Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 3 of 106
Found at i:276432 original size:18 final size:17
Alignment explanation
Indices: 276391--276431 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
276381 TTAAATATAT
276391 AAAAAAATAAAAAATGA
1 AAAAAAATAAAAAATGA
* * *
276408 GAAAAAATTAAAATTGA
1 AAAAAAATAAAAAATGA
276425 AAAAAAA
1 AAAAAAA
276432 AACATATCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (17 bp):
AAAAAAATAAAAAATGA
Found at i:276989 original size:16 final size:17
Alignment explanation
Indices: 276970--277002 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
276960 TTCTTGAAAT
276970 AAAAACAAAA-AAAAAA
1 AAAAACAAAAGAAAAAA
276986 AAAAACAAAAGAAAAAA
1 AAAAACAAAAGAAAAAA
277003 GGTAGGACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.91, C:0.06, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAGAAAAAA
Found at i:277113 original size:14 final size:14
Alignment explanation
Indices: 277085--277125 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
277075 TAGAAAAGTC
277085 AAAAAAC-AAGAAA
1 AAAAAACAAAGAAA
277098 AAAAAACAAAGCAAA
1 AAAAAACAAAG-AAA
277113 AAAAAA-AAAGAAA
1 AAAAAACAAAGAAA
277126 CAATATGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 10 0.38
14 7 0.27
15 9 0.35
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAACAAAGAAA
Found at i:277372 original size:13 final size:14
Alignment explanation
Indices: 277342--277375 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
277332 AGTTTTAATG
*
277342 TTAAAAAATATGTT
1 TTAAAAAATATGTC
277356 TTAAAAAATATG-C
1 TTAAAAAATATGTC
277369 TTAAAAA
1 TTAAAAA
277376 TTTTAAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (14 bp):
TTAAAAAATATGTC
Found at i:277906 original size:6 final size:6
Alignment explanation
Indices: 277895--277924 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
277885 ATTATTCATG
*
277895 CTCGAA CTCGAA CTCGAA CTCGGA CTCGAA
1 CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA
277925 ATATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.30, C:0.33, G:0.20, T:0.17
Consensus pattern (6 bp):
CTCGAA
Found at i:281982 original size:18 final size:18
Alignment explanation
Indices: 281959--281993 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
281949 AATGGAAGCC
* *
281959 TAAAAAGCATAAATTTGA
1 TAAAAAGAAAAAATTTGA
281977 TAAAAAGAAAAAATTTG
1 TAAAAAGAAAAAATTTG
281994 TTAGAAGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.11, T:0.26
Consensus pattern (18 bp):
TAAAAAGAAAAAATTTGA
Found at i:285577 original size:13 final size:13
Alignment explanation
Indices: 285559--285591 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
285549 ACATTTAAAA
*
285559 TTTTTAAGCATAT
1 TTTTTAAACATAT
285572 TTTTTAAACATAT
1 TTTTTAAACATAT
285585 TTTTTAA
1 TTTTTAA
285592 CTTAAAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (13 bp):
TTTTTAAACATAT
Found at i:285835 original size:15 final size:14
Alignment explanation
Indices: 285815--285849 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
285805 ATTGTTTCTT
285815 TTTTTTTTTGCTTTG
1 TTTTTTTTTGC-TTG
*
285830 TTTTTTTTTTCTTG
1 TTTTTTTTTGCTTG
285844 TTTTTT
1 TTTTTT
285850 GACTTTTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.86
Consensus pattern (14 bp):
TTTTTTTTTGCTTG
Found at i:285844 original size:14 final size:14
Alignment explanation
Indices: 285809--285849 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
285799 CTTCATATTG
285809 TTTCTT-TTTTTTT
1 TTTCTTGTTTTTTT
*
285822 TTGCTTTGTTTTTTT
1 TTTC-TTGTTTTTTT
285837 TTTCTTGTTTTTT
1 TTTCTTGTTTTTT
285850 GACTTTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 3 0.12
14 11 0.46
15 10 0.42
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (14 bp):
TTTCTTGTTTTTTT
Found at i:285952 original size:15 final size:15
Alignment explanation
Indices: 285932--285968 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
285922 TGGTCCTACC
285932 TTTTTTCTTTTGTTT
1 TTTTTTCTTTTGTTT
*
285947 TTTTTTTTTTTGTTT
1 TTTTTTCTTTTGTTT
*
285962 TTATTTC
1 TTTTTTC
285969 AAGAATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.03, C:0.05, G:0.05, T:0.86
Consensus pattern (15 bp):
TTTTTTCTTTTGTTT
Found at i:286528 original size:17 final size:17
Alignment explanation
Indices: 286506--286547 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
286496 ATGATATGTT
286506 TTTTTTTTCAATTTTAA
1 TTTTTTTTCAATTTTAA
* * *
286523 TTTTTTCTCATTTTTTA
1 TTTTTTTTCAATTTTAA
286540 TTTTTTTT
1 TTTTTTTT
286548 TATATTTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTTCAATTTTAA
Found at i:286934 original size:56 final size:55
Alignment explanation
Indices: 286721--287024 Score: 301
Period size: 56 Copynumber: 5.3 Consensus size: 55
286711 CCCATTTGAT
*
286721 ATTATTGTACAAAGACTA-TATTTTTTAAAATAGAAATGTGGTTTTTAATTGAATAAAAA
1 ATTATTGTACAAAGACTACT-TTTTTTAAACTAGAAATGTGG-TTTTAATT--A-AAAAA
* * * * *
286780 ATTTTATTATACAAAGATTACATTTTTT-AACGT-GAAAATATAGTCTTTAATTAAAAAA
1 A--TTATTGTACAAAGACTACTTTTTTTAAAC-TAG-AAATGTGGT-TTTAATTAAAAAA
* *
286838 ATTTATTATACAAAGACTA-TGTTTTTTAAAATAGAAAATGTGGTTTGTAATTAAAAAA
1 A-TTATTGTACAAAGACTACT-TTTTTTAAACTAG-AAATGTGGTTT-TAATTAAAAAA
*
286896 ATTATTGTACAAAGTCTACTTTTTTTAAACTAGAAATGTGGTTTGTAATTAAAAAA
1 ATTATTGTACAAAGACTACTTTTTTTAAACTAGAAATGTGGTTT-TAATTAAAAAA
* * * *
286952 ATTATTTTACAAAGACTACCTTTTTTAAACTAGAAATGTGATCTTTTATTGAAAAAAA
1 ATTATTGTACAAAGACTACTTTTTTTAAACTAGAAATGTGGT-TTTAATT--AAAAAA
287010 ATTATTGTACAAAGA
1 ATTATTGTACAAAGA
287025 TTAGGTTTTC
Statistics
Matches: 211, Mismatches: 20, Indels: 29
0.81 0.08 0.11
Matches are distributed among these distances:
56 65 0.31
57 55 0.26
58 50 0.24
59 2 0.01
60 4 0.02
61 35 0.17
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (55 bp):
ATTATTGTACAAAGACTACTTTTTTTAAACTAGAAATGTGGTTTTAATTAAAAAA
Found at i:286948 original size:114 final size:112
Alignment explanation
Indices: 286721--287046 Score: 347
Period size: 114 Copynumber: 2.8 Consensus size: 112
286711 CCCATTTGAT
*
286721 ATTATTGTACAAAGACTATATTTTTTAAAATAGAAATGTGGTTTTTAATTGAATAAAAAATTTTA
1 ATTATTATACAAAGACTATATTTTTTAAAATAGAAATGTGG-TTTTAATT-AA-AAAAAA--TTA
*
286786 TTATACAAAGATTACATTTTTTAACGTGAAAATATAGTCTTTAATTAAAAAA
61 TTGTACAAAGATTACATTTTTTAACGTGAAAATATAGTCTTTAATTAAAAAA
*
286838 ATTTATTATACAAAGACTATGTTTTTTAAAATAGAAAATGTGGTTTGTAATT-AAAAAAATTATT
1 A-TTATTATACAAAGACTATATTTTTTAAAATAG-AAATGTGGTTT-TAATTAAAAAAAATTATT
* * *
286902 GTACAAAG-TCTACTTTTTTTAAAC-T-AGAAATGTGGT-TTGTAATTAAAAAA
63 GTACAAAGAT-TACATTTTTT-AACGTGA-AAATATAGTCTT-TAATTAAAAAA
* ** * * *
286952 ATTATTTTACAAAGACTACCTTTTTTAAACTAGAAATGTGATCTTTTATTGAAAAAAAATTATTG
1 ATTATTATACAAAGACTATATTTTTTAAAATAGAAATGTGGT-TTTAATT-AAAAAAAATTATTG
** *
287017 TACAAAGATTAGGTTTTCTTAAAGTGAAAA
64 TACAAAGATTACATTTT-TTAACGTGAAAA
287047 CTTGATTTTT
Statistics
Matches: 180, Mismatches: 15, Indels: 30
0.80 0.07 0.13
Matches are distributed among these distances:
112 12 0.07
113 34 0.19
114 69 0.38
115 10 0.06
116 7 0.04
117 2 0.01
118 33 0.18
119 13 0.07
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (112 bp):
ATTATTATACAAAGACTATATTTTTTAAAATAGAAATGTGGTTTTAATTAAAAAAAATTATTGTA
CAAAGATTACATTTTTTAACGTGAAAATATAGTCTTTAATTAAAAAA
Found at i:287710 original size:22 final size:23
Alignment explanation
Indices: 287654--287710 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 23
287644 TGACCCACTA
* * *
287654 TTTCTTAATCTTCTTTCAACTTT
1 TTTCTTAATTTTTTTTCAACATT
* *
287677 TTTATTCA-TTTTTTTCAA-ATT
1 TTTCTTAATTTTTTTTCAACATT
287698 TTTCTTAATTTTT
1 TTTCTTAATTTTT
287711 CTTATAATAA
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 8 0.31
22 12 0.46
23 6 0.23
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTCTTAATTTTTTTTCAACATT
Found at i:287938 original size:15 final size:15
Alignment explanation
Indices: 287918--287950 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
287908 TCACTTTTCA
*
287918 TTTTTTT-CTCTTAT
1 TTTTTTTACTATTAT
287932 TTTTTTTACTATTAT
1 TTTTTTTACTATTAT
287947 TTTT
1 TTTT
287951 ATAGGTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTACTATTAT
Found at i:290984 original size:6 final size:6
Alignment explanation
Indices: 290969--291067 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
290959 TTTTTTTTTC
* *
290969 TTTA-T TTTATT TTTATT TTTATT GTTTTTT TTGTATT TTACATT TTTA-T
1 TTTATT TTTATT TTTATT TTTATT -TTTATT TT-TATT TT-TATT TTTATT
* * * *
291018 TTTATT GTTATT TATTATT ATTA-T TTT-TT TATATT TTTTTCT TTTATT
1 TTTATT TTTATT T-TTATT TTTATT TTTATT TTTATT TTTAT-T TTTATT
291066 TT
1 TT
291068 ATCTTAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
5 15 0.21
6 33 0.45
7 25 0.34
ACGTcount: A:0.17, C:0.02, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:291021 original size:32 final size:32
Alignment explanation
Indices: 290961--291026 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
290951 CTATGTTCTT
*
290961 TTTTTTTCTTTATTTTATTTTTATTTTTATTG
1 TTTTTTTCTGTATTTTATTTTTATTTTTATTG
290993 TTTTTTT-TGTATTTTACATTTTTA-TTTTATTG
1 TTTTTTTCTGTATTTT--ATTTTTATTTTTATTG
291025 TT
1 TT
291027 ATTTATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 7 0.23
32 17 0.55
33 7 0.23
ACGTcount: A:0.14, C:0.03, G:0.05, T:0.79
Consensus pattern (32 bp):
TTTTTTTCTGTATTTTATTTTTATTTTTATTG
Found at i:291047 original size:32 final size:31
Alignment explanation
Indices: 290970--291049 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
290960 TTTTTTTTCT
* * *
290970 TTATTTTATTTTTAT-TTTTATTGTTTTTTT
1 TTATTTTATTTTTTTATTTTATTGTTATTTA
**
291000 TGTATTTTACATTTTTATTTTATTGTTATTTA
1 T-TATTTTATTTTTTTATTTTATTGTTATTTA
291032 TTATTATTATTTTTTTAT
1 TTATT-TTATTTTTTTAT
291050 ATTTTTTTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 1 0.03
31 15 0.38
32 24 0.60
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (31 bp):
TTATTTTATTTTTTTATTTTATTGTTATTTA
Found at i:291065 original size:13 final size:12
Alignment explanation
Indices: 290960--291067 Score: 58
Period size: 13 Copynumber: 8.3 Consensus size: 12
290950 TCTATGTTCT
290960 TTTTTTTTCTTTA
1 TTTTTTTT-TTTA
*
290973 -TTTTATTTTTA
1 TTTTTTTTTTTA
290984 TTTTTATTGTTTT-
1 TTTTT-TT-TTTTA
* *
290997 TTTTGTATTTTA
1 TTTTTTTTTTTA
* *
291009 CATTTTTATTTTA
1 -TTTTTTTTTTTA
291022 TTGTTATTTATTATTA
1 TT-TT-TTT-TT-TTA
*
291038 TTATTTTTTTATA
1 TT-TTTTTTTTTA
291051 TTTTTTTCTTTTA
1 TTTTTTT-TTTTA
291064 TTTT
1 TTTT
291068 ATCTTAGGTA
Statistics
Matches: 74, Mismatches: 11, Indels: 20
0.70 0.10 0.19
Matches are distributed among these distances:
11 8 0.11
12 17 0.23
13 29 0.39
14 8 0.11
15 5 0.07
16 7 0.09
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTTTA
Found at i:292125 original size:11 final size:10
Alignment explanation
Indices: 292111--292167 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 10
292101 TTTAATATTC
292111 TTTTATCTTTA
1 TTTT-TCTTTA
*
292122 TTTTATTTTTA
1 TTTT-TCTTTA
*
292133 TTTTTGTTTTA
1 TTTTT-CTTTA
*
292144 CTTTTCTTTA
1 TTTTTCTTTA
292154 TTTTT-TTTA
1 TTTTTCTTTA
292163 TTTTT
1 TTTTT
292168 TATTTTCACT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 9 0.22
10 9 0.22
11 23 0.56
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:292128 original size:5 final size:5
Alignment explanation
Indices: 292097--292203 Score: 60
Period size: 5 Copynumber: 20.6 Consensus size: 5
292087 TTAGATTAGG
* * * *
292097 TTTAT TTAAT ATTCT TTTAT CTTTAT TTTATT TTTATT TTTGT TTTACT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTA-T TTTA-T TTTAT TTTA-T
* *
292146 TTT-C TTTAT TTT-T TTTATTT TTTAT TTTCACT TTTAT TTTGT TTTA-
1 TTTAT TTTAT TTTAT TTTA--T TTTAT TTT-A-T TTTAT TTTAT TTTAT
292192 -TTAT TTTAT TTT
1 TTTAT TTTAT TTT
292204 CTTTAAATAA
Statistics
Matches: 79, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
3 3 0.04
4 7 0.09
5 39 0.49
6 21 0.27
7 9 0.11
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:292152 original size:32 final size:33
Alignment explanation
Indices: 292116--292203 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 33
292106 TATTCTTTTA
*
292116 TCTTTATTTTATTTTTATTTTTGTTTT-ACTTT
1 TCTTTATTTTATTTTTATTTTTATTTTCACTTT
292148 TCTTTA-TTT-TTTTTATTTTTTATTTTCACTTT
1 TCTTTATTTTATTTTTA-TTTTTATTTTCACTTT
* *
292180 TATTTTGTTTTATTATTTTATTTT
1 T-CTTTATTTTA-T-TTTTATTTT
292204 CTTTAAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
30 6 0.13
31 12 0.26
32 12 0.26
33 3 0.07
34 3 0.07
36 5 0.11
37 5 0.11
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (33 bp):
TCTTTATTTTATTTTTATTTTTATTTTCACTTT
Found at i:292199 original size:37 final size:37
Alignment explanation
Indices: 292118--292203 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 37
292108 TTCTTTTATC
**
292118 TTTATTTTA-TTTTTATTTTTGTTTTACTTTTCTTTA
1 TTTATTTTATTTTTTATTTTACTTTTACTTTTCTTTA
* *
292154 TTTTTTTTATTTTTTATTTTCACTTTTA-TTTTGTTT-
1 TTTATTTTATTTTTTATTTT-ACTTTTACTTTTCTTTA
292190 TATTATTTTATTTT
1 T-TTATTTTATTTT
292204 CTTTAAATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
36 9 0.21
37 28 0.67
38 5 0.12
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (37 bp):
TTTATTTTATTTTTTATTTTACTTTTACTTTTCTTTA
Found at i:292310 original size:59 final size:58
Alignment explanation
Indices: 292200--292415 Score: 259
Period size: 56 Copynumber: 3.8 Consensus size: 58
292190 TATTATTTTA
* * *
292200 TTTTCTT-TAAATAAA-TCTAAAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAATTTTAAAAAAAGAT-TTTTTGAGGAAAAGTTGAAAGTATCAAT
292256 TTTTCTT-AAAATAAATTTTCAAAAAAAAGATTTTTTTGAGG-AAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAATTTT--AAAAAAAGA-TTTTTTGAGGAAAAGTTGAAAGTATCAAT
*
292315 TTTTCTTAAAAATAAATTTTTAAAAAAG--TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAATTTTAAAAAAAGATTTTTTGAGGAAAAGTTGAAAGTATCAAT
* ** * *
292371 TTTCCTTAAAAATAAATTTTTTAAAAA-ATATTTTGGGGAAAAGTT
1 TTTTCTTAAAAATAAATTTTAAAAAAAGATTTTTTGAGGAAAAGTT
292416 TTTGAGGAAA
Statistics
Matches: 143, Mismatches: 8, Indels: 17
0.85 0.05 0.10
Matches are distributed among these distances:
55 9 0.06
56 57 0.40
57 16 0.11
58 7 0.05
59 32 0.22
60 21 0.15
61 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (58 bp):
TTTTCTTAAAAATAAATTTTAAAAAAAGATTTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:303254 original size:15 final size:15
Alignment explanation
Indices: 303225--303266 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
303215 TAGAAAAGTC
303225 AAAAAAC-AAGAAAA
1 AAAAAACAAAGAAAA
*
303239 AAAAAACAAAGCAAA
1 AAAAAACAAAGAAAA
303254 AAAAAA-AAAGAAA
1 AAAAAACAAAGAAA
303267 CAATATGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.86, C:0.07, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAACAAAGAAAA
Found at i:303505 original size:14 final size:14
Alignment explanation
Indices: 303486--303517 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
303476 TTTTTAAGTT
*
303486 AAAAAATATGTTTA
1 AAAAAATATGCTTA
303500 AAAAAATATGCTTA
1 AAAAAATATGCTTA
303514 AAAA
1 AAAA
303518 TTTTAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (14 bp):
AAAAAATATGCTTA
Found at i:309408 original size:18 final size:18
Alignment explanation
Indices: 309387--309421 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
309377 TTTCTTCTAA
* *
309387 CAAATTTTTTCTTTTTAT
1 CAAATTTATGCTTTTTAT
309405 CAAATTTATGCTTTTTA
1 CAAATTTATGCTTTTTA
309422 GGCTTCCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.60
Consensus pattern (18 bp):
CAAATTTATGCTTTTTAT
Found at i:316294 original size:29 final size:30
Alignment explanation
Indices: 316248--316306 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
316238 AGTTTGATTC
* * *
316248 AAATTTTACTTTGGTTTCTAAAT-CTTAAA
1 AAATTTTAATTAGATTTCTAAATACTTAAA
*
316277 AAATTTTAATTAGATTTCTAATTACTTAAA
1 AAATTTTAATTAGATTTCTAAATACTTAAA
316307 GTTGTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (30 bp):
AAATTTTAATTAGATTTCTAAATACTTAAA
Found at i:317142 original size:13 final size:13
Alignment explanation
Indices: 317108--317141 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
317098 ATTTTTATTT
317108 TTTATAAAACATA
1 TTTATAAAACATA
*
317121 TTTATAAAATATA
1 TTTATAAAACATA
317134 TTTA-AAAA
1 TTTATAAAA
317142 AGAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (13 bp):
TTTATAAAACATA
Found at i:317195 original size:20 final size:20
Alignment explanation
Indices: 317170--317232 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
317160 TGTTATTTAA
317170 AAAATAAATTTTTTGGATAG
1 AAAATAAATTTTTTGGATAG
**
317190 AAAAT-AATATAATT---TA-
1 AAAATAAAT-TTTTTGGATAG
317206 AAAATAAATTTTTTGGATAG
1 AAAATAAATTTTTTGGATAG
317226 AAAATAA
1 AAAATAA
317233 TATATTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 8 0.24
17 5 0.15
19 5 0.15
20 15 0.45
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (20 bp):
AAAATAAATTTTTTGGATAG
Found at i:317219 original size:37 final size:36
Alignment explanation
Indices: 317164--317241 Score: 138
Period size: 36 Copynumber: 2.1 Consensus size: 36
317154 GATGTTTGTT
317164 ATTTAAAAAATAAATTTTTTGGATAGAAAATAATATA
1 ATTT-AAAAATAAATTTTTTGGATAGAAAATAATATA
317201 ATTTAAAAATAAATTTTTTGGATAGAAAATAATATA
1 ATTTAAAAATAAATTTTTTGGATAGAAAATAATATA
*
317237 TTTTA
1 ATTTA
317242 TTATGACTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 36 0.90
37 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (36 bp):
ATTTAAAAATAAATTTTTTGGATAGAAAATAATATA
Found at i:335969 original size:18 final size:18
Alignment explanation
Indices: 335948--336011 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 18
335938 TTATATATTA
335948 TTATTT-ACTTGATTTTAT
1 TTATTTAACTT-ATTTTAT
335966 TTATTTAACTTATTTTAT
1 TTATTTAACTTATTTTAT
* *
335984 CTATATTTTATTTA-TTTATT
1 -T-TATTTAACTTATTTTA-T
336004 TTATTTAA
1 TTATTTAA
336012 ATTAATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 19 0.49
19 10 0.26
20 10 0.26
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
TTATTTAACTTATTTTAT
Found at i:335969 original size:42 final size:40
Alignment explanation
Indices: 335923--336010 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 40
335913 CCATTTGTTT
*
335923 TTTATTT-TTATTTTGTTATATATTATTATTTACTTGATTTTA
1 TTTATTTATTATTTT-ATATATATT-TTATTTA-TTGATTTTA
* *
335965 TTTATTTAACTTATTTTATCTATATTTTATTTATTTATTTTA
1 TTTATTT-A-TTATTTTATATATATTTTATTTATTGATTTTA
336007 TTTA
1 TTTA
336011 AATTAATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
42 19 0.47
43 7 0.17
44 7 0.17
45 7 0.17
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.69
Consensus pattern (40 bp):
TTTATTTATTATTTTATATATATTTTATTTATTGATTTTA
Found at i:349377 original size:2 final size:2
Alignment explanation
Indices: 349370--349401 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
349360 TCTATCACAT
349370 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
349402 AACTAACAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:355362 original size:13 final size:13
Alignment explanation
Indices: 355343--355373 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
355333 TTTTTTAAAT
355343 AAAAAAATCAAAAG
1 AAAAAAAT-AAAAG
355357 AAAAAAATAAAAG
1 AAAAAAATAAAAG
355370 AAAA
1 AAAA
355374 GAATTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.84, C:0.03, G:0.06, T:0.06
Consensus pattern (13 bp):
AAAAAAATAAAAG
Found at i:362836 original size:2 final size:2
Alignment explanation
Indices: 362829--362871 Score: 54
Period size: 2 Copynumber: 21.5 Consensus size: 2
362819 TGTATGCAAG
362829 AT AT AT AT GA- AT AT A- AT CAT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT -AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
362871 A
1 A
362872 CTTGTTTAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 2 0.05
2 32 0.86
3 3 0.08
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:364734 original size:17 final size:18
Alignment explanation
Indices: 364695--364736 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
364685 GAGAAAATAA
364695 GATTTTTTTTAAGAATCT
1 GATTTTTTTTAAGAATCT
* * *
364713 TATTTTTTTT-ATAATGT
1 GATTTTTTTTAAGAATCT
364730 GATTTTT
1 GATTTTT
364737 ATGTTTAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.64
Consensus pattern (18 bp):
GATTTTTTTTAAGAATCT
Found at i:365210 original size:16 final size:16
Alignment explanation
Indices: 365168--365210 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
365158 TTTTTAAAAT
365168 AATATTAAATTATTTGA
1 AATATT-AATTATTTGA
*
365185 AAT-TAAAATTATTTGA
1 AATAT-TAATTATTTGA
365201 AATATTAATT
1 AATATTAATT
365211 GTATTAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (16 bp):
AATATTAATTATTTGA
Found at i:365447 original size:60 final size:59
Alignment explanation
Indices: 365376--365494 Score: 170
Period size: 60 Copynumber: 2.0 Consensus size: 59
365366 ATAGTAGATA
365376 TTAAAAATTTATTTTTGAA-AATTTAAAATTTTAACAAAGATCTTG-TTTTTAAGATAAAAG
1 TTAAAAATTTATTTTT-AACAATTTAAAATTTTAACAAAGA--TTGATTTTTAAGATAAAAG
* *
365436 TTAAAATTTTATTTTTAACAATTTGAAATTTTAACAAAGATTGCATTTTTAAGATAAAA
1 TTAAAAATTTATTTTTAACAATTTAAAATTTTAACAAAGATTG-ATTTTTAAGATAAAA
365495 AAAATATGAT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
58 3 0.06
59 2 0.04
60 49 0.91
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.44
Consensus pattern (59 bp):
TTAAAAATTTATTTTTAACAATTTAAAATTTTAACAAAGATTGATTTTTAAGATAAAAG
Found at i:365699 original size:2 final size:2
Alignment explanation
Indices: 365692--365721 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
365682 CAAATGCTTT
365692 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
365722 ATTTTTCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:371451 original size:12 final size:13
Alignment explanation
Indices: 371434--371462 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
371424 CATGAAAAAT
371434 AAAAAAATTTTA-
1 AAAAAAATTTTAG
371446 AAAAAAATTTTAG
1 AAAAAAATTTTAG
371459 AAAA
1 AAAA
371463 GTTTTAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
AAAAAAATTTTAG
Found at i:372079 original size:25 final size:25
Alignment explanation
Indices: 372044--372095 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
372034 AATCAAACAC
*
372044 TTATAAGCTTTAAATAAAATAAAAT
1 TTATAAACTTTAAATAAAATAAAAT
*
372069 TTATAAACTTTAAATAAAATAATAT
1 TTATAAACTTTAAATAAAATAAAAT
372094 TT
1 TT
372096 TATTTACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (25 bp):
TTATAAACTTTAAATAAAATAAAAT
Found at i:380625 original size:18 final size:18
Alignment explanation
Indices: 380604--380638 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
380594 TTAAAATTTC
380604 TTCAAATATGAAAAAAAT
1 TTCAAATATGAAAAAAAT
* *
380622 TTCAAGTATTAAAAAAA
1 TTCAAATATGAAAAAAA
380639 ATCTGATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
TTCAAATATGAAAAAAAT
Found at i:386940 original size:13 final size:13
Alignment explanation
Indices: 386922--386947 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
386912 TGGCTTGCTT
386922 TATTTTATTTTTA
1 TATTTTATTTTTA
386935 TATTTTATTTTTA
1 TATTTTATTTTTA
386948 CTTTATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTTATTTTTA
Found at i:388882 original size:34 final size:35
Alignment explanation
Indices: 388835--388913 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
388825 ATATATTGAT
*
388835 TTTAGATTGAAATAAATATAATAATAGCATA-TAAA
1 TTTAG-TTAAAATAAATATAATAATAGCATATTAAA
* *
388870 TTTAGTTAAAATAAATATAATATTATCATATTAAA
1 TTTAGTTAAAATAAATATAATAATAGCATATTAAA
*
388905 TTTAATTAA
1 TTTAGTTAA
388914 TTAAAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 22 0.56
35 17 0.44
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.41
Consensus pattern (35 bp):
TTTAGTTAAAATAAATATAATAATAGCATATTAAA
Found at i:391012 original size:7 final size:7
Alignment explanation
Indices: 391000--391036 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
390990 ACAAAGATTA
391000 TTTTAAT
1 TTTTAAT
391007 TTTTAAT
1 TTTTAAT
391014 TTTTAAT
1 TTTTAAT
391021 TTTTAAT
1 TTTTAAT
391028 CTTTTAAT
1 -TTTTAAT
391036 T
1 T
391037 ATGATAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTAAT
Found at i:397302 original size:35 final size:34
Alignment explanation
Indices: 397217--397302 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
397207 AAAAATGTCG
* *
397217 CTAA-TTAGTGGTATTTTTATGATAGGAACGCCT
1 CTAATTTAGTGGTATTTTTATGATAAGAACGCCA
** * *
397250 CTAATTTAGTGACATTTTTTTGATAAGAACGTCA
1 CTAATTTAGTGGTATTTTTATGATAAGAACGCCA
*
397284 CTATTTTTAGTGGTATTTT
1 CTA-ATTTAGTGGTATTTT
397303 ATGGTATAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 4 0.10
34 26 0.62
35 12 0.29
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.45
Consensus pattern (34 bp):
CTAATTTAGTGGTATTTTTATGATAAGAACGCCA
Found at i:399577 original size:58 final size:57
Alignment explanation
Indices: 399216--399604 Score: 362
Period size: 57 Copynumber: 6.7 Consensus size: 57
399206 TTGTGCAGGA
** * * * *
399216 AAAATTGATACTTTCAA-TTTTTTCTCAAAATA-TTTTTGAAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAA-TTTATTTTCAAGG
* * *
399272 AAAATTGATACTTTCAACTTTT-TCTCAAAAAAACCTTTTTTGAAAATTTATTTGT-GAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAATA--TTTTTTGAAAATTTATTT-TCAAGG
* * * *
399331 AAAATTGATACTTTCAA-TTTTTCCTCAAAATATCTTTTTGAAACTTTAATTTTGAA-G
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATAT-TTTTTGAAAATTT-ATTTTCAAGG
* ** * *
399388 AAAATTGATACTTTTAACTTTTTCTCAAAAAAAAAAACCTTTTTTGAAAATTTATCTTT-AACG
1 AAAATTGATACTTTCAAC-TTTTC-C--CTAAAAATA--TTTTTTGAAAATTTAT-TTTCAAGG
* *
399451 AAAATTGATACTTTCAACTTTTCCTTAAAACCT-TTTTTTGAAAATTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAA-ATATTTTTTGAAAATTTATTTTCAAGG
* * *
399508 AAAATTCATACTTTCAACTTTTCCCTAAAAATATTTTTTAGAAAGTTTGTTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAAATTTATTTTCAAGG
*
399566 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
399605 TTGGATTTTA
Statistics
Matches: 281, Mismatches: 29, Indels: 44
0.79 0.08 0.12
Matches are distributed among these distances:
56 25 0.09
57 92 0.33
58 67 0.24
59 36 0.13
60 12 0.04
61 1 0.00
62 14 0.05
63 33 0.12
64 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTCAAGG
Found at i:399630 original size:5 final size:5
Alignment explanation
Indices: 399622--399705 Score: 70
Period size: 5 Copynumber: 16.8 Consensus size: 5
399612 TTATTTAAAG
*
399622 AAAAT AAAAT --AAT AAAAC AAAAT GAAAAT GAAAAT AAAAAT AAAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT AAAAT
*
399667 AAAAGT AAAAT AAAA- ATAA- AAAAT AAAAT AAAGAT AAAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAA
399706 ACAAAAGAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
3 3 0.04
4 10 0.15
5 29 0.43
6 25 0.37
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:399676 original size:7 final size:6
Alignment explanation
Indices: 399622--399711 Score: 66
Period size: 6 Copynumber: 15.5 Consensus size: 6
399612 TTATTTAAAG
* *
399622 AAAAT- AAAATA ATAAA-A CAAAATG AAAATG AAAATA AAAAT- AAAA-A
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA AAAATA
* * *
399668 AAAGT- AAAATA AAAATA AAAA-A TAAAATA AAGATA AAAACA AAA
1 AAAATA AAAATA AAAATA AAAATA -AAAATA AAAATA AAAATA AAA
399712 GAATATTAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
5 17 0.25
6 47 0.68
7 5 0.07
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:399703 original size:18 final size:18
Alignment explanation
Indices: 399622--399706 Score: 84
Period size: 18 Copynumber: 4.6 Consensus size: 18
399612 TTATTTAAAG
*
399622 AAAATAAAATAATAAAA-C
1 AAAATAAAA-AATAAAATA
*
399640 AAAAT-GAAAATGAAAATA
1 AAAATAAAAAAT-AAAATA
399658 AAAATAAAAAAAAGTAAAATA
1 AAAAT--AAAAAA-TAAAATA
399679 AAAATAAAAAATAAAATA
1 AAAATAAAAAATAAAATA
*
399697 AAGATAAAAA
1 AAAATAAAAA
399707 CAAAAGAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
16 3 0.05
17 6 0.11
18 26 0.46
19 6 0.11
21 15 0.26
22 1 0.02
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAATAAAAAATAAAATA
Found at i:399755 original size:4 final size:4
Alignment explanation
Indices: 399746--399786 Score: 55
Period size: 4 Copynumber: 10.2 Consensus size: 4
399736 TAATAATAAT
* * *
399746 AATA AATA AACA AATA AATA AATA TATA AATA TATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA A
399787 TAATAATAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:399774 original size:8 final size:7
Alignment explanation
Indices: 399737--399796 Score: 61
Period size: 8 Copynumber: 8.3 Consensus size: 7
399727 CTAATCTACT
399737 AATAAT-
1 AATAATA
399743 AATAATA
1 AATAATA
*
399750 AATAAACA
1 AAT-AATA
399758 AATAAATA
1 AAT-AATA
399766 AATATATA
1 AATA-ATA
399774 AATATATA
1 AATA-ATA
399782 AATAAT-
1 AATAATA
399788 AATAATA
1 AATAATA
399795 AA
1 AA
399797 ATGAAAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
6 12 0.25
7 8 0.17
8 28 0.58
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (7 bp):
AATAATA
Found at i:400239 original size:19 final size:19
Alignment explanation
Indices: 400201--400239 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
400191 GAAAATGGTT
*
400201 GCCGAAAACTGAAAAGTTG
1 GCCGAAAACTGAAAACTTG
**
400220 GCCGAAAACTTTAAACTTG
1 GCCGAAAACTGAAAACTTG
400239 G
1 G
400240 TCGGAATAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (19 bp):
GCCGAAAACTGAAAACTTG
Found at i:400736 original size:14 final size:14
Alignment explanation
Indices: 400719--400768 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
400709 ATAAATTAAC
400719 AATAATAATAGATA
1 AATAATAATAGATA
400733 AATAATAATA-A-A
1 AATAATAATAGATA
*
400745 TAT-ATAACTAGATA
1 AATAATAA-TAGATA
*
400759 AATAAAAATA
1 AATAATAATA
400769 TATATATATG
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
11 4 0.14
12 5 0.17
13 2 0.07
14 15 0.52
15 3 0.10
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (14 bp):
AATAATAATAGATA
Found at i:400746 original size:21 final size:20
Alignment explanation
Indices: 400681--400746 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 20
400671 TTAAATGAAG
*
400681 ATAATCAGATAAACAAAA-AA
1 ATAAT-AGATAAATAAAATAA
*
400701 ATTAACAGATAAATTAACAAT-A
1 A-TAATAGATAAA-TAA-AATAA
400723 ATAATAGATAAATAATAATAA
1 ATAATAGATAAATAA-AATAA
400744 ATA
1 ATA
400747 TATAACTAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
20 14 0.38
21 19 0.51
22 4 0.11
ACGTcount: A:0.65, C:0.06, G:0.05, T:0.24
Consensus pattern (20 bp):
ATAATAGATAAATAAAATAA
Found at i:400768 original size:26 final size:25
Alignment explanation
Indices: 400719--400776 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
400709 ATAAATTAAC
*
400719 AATA-ATAATAGATAAATAATAATA
1 AATATATAATAGATAAATAAAAATA
400743 AATATATAACTAGATAAATAAAAATA
1 AATATATAA-TAGATAAATAAAAATA
*
400769 TATATATA
1 AATATATA
400777 TGAATATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 4 0.13
26 22 0.73
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (25 bp):
AATATATAATAGATAAATAAAAATA
Found at i:408133 original size:61 final size:62
Alignment explanation
Indices: 407938--408134 Score: 152
Period size: 61 Copynumber: 3.1 Consensus size: 62
407928 ACTAATTCTC
* * * *
407938 TTAAATTTTTTGAAAAAAAATTATTGAAGGTATTTTTTGCATAATACACATTCAATAAT-CCT
1 TTAAATTTTTT-AAAAAAATTTATTGAAGGTGTTTTTTGCATAATACGCCTTCAATAATCCCT
** *** * * * *
408000 TTTCATTTTTATCAAGGGAATATCAGTGAAGGTG-ATTTT-CTATTAAAACGCCTTCAATAATTC
1 TTAAATTTTT-T-AAAAAAAT-TTATTGAAGGTGTTTTTTGC-A-TAATACGCCTTCAATAA-TC
*
408063 AC-
60 CCT
**
408065 TCCAATTTTTT-AAAAAATTTATTGAAGGTGTTTTTTGCATAATACGCCTTCAATAATCCCT
1 TTAAATTTTTTAAAAAAATTTATTGAAGGTGTTTTTTGCATAATACGCCTTCAATAATCCCT
408126 TTAAATTTT
1 TTAAATTTT
408135 AACGAGGAGA
Statistics
Matches: 98, Mismatches: 28, Indels: 19
0.68 0.19 0.13
Matches are distributed among these distances:
60 3 0.03
61 33 0.34
62 18 0.18
63 11 0.11
64 24 0.24
65 8 0.08
66 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (62 bp):
TTAAATTTTTTAAAAAAATTTATTGAAGGTGTTTTTTGCATAATACGCCTTCAATAATCCCT
Found at i:408860 original size:12 final size:13
Alignment explanation
Indices: 408836--408887 Score: 72
Period size: 12 Copynumber: 4.2 Consensus size: 13
408826 ATTGGTATGT
408836 TGAATGGTGTTTC
1 TGAATGGTGTTTC
408849 TGAATGGT-TTTC
1 TGAATGGTGTTTC
* *
408861 TAAATGGT-TTGC
1 TGAATGGTGTTTC
408873 TGAATGGTGTTTC
1 TGAATGGTGTTTC
408886 TG
1 TG
408888 TACATAGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
12 21 0.62
13 13 0.38
ACGTcount: A:0.17, C:0.08, G:0.29, T:0.46
Consensus pattern (13 bp):
TGAATGGTGTTTC
Found at i:410499 original size:21 final size:21
Alignment explanation
Indices: 410470--410514 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
410460 ATAAGTTTAA
*
410470 TATTAATTT-GTTTATTATATT
1 TATTAATTTGGTTT-TAATATT
*
410491 TATTGATTTGGTTTTAATATT
1 TATTAATTTGGTTTTAATATT
410512 TAT
1 TAT
410515 ATTTCATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (21 bp):
TATTAATTTGGTTTTAATATT
Found at i:412252 original size:62 final size:62
Alignment explanation
Indices: 412181--412378 Score: 204
Period size: 62 Copynumber: 3.2 Consensus size: 62
412171 TATTGAGTGA
*
412181 ATTATTGAAGGCATTTTAGGCCAAAAACGCCTTCAAGAATCCATTCTAACTTTTTTGTATGG
1 ATTATTGAAGGCATTTTAGGCCAAAAACGCCTTCAAGAATCCATTCTAAATTTTTTGTATGG
* * ** * *
412243 ATTATTGAAGGCATTTTTGACCAAAATTGCCTTCAATAATACC--TCATAAAAATTTATTG-ATT
1 ATTATTGAAGGCATTTTAGGCCAAAAACGCCTTCAAGAAT-CCATTC-T--AAATTTTTTGTA-T
412305 GG
61 GG
* * * * * * *
412307 ATTATTGAAGGCACTTTCGGCCAACAACGTCTTCAAGAATCCATTCCAAATTTTTTCTATGA
1 ATTATTGAAGGCATTTTAGGCCAAAAACGCCTTCAAGAATCCATTCTAAATTTTTTGTATGG
412369 ATTATTGAAG
1 ATTATTGAAG
412379 ATTAAAATGC
Statistics
Matches: 109, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
61 2 0.02
62 56 0.51
63 6 0.06
64 43 0.39
65 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (62 bp):
ATTATTGAAGGCATTTTAGGCCAAAAACGCCTTCAAGAATCCATTCTAAATTTTTTGTATGG
Found at i:412275 original size:126 final size:126
Alignment explanation
Indices: 412130--412378 Score: 374
Period size: 126 Copynumber: 2.0 Consensus size: 126
412120 TTAAGACATT
*
412130 TTTTTTACCAAAATCGCCTTCAATAAT-CTCTCATAAAAATTTATTGAGTGAATTATTGAAGGCA
1 TTTTTGACCAAAATCGCCTTCAATAATAC-CTCATAAAAATTTATTGAGTGAATTATTGAAGGCA
* * * * *
412194 TTTTAGGCCAAAAACGCCTTCAAGAATCCATTCTAACTTTTTTGTATGGATTATTGAAGGCA
65 CTTTAGGCCAAAAACGCCTTCAAGAATCCATTCCAAATTTTTTCTATGAATTATTGAAGGCA
* * *
412256 TTTTTGACCAAAATTGCCTTCAATAATACCTCATAAAAATTTATTGATTGGATTATTGAAGGCAC
1 TTTTTGACCAAAATCGCCTTCAATAATACCTCATAAAAATTTATTGAGTGAATTATTGAAGGCAC
* * *
412321 TTTCGGCCAACAACGTCTTCAAGAATCCATTCCAAATTTTTTCTATGAATTATTGAAG
66 TTTAGGCCAAAAACGCCTTCAAGAATCCATTCCAAATTTTTTCTATGAATTATTGAAG
412379 ATTAAAATGC
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
126 109 0.99
127 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (126 bp):
TTTTTGACCAAAATCGCCTTCAATAATACCTCATAAAAATTTATTGAGTGAATTATTGAAGGCAC
TTTAGGCCAAAAACGCCTTCAAGAATCCATTCCAAATTTTTTCTATGAATTATTGAAGGCA
Found at i:412341 original size:64 final size:62
Alignment explanation
Indices: 412137--412348 Score: 207
Period size: 64 Copynumber: 3.3 Consensus size: 62
412127 ATTTTTTTTA
* *
412137 CCAAAATCGCCTTCAATAATCTCTCATAAAAATTTATTGAGTGAATTATTGAAGGCATTTTAGG
1 CCAAAA-CGCCTTCAATAATC-CTCATAAAAATTTATTGATTGGATTATTGAAGGCATTTTAGG
* * * *
412201 CCAAAAACGCCTTCAAGAATCCATTC-T--AACTTTTTTG-TATGGATTATTGAAGGCATTTTTG
1 CC-AAAACGCCTTCAATAATCC--TCATAAAAATTTATTGAT-TGGATTATTGAAGGCATTTTAG
*
412262 A
62 G
* * *
412263 CCAAAATTGCCTTCAATAATACCTCATAAAAATTTATTGATTGGATTATTGAAGGCACTTTCGG
1 CCAAAA-CGCCTTCAATAAT-CCTCATAAAAATTTATTGATTGGATTATTGAAGGCATTTTAGG
* *
412327 CCAACAACGTCTTCAAGAATCC
1 CCAA-AACGCCTTCAATAATCC
412349 ATTCCAAATT
Statistics
Matches: 120, Mismatches: 17, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
61 6 0.05
62 42 0.35
63 5 0.04
64 58 0.48
65 9 0.08
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (62 bp):
CCAAAACGCCTTCAATAATCCTCATAAAAATTTATTGATTGGATTATTGAAGGCATTTTAGG
Found at i:412720 original size:63 final size:63
Alignment explanation
Indices: 412630--412829 Score: 178
Period size: 63 Copynumber: 3.2 Consensus size: 63
412620 TTTTAGTAGA
* *
412630 ATTATTAAAGGCGTTTATTGCAGAAAACACATTCAATAATCGCC-TA-CATATTTTTCTAA-AGA
1 ATTATTCAAGGCGTTTATTGCAGAAAACACATTCAATAATC-CCTTATC-TATTTTTATAACA-A
412692 G
63 G
* * *
412693 ATTATTCAAGGCGTTTTTTGCTA-AAAACGCATTCAGTAATCCCTTATCTATTTTTATAACAAG
1 ATTATTCAAGGCGTTTATTGC-AGAAAACACATTCAATAATCCCTTATCTATTTTTATAACAAG
* ** * * * * *
412756 ATTATTCAAGGCATTGTATACCA-AAAACGCTTTCAGTAATCCCCTATCCATTTTTATAACGAA-
1 ATTATTCAAGGCGTT-TATTGCAGAAAACACATTCAATAATCCCTTATCTATTTTTATAAC-AAG
*
412819 ATTATTTAAGG
1 ATTATTCAAGG
412830 TATTTTTTTT
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
62 2 0.02
63 108 0.92
64 8 0.07
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (63 bp):
ATTATTCAAGGCGTTTATTGCAGAAAACACATTCAATAATCCCTTATCTATTTTTATAACAAG
Found at i:412861 original size:65 final size:63
Alignment explanation
Indices: 412691--412861 Score: 209
Period size: 63 Copynumber: 2.7 Consensus size: 63
412681 TTTTCTAAAG
* * * * *
412691 AGATTATTCAAGGCGTTTTTTGCTAAAAACGCATTCAGTAATCCCTTATCTATTTTTATAACA
1 AGATTATTCAAGGCATTTTTTACCAAAAACGCATTCAGTAATCCCCTATCCATTTTTATAACA
* * *
412754 AGATTATTCAAGGCATTGTATACCAAAAACGCTTTCAGTAATCCCCTATCCATTTTTATAACGA
1 AGATTATTCAAGGCATTTTTTACCAAAAACGCATTCAGTAATCCCCTATCCATTTTTATAAC-A
* * *
412818 A-ATTATTTAAGGTATTTTTTTTACCAAAAACGCCTTCAGTAATC
1 AGATTATTCAAGGCA--TTTTTTACCAAAAACGCATTCAGTAATC
412862 ACACCAAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
63 65 0.71
64 2 0.02
65 25 0.27
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (63 bp):
AGATTATTCAAGGCATTTTTTACCAAAAACGCATTCAGTAATCCCCTATCCATTTTTATAACA
Found at i:413625 original size:2 final size:2
Alignment explanation
Indices: 413618--413646 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
413608 CCTCCCCTAA
413618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
413647 AGTAGAGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:413946 original size:2 final size:2
Alignment explanation
Indices: 413939--413964 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
413929 TTCTTACTCG
413939 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
413965 ATTTTGATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:414035 original size:2 final size:2
Alignment explanation
Indices: 414028--414056 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
414018 ATTCTTACTC
414028 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
414057 AAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:414132 original size:2 final size:2
Alignment explanation
Indices: 414058--414114 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
414048 ATATATATAA
414058 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
414100 AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG A
414115 AGTTTTATTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:416150 original size:8 final size:8
Alignment explanation
Indices: 416137--416162 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
416127 AATTTGTGAT
416137 ATGATACA
1 ATGATACA
416145 ATGATACA
1 ATGATACA
416153 ATGATACA
1 ATGATACA
416161 AT
1 AT
416163 ATGAAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.27
Consensus pattern (8 bp):
ATGATACA
Found at i:416171 original size:16 final size:16
Alignment explanation
Indices: 416137--416174 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
416127 AATTTGTGAT
*
416137 ATGATACAATGATACA
1 ATGATACAATGATAAA
416153 ATGATACAAT-ATGAAA
1 ATGATACAATGAT-AAA
416169 ATGATA
1 ATGATA
416175 TGAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (16 bp):
ATGATACAATGATAAA
Found at i:423318 original size:18 final size:18
Alignment explanation
Indices: 423261--423324 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
423251 AGCAATTTTT
* * *
423261 AAATTTTAATATTTTTAA
1 AAATTTAAAAATTTATAA
*
423279 AAAATTAAAAATTTATAA
1 AAATTTAAAAATTTATAA
*
423297 AAATTTGAAAATTTATAA
1 AAATTTAAAAATTTATAA
*
423315 AAATTCAAAA
1 AAATTTAAAA
423325 TAATTTTTTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATTTAAAAATTTATAA
Found at i:423391 original size:31 final size:30
Alignment explanation
Indices: 423346--423435 Score: 83
Period size: 31 Copynumber: 2.9 Consensus size: 30
423336 ATTAGAGAGG
* *
423346 CTAAATTTTGAATTTAGTATGAGTATAAGGA
1 CTAAATTTTAAATTT-GTATGAGTATAAGAA
* * * *
423377 TTAAATTTCAAATTT-TATCCGAATACAAGAA
1 CTAAATTTTAAATTTGTAT--GAGTATAAGAA
423408 CTAAATTTTAAATTTCGTATGAGTATAA
1 CTAAATTTTAAATTT-GTATGAGTATAA
423436 AAATCATTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
29 3 0.07
31 39 0.87
33 3 0.07
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (30 bp):
CTAAATTTTAAATTTGTATGAGTATAAGAA
Found at i:423516 original size:20 final size:20
Alignment explanation
Indices: 423491--423543 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
423481 TCACATTAGC
423491 AAGTTAATG-CTATGTCATTA
1 AAGTTAATGTC-ATGTCATTA
*
423511 AAGTTAATGTCATGTTATTA
1 AAGTTAATGTCATGTCATTA
423531 AA-TTCAATGTCAT
1 AAGTT-AATGTCAT
423544 ATCAACATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 2 0.07
20 27 0.90
21 1 0.03
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (20 bp):
AAGTTAATGTCATGTCATTA
Found at i:424593 original size:24 final size:24
Alignment explanation
Indices: 424562--424610 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
424552 TATTTTGATT
424562 TTTTATTATTACATAATATAAAAA
1 TTTTATTATTACATAATATAAAAA
* *
424586 TTTTATTATTATATAATATATAAA
1 TTTTATTATTACATAATATAAAAA
424610 T
1 T
424611 AAATTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTTATTATTACATAATATAAAAA
Found at i:424634 original size:13 final size:13
Alignment explanation
Indices: 424616--424662 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
424606 TAAATAAATT
424616 TTAATTTTTATTA
1 TTAATTTTTATTA
424629 TTAATTTTTATT-
1 TTAATTTTTATTA
424641 TTAATATTTTAATTA
1 TTAAT-TTTT-ATTA
424656 TT-ATTTT
1 TTAATTTT
424663 GTTTTTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
12 5 0.16
13 19 0.61
14 5 0.16
15 2 0.06
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTAATTTTTATTA
Found at i:424652 original size:20 final size:19
Alignment explanation
Indices: 424612--424662 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
424602 TATATAAATA
*
424612 AATTTTAATTTTTATTATT
1 AATTTTTATTTTTATTATT
424631 AATTTTTATTTTAATATT-TT
1 AATTTTTATTTT--TATTATT
*
424651 AATTATTATTTT
1 AATTTTTATTTT
424663 GTTTTTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 11 0.39
20 13 0.46
21 4 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
AATTTTTATTTTTATTATT
Found at i:424669 original size:27 final size:25
Alignment explanation
Indices: 424613--424662 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
424603 ATATAAATAA
424613 ATTTTAATTTTTATTATTAATTTTT
1 ATTTTAATTTTTATTATTAATTTTT
424638 ATTTTAATATTTTAATTATT-ATTTT
1 ATTTTAAT-TTTT-ATTATTAATTTT
424663 GTTTTTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.35
26 9 0.39
27 6 0.26
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (25 bp):
ATTTTAATTTTTATTATTAATTTTT
Found at i:424788 original size:6 final size:6
Alignment explanation
Indices: 424724--424750 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
424714 ATACGTATCA
424724 TTAATT TTAATT TTAATT TTAATT TTA
1 TTAATT TTAATT TTAATT TTAATT TTA
424751 TAATAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTAATT
Found at i:436759 original size:17 final size:17
Alignment explanation
Indices: 436737--436772 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
436727 TTAATGCAAA
436737 ATTAGAATTATGGAGAC
1 ATTAGAATTATGGAGAC
436754 ATTAGAATTATGGAGAC
1 ATTAGAATTATGGAGAC
436771 AT
1 AT
436773 ACACTGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (17 bp):
ATTAGAATTATGGAGAC
Found at i:438656 original size:22 final size:25
Alignment explanation
Indices: 438630--438679 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
438620 TTGTTTGTTT
438630 TTTCT-TTT-CTTTTATCTTT-TTA
1 TTTCTATTTACTTTTATCTTTATTA
*
438652 TTTCTATTTACTTTTATTTTTATTA
1 TTTCTATTTACTTTTATCTTTATTA
438677 TTT
1 TTT
438680 TTTATATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 3 0.12
24 10 0.42
25 6 0.25
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTCTATTTACTTTTATCTTTATTA
Found at i:438891 original size:20 final size:20
Alignment explanation
Indices: 438863--438909 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
438853 GTTTTTTTCA
* *
438863 TTTTCTTTTCTCT-TTTCTT
1 TTTTCTTTTTTCTATTTATT
438882 TTTTCTTTTTTCTATTTATT
1 TTTTCTTTTTTCTATTTATT
438902 TTTTCTTT
1 TTTTCTTT
438910 CTGTTCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTCTTTTTTCTATTTATT
Found at i:441041 original size:29 final size:29
Alignment explanation
Indices: 440983--441041 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
440973 ATGTATTATA
* * *
440983 TTAATGAAATTATTATTTAATACCTCAAT
1 TTAATAAAAATATTATTTAATACATCAAT
*
441012 TTAATAAAAATATTATATTTATACAT-AAT
1 TTAATAAAAATATTAT-TTAATACATCAAT
441041 T
1 T
441042 AAGGTGTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (29 bp):
TTAATAAAAATATTATTTAATACATCAAT
Found at i:442101 original size:19 final size:17
Alignment explanation
Indices: 442074--442125 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 17
442064 TGAGCTATTC
442074 TTTTTTTTACTTTTTGTT
1 TTTTTTTTA-TTTTTGTT
442092 TTTGTTTTTAATTTTTTGTT
1 TTT-TTTTT-A-TTTTTGTT
442112 TTTTTTTTATTTTT
1 TTTTTTTTATTTTT
442126 TTATTTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 5 0.16
18 4 0.13
19 10 0.32
20 12 0.39
ACGTcount: A:0.08, C:0.02, G:0.06, T:0.85
Consensus pattern (17 bp):
TTTTTTTTATTTTTGTT
Found at i:442126 original size:19 final size:19
Alignment explanation
Indices: 442074--442143 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
442064 TGAGCTATTC
*
442074 TTTTTTTTA-CTTTTTGTT
1 TTTTTTTTATTTTTTTGTT
*
442092 TTTGTTTTTAATTTTTTGTT
1 TTT-TTTTTATTTTTTTGTT
*
442112 TTTTTTTTATTTTTTTATT
1 TTTTTTTTATTTTTTTGTT
*
442131 TTAATTTTTATTT
1 TT-TTTTTTATTT
442144 GAGAAATTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.07
19 22 0.49
20 20 0.44
ACGTcount: A:0.11, C:0.01, G:0.04, T:0.83
Consensus pattern (19 bp):
TTTTTTTTATTTTTTTGTT
Found at i:443760 original size:2 final size:2
Alignment explanation
Indices: 443749--443778 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
443739 ACATTTAAAA
443749 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
443779 CTTCTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:447343 original size:18 final size:19
Alignment explanation
Indices: 447307--447359 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
447297 TTTTCAAATA
447307 AAAAAAATAATAATTTTTTCT-
1 AAAAAAATAA-AA--TTTTCTG
* *
447328 AAAAAAATGAAATTTTGTG
1 AAAAAAATAAAATTTTCTG
447347 AAAAAAATAAAAT
1 AAAAAAATAAAAT
447360 AAAATAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 5 0.18
19 12 0.43
20 2 0.07
21 9 0.32
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (19 bp):
AAAAAAATAAAATTTTCTG
Found at i:451124 original size:12 final size:13
Alignment explanation
Indices: 451102--451139 Score: 60
Period size: 12 Copynumber: 2.9 Consensus size: 13
451092 AAAAAAGCAA
451102 AAAATGAAAAAAT
1 AAAATGAAAAAAT
451115 AAAA-GAAAAAAT
1 AAAATGAAAAAAT
451127 AAAATGAGAAAAA
1 AAAATGA-AAAAA
451140 AAGCAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.52
13 6 0.26
14 5 0.22
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (13 bp):
AAAATGAAAAAAT
Found at i:454625 original size:37 final size:38
Alignment explanation
Indices: 454573--454657 Score: 106
Period size: 37 Copynumber: 2.3 Consensus size: 38
454563 ACCTCCAAAC
*
454573 TTTGTTTTTGC-CCACTTTGTCT-TTTTT-TTTTCCTTTT
1 TTTGTTTTT-CACCACTTTAT-TGTTTTTGTTTTCCTTTT
*
454610 TTTGTTTTTCACCACTTTATTGTTTTTGTTTTTCTTTT
1 TTTGTTTTTCACCACTTTATTGTTTTTGTTTTCCTTTT
454648 TTT-TTTTTCA
1 TTTGTTTTTCA
454658 TTTTTTTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
36 2 0.05
37 29 0.67
38 12 0.28
ACGTcount: A:0.06, C:0.15, G:0.07, T:0.72
Consensus pattern (38 bp):
TTTGTTTTTCACCACTTTATTGTTTTTGTTTTCCTTTT
Found at i:454655 original size:14 final size:14
Alignment explanation
Indices: 454632--454670 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
454622 CACTTTATTG
*
454632 TTTTTGTTTTTC-T
1 TTTTTTTTTTTCAT
454645 TTTTTTTTTTTCAT
1 TTTTTTTTTTTCAT
454659 TTTTTTTCTTTT
1 TTTTTTT-TTTT
454671 GCAAGGTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 8 0.35
15 4 0.17
ACGTcount: A:0.03, C:0.08, G:0.03, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTTTCAT
Found at i:457013 original size:18 final size:18
Alignment explanation
Indices: 456990--457030 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
456980 ACTATAGTGA
456990 TGATGGAGAATATGAAGG
1 TGATGGAGAATATGAAGG
457008 TGATGGAGAATATGAAGG
1 TGATGGAGAATATGAAGG
457026 TGATG
1 TGATG
457031 AAGGGTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.39, T:0.24
Consensus pattern (18 bp):
TGATGGAGAATATGAAGG
Found at i:463338 original size:36 final size:33
Alignment explanation
Indices: 463278--463359 Score: 83
Period size: 36 Copynumber: 2.4 Consensus size: 33
463268 GTCTTTTTTA
* * * *
463278 TGGTGATATTCAAAGACGTTTGCATTTTCTCTTCGG
1 TGGTGATATCCAAAGACATCTGCA--TTCACTT-GG
*
463314 TGGTGATATCCAAAGTCATCTGCATTCACTTGG
1 TGGTGATATCCAAAGACATCTGCATTCACTTGG
*
463347 CGGTGATATCCAA
1 TGGTGATATCCAA
463360 GTTCTCTTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 14 0.35
34 6 0.15
36 20 0.50
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (33 bp):
TGGTGATATCCAAAGACATCTGCATTCACTTGG
Found at i:463397 original size:92 final size:91
Alignment explanation
Indices: 463097--463397 Score: 292
Period size: 92 Copynumber: 3.3 Consensus size: 91
463087 TCACTCGATG
* * ** * *
463097 GTGATATGCAAAAACATTTGCATTTTCTCTTTAGTGGTGATATCCAAAATAATCTACATTCACTA
1 GTGATATCCAAAGACATTT-CATTTTCTCTTCGGTGGTGATATCCAAAGTCATCT-CATTCACTA
* **
463162 GATGGTGATATCTGAA-TCTTCTTCGGTA
64 GATGGTGATATC-CAAGTCTTCTTTAGTA
* * *
463190 GTGATATCGAAAGACATTTGCATTTT-T-TTCGGTAGTGATATCTAAAGTCATCTCTATTCACTC
1 GTGATATCCAAAGACATTT-CATTTTCTCTTCGGTGGTGATATCCAAAGTCATCTC-ATTCACT-
* *
463253 A-ATGGTGATATCCAAGTCTTTTTTA-TG
63 AGATGGTGATATCCAAGTCTTCTTTAGTA
* * *
463280 GTGATATTCAAAGACGTTTGCATTTTCTCTTCGGTGGTGATATCCAAAGTCATCTGCATTCACTT
1 GTGATATCCAAAGACATTT-CATTTTCTCTTCGGTGGTGATATCCAAAGTCATCT-CATTCACTA
**
463345 GGCGGTGATATCCAAGT-TCTCTTTAGTA
64 GATGGTGATATCCAAGTCT-TCTTTAGTA
463373 GTGATATCCAAAGACATCTT-ATTTT
1 GTGATATCCAAAGACAT-TTCATTTT
463398 TCATTGGTGA
Statistics
Matches: 172, Mismatches: 26, Indels: 21
0.79 0.12 0.10
Matches are distributed among these distances:
90 27 0.16
91 46 0.27
92 57 0.33
93 40 0.23
94 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (91 bp):
GTGATATCCAAAGACATTTCATTTTCTCTTCGGTGGTGATATCCAAAGTCATCTCATTCACTAGA
TGGTGATATCCAAGTCTTCTTTAGTA
Found at i:464080 original size:209 final size:209
Alignment explanation
Indices: 463548--464086 Score: 575
Period size: 210 Copynumber: 2.6 Consensus size: 209
463538 TCTTCTAGGT
* * * *
463548 AGAATGTTTTAAATTTTTAAAGTTTCAAGGGCTCTTTTTAGAGGGGCATTCGTAGATGTCAAGAT
1 AGAATATTTTAAATTTTTAAAGTTTCAAAGCCT-TTTTTAGAGGAGCATTCGTAGATGTCAAGAT
* * * * * * * * *
463613 GTGTAATACTTTCGGGCATTATCTTTAAGTCCTTCAGGCAAGATTCATAAATTTTTCAAGCTGAA
65 TTGTAAAACCTTCGAGCATTATCTTTAAGTCTTTCA-ACAAGATTCATAAGTCTTTCAAACTGAA
* * ** * *
463678 TCTGTTTTAGTGTTAAGATTTATAAAACTTCAAGGCATAGTCTTTAAGTTTTTCAAGGCAAGATT
129 TCTGTTTTAGTATTAAGATTTATAAAACCTCAAGGCATAGTCCCTAAGTCTCTCAAGGCAAGATT
* * *
463743 TATAAGTCCTGCGAAT
194 CATAAGTACTGCGAAC
* * *
463759 AGAATATTTTAAATTTTCAAAGTTTCAAAACCTTTTTTTAGAGGAGCATTCGTAGATGTTAAGAT
1 AGAATATTTTAAATTTTTAAAGTTTCAAAGCC-TTTTTTAGAGGAGCATTCGTAGATGTCAAGAT
*
463824 TTGTAAAACC-TCTGAGCATTATC-ATAAGTCTTTCAAGCAAGATTCATAAGTCTTTCAAACTGA
65 TTGTAAAACCTTC-GAGCATTATCTTTAAGTCTTTCAA-CAAGATTCATAAGTCTTTCAAACTGA
* * * *
463887 ATTTGTTTTAGTATTAAGATTTATAAGACCTC-TGAGCATAGTCCCTAAGTC-CTCTAA-GTAAG
128 ATCTGTTTTAGTATTAAGATTTATAAAACCTCAAG-GCATAGTCCCTAAGTCTCTC-AAGGCAAG
* * * *
463949 ATTCGTAAGTATTTCGAGC
191 ATTCATAAGTACTGCGAAC
* * * * *
463968 AGAATATTTTAAATTTTTAAAGTTTCAAAGCCTTTTTTAGAGGAGTATTTGTAAATGCCGAGATT
1 AGAATATTTTAAATTTTTAAAGTTTCAAAGCCTTTTTTAGAGGAGCATTCGTAGATGTCAAGATT
* * * * *
464033 TGTAAGACCTTCGAACATTATCTTTAAATCTTTCGAATAAAATTCATAAGTCTT
66 TGTAAAACCTTCGAGCATTATCTTTAAGTCTTTC-AACAAGATTCATAAGTCTT
464087 CCAAGTAAAT
Statistics
Matches: 272, Mismatches: 48, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
208 44 0.16
209 75 0.28
210 80 0.29
211 72 0.26
212 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.38
Consensus pattern (209 bp):
AGAATATTTTAAATTTTTAAAGTTTCAAAGCCTTTTTTAGAGGAGCATTCGTAGATGTCAAGATT
TGTAAAACCTTCGAGCATTATCTTTAAGTCTTTCAACAAGATTCATAAGTCTTTCAAACTGAATC
TGTTTTAGTATTAAGATTTATAAAACCTCAAGGCATAGTCCCTAAGTCTCTCAAGGCAAGATTCA
TAAGTACTGCGAAC
Found at i:464150 original size:208 final size:209
Alignment explanation
Indices: 463759--464151 Score: 472
Period size: 208 Copynumber: 1.9 Consensus size: 209
463749 TCCTGCGAAT
* **
463759 AGAATATTTTAAATTTTCAAAGTTTCAAAACCTTTTTTTAGAGGAGCATTCGTAGATGTTAAGAT
1 AGAATATTTTAAATTTTCAAAGTTTCAAAACCTTTTTTTAGAGGAGCATTCGTAAATGCCAAGAT
* * * *
463824 TTGTAAAACCTCTGAGCATTATCATAAGTCTTTCAAGCAAGATTCATAAGTCTTTCAAACTGAAT
66 TTGTAAAACCTCTGAACATTATCATAAATCTTTCAAGCAAAATTCATAAGTCTTTCAAACTAAAT
* * * * *
463889 TTGTTTTAGTATTAAGATTTATAAGACCTCTGAGCATAGTCCCTAAGTCCTCTAAGTAAGATTCG
131 CTGTTTCAATATTAAGATTTATAAGACCTCTGAACATAGTCCCTAAATCCTCTAAGTAAGATTCG
463954 TAAGTATTTCGAGC
196 TAAGTATTTCGAGC
* * * * *
463968 AGAATATTTTAAATTTTTAAAGTTTCAAAGCC-TTTTTTAGAGGAGTATTTGTAAATGCCGAGAT
1 AGAATATTTTAAATTTTCAAAGTTTCAAAACCTTTTTTTAGAGGAGCATTCGTAAATGCCAAGAT
* * * * *
464032 TTGTAAGACCT-TCGAACATTATCTTTAAATCTTTCGAA-TAAAATTCATAAGTC-TTCCAAGTA
66 TTGTAAAACCTCT-GAACATTATC-ATAAATCTTTC-AAGCAAAATTCATAAGTCTTTCAAACTA
* * * **
464094 AATCTGTTTCAATGTTGAGATTTATAAGACCT-TCGAACATATTCTTTAAATCCTCTAA
128 AATCTGTTTCAATATTAAGATTTATAAGACCTCT-GAACATAGTCCCTAAATCCTCTAA
464152 ACATAGTTTC
Statistics
Matches: 153, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
207 2 0.01
208 97 0.63
209 52 0.34
210 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (209 bp):
AGAATATTTTAAATTTTCAAAGTTTCAAAACCTTTTTTTAGAGGAGCATTCGTAAATGCCAAGAT
TTGTAAAACCTCTGAACATTATCATAAATCTTTCAAGCAAAATTCATAAGTCTTTCAAACTAAAT
CTGTTTCAATATTAAGATTTATAAGACCTCTGAACATAGTCCCTAAATCCTCTAAGTAAGATTCG
TAAGTATTTCGAGC
Found at i:464173 original size:83 final size:84
Alignment explanation
Indices: 464027--464184 Score: 182
Period size: 83 Copynumber: 1.9 Consensus size: 84
464017 TGTAAATGCC
* * *
464027 GAGATTTGTAAGACCTTCGAACATTATCTTTAAATCTTTCGAATAAAATTCATAAGTCTTCCAAG
1 GAGATTTATAAGACCTTCGAACATTATCTTTAAATCTCTCGAATAAAATTCATAAGTCATCCAAG
*
464092 TAA-ATCTGTTTCAATGTT
66 CAATATCTGTTTCAATGTT
* * *
464110 GAGATTTATAAGACCTTCGAACA-TATTCTTTAAATC-CTCTAA-ACATAGTTTC-TATGTCATC
1 GAGATTTATAAGACCTTCGAACATTA-TCTTTAAATCTCTCGAATA-A-A-ATTCATAAGTCATC
464171 CAAGCAATATCTGT
62 CAAGCAATATCTGT
464185 AAGTCTTTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
81 1 0.02
82 7 0.11
83 46 0.73
84 9 0.14
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (84 bp):
GAGATTTATAAGACCTTCGAACATTATCTTTAAATCTCTCGAATAAAATTCATAAGTCATCCAAG
CAATATCTGTTTCAATGTT
Found at i:464444 original size:10 final size:9
Alignment explanation
Indices: 464428--464500 Score: 76
Period size: 9 Copynumber: 7.9 Consensus size: 9
464418 AAGAATTCAA
464428 AAAAAAAAT
1 AAAAAAAAT
464437 ACAAAAAAAT
1 A-AAAAAAAT
* *
464447 CAAAAAATT
1 AAAAAAAAT
* *
464456 CAAGAAAAT
1 AAAAAAAAT
464465 -AAAAAAAT
1 AAAAAAAAT
464473 AAAAAAAAT
1 AAAAAAAAT
464482 AAAATAAAAT
1 AAAA-AAAAT
464492 AAAACAAAA
1 AAAA-AAAA
464501 GTTTAAAAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
8 7 0.13
9 27 0.49
10 21 0.38
ACGTcount: A:0.81, C:0.05, G:0.01, T:0.12
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:464476 original size:5 final size:5
Alignment explanation
Indices: 464460--464500 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
464450 AAAATTCAAG
*
464460 AAAAT -AAA- AAAAT AAAA- AAAAT AAAAT AAAAT AAAAC AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
464501 GTTTAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
4 10 0.31
5 22 0.69
ACGTcount: A:0.85, C:0.02, G:0.00, T:0.12
Consensus pattern (5 bp):
AAAAT
Found at i:467669 original size:28 final size:28
Alignment explanation
Indices: 467638--467698 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
467628 TTCAATCATC
467638 TATATCATAATA-AAATAATTACAAATCA
1 TATAT-ATAATACAAATAATTACAAATCA
* *
467666 TATATTTAATACAAATAATTACAAATCG
1 TATATATAATACAAATAATTACAAATCA
467694 TATAT
1 TATAT
467699 TTAAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (28 bp):
TATATATAATACAAATAATTACAAATCA
Found at i:467699 original size:28 final size:27
Alignment explanation
Indices: 467645--467702 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 27
467635 ATCTATATCA
467645 TAATAAAATAATTACAAATCATATATT
1 TAATAAAATAATTACAAATCATATATT
*
467672 TAATACAAATAATTACAAATCGTATATT
1 TAATA-AAATAATTACAAATCATATATT
467700 TAA
1 TAA
467703 AATAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (27 bp):
TAATAAAATAATTACAAATCATATATT
Found at i:474305 original size:6 final size:6
Alignment explanation
Indices: 474294--474322 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
474284 ATAAAACATA
474294 ATAATT ATAATT ATAATT ATAATT ATAAT
1 ATAATT ATAATT ATAATT ATAATT ATAAT
474323 CATTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATAATT
Found at i:476018 original size:2 final size:2
Alignment explanation
Indices: 476011--476037 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
476001 TTTGTTGGTC
476011 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
476038 TAGATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:477822 original size:24 final size:24
Alignment explanation
Indices: 477795--477840 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
477785 TAAAATAATG
* *
477795 TTGTAAAGATGTAATCTAACAAAA
1 TTGTAAAGAGGAAATCTAACAAAA
*
477819 TTGTAGAGAGGAAATCTAACAA
1 TTGTAAAGAGGAAATCTAACAA
477841 GATCTAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (24 bp):
TTGTAAAGAGGAAATCTAACAAAA
Found at i:479905 original size:16 final size:17
Alignment explanation
Indices: 479881--479913 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
479871 TTGCCAACTG
479881 TTTTCTTTTTTC-TTTT
1 TTTTCTTTTTTCATTTT
*
479897 TTTTTTTTTTTCATTTT
1 TTTTCTTTTTTCATTTT
479914 AGGGGACCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTCTTTTTTCATTTT
Found at i:484548 original size:117 final size:125
Alignment explanation
Indices: 484429--484701 Score: 358
Period size: 127 Copynumber: 2.2 Consensus size: 125
484419 TAAACTTTTT
*
484429 TATTATAATTTATATTATCTA-TCACAATA-AAAAATT-AAGTTTTTACACCTGTAAGCACAGAT
1 TATTATAA--TATA-TATCTATTCACAATATAAAAATTAAACTTTTTACACCTGTAAGCACAGAT
484491 AATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAATAAATATATGATTTTA-TATTA
63 AATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAATAAATATATGATTTTATTATTA
* *** * * *
484553 TATTATCAATATCATATTTATTTTTTAATATTATATTTAAACTTTTTACACCTGTAAGCACAGAT
1 TATTAT-AATAT-ATATCTA-TTCACAATATAAAAATTAAACTTTTTACACCTGTAAGCACAGAT
484618 AATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAATAAATATATGATTTTA-TATTA
63 AATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAATAAATATATGATTTTATTATTA
*
484680 TATTATCAATATCATATTTATT
1 TATTAT-AATAT-ATATCTATT
484702 TTTTAATATT
Statistics
Matches: 135, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
123 8 0.06
124 7 0.05
125 7 0.05
126 6 0.04
127 107 0.79
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (125 bp):
TATTATAATATATATCTATTCACAATATAAAAATTAAACTTTTTACACCTGTAAGCACAGATAAT
TTCATAATTAGATAATATTAAAATTTATAAAATTTTAATAAATATATGATTTTATTATTA
Found at i:484647 original size:127 final size:127
Alignment explanation
Indices: 484468--484724 Score: 514
Period size: 127 Copynumber: 2.0 Consensus size: 127
484458 AAAAATTAAG
484468 TTTTTACACCTGTAAGCACAGATAATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAAT
1 TTTTTACACCTGTAAGCACAGATAATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAAT
484533 AAATATATGATTTTATATTATATTATCAATATCATATTTATTTTTTAATATTATATTTAAAC
66 AAATATATGATTTTATATTATATTATCAATATCATATTTATTTTTTAATATTATATTTAAAC
484595 TTTTTACACCTGTAAGCACAGATAATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAAT
1 TTTTTACACCTGTAAGCACAGATAATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAAT
484660 AAATATATGATTTTATATTATATTATCAATATCATATTTATTTTTTAATATTATATTTAAAC
66 AAATATATGATTTTATATTATATTATCAATATCATATTTATTTTTTAATATTATATTTAAAC
484722 TTT
1 TTT
484725 AAATATAAAT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 130 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (127 bp):
TTTTTACACCTGTAAGCACAGATAATTTCATAATTAGATAATATTAAAATTTATAAAATTTTAAT
AAATATATGATTTTATATTATATTATCAATATCATATTTATTTTTTAATATTATATTTAAAC
Found at i:488453 original size:45 final size:45
Alignment explanation
Indices: 488402--488490 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
488392 AAATTAAAAT
488402 GTTGTTTTATGAATAGTAAATTACAAAGAATATATAAAAATAAAC
1 GTTGTTTTATGAATAGTAAATTACAAAGAATATATAAAAATAAAC
*
488447 GTTGTTTTATGAATAGTAAATTACAAAGAATATGTAAAAATAAA
1 GTTGTTTTATGAATAGTAAATTACAAAGAATATATAAAAATAAA
488491 TACAATTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.51, C:0.03, G:0.12, T:0.34
Consensus pattern (45 bp):
GTTGTTTTATGAATAGTAAATTACAAAGAATATATAAAAATAAAC
Found at i:490619 original size:15 final size:16
Alignment explanation
Indices: 490592--490621 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
490582 GATCAATAAA
490592 TTTTAACAGATAATGG
1 TTTTAACAGATAATGG
490608 TTTTAA-AGATAATG
1 TTTTAACAGATAATG
490622 AATACAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (16 bp):
TTTTAACAGATAATGG
Found at i:490897 original size:178 final size:178
Alignment explanation
Indices: 490586--490925 Score: 407
Period size: 178 Copynumber: 1.9 Consensus size: 178
490576 AAAATGGATC
* * * *
490586 AATAAATTTTAACAGATAATGGTTTTAAAGATAATGAATACAAAAGAAATCAAAAGTCCATAATC
1 AATAAATTTTAACAAATAATGATTTTAAAGAAAATGAATACAAAAGAAATCAAAAGTCAATAATC
* * * *
490651 CAAGAAACATGATAAATAAAAATTGAGAGAAAAAAGCGTAAAACAGACTAAAAAAACTCACATAA
66 AAAGAAACATGACAAACAAAAATTGAGAAAAAAAAGCGTAAAACAGACTAAAAAAACTCACATAA
*
490716 CTCTCACCCTTAAAAGAGATAGAAAG-CCATAAATCACAAGGTTTGATT
131 CTCTCACCCTTAAAAAAGATA-AAAGACCATAAATCACAAGGTTTGATT
* * * *
490764 AATAAATTTTAATAAATAATGATTTTAAATAAAATTAATACAAAA-AAATCAAAAGTCAATAATT
1 AATAAATTTTAACAAATAATGATTTTAAAGAAAATGAATACAAAAGAAATCAAAAGTCAATAATC
* * * * *** * * * **
490828 AAAGCAATATGACAAACAATAATTG-GAAAAAAAAGTGTAATTGATACATGAAAGACACTCATGT
66 AAAGAAACATGACAAACAAAAATTGAGAAAAAAAAGCGTAAAACAGAC-T-AAAAAAACTCACAT
490892 AACTCTCACCCTTAAAAAAGATAAAAGACCATAA
129 AACTCTCACCCTTAAAAAAGATAAAAGACCATAA
490926 GTTACAAAAA
Statistics
Matches: 134, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
176 16 0.12
177 41 0.31
178 77 0.57
ACGTcount: A:0.54, C:0.12, G:0.11, T:0.24
Consensus pattern (178 bp):
AATAAATTTTAACAAATAATGATTTTAAAGAAAATGAATACAAAAGAAATCAAAAGTCAATAATC
AAAGAAACATGACAAACAAAAATTGAGAAAAAAAAGCGTAAAACAGACTAAAAAAACTCACATAA
CTCTCACCCTTAAAAAAGATAAAAGACCATAAATCACAAGGTTTGATT
Found at i:491143 original size:21 final size:22
Alignment explanation
Indices: 491107--491148 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
491097 TAAATTTATA
491107 ATTTATGTAAAAAATACTTGAC
1 ATTTATGTAAAAAATACTTGAC
* *
491129 ATTTAT-TATAAAATATTTGA
1 ATTTATGTAAAAAATACTTGA
491149 ATTATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (22 bp):
ATTTATGTAAAAAATACTTGAC
Found at i:491189 original size:2 final size:2
Alignment explanation
Indices: 491151--491178 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
491141 ATATTTGAAT
491151 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
491179 ATGATTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:495926 original size:17 final size:17
Alignment explanation
Indices: 495906--495939 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
495896 GTTAGTAACG
*
495906 AAATAATAATTAAAGAA
1 AAATAATAAATAAAGAA
495923 AAATAATAAATAAAGAA
1 AAATAATAAATAAAGAA
495940 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (17 bp):
AAATAATAAATAAAGAA
Found at i:502816 original size:27 final size:27
Alignment explanation
Indices: 502771--502834 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
502761 GAGATTTCAA
* * *
502771 TGCTATTTACAATGGTAGACCTTAGAG
1 TGCTATTTACAATGCTAGACATTAAAG
* *
502798 TGCTATTTACTATGCTAGATATTAAAG
1 TGCTATTTACAATGCTAGACATTAAAG
*
502825 TACTATTTAC
1 TGCTATTTAC
502835 CTTTGGAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (27 bp):
TGCTATTTACAATGCTAGACATTAAAG
Found at i:503360 original size:20 final size:21
Alignment explanation
Indices: 503335--503375 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
503325 GATAAACCAA
* *
503335 TTTAGATTTTGGTG-AGATTT
1 TTTAGAATTTGATGAAGATTT
503355 TTTAGAATTTGATGAAGATTT
1 TTTAGAATTTGATGAAGATTT
503376 AATTGGAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (21 bp):
TTTAGAATTTGATGAAGATTT
Found at i:503439 original size:12 final size:12
Alignment explanation
Indices: 503414--503452 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
503404 AAAGGAGATG
503414 AAAGAAGAGTAGAA
1 AAAGAA-AG-AGAA
503428 AAAGAAAGAGAA
1 AAAGAAAGAGAA
*
503440 AGAGAAAGAGAA
1 AAAGAAAGAGAA
503452 A
1 A
503453 TAAAGGGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 16 0.67
13 2 0.08
14 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (12 bp):
AAAGAAAGAGAA
Found at i:504046 original size:156 final size:155
Alignment explanation
Indices: 503810--504094 Score: 389
Period size: 156 Copynumber: 1.8 Consensus size: 155
503800 GAATAAATAT
* *
503810 TAATTATCCAATGATGGAATTTTAAAAAATTTCAAATGATAAATTTCTATAAAATTCTTAGGTGA
1 TAATTATCCAATGATGGAATCTTAAAAAATTTCAAATGATAAATTTCTATAAAAATCTTAGGTGA
* * * * *
503875 GAAATTTTTTCTAAATTTGTCCCAAATGGTGGAATAATTTAGATAAAATTTCAATAACAATAATT
66 GAAATTTCTTCTAAATTTGTCCCAAATGGTGAAAT-ATTTAAATAAAATTTCAAGAAAAATAATT
503940 AATATTTTTTAGTTGAAAATATTTGA
130 AATATTTTTTAGTTGAAAATATTTGA
* * *
503966 TAATTATCCAATGATGAGACTCTT-AGAAATTTCAAATTG-TAAGTTTTCTA-AAAAATCTATAG
1 TAATTATCCAATGATG-GAATCTTAAAAAATTTCAAA-TGATAA-ATTTCTATAAAAATCT-TAG
* *
504028 GTGAGAAATTTCTT-TAAATTTGTCCCGAATGGTGAAATATTTAAATGAAATTTCAAGAAAAATA
62 GTGAGAAATTTCTTCTAAATTTGTCCCAAATGGTGAAATATTTAAATAAAATTTCAAGAAAAATA
504092 ATT
127 ATT
504095 GTTATATTAT
Statistics
Matches: 113, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
155 25 0.22
156 59 0.52
157 29 0.26
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (155 bp):
TAATTATCCAATGATGGAATCTTAAAAAATTTCAAATGATAAATTTCTATAAAAATCTTAGGTGA
GAAATTTCTTCTAAATTTGTCCCAAATGGTGAAATATTTAAATAAAATTTCAAGAAAAATAATTA
ATATTTTTTAGTTGAAAATATTTGA
Found at i:508090 original size:8 final size:8
Alignment explanation
Indices: 508064--508177 Score: 99
Period size: 8 Copynumber: 14.1 Consensus size: 8
508054 TTACTAATGG
508064 ATGAAAAA
1 ATGAAAAA
*
508072 AT-AAGAA
1 ATGAAAAA
508079 ATGAAAAA
1 ATGAAAAA
508087 ATGAAAAA
1 ATGAAAAA
*
508095 AT-AAGAAG
1 ATGAA-AAA
508103 A-GAAAGAA
1 ATGAAA-AA
508111 ATGAAAAAA
1 ATG-AAAAA
*
508120 ATGAAAAG
1 ATGAAAAA
*
508128 ATGAAATA
1 ATGAAAAA
508136 ATGAAAAA
1 ATGAAAAA
*
508144 ATAAAAAA
1 ATGAAAAA
*
508152 ATTAAAAAA
1 A-TGAAAAA
*
508161 AGGAAAAA
1 ATGAAAAA
*
508169 AAGAAAAA
1 ATGAAAAA
508177 A
1 A
508178 AAAGAAAAGG
Statistics
Matches: 87, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
7 9 0.10
8 61 0.70
9 14 0.16
10 3 0.03
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (8 bp):
ATGAAAAA
Found at i:508159 original size:41 final size:41
Alignment explanation
Indices: 508077--508191 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 41
508067 AAAAAATAAG
* *
508077 AAATGAAAAAATGAAAAAATAAGAAGAGAAAGAAATGAAAA
1 AAATGAAAAAATGAAAAAATAAGAAAAGAAAAAAATGAAAA
* * * *
508118 AAATGAAAAGATGAAATAATGAA-AAAATAAAAAAATTAAAA
1 AAATGAAAAAATGAAAAAAT-AAGAAAAGAAAAAAATGAAAA
* * * *
508159 AAAGGAAAAAAAGAAAAAAAAAGAAAAGGAAAA
1 AAATGAAAAAATGAAAAAATAAGAAAAGAAAAA
508192 CTCAAATTGA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
40 2 0.03
41 55 0.93
42 2 0.03
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.10
Consensus pattern (41 bp):
AAATGAAAAAATGAAAAAATAAGAAAAGAAAAAAATGAAAA
Found at i:508160 original size:18 final size:18
Alignment explanation
Indices: 508139--508185 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
508129 TGAAATAATG
* **
508139 AAAAAATAAAAAAATTAA
1 AAAAAAGAAAAAAAGAAA
*
508157 AAAAAGGAAAAAAAGAAA
1 AAAAAAGAAAAAAAGAAA
508175 AAAAAAGAAAA
1 AAAAAAGAAAA
508186 GGAAAACTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (18 bp):
AAAAAAGAAAAAAAGAAA
Found at i:508168 original size:49 final size:48
Alignment explanation
Indices: 508066--508176 Score: 118
Period size: 49 Copynumber: 2.3 Consensus size: 48
508056 ACTAATGGAT
* * *
508066 GAAAAAAT-AAGAAATGAAAAAATGAAAAAATAAGAAGAGAAAGAAATG
1 GAAAAAATGAA-AAATGAAAAAATGAAAAAATAAAAAAAGAAAGAAAAG
* * *
508114 AAAAAAATGAAAAGATGAAATAATGAAAAAATAAAAAAATTAAA-AAAAG
1 GAAAAAATGAAAA-ATGAAAAAATGAAAAAATAAAAAAA-GAAAGAAAAG
*
508163 GAAAAAAAGAAAAA
1 GAAAAAATGAAAAA
508177 AAAAGAAAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
48 10 0.19
49 39 0.75
50 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (48 bp):
GAAAAAATGAAAAATGAAAAAATGAAAAAATAAAAAAAGAAAGAAAAG
Done.