
TTAAGGATTTATTTAGGTGCAAATTAAAGA
Found at i:4286607 original size:15 final size:15
Alignment explanation
Indices: 4286559--4286607 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
4286549 TTGCAAATAC
*
4286559 ATTTTTAT-TATGTA
1 ATTTTTATATATTTA
* * *
4286573 ATTTATAAATAATTA
1 ATTTTTATATATTTA
4286588 ATTTTTATATATTTA
1 ATTTTTATATATTTA
4286603 ATTTT
1 ATTTT
4286608 CATAATTGAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (15 bp):
ATTTTTATATATTTA
Found at i:4286731 original size:28 final size:26
Alignment explanation
Indices: 4286671--4286734 Score: 67
Period size: 28 Copynumber: 2.4 Consensus size: 26
4286661 AAAAAATCCT
*
4286671 TAAAAAATTTATTTAATATAATATAA
1 TAAAAAATTTATTTAAAATAATATAA
**
4286697 TTTAAAATTATATTTTAAAATTAAT-TAA
1 TAAAAAATT-TA-TTTAAAA-TAATATAA
4286725 TAAAAAATTT
1 TAAAAAATTT
4286735 TATAAATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
26 7 0.23
27 3 0.10
28 16 0.53
29 4 0.13
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
TAAAAAATTTATTTAAAATAATATAA
Found at i:4288474 original size:239 final size:237
Alignment explanation
Indices: 4288089--4288544 Score: 655
Period size: 239 Copynumber: 1.9 Consensus size: 237
4288079 CTCTCTAGTT
* * *
4288089 TTTACCAAAAATTATAATGAAATTGTTTAAGCAGTTTGATTCTTTGTATAATGTTTGCAATTAAA
1 TTTACCAAAAATTATAACGAAATTGTTTAAGCAATTTGATTCTTTATATAATGTTTGCAATTAAA
* *
4288154 ATGCTAAGCTTATGAGATTTATAAAGTAGACTTACAAACTTTTACATTGAATTTTATATAGCTTC
66 ATGCCAAGCTTATGAGATTTATAAAGTAGACTTACAAACTTTTACATTGAATTTTATACAGCTTC
* *
4288219 ATTTCAACCACTTCAAACAAAGACTTTTATT-TGCTTCTATAAGTTGATAAAATCAT-GTATTAA
131 ATTCCAACAACTTCAAACAAAGACTTTTATTAT--TT-TATAAGTTGATAAAAT-ATAGTATTAA
* *
4288282 TTGTTGTTGCAAATTATGATGCTTTTAGTCGATTATCTATTCAGTG
192 TTATTGTTGCAAATGATGATGCTTTTAGTCGATTATCTATTCAGTG
* * *
4288328 TTTACCAAAAATTATAACGAAATTGTTTAAGCAATTTGATTCTTTATATAATGTTTGTAGTTAAG
1 TTTACCAAAAATTATAACGAAATTGTTTAAGCAATTTGATTCTTTATATAATGTTTGCAATTAAA
* * * *
4288393 TTGCCCAGCTTATGAGATTTATAAAGTAGAGTTACAAACTTTTACATTGAATTTTATGCAGCTTC
66 ATGCCAAGCTTATGAGATTTATAAAGTAGACTTACAAACTTTTACATTGAATTTTATACAGCTTC
* * * * * *
4288458 CTTCCAACAACTTCAAACCAAGGCTTTTATTATTTTGTAAGTTGATGAAATTTAGTATTAATTAT
131 ATTCCAACAACTTCAAACAAAGACTTTTATTATTTTATAAGTTGATAAAATATAGTATTAATTAT
*
4288523 TGTTGCAAATGATGATTCTTTT
196 TGTTGCAAATGATGATGCTTTT
4288545 CCTATGATAA
Statistics
Matches: 192, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
236 1 0.01
237 44 0.23
238 2 0.01
239 144 0.75
240 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (237 bp):
TTTACCAAAAATTATAACGAAATTGTTTAAGCAATTTGATTCTTTATATAATGTTTGCAATTAAA
ATGCCAAGCTTATGAGATTTATAAAGTAGACTTACAAACTTTTACATTGAATTTTATACAGCTTC
ATTCCAACAACTTCAAACAAAGACTTTTATTATTTTATAAGTTGATAAAATATAGTATTAATTAT
TGTTGCAAATGATGATGCTTTTAGTCGATTATCTATTCAGTG
Found at i:4293675 original size:54 final size:53
Alignment explanation
Indices: 4293612--4293719 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 53
4293602 ATTTTTCCTT
**
4293612 TGTAGACAATTATTTACTATTTTCTTATATTTTCATTATTTTAAAATAATTCCC
1 TGTAGACAATTATTTACTATTTTCTTATATTCCCATTA-TTTAAAATAATTCCC
* *
4293666 TGTAGACAATTATTTACTATTTTGTTATATTCCCATTATTTACAATAATTCCC
1 TGTAGACAATTATTTACTATTTTCTTATATTCCCATTATTTAAAATAATTCCC
4293719 T
1 T
4293720 ATGACTATAC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 15 0.30
54 35 0.70
ACGTcount: A:0.31, C:0.15, G:0.05, T:0.50
Consensus pattern (53 bp):
TGTAGACAATTATTTACTATTTTCTTATATTCCCATTATTTAAAATAATTCCC
Found at i:4302673 original size:3 final size:3
Alignment explanation
Indices: 4302667--4302707 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
4302657 GTTGTTGTTG
4302667 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4302708 GCTTTACATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4305220 original size:17 final size:15
Alignment explanation
Indices: 4305200--4305246 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
4305190 TTTTAGCATA
4305200 TTGTTAGTTATTATATT
1 TTGTT-GTTA-TATATT
4305217 TTGTTGTTATATATT
1 TTGTTGTTATATATT
*
4305232 AT-TTGTTA-ATATT
1 TTGTTGTTATATATT
4305245 TT
1 TT
4305247 ATTATTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 6 0.21
14 6 0.21
15 7 0.25
16 4 0.14
17 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
TTGTTGTTATATATT
Found at i:4305768 original size:61 final size:62
Alignment explanation
Indices: 4305660--4305780 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 62
4305650 TGAATTTTAG
* * * *
4305660 TTTACTAAGTTTTATATATTTCATAATTCCATCATTTCTTGTGAGAATTTGTGAG-TTTTGA
1 TTTACTAAGTTTTATATATTTCATAATTCCATCATTTATGGTAAGAATTTATGAGATTTTGA
* * * * *
4305721 TTTACTATGTTTTATGTATTTTATAATTCTATTATTTATGGTAAGAATTTATGAGATTTT
1 TTTACTAAGTTTTATATATTTCATAATTCCATCATTTATGGTAAGAATTTATGAGATTTT
4305781 TATTAAATAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
61 46 0.92
62 4 0.08
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (62 bp):
TTTACTAAGTTTTATATATTTCATAATTCCATCATTTATGGTAAGAATTTATGAGATTTTGA
Found at i:4307216 original size:15 final size:15
Alignment explanation
Indices: 4307176--4307218 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4307166 TTATGTATGT
*
4307176 TATAATATAATAATA
1 TATAATATAATGATA
4307191 TAT-ATGATAATGATA
1 TATAAT-ATAATGATA
*
4307206 TATAATTTAATGA
1 TATAATATAATGA
4307219 CTTTAAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 2 0.08
15 20 0.83
16 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (15 bp):
TATAATATAATGATA
Found at i:4312622 original size:34 final size:33
Alignment explanation
Indices: 4312483--4312636 Score: 89
Period size: 34 Copynumber: 4.5 Consensus size: 33
4312473 TGTATTTTTT
*
4312483 AAAATAGATTTTCAAGAATACAATGTAATTCTCG
1 AAAATAGATTTTCAA-AATACAATGTAATTCTTG
* * * *
4312517 AAAATATATTTCTGAAAATGCAGTGTAACTT-TTG
1 AAAATAGATTT-TCAAAATACAATGTAA-TTCTTG
* * ** *
4312551 AAAATCA-ATTTCCGAAAATATAACATAATTCTAG
1 AAAAT-AGATTTTC-AAAATACAATGTAATTCTTG
* * *
4312585 GAAATAGATTTTCAAGAATATAGTGTAATTCTTG
1 AAAATAGATTTTCAA-AATACAATGTAATTCTTG
*
4312619 GAAAT-GAATTTTCGAAAA
1 AAAATAG-ATTTTC-AAAA
4312637 CACGATGAGA
Statistics
Matches: 92, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
33 6 0.07
34 78 0.85
35 8 0.09
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.34
Consensus pattern (33 bp):
AAAATAGATTTTCAAAATACAATGTAATTCTTG
Found at i:4315693 original size:17 final size:18
Alignment explanation
Indices: 4315670--4315709 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
4315660 TTTTATAGTA
4315670 ATGTTTATTG-TTTATATT
1 ATGTTTA-TGCTTTATATT
4315688 -TGTTTATGCTTTATATT
1 ATGTTTATGCTTTATATT
4315705 ATGTT
1 ATGTT
4315710 ATGAACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.10
17 14 0.70
18 4 0.20
ACGTcount: A:0.20, C:0.03, G:0.12, T:0.65
Consensus pattern (18 bp):
ATGTTTATGCTTTATATT
Found at i:4317358 original size:50 final size:50
Alignment explanation
Indices: 4317274--4317380 Score: 153
Period size: 50 Copynumber: 2.1 Consensus size: 50
4317264 TAACAATAAC
* * * *
4317274 AATAACAACAAATATATTAATACAACATCTCCAATATCAAGATCATGCAT
1 AATATCAACAAATATATTAATACAACATCACCAATATCAACATCATACAT
*
4317324 AATATCAACAAA-ATTATTAATACAATATCACCAATATCAACATCATACAT
1 AATATCAACAAATA-TATTAATACAACATCACCAATATCAACATCATACAT
4317374 AATATCA
1 AATATCA
4317381 TCAGCAACAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 1 0.02
50 50 0.98
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (50 bp):
AATATCAACAAATATATTAATACAACATCACCAATATCAACATCATACAT
Found at i:4319965 original size:16 final size:16
Alignment explanation
Indices: 4319925--4319957 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
4319915 TATAATTATT
4319925 TTAAATATTTAATTAAA
1 TTAAAT-TTTAATTAAA
4319942 TTAAATTTTAA-TAAA
1 TTAAATTTTAATTAAA
4319957 T
1 T
4319958 ATATATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 5 0.31
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAATTTTAATTAAA
Found at i:4320808 original size:8 final size:9
Alignment explanation
Indices: 4320786--4320815 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
4320776 TTTCTATGAA
4320786 TAAAAAGAT
1 TAAAAAGAT
4320795 TAAAAAGAT
1 TAAAAAGAT
4320804 TAAAAAGAT
1 TAAAAAGAT
4320813 TAA
1 TAA
4320816 TTTTTATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (9 bp):
TAAAAAGAT
Found at i:4321703 original size:25 final size:26
Alignment explanation
Indices: 4321675--4321748 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 26
4321665 AAAAAGAATT
* *
4321675 AAGAAAATAGAGAT-AG-AAGATAAAA
1 AAGAAAAAAG-GATAAGAAAGAAAAAA
4321700 AAGAAAAAAGGATAAGAAAGAAAAAA
1 AAGAAAAAAGGATAAGAAAGAAAAAA
*
4321726 AAGAAAAAA--ATGAGAAAGAAAAA
1 AAGAAAAAAGGATAAGAAAGAAAAA
4321749 GAAATGGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
24 16 0.36
25 11 0.25
26 17 0.39
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (26 bp):
AAGAAAAAAGGATAAGAAAGAAAAAA
Found at i:4321719 original size:17 final size:17
Alignment explanation
Indices: 4321693--4321725 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4321683 AGAGATAGAA
4321693 GATAAAAAAGAAAAAAG
1 GATAAAAAAGAAAAAAG
*
4321710 GATAAGAAAGAAAAAA
1 GATAAAAAAGAAAAAA
4321726 AAGAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (17 bp):
GATAAAAAAGAAAAAAG
Found at i:4325448 original size:20 final size:21
Alignment explanation
Indices: 4325419--4325461 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
4325409 TTATTCTTTA
*
4325419 TTCTTTTTTA-TTTTCTTGTT
1 TTCTTATTTACTTTTCTTGTT
*
4325439 TTCTTATTTACTTTTTTTGTT
1 TTCTTATTTACTTTTCTTGTT
4325460 TT
1 TT
4325462 TTCAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.07, C:0.09, G:0.05, T:0.79
Consensus pattern (21 bp):
TTCTTATTTACTTTTCTTGTT
Found at i:4326403 original size:21 final size:21
Alignment explanation
Indices: 4326379--4326431 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
4326369 ACCTGAACCA
4326379 ATCGATCCCCTAAAGGAAGGG-
1 ATCGATCCCCTAAAGG-AGGGT
*
4326400 ATCGATCCCTTAAAGGAGGGT
1 ATCGATCCCCTAAAGGAGGGT
4326421 ATCGATCCCCT
1 ATCGATCCCCT
4326432 GAGTCCCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (21 bp):
ATCGATCCCCTAAAGGAGGGT
Found at i:4333499 original size:15 final size:15
Alignment explanation
Indices: 4333440--4333490 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
4333430 CATTATGATA
*
4333440 TGGCTTGTGACATTG
1 TGGCTTATGACATTG
*
4333455 TGGCTTATGATATTG
1 TGGCTTATGACATTG
*
4333470 TGGCCTATGACATTG
1 TGGCTTATGACATTG
4333485 TGGCTT
1 TGGCTT
4333491 GTGATATTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.16, C:0.14, G:0.29, T:0.41
Consensus pattern (15 bp):
TGGCTTATGACATTG
Found at i:4335552 original size:23 final size:23
Alignment explanation
Indices: 4335503--4335552 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
4335493 TTCTCTTTTT
* * *
4335503 TTTTTTTTATTTTTGTTTATTTG
1 TTTTTTTTATCTTTGTTCATTTA
4335526 TTTTTTTTATCTTT-TTCATTATA
1 TTTTTTTTATCTTTGTTCATT-TA
4335549 TTTT
1 TTTT
4335553 ATTAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.80
Consensus pattern (23 bp):
TTTTTTTTATCTTTGTTCATTTA
Found at i:4335665 original size:16 final size:15
Alignment explanation
Indices: 4335641--4335692 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
4335631 TAATAAGCTC
*
4335641 TTTTT-TTTTTCTTTT
1 TTTTTATTTTTC-TAT
4335656 TTTTTATTTTTCTAT
1 TTTTTATTTTTCTAT
* *
4335671 ATTTTATTTTTATAT
1 TTTTTATTTTTCTAT
4335686 CTTTTTA
1 -TTTTTA
4335693 ATTAAAGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 20 0.65
16 11 0.35
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTATTTTTCTAT
Found at i:4338742 original size:16 final size:16
Alignment explanation
Indices: 4338721--4338751 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4338711 TTATGTAGCT
*
4338721 ACTAGTCTTGAAGTTC
1 ACTAGTATTGAAGTTC
4338737 ACTAGTATTGAAGTT
1 ACTAGTATTGAAGTT
4338752 TTCATAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (16 bp):
ACTAGTATTGAAGTTC
Found at i:4340395 original size:3 final size:3
Alignment explanation
Indices: 4340389--4340418 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
4340379 ATAATAATTA
*
4340389 ATT ATT ATG ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4340419 GCTGCTGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:4340706 original size:3 final size:3
Alignment explanation
Indices: 4340698--4340731 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
4340688 AACATAATGA
4340698 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4340732 ATCAATGTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:4340828 original size:21 final size:22
Alignment explanation
Indices: 4340802--4340843 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
4340792 CACAAGACTA
*
4340802 TTTATC-TTCAAATTCAATTGT
1 TTTATCGTTCAAAGTCAATTGT
4340823 TTTATCTGTTCAAAGTCAATT
1 TTTATC-GTTCAAAGTCAATT
4340844 TCAAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
23 12 0.67
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTATCGTTCAAAGTCAATTGT
Found at i:4341337 original size:13 final size:13
Alignment explanation
Indices: 4341319--4341375 Score: 62
Period size: 13 Copynumber: 4.4 Consensus size: 13
4341309 ACATTTTAAC
4341319 AAAAATTAAAAAT
1 AAAAATTAAAAAT
* **
4341332 AAAAATTATTATTT
1 AAAAATTA-AAAAT
4341346 AAAAA-TAAAAAT
1 AAAAATTAAAAAT
*
4341358 AAAAATAAAAAAT
1 AAAAATTAAAAAT
4341371 AAAAA
1 AAAAA
4341376 AATTTCTCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
12 7 0.20
13 21 0.60
14 7 0.20
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAAATTAAAAAT
Found at i:4341376 original size:7 final size:6
Alignment explanation
Indices: 4341345--4341375 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
4341335 AATTATTATT
4341345 TAAAAA TAAAAA TAAAAA TAAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA T-AAAAA TAAAAA
4341376 AATTTCTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
TAAAAA
Found at i:4342309 original size:19 final size:19
Alignment explanation
Indices: 4342282--4342319 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4342272 ACAACTACTC
*
4342282 AAAATTTTTATGTGTATAA
1 AAAAATTTTATGTGTATAA
4342301 AAAAATTTTATGTGTATAA
1 AAAAATTTTATGTGTATAA
4342320 TTTATGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (19 bp):
AAAAATTTTATGTGTATAA
Found at i:4342613 original size:21 final size:21
Alignment explanation
Indices: 4342588--4342638 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
4342578 TGAAATATGG
*
4342588 ATTTTATTTTTTTAACAAATA
1 ATTTTATTTGTTTAACAAATA
* *
4342609 ATTTTAGTTGTTTATCAAATA
1 ATTTTATTTGTTTAACAAATA
4342630 ATTTTATTT
1 ATTTTATTT
4342639 ACAATTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTATTTGTTTAACAAATA
Found at i:4344755 original size:2 final size:2
Alignment explanation
Indices: 4344748--4344776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4344738 GTTCAATCAA
4344748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4344777 CACACACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.