Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 36 of 106
Found at i:6701939 original size:21 final size:20
Alignment explanation
Indices: 6701915--6701960 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
6701905 TGATCCTTAG
*
6701915 AATATATTTAAAAAATAAAAA
1 AATATATATAAAAAA-AAAAA
* *
6701936 AATAAATATAAAAAAAATAA
1 AATATATATAAAAAAAAAAA
6701956 AATAT
1 AATAT
6701961 GTGTCATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AATATATATAAAAAAAAAAA
Found at i:6701948 original size:12 final size:11
Alignment explanation
Indices: 6701924--6701957 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
6701914 GAATATATTT
6701924 AAAAAATAAAA
1 AAAAAATAAAA
*
6701935 AAATAAATATAA
1 AAA-AAATAAAA
6701947 AAAAAATAAAA
1 AAAAAATAAAA
6701958 TATGTGTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAATAAAA
Found at i:6702319 original size:8 final size:7
Alignment explanation
Indices: 6702285--6702317 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
6702275 TTTATATATT
6702285 TATAATC
1 TATAATC
6702292 TATAATC
1 TATAATC
6702299 TAT-ATC
1 TATAATC
6702305 TATAAATC
1 TAT-AATC
6702313 TATAA
1 TATAA
6702318 ATAATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 12 0.50
8 6 0.25
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (7 bp):
TATAATC
Found at i:6708477 original size:27 final size:28
Alignment explanation
Indices: 6708414--6708487 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 28
6708404 ATGTGATTTC
6708414 TTTTATTTTTTAA-TTT-ATATATAAAA
1 TTTTATTTTTTAATTTTAATATATAAAA
* * * *
6708440 TATAATCTTTTAATTTTAATATAT-GAA
1 TTTTATTTTTTAATTTTAATATATAAAA
*
6708467 TTTTATTTTTTAATTTAAATA
1 TTTTATTTTTTAATTTTAATA
6708488 ATTTTTATAT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
26 10 0.26
27 22 0.58
28 6 0.16
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (28 bp):
TTTTATTTTTTAATTTTAATATATAAAA
Found at i:6710912 original size:190 final size:190
Alignment explanation
Indices: 6710589--6710970 Score: 561
Period size: 190 Copynumber: 2.0 Consensus size: 190
6710579 TGGGGCCCTG
*** * * * *
6710589 GGACCAGAGATTGTATTGTTTCACCTTCCATCCGTTTGTCATACCAAAAACTGGTGTTTGGCCCA
1 GGACCAGAGATCACATTGTTTCACCTTCAATCCATTTGTCATACCAAAAACTGATGTTTGCCCCA
* *
6710654 TTTCGAATAACCCAACCAAGACTTCTTTCGAGGATAGGACTTGCCCACTTCATCACTTTCCATGT
66 TTTCGAATAACCCAACCAAGACTTCTTTCGAGGATAAGACCTGCCCACTTCATCACTTTCCATGT
* **
6710719 TATTGAGGGGTTTTATTTTAGTTTTTGATTATCCTCACTATTCGGATACTTAGCTTGAAT
131 TATTGAGGGGTTTTATTTTAGTTTTTAATTATCCTCACTATTCAAATACTTAGCTTGAAT
6710779 GGACCAGAGATCACATTGTTTCACCCTT-AATCCATTTGTCATACCAAAAA-TCGATGTTTGCCC
1 GGACCAGAGATCACATTGTTTCA-CCTTCAATCCATTTGTCATACCAAAAACT-GATGTTTGCCC
* * * *
6710842 CATTTTGAATAACCCAACCAAGACTTTTTTTGAGGATAAGACCTGCCCATTTCATCACTTTCCAT
64 CATTTCGAATAACCCAACCAAGACTTCTTTCGAGGATAAGACCTGCCCACTTCATCACTTTCCAT
* * *
6710907 GTTATTGAGGGGTTTTGTTTTGGTTTTTAATTATCCTTACTATTCAAATACTTAGCTTGAAT
129 GTTATTGAGGGGTTTTATTTTAGTTTTTAATTATCCTCACTATTCAAATACTTAGCTTGAAT
6710969 GG
1 GG
6710971 TTAAGGCCTA
Statistics
Matches: 171, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
189 1 0.01
190 166 0.97
191 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.37
Consensus pattern (190 bp):
GGACCAGAGATCACATTGTTTCACCTTCAATCCATTTGTCATACCAAAAACTGATGTTTGCCCCA
TTTCGAATAACCCAACCAAGACTTCTTTCGAGGATAAGACCTGCCCACTTCATCACTTTCCATGT
TATTGAGGGGTTTTATTTTAGTTTTTAATTATCCTCACTATTCAAATACTTAGCTTGAAT
Found at i:6716578 original size:171 final size:171
Alignment explanation
Indices: 6716264--6716599 Score: 471
Period size: 172 Copynumber: 2.0 Consensus size: 171
6716254 ACTCAAAATT
**
6716264 TTTGCCAACAAATAAAAACTCCTTTTTGTAACCAATTGCAAGTGATAAGACGCTATCATTGATGT
1 TTTGCCAACAAATAAAAACTCCTTCATGTAACCAATTGCAAGTGATAAGACGCTATCATTGATGT
* * * *
6716329 CTATCAACCACTTTCTTTACATCTAGAGCCTTTATCTTCAACAACCTAGAATCAATAGTCATGAA
66 CCATCAACCACTTTCTTTACATCTAGAACCTTTATCTTCAACAACCTAAAATCAATAATCATGAA
*
6716394 TTAAAAAGTAGATAAAATTTAAAAAAAAAAACAAAAGCCATG
131 CTAAAAAGTAGATAAAATTT-AAAAAAAAAACAAAAGCCATG
* * * * ** *
6716436 TTTGCCTACACATGAAAACTCCTTCATGTAACTAATTGCAAGTGATAAGGTGCTATC-TCTGGTG
1 TTTGCCAACAAATAAAAACTCCTTCATGTAACCAATTGCAAGTGATAAGACGCTATCAT-TGATG
* *
6716500 TCCATCAGCCATTTTCTTTACATCTAGAACC-TTATCTT-AAGCAACCTAAAATCAATAATCATG
65 TCCATCAACCACTTTCTTTACATCTAGAACCTTTATCTTCAA-CAACCTAAAATCAATAATCATG
*
6716563 AACTAAAAAGTAGATAAAATTTAAAAGAAAAACAAAA
129 AACTAAAAAGTAGATAAAATTTAAAAAAAAAACAAAA
6716600 ATATTCAATT
Statistics
Matches: 145, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
170 16 0.11
171 49 0.34
172 80 0.55
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (171 bp):
TTTGCCAACAAATAAAAACTCCTTCATGTAACCAATTGCAAGTGATAAGACGCTATCATTGATGT
CCATCAACCACTTTCTTTACATCTAGAACCTTTATCTTCAACAACCTAAAATCAATAATCATGAA
CTAAAAAGTAGATAAAATTTAAAAAAAAAACAAAAGCCATG
Found at i:6717601 original size:3 final size:3
Alignment explanation
Indices: 6717593--6717618 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6717583 GACCTCCCAA
6717593 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
6717619 CAACAACAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6719406 original size:34 final size:34
Alignment explanation
Indices: 6719361--6719457 Score: 126
Period size: 34 Copynumber: 2.8 Consensus size: 34
6719351 AAAATTATAT
*
6719361 TGCATTCTCAAAAATGGATTTCTGAGAATGCAA-A
1 TGCATTCTCAAAAATGAATTT-TGAGAATGCAATA
*
6719395 TGCATTTTCAAAAATGAATTTTGAAGAATGCAATA
1 TGCATTCTCAAAAATGAATTTTG-AGAATGCAATA
*
6719430 T-AATTCTCAAAAATGAATTTTCGAGAAT
1 TGCATTCTCAAAAATGAATTTT-GAGAAT
6719458 TATATTGCAT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
33 2 0.04
34 51 0.91
35 3 0.05
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.33
Consensus pattern (34 bp):
TGCATTCTCAAAAATGAATTTTGAGAATGCAATA
Found at i:6720455 original size:31 final size:31
Alignment explanation
Indices: 6720417--6720480 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
6720407 AGATTATTAC
6720417 ACCCTTGAATGGAAAATAACTTAAAATACTT
1 ACCCTTGAATGGAAAATAACTTAAAATACTT
* *
6720448 ACCCTTGAATGGAAAATAACTTTAAGTACTT
1 ACCCTTGAATGGAAAATAACTTAAAATACTT
6720479 AC
1 AC
6720481 TTTGGGAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (31 bp):
ACCCTTGAATGGAAAATAACTTAAAATACTT
Found at i:6720828 original size:31 final size:31
Alignment explanation
Indices: 6720790--6720848 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
6720780 TATTACACCC
6720790 TTGAATGGAAAATAACTTAAAATACTTACCG
1 TTGAATGGAAAATAACTTAAAATACTTACCG
* *
6720821 TTGAATGGAAAATAACTTCAAGTACTTA
1 TTGAATGGAAAATAACTTAAAATACTTA
6720849 GTTTGGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.31
Consensus pattern (31 bp):
TTGAATGGAAAATAACTTAAAATACTTACCG
Found at i:6723152 original size:6 final size:6
Alignment explanation
Indices: 6723118--6723197 Score: 70
Period size: 6 Copynumber: 13.2 Consensus size: 6
6723108 TTTTCTTTTG
* * * * * * *
6723118 ACAACA ACAACA ACAATA ATAACA ACAATA ACAATA ATAATA ATAACA
1 ACAATA ACAATA ACAATA ACAATA ACAATA ACAATA ACAATA ACAATA
* *
6723166 ATAATA ATAATAA ACAATA ACAATA ACAATA A
1 ACAATA ACAAT-A ACAATA ACAATA ACAATA A
6723198 TAATCATTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
6 59 0.92
7 5 0.08
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
ACAATA
Found at i:6723156 original size:3 final size:3
Alignment explanation
Indices: 6723132--6723201 Score: 68
Period size: 3 Copynumber: 23.0 Consensus size: 3
6723122 CAACAACAAC
* * * * *
6723132 AAT AAT AAC AAC AAT AAC AAT AAT AAT AAT AAC AAT AAT AAT AAT AAAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* *
6723181 AAT AAC AAT AAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
6723202 CATTTAACTA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
3 52 0.96
4 2 0.04
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:6724299 original size:15 final size:16
Alignment explanation
Indices: 6724275--6724308 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
6724265 TTAGAAAAGT
*
6724275 AAAGATAAGGAAAGAA
1 AAAGATAAGGAAACAA
6724291 AAAGA-AAGGAAACAA
1 AAAGATAAGGAAACAA
6724306 AAA
1 AAA
6724309 TTTTATTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.74, C:0.03, G:0.21, T:0.03
Consensus pattern (16 bp):
AAAGATAAGGAAACAA
Found at i:6729579 original size:6 final size:6
Alignment explanation
Indices: 6729568--6729599 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
6729558 TTGAAATACA
6729568 AAAATG AAAATG AAAATG -AAATG AAAATG AAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAA
6729600 GAAAAATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:6729591 original size:11 final size:11
Alignment explanation
Indices: 6729568--6729604 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
6729558 TTGAAATACA
6729568 AAAATGAAAATG
1 AAAATG-AAATG
6729580 AAAATGAAATG
1 AAAATGAAATG
6729591 AAAATGAAA-G
1 AAAATGAAATG
6729601 AAAA
1 AAAA
6729605 ATTGATGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 5 0.20
11 14 0.56
12 6 0.24
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (11 bp):
AAAATGAAATG
Found at i:6729606 original size:17 final size:16
Alignment explanation
Indices: 6729567--6729606 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6729557 CTTGAAATAC
6729567 AAAAATGAAAATGAAA
1 AAAAATGAAAATGAAA
*
6729583 ATGAAATGAAAATGAAA
1 A-AAAATGAAAATGAAA
6729600 GAAAAAT
1 -AAAAAT
6729607 TGATGGCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 18 0.90
18 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (16 bp):
AAAAATGAAAATGAAA
Found at i:6730004 original size:25 final size:24
Alignment explanation
Indices: 6729976--6730026 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
6729966 AAAACAAGGT
*
6729976 AAAAAAAAAACAAAAAATTAAAAAA
1 AAAAAAAAAACAAAAAA-GAAAAAA
* * *
6730001 AAAACAATAAGAAAAAAGAAAAAA
1 AAAAAAAAAACAAAAAAGAAAAAA
6730025 AA
1 AA
6730027 GAAAGACTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.86, C:0.04, G:0.04, T:0.06
Consensus pattern (24 bp):
AAAAAAAAAACAAAAAAGAAAAAA
Found at i:6730028 original size:16 final size:17
Alignment explanation
Indices: 6729976--6730030 Score: 51
Period size: 19 Copynumber: 3.2 Consensus size: 17
6729966 AAAACAAGGT
* *
6729976 AAAAAAAAAACAAAAAATT
1 AAAAAAAAAAC-AATAA-G
6729995 AAAAAAAAAACAATAAG
1 AAAAAAAAAACAATAAG
6730012 AAAAAAGAAAA-AA-AAG
1 AAAAAA-AAAACAATAAG
6730028 AAA
1 AAA
6730031 GACTCGAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
18 8 0.24
19 11 0.33
ACGTcount: A:0.85, C:0.04, G:0.05, T:0.05
Consensus pattern (17 bp):
AAAAAAAAAACAATAAG
Found at i:6731251 original size:86 final size:85
Alignment explanation
Indices: 6731075--6731322 Score: 209
Period size: 86 Copynumber: 2.9 Consensus size: 85
6731065 AAACTTGGAG
* * * * * * *
6731075 TCTTGCGAATCTTTCTTTCTTGTGAATCTGAAAATGC-TTGCAAACCTTGTATCTTTACAAATCT
1 TCTTGCAAATCTTTATTTCTTGTGAATCTG-AAAT-CTTTGCGAACCTTGAACCTTTGCAAAACT
*
6731139 AG-AATCTTTGCGAAACTTAAAA
64 TGAAATC-TTGCGAAACTTAAAA
* *
6731161 TCTTGCAAATCTTTATTTCTTGCGAATCTGAAAGTCTTTGCGAACCTTGCACCTTTGCAAAACTT
1 TCTTGCAAATCTTTATTTCTTGTGAATCTGAAA-TCTTTGCGAACCTTGAACCTTTGCAAAACTT
* ****
6731226 GAAATCTTGCGAAAGTTTCTT
65 GAAATCTTGCGAAACTTAAAA
** * * * **
6731247 TCTTG-AGAATCTAAAATTCTTTGTGAACCTGAAATCTTTGCGAATC-T-AACCTTTGTGAAACT
1 TCTTGCA-AATCTTTATTTC-TTGTGAATCTGAAATCTTTGCGAACCTTGAACCTTTGCAAAACT
6731309 TGAAATCTTGCGAA
64 TGAAATCTTGCGAA
6731323 TCGTTCTTTC
Statistics
Matches: 134, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
84 26 0.19
85 6 0.04
86 86 0.64
87 16 0.12
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (85 bp):
TCTTGCAAATCTTTATTTCTTGTGAATCTGAAATCTTTGCGAACCTTGAACCTTTGCAAAACTTG
AAATCTTGCGAAACTTAAAA
Found at i:6731269 original size:69 final size:69
Alignment explanation
Indices: 6731144--6731276 Score: 178
Period size: 69 Copynumber: 1.9 Consensus size: 69
6731134 AATCTAGAAT
* * *
6731144 CTTTGCGAAACTTAAAATCTTGCAAATCTTTATTTCTTGCGAATCTGAAAGTCTTTGCGAACCTT
1 CTTTGCAAAACTTAAAATCTTGCAAATCTTTATTTCTTGAGAATCTAAAAGTCTTTGCGAACCTT
6731209 GCAC
66 GCAC
* * * * *
6731213 CTTTGCAAAACTTGAAATCTTGCGAAA-GTTTCTTTCTTGAGAATCTAAAATTCTTTGTGAACCT
1 CTTTGCAAAACTTAAAATCTTGC-AAATCTTTATTTCTTGAGAATCTAAAAGTCTTTGCGAACCT
6731277 GAAATCTTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 52 0.95
70 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (69 bp):
CTTTGCAAAACTTAAAATCTTGCAAATCTTTATTTCTTGAGAATCTAAAAGTCTTTGCGAACCTT
GCAC
Found at i:6731286 original size:69 final size:69
Alignment explanation
Indices: 6731140--6731287 Score: 174
Period size: 69 Copynumber: 2.1 Consensus size: 69
6731130 TACAAATCTA
* * *
6731140 GAATCTTTGCGAAACTTAAAATCTTGCAAATCTTTATTTCTTGCGAATCTGAAAGTCTTTGCGAA
1 GAATCTTTGCAAAACTTAAAATCTTGCAAATCTTTATTTCTTGAGAATCTAAAAGTCTTTGCGAA
6731205 CCTT
66 CCTT
* * * * * * *
6731209 GCACCTTTGCAAAACTTGAAATCTTGCGAAA-GTTTCTTTCTTGAGAATCTAAAATTCTTTGTGA
1 GAATCTTTGCAAAACTTAAAATCTTGC-AAATCTTTATTTCTTGAGAATCTAAAAGTCTTTGCGA
6731273 ACC-T
65 ACCTT
6731277 GAAATCTTTGC
1 G-AATCTTTGC
6731288 GAATCTAACC
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
68 2 0.03
69 60 0.92
70 3 0.05
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (69 bp):
GAATCTTTGCAAAACTTAAAATCTTGCAAATCTTTATTTCTTGAGAATCTAAAAGTCTTTGCGAA
CCTT
Found at i:6731473 original size:18 final size:17
Alignment explanation
Indices: 6731424--6731509 Score: 91
Period size: 18 Copynumber: 4.9 Consensus size: 17
6731414 ATTTCTTATG
* *
6731424 AATCTGAAAGTCTTTACA
1 AATCTGAAA-CCTTTGCA
*
6731442 AACCTGAAACCTTTGCA
1 AATCTGAAACCTTTGCA
6731459 AATCTGAAGACCTTTGCA
1 AATCTGAA-ACCTTTGCA
*
6731477 AATCTGAAAGCCTTTGTA
1 AATCTGAAA-CCTTTGCA
* *
6731495 AATCTTAAATCTTTG
1 AATCTGAAACCTTTG
6731510 TTAAACTTGG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
17 19 0.32
18 40 0.68
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (17 bp):
AATCTGAAACCTTTGCA
Found at i:6731485 original size:86 final size:84
Alignment explanation
Indices: 6731211--6731478 Score: 304
Period size: 86 Copynumber: 3.1 Consensus size: 84
6731201 CGAACCTTGC
** * **
6731211 ACCTTTGCAAAACTTGAAATCTTGCGAAAGTTTCTTTCTTGAGAATCTAAAATTCTTTGTGAACC
1 ACCTTTGCAAAACTTGAAATCTTGCGAATCTTTCTTTCTT-AGAATCTAAAAGTCTTTACGAACC
*
6731276 TGAAATCTTTGCGAATCT-A
65 TGAAATCTTTGCAAATCTAA
** * ** *
6731295 ACCTTTGTGAAACTTGAAATCTTGCGAATCGTTCTTTCCTGCGAATCTAAAAGTCTTTACGAACT
1 ACCTTTGCAAAACTTGAAATCTTGCGAATCTTTCTTT-CTTAGAATCTAAAAGTCTTTACGAACC
* *
6731360 TAAAATCTTTGTAAATCTAAA
65 TGAAATCTTTGCAAATCT-AA
* * * *
6731381 ACTTTTGCAAAACTTGAAATCTTGCGAATCTTTATTTCTTATGAATCTGAAAGTCTTTACAAACC
1 ACCTTTGCAAAACTTGAAATCTTGCGAATCTTTCTTTCTTA-GAATCTAAAAGTCTTTACGAACC
*
6731446 TGAAACCTTTGCAAATCTGAA
65 TGAAATCTTTGCAAATCT-AA
6731467 GACCTTTGCAAA
1 -ACCTTTGCAAA
6731479 TCTGAAAGCC
Statistics
Matches: 150, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
84 66 0.44
85 4 0.03
86 70 0.47
87 10 0.07
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (84 bp):
ACCTTTGCAAAACTTGAAATCTTGCGAATCTTTCTTTCTTAGAATCTAAAAGTCTTTACGAACCT
GAAATCTTTGCAAATCTAA
Found at i:6731509 original size:35 final size:34
Alignment explanation
Indices: 6731424--6731509 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 34
6731414 ATTTCTTATG
*
6731424 AATCTGAAAGTCTTTACAAACCTGAAACCTTTGCA
1 AATCTGAAA-TCTTTGCAAACCTGAAACCTTTGCA
* * *
6731459 AATCTGAAGACCTTTGCAAATCTGAAAGCCTTTGTA
1 AATCTGAA-ATCTTTGCAAACCTGAAA-CCTTTGCA
*
6731495 AATCTTAAATCTTTG
1 AATCTGAAATCTTTG
6731510 TTAAACTTGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
35 28 0.65
36 15 0.35
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (34 bp):
AATCTGAAATCTTTGCAAACCTGAAACCTTTGCA
Found at i:6732122 original size:14 final size:15
Alignment explanation
Indices: 6732088--6732135 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
6732078 TAAGAAAAGT
* *
6732088 TTTAATTTTAATTTGA
1 TTTAATTTT-GTTTAA
*
6732104 TTTAA-TTTGTTTTA
1 TTTAATTTTGTTTAA
6732118 TTTAATTTTGTTTAA
1 TTTAATTTTGTTTAA
6732133 TTT
1 TTT
6732136 TACTTGTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 9 0.32
15 14 0.50
16 5 0.18
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (15 bp):
TTTAATTTTGTTTAA
Found at i:6733273 original size:35 final size:35
Alignment explanation
Indices: 6733234--6733309 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
6733224 GATCCAACTC
*
6733234 ATTTTGTAAGTTT-C-TTTTTTATTTTATTTTTATTT
1 ATTTTGT-AGTTTACTTTTTTTA-TTTATTTTTAATT
* *
6733269 ATTTTATATTTTACTTTTTTTATTTATTTTTAATT
1 ATTTTGTAGTTTACTTTTTTTATTTATTTTTAATT
6733304 -TTTTGT
1 ATTTTGT
6733310 TTCATGTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 9 0.26
35 19 0.54
36 7 0.20
ACGTcount: A:0.18, C:0.03, G:0.04, T:0.75
Consensus pattern (35 bp):
ATTTTGTAGTTTACTTTTTTTATTTATTTTTAATT
Found at i:6733289 original size:16 final size:15
Alignment explanation
Indices: 6733251--6733347 Score: 73
Period size: 16 Copynumber: 6.5 Consensus size: 15
6733241 AAGTTTCTTT
6733251 TTTATTTTATTTTTA
1 TTTATTTTATTTTTA
6733266 TTTATTTTATATTTTA
1 TTTATTTTAT-TTTTA
6733282 CTTT-TTTTATTTATT-
1 -TTTATTTTATTT-TTA
6733297 TTTAATTTT-TTGTTTCA
1 TTT-ATTTTATT-TTT-A
*
6733314 TGTATTTTA-TTTTA
1 TTTATTTTATTTTTA
*
6733328 TTT-TGTTA--TTTA
1 TTTATTTTATTTTTA
6733340 TTTATTTT
1 TTTATTTT
6733348 TGCCGAGTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 22
0.72 0.04 0.23
Matches are distributed among these distances:
12 7 0.10
13 7 0.10
14 6 0.09
15 19 0.28
16 24 0.35
17 5 0.07
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTATTTTATTTTTA
Found at i:6736040 original size:34 final size:34
Alignment explanation
Indices: 6735997--6736065 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
6735987 GCGATTATGA
6735997 TAAAACCGGTGCTAATTATTAGTTTGATTCATAC
1 TAAAACCGGTGCTAATTATTAGTTTGATTCATAC
6736031 TAAAACCGGTGCTAATTATTAGTTTGATTCATAC
1 TAAAACCGGTGCTAATTATTAGTTTGATTCATAC
6736065 T
1 T
6736066 CTTACTTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (34 bp):
TAAAACCGGTGCTAATTATTAGTTTGATTCATAC
Found at i:6741306 original size:15 final size:17
Alignment explanation
Indices: 6741277--6741308 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
6741267 TAAAAATTTT
6741277 AAACTTTAAATCTTTAA
1 AAACTTTAAATCTTTAA
6741294 AAAC-TTAAA-CTTTAA
1 AAACTTTAAATCTTTAA
6741309 TATATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (17 bp):
AAACTTTAAATCTTTAA
Found at i:6741786 original size:25 final size:24
Alignment explanation
Indices: 6741758--6741809 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
6741748 TTAAATTAAT
* *
6741758 ATTATCATTAGTAAAATAAAAGATA
1 ATTATCATCAATAAAATAAAA-ATA
* *
6741783 ATTATTATCAATAAAATATAAATA
1 ATTATCATCAATAAAATAAAAATA
6741807 ATT
1 ATT
6741810 TTGGTAAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (24 bp):
ATTATCATCAATAAAATAAAAATA
Found at i:6741852 original size:57 final size:54
Alignment explanation
Indices: 6741769--6741874 Score: 149
Period size: 57 Copynumber: 1.9 Consensus size: 54
6741759 TTATCATTAG
* *
6741769 TAAAATAAAAGATAATTATTATCAATAAAATATAAATAATTTTGGTAAGGAGTAAAA
1 TAAAAAAAAAGATAATTATTATCAATAAAATAT--AT-ATTTTCGTAAGGAGTAAAA
* *
6741826 TAAAAAAAAATATAGTTATTATCAATAAAATATATATTTTCGTAAGGAG
1 TAAAAAAAAAGATAATTATTATCAATAAAATATATATTTTCGTAAGGAG
6741875 AATTTATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 13 0.29
55 2 0.04
57 30 0.67
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.33
Consensus pattern (54 bp):
TAAAAAAAAAGATAATTATTATCAATAAAATATATATTTTCGTAAGGAGTAAAA
Found at i:6742904 original size:3 final size:3
Alignment explanation
Indices: 6742896--6742920 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6742886 GTCTTTATAT
6742896 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
6742921 AGTAATCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6747938 original size:20 final size:20
Alignment explanation
Indices: 6747913--6747951 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6747903 ATGACATCTA
**
6747913 ATATCATGCTTATTATTTTT
1 ATATCATGCCCATTATTTTT
6747933 ATATCATGCCCATTATTTT
1 ATATCATGCCCATTATTTT
6747952 GCAGGTGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.05, T:0.54
Consensus pattern (20 bp):
ATATCATGCCCATTATTTTT
Found at i:6751218 original size:15 final size:15
Alignment explanation
Indices: 6751198--6751231 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
6751188 AATATGTAGC
*
6751198 CTATCATAAAATATT
1 CTATCATAAAATAGT
6751213 CTATCATAAAATAGT
1 CTATCATAAAATAGT
6751228 CTAT
1 CTAT
6751232 GTCATTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (15 bp):
CTATCATAAAATAGT
Found at i:6752203 original size:41 final size:40
Alignment explanation
Indices: 6752124--6752233 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 40
6752114 AAAAAACACA
* * * * * *
6752124 TTAATTGATGATCATTTAAGGCATTTGATGAAGAAAATGCT
1 TTAAATGATCATCAATTAAGGCATTT-CTAAAGAAAATGCC
*
6752165 TTAAATGATCATCAATTAAGGCGTTTCTAAAGAGAAATGCC
1 TTAAATGATCATCAATTAAGGCATTTCTAAAGA-AAATGCC
* * *
6752206 TTAATTGATGATTAATTAAGGCATTTCT
1 TTAAATGATCATCAATTAAGGCATTTCT
6752234 TTCTTGGAAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 5 0.09
41 52 0.91
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (40 bp):
TTAAATGATCATCAATTAAGGCATTTCTAAAGAAAATGCC
Found at i:6753692 original size:24 final size:25
Alignment explanation
Indices: 6753651--6753698 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
6753641 TAAATTTTTG
* *
6753651 TTTTTAAATTTTTATTTACTTTAAC
1 TTTTTAAATTATTATTTACCTTAAC
*
6753676 TTTTTATATTATT-TTTACCTTAA
1 TTTTTAAATTATTATTTACCTTAA
6753699 TTAGTTCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTTTAAATTATTATTTACCTTAAC
Found at i:6754303 original size:2 final size:2
Alignment explanation
Indices: 6754272--6754322 Score: 66
Period size: 2 Copynumber: 25.5 Consensus size: 2
6754262 TTCCTATAAA
* * * *
6754272 AT AT AA AT AT AA AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6754314 AT AT AT AT A
1 AT AT AT AT A
6754323 GGGATCCACT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:6757443 original size:34 final size:33
Alignment explanation
Indices: 6757400--6757492 Score: 96
Period size: 34 Copynumber: 2.7 Consensus size: 33
6757390 CTTGTACGTC
6757400 CACCCTTGAGCCCGTGCCTTTCTTCCCATGTCTT
1 CACCCTTGAGCCCGTGCCTTTCTTCCC-TGTCTT
* * **
6757434 CACCCTTGAGCCCATGCCATTCTTTTCTGTCTT
1 CACCCTTGAGCCCGTGCCTTTCTTCCCTGTCTT
** *
6757467 TGCCCTTTAGCCCGTGCTCTTCTCTT
1 CACCCTTGAGCCCGTGC-CTT-TCTT
6757493 GGTGCCACCC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
33 19 0.40
34 25 0.52
35 4 0.08
ACGTcount: A:0.09, C:0.39, G:0.14, T:0.39
Consensus pattern (33 bp):
CACCCTTGAGCCCGTGCCTTTCTTCCCTGTCTT
Found at i:6758092 original size:21 final size:21
Alignment explanation
Indices: 6758063--6758102 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6758053 ATTTAAGATT
* * *
6758063 ATTACAATTTAAATTTGAAAC
1 ATTAAAATTAAAAATTGAAAC
6758084 ATTAAAATTAAAAATTGAA
1 ATTAAAATTAAAAATTGAA
6758103 CACTTTTATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (21 bp):
ATTAAAATTAAAAATTGAAAC
Found at i:6763934 original size:31 final size:31
Alignment explanation
Indices: 6763896--6763955 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
6763886 TTTGTCTATG
6763896 TATCTGGATTGTAAGAGACCAAGCAACCTCA
1 TATCTGGATTGTAAGAGACCAAGCAACCTCA
*
6763927 TATCTGGATTGTAAGAGACTAAGCAACCT
1 TATCTGGATTGTAAGAGACCAAGCAACCT
6763956 TATGTATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (31 bp):
TATCTGGATTGTAAGAGACCAAGCAACCTCA
Found at i:6772666 original size:24 final size:25
Alignment explanation
Indices: 6772639--6772700 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
6772629 GAGGAACTTG
*
6772639 GAAAAGAATGAAAAAATTAA-AAAA
1 GAAAAGAATGAAAAAAATAAGAAAA
*
6772663 GAAAA-AATTAAAAAAATAATGAAAA
1 GAAAAGAATGAAAAAAATAA-GAAAA
*
6772688 CAAAAGAA-GAAAA
1 GAAAAGAATGAAAA
6772701 GCAAAAACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 12 0.39
24 5 0.16
25 12 0.39
26 2 0.06
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (25 bp):
GAAAAGAATGAAAAAAATAAGAAAA
Found at i:6772668 original size:15 final size:15
Alignment explanation
Indices: 6772648--6772677 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6772638 GGAAAAGAAT
6772648 GAAAAAATTAAAAAA
1 GAAAAAATTAAAAAA
6772663 GAAAAAATTAAAAAA
1 GAAAAAATTAAAAAA
6772678 ATAATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (15 bp):
GAAAAAATTAAAAAA
Found at i:6773913 original size:13 final size:13
Alignment explanation
Indices: 6773895--6773920 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6773885 GCCTAGCCAA
6773895 TTGGAGATTTTTT
1 TTGGAGATTTTTT
6773908 TTGGAGATTTTTT
1 TTGGAGATTTTTT
6773921 AGGACCTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (13 bp):
TTGGAGATTTTTT
Found at i:6774024 original size:15 final size:15
Alignment explanation
Indices: 6774006--6774041 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
6773996 AGATTATTTT
6774006 ATTTTATTTTCCTAC
1 ATTTTATTTTCCTAC
*
6774021 ATTTCA-TTTCCTAC
1 ATTTTATTTTCCTAC
6774035 ATTTTAT
1 ATTTTAT
6774042 ATTTTCTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTATTTTCCTAC
Found at i:6776274 original size:12 final size:12
Alignment explanation
Indices: 6776257--6776304 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
6776247 GCTTTTTATC
6776257 TTTATGGATATT
1 TTTATGGATATT
*
6776269 TTTATGGATGTGGAT
1 TTTATGGATAT---T
*
6776284 GTTATGGATATT
1 TTTATGGATATT
6776296 TTTATGGAT
1 TTTATGGAT
6776305 GTTATGAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
12 19 0.66
15 10 0.34
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (12 bp):
TTTATGGATATT
Found at i:6784289 original size:292 final size:292
Alignment explanation
Indices: 6783765--6784353 Score: 1124
Period size: 292 Copynumber: 2.0 Consensus size: 292
6783755 TGGCAATAAA
6783765 CACAAGCATTGTGAGCTTTAGTATTTGGCTATGGATGAAACAAACTTTTGACTTCATCACTAATT
1 CACAAGCATTGTGAGCTTTAGTATTTGGCTATGGATGAAACAAACTTTTGACTTCATCACTAATT
*
6783830 CTTCAATTAGCCAATTTTATGTTTATTAATCGTTATCAATGCTAGCTTTATTGTCATGACCCCCA
66 CTTCAATTAGCCAATTTTATGTTTATTAATCGTTATCAATGCCAGCTTTATTGTCATGACCCCCA
*
6783895 ATTGCTAAAAAAAAATCAATATAGCTTGACATCTTATCTGTAAATAATCTTAGTGAATAATTAAT
131 ATTGCTAAAAAAAAATCAATATAGCTTGACATCTTATCTATAAATAATCTTAGTGAATAATTAAT
6783960 ATTTTTTATCACATAGTATCTCTATTTTAACATTAGTATAGTTTTGCATTTACTTAATCTTGTTC
196 ATTTTTTATCACATAGTATCTCTATTTTAACATTAGTATAGTTTTGCATTTACTTAATCTTGTTC
6784025 AAACATGTTAAGTCTTGTCTTTGACATTAACT
261 AAACATGTTAAGTCTTGTCTTTGACATTAACT
6784057 CACAAGCATTGTGAGCTTTAGTATTTGGCTATGGATGAAACAAACTTTTGACTTCATCACTAATT
1 CACAAGCATTGTGAGCTTTAGTATTTGGCTATGGATGAAACAAACTTTTGACTTCATCACTAATT
*
6784122 CTTCAATTAGCCAATTTTATGTTTATTGATCGTTATCAATGCCAGCTTTATTGTCATGACCCCCA
66 CTTCAATTAGCCAATTTTATGTTTATTAATCGTTATCAATGCCAGCTTTATTGTCATGACCCCCA
*
6784187 ATTGCTAAAAAAAAATCAATATAGCTTGACATCTTATCTATGAATAATCTTAGTGAATAATTAAT
131 ATTGCTAAAAAAAAATCAATATAGCTTGACATCTTATCTATAAATAATCTTAGTGAATAATTAAT
*
6784252 ATTTTTTATCACATAGTATCTCTATTTTAACATTAGTATAGTTTTGCGTTTACTTAATCTTGTTC
196 ATTTTTTATCACATAGTATCTCTATTTTAACATTAGTATAGTTTTGCATTTACTTAATCTTGTTC
*
6784317 AACCATGTTAAGTCTTGTCTTTGACATTAACT
261 AAACATGTTAAGTCTTGTCTTTGACATTAACT
6784349 CACAA
1 CACAA
6784354 ATAAGCTTTA
Statistics
Matches: 291, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
292 291 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (292 bp):
CACAAGCATTGTGAGCTTTAGTATTTGGCTATGGATGAAACAAACTTTTGACTTCATCACTAATT
CTTCAATTAGCCAATTTTATGTTTATTAATCGTTATCAATGCCAGCTTTATTGTCATGACCCCCA
ATTGCTAAAAAAAAATCAATATAGCTTGACATCTTATCTATAAATAATCTTAGTGAATAATTAAT
ATTTTTTATCACATAGTATCTCTATTTTAACATTAGTATAGTTTTGCATTTACTTAATCTTGTTC
AAACATGTTAAGTCTTGTCTTTGACATTAACT
Found at i:6786652 original size:38 final size:38
Alignment explanation
Indices: 6786577--6786655 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
6786567 TACTAAAGTC
* * **
6786577 CATACTTGGTTTGCATACATGGATTCTATTTTAGATTT
1 CATACTTAGTTTGCATACATGGATTCCATTCCAGATTT
* *
6786615 CATACTTAGTTTGCATAGATGGATTCCATTCCGGATTT
1 CATACTTAGTTTGCATACATGGATTCCATTCCAGATTT
6786653 CAT
1 CAT
6786656 GGCCTTATGC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.43
Consensus pattern (38 bp):
CATACTTAGTTTGCATACATGGATTCCATTCCAGATTT
Found at i:6790396 original size:10 final size:10
Alignment explanation
Indices: 6790361--6790407 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
6790351 TAATATAATT
*
6790361 AAGAATCATC
1 AAGAATCTTC
*
6790371 AAGAAACTTC
1 AAGAATCTTC
6790381 AAGAATCTTC
1 AAGAATCTTC
6790391 AAGAAT-TTCC
1 AAGAATCTT-C
6790401 AAGAATC
1 AAGAATC
6790408 ATTCTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.06
10 30 0.94
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.23
Consensus pattern (10 bp):
AAGAATCTTC
Found at i:6800134 original size:22 final size:22
Alignment explanation
Indices: 6800095--6800137 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6800085 ACATAATTCT
* **
6800095 TATTGTAATTAAGTAATTATAG
1 TATTGTAATAAAAAAATTATAG
6800117 TATTGTAATAAAAAAATTATA
1 TATTGTAATAAAAAAATTATA
6800138 AATAAAATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (22 bp):
TATTGTAATAAAAAAATTATAG
Found at i:6800960 original size:2 final size:2
Alignment explanation
Indices: 6800953--6800987 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
6800943 AGCATACCAA
* *
6800953 AT AT AT AT AA AT AT AT AT AT AT AT AT TT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6800988 CACACACAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6801564 original size:2 final size:2
Alignment explanation
Indices: 6801559--6801590 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6801549 CACACACATA
6801559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6801591 CAATATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6802026 original size:2 final size:2
Alignment explanation
Indices: 6802019--6802061 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
6802009 ACACTTCACC
6802019 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6802061 A
1 A
6802062 AGAAAGTAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6802220 original size:2 final size:2
Alignment explanation
Indices: 6802213--6802239 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6802203 AATGAATTCT
6802213 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6802240 GAATGAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6803213 original size:18 final size:18
Alignment explanation
Indices: 6803192--6803251 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 18
6803182 TATTATTTTT
*
6803192 AATATAAATATAAAATTA
1 AATATAATTATAAAATTA
*
6803210 AATATATATTAAAAAATATA
1 AATATA-ATTATAAAAT-TA
6803230 TAA-ATAATTATAAAATTA
1 -AATATAATTATAAAATTA
6803248 AATA
1 AATA
6803252 AATAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 2 0.06
18 9 0.26
19 17 0.49
20 5 0.14
21 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AATATAATTATAAAATTA
Found at i:6803252 original size:20 final size:20
Alignment explanation
Indices: 6803195--6803263 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
6803185 TATTTTTAAT
* *
6803195 ATAAATATAAAATTAAATAT
1 ATAATTATAAAATTAAATAA
* *
6803215 AT-ATTA-AAAAATATATAA
1 ATAATTATAAAATTAAATAA
6803233 ATAATTATAAAATTAAATAA
1 ATAATTATAAAATTAAATAA
6803253 ATAATT-TAAAA
1 ATAATTATAAAA
6803264 AATTATTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
18 11 0.27
19 12 0.29
20 18 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAATTATAAAATTAAATAA
Found at i:6817061 original size:13 final size:14
Alignment explanation
Indices: 6817033--6817081 Score: 59
Period size: 13 Copynumber: 3.6 Consensus size: 14
6817023 AACTATTTTC
6817033 TAAAAATTAAAGAT
1 TAAAAATTAAAGAT
*
6817047 TAAAAATTAGA-AT
1 TAAAAATTAAAGAT
6817060 TAAAAATT-AAGA-
1 TAAAAATTAAAGAT
6817072 TAAATAATTA
1 TAAA-AATTA
6817082 GATGAGAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 5 0.17
13 15 0.50
14 10 0.33
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (14 bp):
TAAAAATTAAAGAT
Found at i:6817071 original size:26 final size:27
Alignment explanation
Indices: 6817033--6817083 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
6817023 AACTATTTTC
6817033 TAAAAATTAAAGATTAAA-AATTAGAAT
1 TAAAAATTAAAGA-TAAATAATTAGAAT
6817060 TAAAAATT-AAGATAAATAATTAGA
1 TAAAAATTAAAGATAAATAATTAGA
6817084 TGAGAAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 4 0.17
26 11 0.48
27 8 0.35
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
TAAAAATTAAAGATAAATAATTAGAAT
Found at i:6825859 original size:364 final size:352
Alignment explanation
Indices: 6825246--6826504 Score: 1203
Period size: 370 Copynumber: 3.5 Consensus size: 352
6825236 TTTTAAGAGA
* * * * * * * * *
6825246 AAATTAGTGAATGCATTTTTCTAGAATAAACGCCTTTACTAAACGTCTTAAAATTTCAGTTGTGA
1 AAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACCGTCCTAAAATTTGAGCTATGA
* * * * * ** **
6825311 AAAATTGAATGCGTTTTTTACT--AAAAGACGTCTTTAGTAATCTAAAAAATAAATTTCAA-AGG
66 AAAATTGAAGGCATTTTTCACTGGAAAATAC--CTTTAATAATCCCAAAAAT---TTT-AAGAAA
* * * * * * *
6825373 AAATTGTTAAAGGCGTTTGTTATAAAAAAAAATGCCTTCACTAATTATGTACATAAATTATTAAA
125 AAATTATTAAAGGCATTTATTCT--CAAAAAATGCCTTCACTAATTATGTACATAAATTAGTGAA
* * * * * * *
6825438 GGTATTTTTTTAGAACAAACGCCTTCACTAACCATCTTAAATTTTGAGTTGTGAAAAATTGAAGT
188 GGTATTTTTCTAAAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTATGAAAAATTGAAGG
* *
6825503 CATTTTTCACTGGAAGACGCCTTTAATAATCCCAAAAAATTTAAGAAAAAATTATTGAAGGCGTT
253 CATTTTTCACTAGAAAACGCCTTTAATAATCCCAAAAAATTTAAGAAAAAATTATTGAAGGCGTT
**
6825568 TGTTCTCAAAAAACATTGAGAACAAACGCCTTCACTAATTATGTATGT
318 TGTTCTC-AAAAA-A-T----------GCCTTCACTAATTATGTACAT
* * * ** *
6825616 AAATTAGTGAAGGCATTTTTCTAGAATAAACGTCTTCACTAATTGTCTTAAAA-TTGAGCTATGA
1 AAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACCGTCCTAAAATTTGAGCTATGA
* * * *
6825680 AAAATTGAAGTCATTTTTCATTGGAAAATGCCTTTAATAATCCTAAAAATTTTAAGAAAAAATTA
66 AAAATTGAAGGCATTTTTCACTGGAAAATACCTTTAATAATCCCAAAAATTTTAAGAAAAAATTA
* * * *
6825745 TTAAAGGCATTTATTCTTAAAAAATACCTTCACTAATTATGTACACAAATTAGTGAAGGCATTTT
131 TTAAAGGCATTTATTCTCAAAAAATGCCTTCACTAATTATGTACATAAATTAGTGAAGGTATTTT
* *
6825810 TCTAAAATAAACACCTTCACTAATCATCTTAAAATTTGAGCTATGAAAAATTGAAGGCATTTTTC
196 TCTAAAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTATGAAAAATTGAAGGCATTTTTC
* * *
6825875 ACTAGAAAACGCCTTTAATAATCTCAAAAATTTTAAGAGAAAATTATTGAAGGCGTTTGTTCTCA
261 ACTAGAAAACGCCTTTAATAATCCCAAAAAATTTAAGAAAAAATTATTGAAGGCGTTTGTTCTCA
*
6825940 AAAAATGCTTTCACTAATTATGTACAT
326 AAAAATGCCTTCACTAATTATGTACAT
*
6825967 AAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACCGTCCTAAAATTTGAGCTGTGA
1 AAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACCGTCCTAAAATTTGAGCTATGA
* * * * *
6826032 AAAATTTAAGGCGTTTTTCACTGGAAGATACTTTTAATAATCCCAAAAATTTTAAGAGAAAATTA
66 AAAATTGAAGGCATTTTTCACTGGAAAATACCTTTAATAATCCCAAAAATTTTAAGAAAAAATTA
* * ** *
6826097 TTGAAGGCATTTGTTCTCAAAAAATGCCTTTGCTAATTATGTACATAAATTAGTGAAGGTGTTTT
131 TTAAAGGCATTTATTCTCAAAAAATGCCTTCACTAATTATGTACATAAATTAGTGAAGGTATTTT
* *
6826162 TCTAAAATAAATGCCTTCACTAACCATCCTAAAATTTGAGCTTCATTTGTTATTTTAGCTGTGAA
196 TCTAAAATAAACGCCTTCACTAACCATCTTAAAATTTGAG---C-----------TA----TGAA
* * * * * *
6826227 AAATTCAAGGTATTTTTCATTGGAAGACGCCTTTAATAATCCCAAAAATTTTAAGAAAAAATTAT
243 AAATTGAAGGCATTTTTCACTAGAAAACGCCTTTAATAATCCCAAAAAATTTAAGAAAAAATTAT
* * * * *
6826292 TGAAGACGCTTGGTCTCAAAAAATACCTTCACTAATTATGTACGT
308 TGAAGGCGTTTGTTCTCAAAAAATGCCTTCACTAATTATGTACAT
** ** * * * * * * * * *
6826337 AAATTAGCAAAGGTGTTTTTCTCAAATAAATGCTTTCAGTAACCATTCTAAAATTTGAGTTGTGA
1 AAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACCGTCCTAAAATTTGAGCTATGA
* * * ** * *
6826402 AAATTTCAAGGCATTTTTCACTGGAAGACGCCTTTAACAATCCCAAAAATTTTAAGAAAAAGTTA
66 AAAATTGAAGGCATTTTTCACTGGAAAATACCTTTAATAATCCCAAAAATTTTAAGAAAAAATTA
** * *
6826467 TCGAAGGCATTTGTTCTAAAAAAATGCCTTCACTAATT
131 TTAAAGGCATTTATTCTCAAAAAATGCCTTCACTAATT
6826505 GTCTTAAAAT
Statistics
Matches: 753, Mismatches: 114, Indels: 44
0.83 0.13 0.05
Matches are distributed among these distances:
351 65 0.09
352 158 0.21
355 1 0.00
361 1 0.00
362 1 0.00
363 5 0.01
364 157 0.21
365 2 0.00
366 25 0.03
369 41 0.05
370 292 0.39
371 5 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.34
Consensus pattern (352 bp):
AAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACCGTCCTAAAATTTGAGCTATGA
AAAATTGAAGGCATTTTTCACTGGAAAATACCTTTAATAATCCCAAAAATTTTAAGAAAAAATTA
TTAAAGGCATTTATTCTCAAAAAATGCCTTCACTAATTATGTACATAAATTAGTGAAGGTATTTT
TCTAAAATAAACGCCTTCACTAACCATCTTAAAATTTGAGCTATGAAAAATTGAAGGCATTTTTC
ACTAGAAAACGCCTTTAATAATCCCAAAAAATTTAAGAAAAAATTATTGAAGGCGTTTGTTCTCA
AAAAATGCCTTCACTAATTATGTACAT
Found at i:6825945 original size:176 final size:176
Alignment explanation
Indices: 6825595--6826504 Score: 1041
Period size: 176 Copynumber: 5.1 Consensus size: 176
6825585 GAGAACAAAC
** * * **
6825595 GCCTTCACTAATTATGTATGTAAATTAGTGAAGGCATTTTTCTAGAATAAACGTCTTCACTAATT
1 GCCTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTTCTAAAATAAACGCCTTCACTAACC
* * * * * * *
6825660 GTCTTAAAA-TTGAGCTATGAAAAATTGAAGTCATTTTTCATTGGAAAATGCCTTTAATAATCCT
66 ATCTTAAAATTTGAGCTATGAAAAATTCAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCCC
* * *
6825724 AAAAATTTTAAGAAAAAATTATTAAAGGCATTTATTCTTAAAAAAT
131 AAAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
* * * *
6825770 ACCTTCACTAATTATGTACACAAATTAGTGAAGGCATTTTTCTAAAATAAACACCTTCACTAATC
1 GCCTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTTCTAAAATAAACGCCTTCACTAACC
* * * *
6825835 ATCTTAAAATTTGAGCTATGAAAAATTGAAGGCATTTTTCACTAGAAAACGCCTTTAATAATCTC
66 ATCTTAAAATTTGAGCTATGAAAAATTCAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCCC
* *
6825900 AAAAATTTTAAGAGAAAATTATTGAAGGCGTTTGTTCTCAAAAAAT
131 AAAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
* *
6825946 GCTTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTCCTAAAATAAACGCCTTCACTAACC
1 GCCTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTTCTAAAATAAACGCCTTCACTAACC
* * * * * ** *
6826011 GTCCTAAAATTTGAGCTGTGAAAAATTTAAGGCGTTTTTCACTGGAAGATACTTTTAATAATCCC
66 ATCTTAAAATTTGAGCTATGAAAAATTCAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCCC
*
6826076 AAAAATTTTAAGAGAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
131 AAAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
** ** *
6826122 GCCTTTGCTAATTATGTACATAAATTAGTGAAGGTGTTTTTCTAAAATAAATGCCTTCACTAACC
1 GCCTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTTCTAAAATAAACGCCTTCACTAACC
* * *
6826187 ATCCTAAAATTTGAGCTTCATTTGTTATTTTAGCTGTGAAAAATTCAAGGTATTTTTCATTGGAA
66 ATCTTAAAATTTGAG---C-----------TA----TGAAAAATTCAAGGCATTTTTCACTGGAA
* ** *
6826252 GACGCCTTTAATAATCCCAAAAATTTTAAGAAAAAATTATTGAAGACGCTTGGTCTCAAAAAAT
113 GACGCCTTTAATAATCCCAAAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
* * ** ** * * * *
6826316 ACCTTCACTAATTATGTACGTAAATTAGCAAAGGTGTTTTTCTCAAATAAATGCTTTCAGTAACC
1 GCCTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTTCTAAAATAAACGCCTTCACTAACC
* * * *
6826381 AT-TCTAAAATTTGAGTTGTGAAAATTTCAAGGCATTTTTCACTGGAAGACGCCTTTAACAATCC
66 ATCT-TAAAATTTGAGCTATGAAAAATTCAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCC
* * *
6826445 CAAAAATTTTAAGAAAAAGTTATCGAAGGCATTTGTTCTAAAAAAAT
130 CAAAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
6826492 GCCTTCACTAATT
1 GCCTTCACTAATT
6826505 GTCTTAAAAT
Statistics
Matches: 632, Mismatches: 83, Indels: 39
0.84 0.11 0.05
Matches are distributed among these distances:
175 65 0.10
176 414 0.66
179 1 0.00
180 1 0.00
190 1 0.00
194 150 0.24
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (176 bp):
GCCTTCACTAATTATGTACATAAATTAGTGAAGGCATTTTTCTAAAATAAACGCCTTCACTAACC
ATCTTAAAATTTGAGCTATGAAAAATTCAAGGCATTTTTCACTGGAAGACGCCTTTAATAATCCC
AAAAATTTTAAGAAAAAATTATTGAAGGCATTTGTTCTCAAAAAAT
Found at i:6826353 original size:194 final size:194
Alignment explanation
Indices: 6826019--6826395 Score: 547
Period size: 194 Copynumber: 1.9 Consensus size: 194
6826009 CCGTCCTAAA
* * * *
6826019 ATTTGAGCTGTGAAAAATTTAAGGCGTTTTTCACTGGAAGATACTTTTAATAATCCCAAAAATTT
1 ATTTGAGCTGTGAAAAATTCAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTT
* * * * * **
6826084 TAAGAGAAAATTATTGAAGGCATTTGTTCTCAAAAAATGCCTTTGCTAATTATGTACATAAATTA
66 TAAGAAAAAATTATTGAAGACACTTGGTCTCAAAAAATACCTTCACTAATTATGTACATAAATTA
**
6826149 GTGAAGGTGTTTTTCTAAAATAAATGCCTTCACTAACCATCCTAAAATTTGAGCTTCATTTGTT
131 GCAAAGGTGTTTTTCTAAAATAAATGCCTTCACTAACCATCCTAAAATTTGAGCTTCATTTGTT
* * * *
6826213 ATTTTAGCTGTGAAAAATTCAAGGTATTTTTCATTGGAAGACGCCTTTAATAATCCCAAAAATTT
1 ATTTGAGCTGTGAAAAATTCAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTT
* *
6826278 TAAGAAAAAATTATTGAAGACGCTTGGTCTCAAAAAATACCTTCACTAATTATGTACGTAAATTA
66 TAAGAAAAAATTATTGAAGACACTTGGTCTCAAAAAATACCTTCACTAATTATGTACATAAATTA
* * * *
6826343 GCAAAGGTGTTTTTCTCAAATAAATGCTTTCAGTAACCATTCTAAAATTTGAG
131 GCAAAGGTGTTTTTCTAAAATAAATGCCTTCACTAACCATCCTAAAATTTGAG
6826396 TTGTGAAAAT
Statistics
Matches: 160, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
194 160 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (194 bp):
ATTTGAGCTGTGAAAAATTCAAGGCATTTTTCACTGGAAGACACCTTTAATAATCCCAAAAATTT
TAAGAAAAAATTATTGAAGACACTTGGTCTCAAAAAATACCTTCACTAATTATGTACATAAATTA
GCAAAGGTGTTTTTCTAAAATAAATGCCTTCACTAACCATCCTAAAATTTGAGCTTCATTTGTT
Found at i:6826602 original size:124 final size:124
Alignment explanation
Indices: 6826355--6826755 Score: 482
Period size: 124 Copynumber: 3.2 Consensus size: 124
6826345 AAAGGTGTTT
* * * *
6826355 TTCTCAAATAAATGCTTTCAGTAACCAT-TCTAAAATTTGAGTTGTGAAAATTTCAAGGCATTTT
1 TTCTCAAA-AAATGCCTTCACTAACCATCT-TAAAATTTGAGTTGTGAAAAATTAAAGGCATTTT
* * *
6826419 TCACTGGAAGACGCCTTTAACAATCCCAAAAATTTTAAGA-AAAAGTTATCGAAGGCATTTG
64 TCATTGGAAGACGCCTTTAATAATCCCAAAAATTTTAAGAGAAAA-TTATTGAAGGCATTTG
* *** *
6826480 TTCTAAAAAAATGCCTTCACTAATTGTCTTAAAATTTGAGTTGCGAAAAATTAAAGGCATTTTTC
1 TTCTCAAAAAATGCCTTCACTAACCATCTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTTTTC
* *
6826545 ATTGGAAGACGCCTTTAATAATCCCAACAATTTTAAGAGAAAATTATTGAAGCCATTTG
66 ATTGGAAGACGCCTTTAATAATCCCAAAAATTTTAAGAGAAAATTATTGAAGGCATTTG
* *
6826604 TTATCAAAAAATGCCTTCACTAACCATCTTAAAATTTGAGTTGTGAAAAATTCAATGCGTTTAAT
1 TTCTCAAAAAATGCCTTCACTAACCATCTTAAAATTTGAGTTGTGAAAAATT--A-------AAG
* * * * *
6826669 GCATTTTTCATTAGAAAATGACTTTAATAATCTCAAAAATTTTAAGAGAAAATTATTGAAGGCAT
57 GCATTTTTCATTGGAAGACGCCTTTAATAATCCCAAAAATTTTAAGAGAAAATTATTGAAGGCAT
6826734 TTG
122 TTG
*
6826737 TTCTCAGAAAATGCCTTCA
1 TTCTCAAAAAATGCCTTCA
6826756 ATTATTATGT
Statistics
Matches: 235, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
124 142 0.60
125 12 0.05
126 1 0.00
133 80 0.34
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (124 bp):
TTCTCAAAAAATGCCTTCACTAACCATCTTAAAATTTGAGTTGTGAAAAATTAAAGGCATTTTTC
ATTGGAAGACGCCTTTAATAATCCCAAAAATTTTAAGAGAAAATTATTGAAGGCATTTG
Found at i:6828517 original size:68 final size:68
Alignment explanation
Indices: 6828408--6828543 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
6828398 GGTTAGTGTT
* *
6828408 AAAAAAAAGTTTGTTAAGGTTTTACACTATTTTTCATTAATACCAAGACTTCAATGACTTTTCAT
1 AAAAAAAAGTCTGTTAAGGTTTTACACTATTTTTCATTAATACCAAGACTTCAATGACTCTTCAT
6828473 GTC
66 GTC
* *
6828476 AAAAAAAAGTCTGTTAAGGTTTTACATTATTTTTCATTAATACTAAGACTTCAATGACTCTTCAT
1 AAAAAAAAGTCTGTTAAGGTTTTACACTATTTTTCATTAATACCAAGACTTCAATGACTCTTCAT
6828541 GTC
66 GTC
6828544 TTCTAAAACT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (68 bp):
AAAAAAAAGTCTGTTAAGGTTTTACACTATTTTTCATTAATACCAAGACTTCAATGACTCTTCAT
GTC
Found at i:6834525 original size:34 final size:34
Alignment explanation
Indices: 6834487--6834617 Score: 113
Period size: 34 Copynumber: 3.9 Consensus size: 34
6834477 ACAAATGCCA
*
6834487 CTAATATAGCCACATTTTTTAAATACAAATATTG
1 CTAATATAGCCACATTTTTTAGATACAAATATTG
***** * *
6834521 CTAATATAATGGTATTTTTTAGATATAAATATCG
1 CTAATATAGCCACATTTTTTAGATACAAATATTG
* *
6834555 CTAATATAG-CAGCATTTTTCAGATACAAA-CTTG
1 CTAATATAGCCA-CATTTTTTAGATACAAATATTG
** * *
6834588 CTAATATAGCGGCGTTTTTCAGATACAAAT
1 CTAATATAGCCACATTTTTTAGATACAAAT
6834618 GCTGCAAATG
Statistics
Matches: 75, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
33 27 0.36
34 48 0.64
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (34 bp):
CTAATATAGCCACATTTTTTAGATACAAATATTG
Found at i:6834612 original size:67 final size:68
Alignment explanation
Indices: 6834487--6834617 Score: 158
Period size: 67 Copynumber: 1.9 Consensus size: 68
6834477 ACAAATGCCA
* * * * *
6834487 CTAATATAGCCACATTTTTTAAATACAAATATTGCTAATATAATGGTATTTTTTAGATATAAATA
1 CTAATATAGCCACATTTTTCAAATACAAATATTGCTAATATAACGGCATTTTTCAGATACAAATA
6834552 TCG
66 TCG
* * * *
6834555 CTAATATAG-CAGCATTTTTCAGATACAAA-CTTGCTAATATAGCGGCGTTTTTCAGATACAAAT
1 CTAATATAGCCA-CATTTTTCAAATACAAATATTGCTAATATAACGGCATTTTTCAGATACAAAT
6834618 GCTGCAAATG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
67 29 0.55
68 24 0.45
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (68 bp):
CTAATATAGCCACATTTTTCAAATACAAATATTGCTAATATAACGGCATTTTTCAGATACAAATA
TCG
Found at i:6834639 original size:34 final size:33
Alignment explanation
Indices: 6834569--6834639 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 33
6834559 TATAGCAGCA
* *
6834569 TTTTTCAGATACAAACTTGCTAATATAGCGGCG
1 TTTTTCAGATACAAACTTGCAAATATAGCGACG
* *
6834602 TTTTTCAGATACAAA-TGCTGCAAATGTAGCGATG
1 TTTTTCAGATACAAACT--TGCAAATATAGCGACG
6834636 TTTT
1 TTTT
6834640 ATAGAAAACG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 1 0.03
33 15 0.47
34 16 0.50
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (33 bp):
TTTTTCAGATACAAACTTGCAAATATAGCGACG
Found at i:6837183 original size:21 final size:20
Alignment explanation
Indices: 6837154--6837202 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
6837144 GCCGAGCCGT
* * *
6837154 TTTTCTTTTTGGTTTATTTCA
1 TTTTATTTTTGATTTAGTT-A
*
6837175 TTTTATTTTTTATTTAGTTA
1 TTTTATTTTTGATTTAGTTA
6837195 TTTTATTT
1 TTTTATTT
6837203 GTTTATTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.14, C:0.04, G:0.06, T:0.76
Consensus pattern (20 bp):
TTTTATTTTTGATTTAGTTA
Found at i:6837914 original size:138 final size:137
Alignment explanation
Indices: 6837760--6838028 Score: 443
Period size: 138 Copynumber: 2.0 Consensus size: 137
6837750 CTCAAACGGA
* *
6837760 GAAGAATTTAAATGAAATTTTAAAAAATAATTGTCATATTATTTTCTTTCAAAAAATTAAAAAGA
1 GAAGAATTTAAATGAAACTTCAAAAAATAATTGTCATATTATTTTCTTTCAAAAAATTAAAAA-A
*
6837825 AAAAGAGAAAAATTCTAAATAGACCCAAATGGTA-AAAATTTAGAAATTAAAAATA-AAAATTTC
65 AAAA-A-AAAAATTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTAAAAAGAGAAAATTTC
6837888 TAAAATGGTG
128 TAAAATGGTG
* * *
6837898 GAAGAATTTAAATGAAACTTCAAAAAATAATTGTCATATTATTTTCTTTCCAAAGATTAAAAAAG
1 GAAGAATTTAAATGAAACTTCAAAAAATAATTGTCATATTATTTTCTTTCAAAAAATTAAAAAAA
6837963 AAAAAAAAATTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTAAAAAGAGAAAATTTCTAA
66 AAAAAAAAATTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTAAAAAGAGAAAATTTCTAA
6838028 A
131 A
6838029 TAGACCGAAA
Statistics
Matches: 123, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
135 27 0.22
136 21 0.17
137 16 0.13
138 59 0.48
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (137 bp):
GAAGAATTTAAATGAAACTTCAAAAAATAATTGTCATATTATTTTCTTTCAAAAAATTAAAAAAA
AAAAAAAAATTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTAAAAAGAGAAAATTTCTAA
AATGGTG
Found at i:6838032 original size:50 final size:49
Alignment explanation
Indices: 6837963--6838155 Score: 242
Period size: 49 Copynumber: 4.1 Consensus size: 49
6837953 ATTAAAAAAG
6837963 AAAAA-AAAA-TTCTAAATAGACCCAAATGGT-AGAAAATTTAGAAATTA
1 AAAAAGAAAATTTCTAAATAGACCCAAATGGTGA-AAAATTTAGAAATTA
* *
6838010 AAAAGAGAAAATTTCTAAATAGACCGAAATTGTGAAAAATTTAGAAATTA
1 AAAA-AGAAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTA
* *
6838060 AAAAAGAAAATTTTTAAATAGACCCAAATGGTGAAAAATTTAGGAA-T-
1 AAAAAGAAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTA
* * *
6838107 --AAA-AAAATTTCTAAATAGGCCCAAATGGTGAAAATTTTATAAA-TA
1 AAAAAGAAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTA
6838152 AAAA
1 AAAA
6838156 TAAATTCCAA
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
44 36 0.28
45 3 0.02
47 6 0.05
48 2 0.02
49 42 0.33
50 38 0.30
51 1 0.01
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.25
Consensus pattern (49 bp):
AAAAAGAAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTA
Found at i:6840231 original size:21 final size:21
Alignment explanation
Indices: 6840205--6840246 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
6840195 AAGTTTTACA
*
6840205 AACCATACCTTCGTTCTAGTG
1 AACCATACCTTCATTCTAGTG
6840226 AACCATACCTTCATTCTAGTG
1 AACCATACCTTCATTCTAGTG
6840247 TTCTAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (21 bp):
AACCATACCTTCATTCTAGTG
Found at i:6849809 original size:43 final size:43
Alignment explanation
Indices: 6849761--6849996 Score: 214
Period size: 43 Copynumber: 5.5 Consensus size: 43
6849751 GTTGTCGAAG
* *
6849761 AGCCTTATTTTTTTTTCAAAGTTATTGAGCCTTTGATTAGAGA
1 AGCCTTATTTTTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGA
* * * * *
6849804 AGCCTTA-TTTATTTTCAAAAGTTGTTGAGCTTTTGCTTAGAGG
1 AGCCTTATTTTTTTTTC-AAAGTTGTTGAGCCTCTGATTAGAGA
* * * * *
6849847 AGGCTTATTTATTTCTCAAAGTTGTTAAGCCTCTGCTTAGAGA
1 AGCCTTATTTTTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGA
* * * *
6849890 AGCCTTATTTATTTTTT-AAAGTCGTTAAGCCTCTGTTTA-AAA
1 AGCCTTATTT-TTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGA
*
6849932 GAGCCTTATTTATTTTTTTAAAGTTGTTGAGCCTCT-ATT-GAGA
1 -AGCCTTATTT-TTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGA
*
6849975 AGAGCTT-TTTTATTTTTCAAAG
1 AG-CCTTATTTT-TTTTTCAAAG
6849997 CATTAAACCT
Statistics
Matches: 160, Mismatches: 25, Indels: 17
0.79 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 24 0.15
43 110 0.69
44 25 0.16
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (43 bp):
AGCCTTATTTTTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGA
Found at i:6849887 original size:86 final size:86
Alignment explanation
Indices: 6849758--6849995 Score: 264
Period size: 86 Copynumber: 2.8 Consensus size: 86
6849748 ATGGTTGTCG
* * *
6849758 AAGAGCCTTATTTTTTTTTCAAAGTTATTGAGCCTTTGATTAGAGAAGCCTTATTTATTTTCAAA
1 AAGAGCCTTATTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGAAGCCTTATTTATTTTCAAA
* * * * *
6849823 AGTTGTTGAGCTTTTGCTTAG
66 AGTCGTTAAGCCTCTGCTTAA
* * * * * **
6849844 AGGAGGCTTATTTATTTCTCAAAGTTGTTAAGCCTCTGCTTAGAGAAGCCTTATTTATTTTTTAA
1 AAGAGCCTTATTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGAAGCCTTATTTATTTTCAAA
*
6849909 AGTCGTTAAGCCTCTGTTTAA
66 AGTCGTTAAGCCTCTGCTTAA
* * *
6849930 AAGAGCCTTATTTATTTTTTTAAAGTTGTTGAGCCTCT-ATT-GAGAAGAGCTTTTTTATTTTTC
1 AAGAGCCTTATTTA-TTTTTCAAAGTTGTTGAGCCTCTGATTAGAGAAG-CCTTATTTA-TTTTC
6849993 AAA
63 AAA
6849996 GCATTAAACC
Statistics
Matches: 123, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
85 6 0.05
86 91 0.74
87 26 0.21
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (86 bp):
AAGAGCCTTATTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGAAGCCTTATTTATTTTCAAA
AGTCGTTAAGCCTCTGCTTAA
Found at i:6849987 original size:129 final size:129
Alignment explanation
Indices: 6849761--6849996 Score: 282
Period size: 129 Copynumber: 1.8 Consensus size: 129
6849751 GTTGTCGAAG
* * * *
6849761 AGCCTTATTTTTTTTTCAAAGTTATTGAGCCTTTGATTAGAGAAGCCTTATTTATTTTCAAAAGT
1 AGCCTTATTTTTTTTTCAAAGTCATTAAGCCTCTGATTAAAGAAGCCTTATTTATTTTCAAAAGT
* * * *
6849826 TGTTGAGCTTTTGCTTAGAGGAGGCTTATTTATTTCTCAAAGTTGTTAAGCCTCTGCTTAGAGA
66 TGTTGAGCCTCTGATTAGAAGAGGCTTATTTATTTCTCAAAGTTGTTAAGCCTCTGCTTAGAGA
* * **
6849890 AGCCTTATTTATTTTTT-AAAGTCGTTAAGCCTCTGTTTAAA-AGAGCCTTATTTATTTTTTTAA
1 AGCCTTATTT-TTTTTTCAAAGTCATTAAGCCTCTGATTAAAGA-AGCCTTATTTA-TTTTCAAA
* *
6849953 AGTTGTTGAGCCTCT-ATTGAGAAGA-GCTTTTTTATTTTTCAAAG
63 AGTTGTTGAGCCTCTGATT-AGAAGAGGCTTATTTATTTCTCAAAG
6849997 CATTAAACCT
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
128 1 0.01
129 58 0.65
130 30 0.34
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (129 bp):
AGCCTTATTTTTTTTTCAAAGTCATTAAGCCTCTGATTAAAGAAGCCTTATTTATTTTCAAAAGT
TGTTGAGCCTCTGATTAGAAGAGGCTTATTTATTTCTCAAAGTTGTTAAGCCTCTGCTTAGAGA
Found at i:6850788 original size:15 final size:14
Alignment explanation
Indices: 6850759--6850795 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
6850749 ATTGGGTTCT
6850759 AGAGAG-AAA-ATG
1 AGAGAGAAAAGATG
6850771 AGAGAAGAAAAGATG
1 AGAG-AGAAAAGATG
6850786 AGAGAGAAAA
1 AGAGAGAAAA
6850796 AAAAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 2 0.09
14 9 0.41
15 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.32, T:0.05
Consensus pattern (14 bp):
AGAGAGAAAAGATG
Found at i:6851095 original size:18 final size:18
Alignment explanation
Indices: 6851059--6851096 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6851049 TTGTTTTTAG
*
6851059 TATTTTTTATTTTTGTTT
1 TATTTTTTATTTATGTTT
6851077 TATTTGTTTATTTAT-TTT
1 TATTT-TTTATTTATGTTT
6851095 TA
1 TA
6851097 AATTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (18 bp):
TATTTTTTATTTATGTTT
Found at i:6853664 original size:157 final size:160
Alignment explanation
Indices: 6853351--6853666 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 160
6853341 AATTAATTAT
*
6853351 ATGTTATCCTTGAATTATGACTAAAATGATCTTAATTTTCATATTTAAAATTTAATTTCCTTAAT
1 ATGTTATCCTTGAATTATGACTAAAATGATCTTAATTTTCATATTCAAAATTTAATTTCCTTAA-
6853416 TTTTTTTGTAAAAAAATGTTTTGATTTTAATCGTTTGCTTGAAATAAATAAGAACCGTGCATATT
65 TTTTTTTGTAAAAAAATGTTTTGATTTTAATCGTTTGCTTGAAATAAATAAGAACCGTGCATATT
6853481 GAAAAATTCTTGAAAATATTTCAATACTTTG
130 GAAAAATTCTTGAAAATATTTCAATACTTTG
* **
6853512 ATGTTATCCTTGAATTATGA-TTAAATGATCTTAATTTTGGTATTCAAAATTTAATTTCCTTAA-
1 ATGTTATCCTTGAATTATGACTAAAATGATCTTAATTTTCATATTCAAAATTTAATTTCCTTAAT
* *
6853575 TTTTTTGT-AAGAAATGTTTTGATTTTAATCGTTTGCTTGAAATAAATAAGAACTGTGCATATTG
66 TTTTTTGTAAAAAAATGTTTTGATTTTAATCGTTTGCTTGAAATAAATAAGAACCGTGCATATTG
*
6853639 AAAAATTCTTGAAAATATTTTAATACTT
131 AAAAATTCTTGAAAATATTTCAATACTT
6853667 CGATAATATT
Statistics
Matches: 148, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
157 81 0.55
158 8 0.05
160 39 0.26
161 20 0.14
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (160 bp):
ATGTTATCCTTGAATTATGACTAAAATGATCTTAATTTTCATATTCAAAATTTAATTTCCTTAAT
TTTTTTGTAAAAAAATGTTTTGATTTTAATCGTTTGCTTGAAATAAATAAGAACCGTGCATATTG
AAAAATTCTTGAAAATATTTCAATACTTTG
Found at i:6854598 original size:26 final size:27
Alignment explanation
Indices: 6854568--6854618 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
6854558 TCCTTTCTCA
6854568 TCTAATTATTT-ATC-TTAATTTTTAAT
1 TCTAATT-TTTAATCTTTAATTTTTAAT
6854594 TCTAATTTTTAATCTTTAATTTTTA
1 TCTAATTTTTAATCTTTAATTTTTA
6854619 GAAAATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 3 0.13
26 10 0.43
27 10 0.43
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (27 bp):
TCTAATTTTTAATCTTTAATTTTTAAT
Found at i:6854599 original size:13 final size:14
Alignment explanation
Indices: 6854568--6854618 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
6854558 TCCTTTCTCA
6854568 TCTAATTATTT-ATC
1 TCTAATT-TTTAATC
6854582 T-TAATTTTTAAT-
1 TCTAATTTTTAATC
6854594 TCTAATTTTTAATC
1 TCTAATTTTTAATC
*
6854608 TTTAATTTTTA
1 TCTAATTTTTA
6854619 GAAAATAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 4 0.12
13 18 0.55
14 11 0.33
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (14 bp):
TCTAATTTTTAATC
Found at i:6855963 original size:21 final size:21
Alignment explanation
Indices: 6855908--6855963 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
6855898 AAACTTCTTC
*
6855908 TTTTTTTTTTTAA-ATCCTTA
1 TTTTTTTTTTTAATATCCCTA
* *
6855928 TTTATTTTTTT-ATATCCCTG
1 TTTTTTTTTTTAATATCCCTA
6855948 TTTTTTTTTTTAATAT
1 TTTTTTTTTTTAATAT
6855964 ATCTTGGGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 1 0.03
20 25 0.83
21 4 0.13
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTTTTTTTTAATATCCCTA
Found at i:6858503 original size:61 final size:61
Alignment explanation
Indices: 6858407--6858597 Score: 187
Period size: 60 Copynumber: 3.2 Consensus size: 61
6858397 TTATAATTAT
* * * * *
6858407 TTACTATAAT-TCCTTCAT-CCATAATTATGGAAATATCTCTCC-TCTTATAATTGGTCAAAA
1 TTACTATAATATCCTTCCTACTATAATTATGAAAATATCT-TCCTTC-CATAATTGATCAAAA
* * * *
6858467 TTATTATAATA-CCTTCTTACTATAGTTATGAAAATATCTTCCTTCCATAATTGATTAAAA
1 TTACTATAATATCCTTCCTACTATAATTATGAAAATATCTTCCTTCCATAATTGATCAAAA
* * * * *
6858527 TTACTCTAATATCCTTCCTACTATAATTACGAAAA-AGCCTTTCAT-CATAATTGATCAAAA
1 TTACTATAATATCCTTCCTACTATAATTATGAAAATA-TCTTCCTTCCATAATTGATCAAAA
6858587 TTACTATAATA
1 TTACTATAATA
6858598 GTCTCTTACC
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
60 64 0.59
61 44 0.41
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (61 bp):
TTACTATAATATCCTTCCTACTATAATTATGAAAATATCTTCCTTCCATAATTGATCAAAA
Found at i:6859493 original size:63 final size:61
Alignment explanation
Indices: 6859415--6859541 Score: 173
Period size: 63 Copynumber: 2.0 Consensus size: 61
6859405 TTTATCACAG
* * * *
6859415 TTACAAAAATACCCTTCTTATCATAGTTGGCCAAAATTACTATAATACCTTTTTATACCATAA
1 TTACAAAAATACCCTTCATATCATAATTGGCC-AAATTACTATAATACC-TCTCATACCATAA
* * *
6859478 TTACCAAAATGCCCTTCATATCGTAATTGGCCAAATTACTATAATACCTCTCATACCATAA
1 TTACAAAAATACCCTTCATATCATAATTGGCCAAATTACTATAATACCTCTCATACCATAA
6859539 TTA
1 TTA
6859542 TGTAGACCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 14 0.25
62 16 0.28
63 27 0.47
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (61 bp):
TTACAAAAATACCCTTCATATCATAATTGGCCAAATTACTATAATACCTCTCATACCATAA
Found at i:6866898 original size:166 final size:166
Alignment explanation
Indices: 6866624--6866958 Score: 616
Period size: 166 Copynumber: 2.0 Consensus size: 166
6866614 GTTATACAAG
6866624 TGACTAGATATGATTTTGAGCTGCTATATGTGCCTAATAGTCGTATAGCAACTAAACTCTCAAAA
1 TGACTAGATATGATTTTGAGCTGCTATATGTGCCTAATAGTCGTATAGCAACTAAACTCTCAAAA
*
6866689 TACACTGGTCATATTATTTATTTCCTTATATGAACCTATTACAAAGAGTAGAGAAAATGTTTTCT
66 TACACTGGTCATATTATTTATTTCCTTATATGAACCTATTACAAAGAGTAAAGAAAATGTTTTCT
6866754 TGATCATGAGAGCTTACCACCCATTCTATGCGAGCA
131 TGATCATGAGAGCTTACCACCCATTCTATGCGAGCA
*
6866790 TGACTAGATATGATTTTGAGCTGCTATATGTGCCTAATAGTCGTCTAGCAACTAAACTCTCAAAA
1 TGACTAGATATGATTTTGAGCTGCTATATGTGCCTAATAGTCGTATAGCAACTAAACTCTCAAAA
**
6866855 TACACTGGTTGTATTATTTATTTCCTTATATGAACCTATTACAAAGAGTAAAGAAAATGTTTTCT
66 TACACTGGTCATATTATTTATTTCCTTATATGAACCTATTACAAAGAGTAAAGAAAATGTTTTCT
* *
6866920 TGATCATGAGAGTTTGCCACCCATTCTATGCGAGCA
131 TGATCATGAGAGCTTACCACCCATTCTATGCGAGCA
6866956 TGA
1 TGA
6866959 GATGTTGGAA
Statistics
Matches: 163, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
166 163 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (166 bp):
TGACTAGATATGATTTTGAGCTGCTATATGTGCCTAATAGTCGTATAGCAACTAAACTCTCAAAA
TACACTGGTCATATTATTTATTTCCTTATATGAACCTATTACAAAGAGTAAAGAAAATGTTTTCT
TGATCATGAGAGCTTACCACCCATTCTATGCGAGCA
Found at i:6868701 original size:191 final size:193
Alignment explanation
Indices: 6868248--6868791 Score: 560
Period size: 191 Copynumber: 2.8 Consensus size: 193
6868238 AAAATTTTTT
* * * * * *
6868248 ACTTGGAAATTTCTAAAAAAAATAAAACATTCTTAATTTTTAGAATTTCAACATTGGACTAATAA
1 ACTTAGAAATTTTTAAAAAAAAT-CAACATTCTTAATTTTTAGAATTTCATCATTGGAATAATTA
* * *
6868313 CTATTTA-T----TTTTTGAAGACTATGTTTTATTTTTATTCTTGATTTGAAAATAAATGCAAAT
65 CTATTTATTCCAATTTTTGAAGACTATATTTTATTTTTATTCTTAATTTGAAAATAAATGTAAAT
* * **
6868373 TATATTTATTAAAAGTTTTATCTAAA-GTTTTCATCATTTAGGAGAATCTAGAATGAAACTTCTC
130 TATATTTATTAAAA-TTTTATCTAAATTTTTTCATCATTCAGGAGAATCTAGAAAAAAACTTCTC
* * * *
6868437 ACTTAAAAATTTCTT-TAAAAAATCAACTATTCTTGATTTTTTAGAATTTTATCATTGGAATAAT
1 ACTTAGAAATTT-TTAAAAAAAATCAAC-ATTCTT-AATTTTTAGAATTTCATCATTGGAATAAT
* * *
6868501 TACTATTTATTCCAATTTTATGAAAATTATATTTTA-TTTT-TTCTTCATTTGAAAA-AAATGTA
63 TACTATTTATTCCAATTTT-TGAAGACTATATTTTATTTTTATTCTTAATTTGAAAATAAATGTA
* * * *
6868563 AATTATATTTATCAAAATTCTTACCTAAATTTTTTC-T-A-TCAGGAGAATTTATTAAAAAAACT
127 AATTATATTTATTAAAATT-TTATCTAAATTTTTTCATCATTCAGGAGAATCTA-GAAAAAAACT
6868625 TCTC
190 TCTC
* * * *
6868629 A-TATTGAAATTTTTAAAAAAAATCAATCATTCTTAATTTTTAAAACTTCATCACTGGAATAATT
1 ACT-TAGAAATTTTTAAAAAAAATCAA-CATTCTTAATTTTTAGAATTTCATCATTGGAATAATT
* * * * *
6868693 GCTATTTATTTCCAAATTTTT-AAGACTGTATTTTATTGTTTGTTCTTAAATTGAAAATAAATAT
64 ACTATTTA-TTCC-AATTTTTGAAGACTATATTTTATT-TTTATTCTTAATTTGAAAATAAATGT
6868757 AAATTATATTTATTAAAATTTTTATCTAAATTTTT
126 AAATTATATTTATTAAAA-TTTTATCTAAATTTTT
6868792 CATTATTTTA
Statistics
Matches: 293, Mismatches: 40, Indels: 38
0.79 0.11 0.10
Matches are distributed among these distances:
188 3 0.01
189 23 0.08
190 34 0.12
191 58 0.20
192 44 0.15
193 41 0.14
194 32 0.11
195 43 0.15
196 15 0.05
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (193 bp):
ACTTAGAAATTTTTAAAAAAAATCAACATTCTTAATTTTTAGAATTTCATCATTGGAATAATTAC
TATTTATTCCAATTTTTGAAGACTATATTTTATTTTTATTCTTAATTTGAAAATAAATGTAAATT
ATATTTATTAAAATTTTATCTAAATTTTTTCATCATTCAGGAGAATCTAGAAAAAAACTTCTC
Found at i:6870307 original size:3 final size:3
Alignment explanation
Indices: 6870299--6870343 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
6870289 CATATGAAAT
6870299 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6870344 AATTTGATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:6873329 original size:12 final size:11
Alignment explanation
Indices: 6873288--6873329 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
6873278 CCAAATATTC
6873288 TATAATATA-A
1 TATAATATATA
6873298 TATAATATATA
1 TATAATATATA
*
6873309 TACACATATATA
1 TATA-ATATATA
6873321 TAT-ATATAT
1 TATAATATAT
6873330 TAGATTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 15 0.54
11 4 0.14
12 9 0.32
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (11 bp):
TATAATATATA
Found at i:6873577 original size:20 final size:21
Alignment explanation
Indices: 6873528--6873578 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
6873518 ATAATTTTTT
* *
6873528 AAATAAGATTATTTGGTAAAC
1 AAATAAAATTATTTAGTAAAC
* *
6873549 AACTAAAATTATTTATTAAA-
1 AAATAAAATTATTTAGTAAAC
6873569 AAATAAAATT
1 AAATAAAATT
6873579 CATAGTTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (21 bp):
AAATAAAATTATTTAGTAAAC
Found at i:6873661 original size:17 final size:17
Alignment explanation
Indices: 6873639--6873671 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6873629 TTTAATTATA
*
6873639 ATTTGAATAATTTTAAT
1 ATTTGAATAAATTTAAT
6873656 ATTTGAATAAATTTAA
1 ATTTGAATAAATTTAA
6873672 AATTATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
ATTTGAATAAATTTAAT
Found at i:6873707 original size:21 final size:21
Alignment explanation
Indices: 6873683--6873728 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
6873673 ATTATTTAAT
*
6873683 TTATAATTAAAAGAAACTATC
1 TTATAATTAAAAAAAACTATC
** *
6873704 TTATTTTTAAAAAAAATTATC
1 TTATAATTAAAAAAAACTATC
6873725 TTAT
1 TTAT
6873729 GTATCATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (21 bp):
TTATAATTAAAAAAAACTATC
Found at i:6881748 original size:23 final size:22
Alignment explanation
Indices: 6881695--6881741 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
6881685 GTTTAATGAT
*
6881695 TTATTTAATACTTTTTCATTGC
1 TTATTTAATACATTTTCATTGC
6881717 TTATTTAATACATTTTCATTG-
1 TTATTTAATACATTTTCATTGC
6881738 TTAT
1 TTAT
6881742 CTCTAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTTAATACATTTTCATTGC
Found at i:6890926 original size:15 final size:15
Alignment explanation
Indices: 6890906--6890934 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6890896 CGATTTTTTA
6890906 TTAAGTACAAAAGAG
1 TTAAGTACAAAAGAG
6890921 TTAAGTACAAAAGA
1 TTAAGTACAAAAGA
6890935 TGTCAAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.21
Consensus pattern (15 bp):
TTAAGTACAAAAGAG
Found at i:6893309 original size:19 final size:20
Alignment explanation
Indices: 6893273--6893315 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
6893263 TCAAATTTTC
* * *
6893273 AAAAATAAATACATATAATT
1 AAAAATAAATAAAAATAATG
6893293 AAAAA-AAATAAAAATAATG
1 AAAAATAAATAAAAATAATG
6893312 AAAA
1 AAAA
6893316 TAATTTCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (20 bp):
AAAAATAAATAAAAATAATG
Found at i:6894836 original size:3 final size:3
Alignment explanation
Indices: 6894830--6894859 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
6894820 TATTATTATT
6894830 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6894860 GAACAACAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6894867 original size:3 final size:3
Alignment explanation
Indices: 6894861--6894892 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
6894851 TAATAATAAG
*
6894861 AAC AAC AAC AAC AAC AAC AAT AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
6894893 TAATAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.28, G:0.00, T:0.03
Consensus pattern (3 bp):
AAC
Found at i:6894893 original size:12 final size:12
Alignment explanation
Indices: 6894855--6894895 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
6894845 TAATAATAAT
*
6894855 AATAAGAACAAC
1 AATAACAACAAC
*
6894867 AACAACAACAAC
1 AATAACAACAAC
6894879 AATAACAACAAC
1 AATAACAACAAC
6894891 AATAA
1 AATAA
6894896 TAATAAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.68, C:0.22, G:0.02, T:0.07
Consensus pattern (12 bp):
AATAACAACAAC
Found at i:6896041 original size:17 final size:17
Alignment explanation
Indices: 6896021--6896067 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
6896011 AAAAAAAGGC
6896021 AATGA-AAAAAATGATAA
1 AATGAGAAAAAATGA-AA
*
6896038 AATGATAAAAAA-GAAA
1 AATGAGAAAAAATGAAA
6896054 AA-GAGAAAAAATGA
1 AATGAGAAAAAATGA
6896068 GAAGTTGCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
17 7 0.26
18 6 0.22
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (17 bp):
AATGAGAAAAAATGAAA
Found at i:6896347 original size:84 final size:83
Alignment explanation
Indices: 6896242--6896409 Score: 270
Period size: 84 Copynumber: 2.0 Consensus size: 83
6896232 TTAGTGAGTT
6896242 ATCTTAGGAAATTAAGGAATAGTCTGAAAATAAGCAGTA-AGTAGAAGAAGA-A-GAAGGAAAGA
1 ATCTTAGGAAATTAAGGAATAGTCTGAAAATAAGCAGTAGA-TA-AA-AAGAGAGGAAGGAAAGA
6896304 AAAGAATGAAAATAAGAAAAAA
63 AAAGAATGAAAATAA-AAAAAA
*
6896326 ATCTTGGGAAATTAAGGAATAGTCTGAAAATAAGCAGTAGATAAAAAGAGAGGAAGGAAAGAAAA
1 ATCTTAGGAAATTAAGGAATAGTCTGAAAATAAGCAGTAGATAAAAAGAGAGGAAGGAAAGAAAA
6896391 GAATGAAAATAAAAAAAA
66 GAATGAAAATAAAAAAAA
6896409 A
1 A
6896410 GGAAAAATAG
Statistics
Matches: 80, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
82 4 0.05
83 10 0.12
84 65 0.81
85 1 0.01
ACGTcount: A:0.58, C:0.04, G:0.23, T:0.15
Consensus pattern (83 bp):
ATCTTAGGAAATTAAGGAATAGTCTGAAAATAAGCAGTAGATAAAAAGAGAGGAAGGAAAGAAAA
GAATGAAAATAAAAAAAA
Found at i:6899934 original size:65 final size:66
Alignment explanation
Indices: 6899770--6900015 Score: 216
Period size: 65 Copynumber: 3.8 Consensus size: 66
6899760 TTCACATTTA
* * * * * *
6899770 CATCTTGAGAAA-ACATTTGATCTACATG---CTAAAAAAAATCACATTTGCATCACTTGCATGT
1 CATCATGAGAAAGACATTTGATCTACATGTTACAAAAAAAAAACGCATTTGCATAACTTACATGT
*
6899831 A
66 G
** * * * * * * ** * *
6899832 TGTCATGAGAAAAATAGTTGATCTACAGGCTA-TAAAAAAATTCGCATTTGTATTACTTACATGT
1 CATCATGAGAAAGACATTTGATCTACATGTTACAAAAAAAAAACGCATTTGCATAACTTACATGT
6899896 G
66 G
* * *
6899897 CATCAT-AGAAAGGCATTTGATCTACATGTTACAAAAAAAAAACGCATTTGCATAATTTGCATGT
1 CATCATGAGAAAGACATTTGATCTACATGTTACAAAAAAAAAACGCATTTGCATAACTTACATGT
6899961 G
66 G
* * * *
6899962 CATCATGAGAAAGACGTTTGATCTGCATGTTACAAAAAAAAAAGGTATTTGCAT
1 CATCATGAGAAAGACATTTGATCTACATGTTACAAAAAAAAAACGCATTTGCAT
6900016 TTGCATAACT
Statistics
Matches: 146, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
62 9 0.06
63 13 0.09
64 19 0.13
65 63 0.43
66 42 0.29
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (66 bp):
CATCATGAGAAAGACATTTGATCTACATGTTACAAAAAAAAAACGCATTTGCATAACTTACATGT
G
Found at i:6902609 original size:18 final size:19
Alignment explanation
Indices: 6902571--6902611 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
6902561 ATAAATAAAT
6902571 AAATAAAGAAAAACCCAAA
1 AAATAAAGAAAAACCCAAA
*
6902590 AAATAAAGAAAAACCTAAA
1 AAATAAAGAAAAACCCAAA
6902609 AAA
1 AAA
6902612 GAAATTTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.76, C:0.12, G:0.05, T:0.07
Consensus pattern (19 bp):
AAATAAAGAAAAACCCAAA
Found at i:6902854 original size:3 final size:3
Alignment explanation
Indices: 6902846--6902872 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6902836 GTCATTTTTA
6902846 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
6902873 TAGAATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6909365 original size:6 final size:6
Alignment explanation
Indices: 6909343--6909409 Score: 57
Period size: 6 Copynumber: 10.7 Consensus size: 6
6909333 ATAGTCTGAA
*
6909343 AGAAGG AGTAA-G AGAAGG AGAA-G ATGAAGA AGAAGG AGAAGG AGAAGATG
1 AGAAGG AG-AAGG AGAAGG AGAAGG A-GAAGG AGAAGG AGAAGG AGAAG--G
*
6909393 AAGAAGC AGAAGG AGAA
1 -AGAAGG AGAAGG AGAA
6909410 AAAGAAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
5 4 0.08
6 37 0.74
7 3 0.06
8 1 0.02
9 5 0.10
ACGTcount: A:0.54, C:0.01, G:0.40, T:0.04
Consensus pattern (6 bp):
AGAAGG
Found at i:6909414 original size:24 final size:23
Alignment explanation
Indices: 6909341--6909411 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 23
6909331 ATATAGTCTG
*
6909341 AAAGAAGGAGTAAG-AGAAGGAGA
1 AAAGAAGAAG-AAGCAGAAGGAGA
* *
6909364 AGATGAAGAAGAAGGAGAAGGAG-
1 A-AAGAAGAAGAAGCAGAAGGAGA
*
6909387 -AAGATGAAGAAGCAGAAGGAGA
1 AAAGAAGAAGAAGCAGAAGGAGA
6909409 AAA
1 AAA
6909412 AGAAAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
21 18 0.46
23 6 0.15
24 15 0.38
ACGTcount: A:0.56, C:0.01, G:0.38, T:0.04
Consensus pattern (23 bp):
AAAGAAGAAGAAGCAGAAGGAGA
Found at i:6913002 original size:19 final size:20
Alignment explanation
Indices: 6912978--6913017 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
6912968 TTTTCCATGA
6912978 ATGCCATG-TAAAAGTAATT
1 ATGCCATGTTAAAAGTAATT
6912997 ATGCCATGTTTAAAAGTAATT
1 ATGCCATG-TTAAAAGTAATT
6913018 GCGAAACTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGCCATGTTAAAAGTAATT
Found at i:6914580 original size:13 final size:13
Alignment explanation
Indices: 6914562--6914612 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
6914552 ATTATATATA
6914562 TAATTTTTATTTT
1 TAATTTTTATTTT
** *
6914575 TAATTTTTACATA
1 TAATTTTTATTTT
6914588 TACGATTTTTATTTT
1 TA--ATTTTTATTTT
6914603 TAATTTTTAT
1 TAATTTTTAT
6914613 ATATATGTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
13 20 0.67
15 10 0.33
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (13 bp):
TAATTTTTATTTT
Found at i:6914588 original size:28 final size:28
Alignment explanation
Indices: 6914557--6914618 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
6914547 TAAAAATTAT
6914557 ATATATAATTTTTATTTTTAATTTTTAC
1 ATATATAATTTTTATTTTTAATTTTTAC
** *
6914585 ATATACGATTTTTATTTTTAATTTTTAT
1 ATATATAATTTTTATTTTTAATTTTTAC
6914613 ATATAT
1 ATATAT
6914619 GTAAATTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (28 bp):
ATATATAATTTTTATTTTTAATTTTTAC
Found at i:6915704 original size:61 final size:61
Alignment explanation
Indices: 6915639--6915766 Score: 159
Period size: 61 Copynumber: 2.1 Consensus size: 61
6915629 TAACATTACT
* * * *
6915639 AAAATACCCTCTTACCATAATTGGCCAAAATTACTATAATGCCCGTACA-ATCATAATTATG
1 AAAATACCCTCTCACCATAATTGGCAAAAATAACTATAATGCCC-TACATACCATAATTATG
* * * * *
6915700 AAAATGCTCTCTCACCATCATTTGCAAAAATAACTATAATGCCCTTCATACCATAATTATG
1 AAAATACCCTCTCACCATAATTGGCAAAAATAACTATAATGCCCTACATACCATAATTATG
6915761 AAAATA
1 AAAATA
6915767 TTTTTCATAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 3 0.05
61 53 0.95
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.30
Consensus pattern (61 bp):
AAAATACCCTCTCACCATAATTGGCAAAAATAACTATAATGCCCTACATACCATAATTATG
Found at i:6915877 original size:61 final size:61
Alignment explanation
Indices: 6915726--6915878 Score: 148
Period size: 61 Copynumber: 2.5 Consensus size: 61
6915716 ATCATTTGCA
* * * * **** *
6915726 AAAATAACTATAATGCCCTTCATACCATAATTATGAAAATATTTTTCATATTATAATTTACC
1 AAAATTACTATAATGCCCTTTA-ACCATAATAACGAAAATACCCCTCATAGTATAATTTACC
* * *
6915788 AAAATTACTATAAT-ACCTTCTAATCATAATAACGAAAATACCCCTCATAGTATAA-TTAGCT
1 AAAATTACTATAATGCCCTT-TAACCATAATAACGAAAATACCCCTCATAGTATAATTTA-CC
*
6915849 TAAATTACTATAATGCCCTTTAACCATAAT
1 AAAATTACTATAATGCCCTTTAACCATAAT
6915879 TACTATAATA
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
60 3 0.04
61 52 0.71
62 18 0.25
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.35
Consensus pattern (61 bp):
AAAATTACTATAATGCCCTTTAACCATAATAACGAAAATACCCCTCATAGTATAATTTACC
Found at i:6915901 original size:25 final size:25
Alignment explanation
Indices: 6915851--6915903 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
6915841 AATTAGCTTA
*
6915851 AATTACTATAATGCCCTTTAACCAT
1 AATTACTATAATGACCTTTAACCAT
*
6915876 AATTACTATAAT-ACCTTCTAATCAT
1 AATTACTATAATGACCTT-TAACCAT
6915901 AAT
1 AAT
6915904 ATGAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.38
Consensus pattern (25 bp):
AATTACTATAATGACCTTTAACCAT
Found at i:6916245 original size:25 final size:26
Alignment explanation
Indices: 6916217--6916275 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
6916207 ACCCTCTAAT
*
6916217 CATAATTACGAAAAT-CACTTCTTAC
1 CATAATTACGAAAATACACTTCATAC
* *
6916242 CATAATTATGAAAATACTCTTCATAC
1 CATAATTACGAAAATACACTTCATAC
*
6916268 TATAATTA
1 CATAATTA
6916276 ACTAAAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.36
Consensus pattern (26 bp):
CATAATTACGAAAATACACTTCATAC
Found at i:6916283 original size:86 final size:87
Alignment explanation
Indices: 6916152--6916317 Score: 221
Period size: 86 Copynumber: 1.9 Consensus size: 87
6916142 ATGCCCCTCC
* ** * *
6916152 TACCATAATTATGAAAAATACCTCTCATATTACAATTTGTCAAAATTACTATATTACCCTCTAAT
1 TACCATAATTATGAAAAATACCTCTCATACTACAATTACTCAAAATTACTATAATACCCTCTAAC
*
6916217 CATAATTACGAAAATCACTTCT
66 CATAATTACAAAAATCACTTCT
* *
6916239 TACCATAATTATG-AAAATA-CTCTTCATACTATAATTAACT-AAAATTACTATAATACCCTTTA
1 TACCATAATTATGAAAAATACCTC-TCATACTACAATT-ACTCAAAATTACTATAATACCCTCTA
6916301 ACCATAATTACAAAAAT
64 ACCATAATTACAAAAAT
6916318 TAACTTTCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 3 0.04
86 52 0.75
87 14 0.20
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.35
Consensus pattern (87 bp):
TACCATAATTATGAAAAATACCTCTCATACTACAATTACTCAAAATTACTATAATACCCTCTAAC
CATAATTACAAAAATCACTTCT
Found at i:6916287 original size:405 final size:405
Alignment explanation
Indices: 6915554--6916308 Score: 891
Period size: 405 Copynumber: 1.9 Consensus size: 405
6915544 TTGACAAGTG
** * *
6915554 AATTACATACATCCAAATTGACTATAATGCTATTTTTTCTATGATTAACTAAAATTACTATAATG
1 AATTACATACATCCAAATTGACTATAACACCATTCTTTCTATGATTAACTAAAATTACTATAATG
* * ** * *
6915619 CTCTTTTCTTTAACATTACTAAAATACCCTCTTACCATAATTGGCCAAAATTACTATAATGCCCG
66 CTCTCTACTACAACATTACTAAAATACCCTCTTACAATAATTGGCCAAAATTACTATAATGCCCC
* * * *
6915684 TACAATCATAATTATGAAAATGCTCTCTCACCATCATTTGCAAAAATAACTATAATGCCCTTCAT
131 TACAACCAGAATTATGAAAATGCTCTCTCAACATCATTTGCAAAAATAACTATAATGCCCCTCAT
** * * *
6915749 ACCATAATTATGAAAATATTTTTCATATTATAATTTACCAAAATTACTATAATACCTTCTAATCA
196 ACCATAATTATGAAAATACCTCTCATATTACAATTTACCAAAATTACTATAATACCCTCTAATCA
* ** * * * * *
6915814 TAATAACGAAAATACCCCTCATAGTATAATTAGCTTAAATTACTATAATGCCCTTTAACCATAAT
261 TAATAACGAAAATACACCTCATACCATAATTA-CTGAAAATACTATAATACCATTTAACCAAAAT
*
6915879 TACTATAATA-CCTTCTAATCATAATATGAAATTAATCTCGTTAGAAATTATCATAATACCATTT
325 TACTATAATACCCTT-TAACCATAATATGAAATTAATCTCGTTAGAAATTATCATAATACCATTT
6915943 TAATTACTTAACAAGCA
389 TAATTACTTAACAAGCA
* * * *
6915960 AATTACATGCATCCAAATTGACTGTAACACCCTTCTTTCTATGATTAA-TTAAATTACTATAATG
1 AATTACATACATCCAAATTGACTATAACACCATTCTTTCTATGATTAACTAAAATTACTATAATG
* * *
6916024 -TC-CTACTAACAACATTACTAAAATACTTCTTTTACAATAATTGGCCAAAATTATTATAATGCC
66 CTCTCTACT-ACAACATTACTAAAATAC-CCTCTTACAATAATTGGCCAAAATTACTATAATGCC
* * * *
6916087 CCTATAACCAGAATTATCG-AAATG-TC-CTCCAAATATC-TTTGCTAAAATAATTATAATGCCC
129 CCTACAACCAGAATTAT-GAAAATGCTCTCT-C-AACATCATTTGCAAAAATAACTATAATGCCC
* ** *
6916148 CTCCTACCATAATTATGAAAAATACCTCTCATATTACAATTTGTCAAAATTACTATATTACCCTC
191 CTCATACCATAATTATG-AAAATACCTCTCATATTACAATTTACCAAAATTACTATAATACCCTC
* * * * * *
6916213 TAATCATAATTACGAAAAT-CACTTCTTACCATAATTA-TGAAAATACTCTTCATACTATAATTA
255 TAATCATAATAACGAAAATACACCTCATACCATAATTACTGAAAATACT-ATAATACCAT--TTA
*
6916276 ACTAAAATTACTATAATACCCTTTAACCATAAT
317 ACCAAAATTACTATAATACCCTTTAACCATAAT
6916309 TACAAAAATT
Statistics
Matches: 289, Mismatches: 50, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
402 8 0.03
403 10 0.03
404 71 0.25
405 154 0.53
406 46 0.16
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (405 bp):
AATTACATACATCCAAATTGACTATAACACCATTCTTTCTATGATTAACTAAAATTACTATAATG
CTCTCTACTACAACATTACTAAAATACCCTCTTACAATAATTGGCCAAAATTACTATAATGCCCC
TACAACCAGAATTATGAAAATGCTCTCTCAACATCATTTGCAAAAATAACTATAATGCCCCTCAT
ACCATAATTATGAAAATACCTCTCATATTACAATTTACCAAAATTACTATAATACCCTCTAATCA
TAATAACGAAAATACACCTCATACCATAATTACTGAAAATACTATAATACCATTTAACCAAAATT
ACTATAATACCCTTTAACCATAATATGAAATTAATCTCGTTAGAAATTATCATAATACCATTTTA
ATTACTTAACAAGCA
Found at i:6916430 original size:61 final size:60
Alignment explanation
Indices: 6916354--6916492 Score: 190
Period size: 61 Copynumber: 2.3 Consensus size: 60
6916344 CCTCTCCTAT
*
6916354 CATAATTATGAAAATATTTCTCATATTATA-ATTGGTCAAAATTACTATAATACCCACTAAG
1 CATAATTATGAAAATATTT-TCATATTATATATT-ATCAAAATTACTATAATACCCACTAAG
** * **
6916415 CATAATTACAAAAATACCTTTCATATTATATATTATCAAAATTACTATAATACCTTCTAAG
1 CATAATTATGAAAATA-TTTTCATATTATATATTATCAAAATTACTATAATACCCACTAAG
6916476 CATAATTATGAAAATAT
1 CATAATTATGAAAATAT
6916493 CTTTTTGATT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
61 62 0.93
62 5 0.07
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (60 bp):
CATAATTATGAAAATATTTTCATATTATATATTATCAAAATTACTATAATACCCACTAAG
Found at i:6917100 original size:25 final size:25
Alignment explanation
Indices: 6917071--6917130 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
6917061 AATTAGTTTA
6917071 AATTACTATAATACCTTTTAACCAT
1 AATTACTATAATACCTTTTAACCAT
6917096 AATTACTATAATACCTTTTAACCAT
1 AATTACTATAATACCTTTTAACCAT
6917121 AATTACTATA
1 AATTACTATA
6917131 TGAAATTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (25 bp):
AATTACTATAATACCTTTTAACCAT
Found at i:6917472 original size:25 final size:26
Alignment explanation
Indices: 6917444--6917502 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
6917434 ACCCTCTAAT
*
6917444 CATAATTACGAAAAT-CACTTCTTAC
1 CATAATTACGAAAATACACTTCATAC
* *
6917469 CATAATTATGAAAATACTCTTCATAC
1 CATAATTACGAAAATACACTTCATAC
*
6917495 TATAATTA
1 CATAATTA
6917503 GCTAAAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.36
Consensus pattern (26 bp):
CATAATTACGAAAATACACTTCATAC
Found at i:6925991 original size:61 final size:61
Alignment explanation
Indices: 6925938--6926057 Score: 179
Period size: 61 Copynumber: 2.0 Consensus size: 61
6925928 ATATTTCTCG
* *
6925938 TATTATAATTGGTCAAAATTACTATAATACCCGT-TAAGCATAATTACAAAAATACCCTTCA
1 TATTATAATTGATCAAAATTACTATAATACCC-TCTAAGCATAATTACGAAAATACCCTTCA
* * *
6925999 TATTATAATTTATCAAAATTACTATATTACCCTCTAAGTATAATTACGAAAATACCCTT
1 TATTATAATTGATCAAAATTACTATAATACCCTCTAAGCATAATTACGAAAATACCCTT
6926058 TTGATTACTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 1 0.02
61 52 0.98
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (61 bp):
TATTATAATTGATCAAAATTACTATAATACCCTCTAAGCATAATTACGAAAATACCCTTCA
Found at i:6926252 original size:26 final size:26
Alignment explanation
Indices: 6926216--6926266 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6926206 TCAACTTAAA
* *
6926216 TTACTATAATATTCCTCTTAACATAT
1 TTACTAAAATATACCTCTTAACATAT
*
6926242 TTACTAAAATATACCTCTTACCATA
1 TTACTAAAATATACCTCTTAACATA
6926267 ATTGATCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (26 bp):
TTACTAAAATATACCTCTTAACATAT
Found at i:6927177 original size:47 final size:47
Alignment explanation
Indices: 6927125--6927219 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
6927115 AGGTAGTTCC
* **
6927125 TCTAGTACCAATTAAAATTGCT-AACTTTTTTCAAAATTGATTAAAAT
1 TCTAGTACCAATTAAAATT-ATGAACTTTTTTCAAAATCAATTAAAAT
6927172 TCTAGTACCAATTAAAATTATGAACTTTTTTCAAAATCAATTAAAAT
1 TCTAGTACCAATTAAAATTATGAACTTTTTTCAAAATCAATTAAAAT
6927219 T
1 T
6927220 GGTTTCCAGC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.02
47 43 0.98
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.40
Consensus pattern (47 bp):
TCTAGTACCAATTAAAATTATGAACTTTTTTCAAAATCAATTAAAAT
Found at i:6928395 original size:2 final size:2
Alignment explanation
Indices: 6928388--6928415 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6928378 TTTTACCTTG
6928388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6928416 CAATTCGACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6929492 original size:28 final size:28
Alignment explanation
Indices: 6929452--6929512 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
6929442 CATTTTAAAC
*
6929452 TCCACAAGCCAACTTCCAAAAGGTATAG
1 TCCACAAGACAACTTCCAAAAGGTATAG
6929480 TCCACAAGACAACTTCCAAAAGGTATAG
1 TCCACAAGACAACTTCCAAAAGGTATAG
6929508 TCCAC
1 TCCAC
6929513 TGCCAGCAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.39, C:0.30, G:0.13, T:0.18
Consensus pattern (28 bp):
TCCACAAGACAACTTCCAAAAGGTATAG
Found at i:6930425 original size:14 final size:13
Alignment explanation
Indices: 6930405--6930434 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6930395 ATTGGAATTG
*
6930405 ATTTTTAAAAAAT
1 ATTTTTTAAAAAT
6930418 ATTTTTTAAAAAT
1 ATTTTTTAAAAAT
6930431 ATTT
1 ATTT
6930435 ATAATCTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTTTTAAAAAT
Found at i:6930641 original size:14 final size:14
Alignment explanation
Indices: 6930624--6930664 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
6930614 AGAATAATTG
6930624 TATTTTATTAATAA
1 TATTTTATTAATAA
6930638 TATTTTATATAA-AA
1 TATTTTAT-TAATAA
*
6930652 TATTATATTAATA
1 TATTTTATTAATA
6930665 TAAAAATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 3 0.12
14 18 0.75
15 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TATTTTATTAATAA
Found at i:6930798 original size:15 final size:16
Alignment explanation
Indices: 6930778--6930816 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
6930768 TTAAAGTAGT
6930778 AATATTTAT-TATTAA
1 AATATTTATATATTAA
6930793 AATATTTATACTATTAA
1 AATATTTATA-TATTAA
6930810 AATATTT
1 AATATTT
6930817 GTATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.41
17 13 0.59
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTTATATATTAA
Done.