Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 38 of 106
Found at i:7081263 original size:31 final size:32
Alignment explanation
Indices: 7081228--7081288 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
7081218 CTAATCTGGG
*
7081228 CTTAA-AGTACCAGCTAAACTGAGTTTAAAAT
1 CTTAATAGTACCAACTAAACTGAGTTTAAAAT
* *
7081259 CTTAATCGTACCAACTAAACTGGGTTTAAA
1 CTTAATAGTACCAACTAAACTGAGTTTAAA
7081289 TATCATTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 5 0.19
32 21 0.81
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (32 bp):
CTTAATAGTACCAACTAAACTGAGTTTAAAAT
Found at i:7081785 original size:26 final size:26
Alignment explanation
Indices: 7081749--7081801 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7081739 CATGCAGATC
*
7081749 AATGCCTTTCTCATGATACAAATACA
1 AATGCCTTTCTCAAGATACAAATACA
* *
7081775 AATGCCTTTCTTAAGATACACATACA
1 AATGCCTTTCTCAAGATACAAATACA
7081801 A
1 A
7081802 GTGTGAATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (26 bp):
AATGCCTTTCTCAAGATACAAATACA
Found at i:7082090 original size:125 final size:122
Alignment explanation
Indices: 7081930--7082211 Score: 300
Period size: 125 Copynumber: 2.3 Consensus size: 122
7081920 TTTGTTATGC
* * *
7081930 AGATGTGAACGC-AATGTCTTTC-CTATGATGTACATGTAATTAATGCAAATGCAAATGCAAATA
1 AGATGTGAATGCAAATGTCTTTCTC-ATGATGCACATGTAACTAATGCAAATGCAAAT----ATA
* * * **
7081993 TCTTT-TTTTTAGACCAAATGTCTTTCTTATGATGCAGATGTAAATGTCTTTTTTGTAATAT
61 TCTTTATTTTTACACCAAACGTCTTTCTTATGATGCAAATACAAATGTCTTTTTTGTAATAT
* * * *
7082054 AGATGTGAATGCAAATGTCTTTCTCATGTTGCACATGTGACTGATGCAAATGCAAATATATTTTT
1 AGATGTGAATGCAAATGTCTTTCTCATGATGCACATGTAACTAATGCAAATGCAAATATATCTTT
* * * *
7082119 AAAATTTTTACACCAAACGTCTTTCTTATGATGTAAATACGAATGTCTTTTTTGTGATGT
66 ---ATTTTTACACCAAACGTCTTTCTTATGATGCAAATACAAATGTCTTTTTTGTAATAT
* * *
7082179 AAATGTAAATCCAAATGTCTTTCTCATGATGCA
1 AGATGTGAATGCAAATGTCTTTCTCATGATGCA
7082212 TATACGAGTG
Statistics
Matches: 132, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
121 7 0.05
124 11 0.08
125 113 0.86
126 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (122 bp):
AGATGTGAATGCAAATGTCTTTCTCATGATGCACATGTAACTAATGCAAATGCAAATATATCTTT
ATTTTTACACCAAACGTCTTTCTTATGATGCAAATACAAATGTCTTTTTTGTAATAT
Found at i:7082209 original size:32 final size:32
Alignment explanation
Indices: 7082149--7082209 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
7082139 CTTTCTTATG
* * **
7082149 ATGTAAATACGAATGTCTTTTTTGTGATGTAA
1 ATGTAAATACAAATGTCTTTCTCATGATGTAA
*
7082181 ATGTAAATCCAAATGTCTTTCTCATGATG
1 ATGTAAATACAAATGTCTTTCTCATGATG
7082210 CATATACGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (32 bp):
ATGTAAATACAAATGTCTTTCTCATGATGTAA
Found at i:7082229 original size:125 final size:125
Alignment explanation
Indices: 7081998--7082243 Score: 303
Period size: 125 Copynumber: 2.0 Consensus size: 125
7081988 AAATATCTTT
* * * ** * *
7081998 TTTTTAGACCAAATGTCTTTCTTATGATGCAGATGTAAATGTCTTTTTTGTAATATAGATGTGAA
1 TTTTTACACCAAACGTCTTTCTTATGATGCAAATACAAATGTCTTTTTTGTAATATAAATGTAAA
* * ** * *
7082063 TGCAAATGTCTTTCTCATGTTGCACATGTGACTGATGCAAATGCAAATATATTTTTAAAA
66 TCCAAATGTCTTTCTCATGATGCACATACGACTGATCCAAATACAAATATATTTTTAAAA
* * * *
7082123 TTTTTACACCAAACGTCTTTCTTATGATGTAAATACGAATGTCTTTTTTGTGATGTAAATGTAAA
1 TTTTTACACCAAACGTCTTTCTTATGATGCAAATACAAATGTCTTTTTTGTAATATAAATGTAAA
* * * *
7082188 TCCAAATGTCTTTCTCATGATGCATATACGAGTGATCCAAATACGAATATCTTTTT
66 TCCAAATGTCTTTCTCATGATGCACATACGACTGATCCAAATACAAATATATTTTT
7082244 TATTTTTTAA
Statistics
Matches: 100, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
125 100 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.41
Consensus pattern (125 bp):
TTTTTACACCAAACGTCTTTCTTATGATGCAAATACAAATGTCTTTTTTGTAATATAAATGTAAA
TCCAAATGTCTTTCTCATGATGCACATACGACTGATCCAAATACAAATATATTTTTAAAA
Found at i:7083637 original size:21 final size:21
Alignment explanation
Indices: 7083600--7083647 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7083590 TTTGTTTGCT
* *
7083600 TTTTTTTCTTT-TTTTTTGTCA
1 TTTTTTTCTTTACTTTTTCT-A
7083621 TTTTTTTCTTTACTTTTTCTA
1 TTTTTTTCTTTACTTTTTCTA
7083642 TTTTTT
1 TTTTTT
7083648 GAAACATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.06, C:0.10, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTTTTCTTTACTTTTTCTA
Found at i:7088014 original size:18 final size:17
Alignment explanation
Indices: 7087961--7088016 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 17
7087951 AAAAAAAAAC
7087961 TCTTTTTGTTTGCATTTTCT
1 TCTTTTT-TTTGC-TTTT-T
*
7087981 TCTTTTTTTGGACTTTTT
1 TCTTTTTTTTG-CTTTTT
7087999 TCTTTGTTTTTGCTTTTT
1 TCTTT-TTTTTGCTTTTT
7088017 GTAGAAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 12 0.38
19 12 0.38
20 8 0.25
ACGTcount: A:0.04, C:0.12, G:0.11, T:0.73
Consensus pattern (17 bp):
TCTTTTTTTTGCTTTTT
Found at i:7090710 original size:18 final size:18
Alignment explanation
Indices: 7090689--7090723 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7090679 TTAAAATTTT
*
7090689 CATCATTATCATCATTAC
1 CATCATCATCATCATTAC
*
7090707 CATCATCATCATTATTA
1 CATCATCATCATCATTA
7090724 TTATTATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.00, T:0.40
Consensus pattern (18 bp):
CATCATCATCATCATTAC
Found at i:7099518 original size:6 final size:6
Alignment explanation
Indices: 7099507--7099544 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
7099497 TGAAGGGAGA
7099507 AAAATT AAAATT AAAATT AAAA-T AAAA-T AAAA-T AAAAT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAAT
7099545 AAATATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 15 0.48
6 16 0.52
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (6 bp):
AAAATT
Found at i:7099534 original size:5 final size:5
Alignment explanation
Indices: 7099507--7099547 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
7099497 TGAAGGGAGA
7099507 AAAATT AAAATT AAAATT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAA-T AAAA-T AAAA-T AAAAT AAAAT AAAAT AAAAT AAA
7099548 TATTTTATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 19 0.54
6 16 0.46
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:7101131 original size:18 final size:20
Alignment explanation
Indices: 7101110--7101146 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
7101100 AAAAATCATA
7101110 TTTTTTAAATCAA-ATTTAT
1 TTTTTTAAATCAATATTTAT
7101129 TTTTTTAAATCAATATTT
1 TTTTTTAAATCAATATTT
7101147 CGAATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTTAAATCAATATTTAT
Found at i:7101166 original size:10 final size:11
Alignment explanation
Indices: 7101151--7101182 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
7101141 ATATTTCGAA
7101151 TTTTTAAA-AT
1 TTTTTAAATAT
7101161 TTTTTAAATA-
1 TTTTTAAATAT
7101171 TTTTTAAATAT
1 TTTTTAAATAT
7101182 T
1 T
7101183 AAATTTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 18 0.90
11 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTTAAATAT
Found at i:7101196 original size:22 final size:22
Alignment explanation
Indices: 7101168--7101210 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7101158 AATTTTTTAA
*
7101168 ATATTTTTAAATATTAA-ATTTC
1 ATATTTTAAAAT-TTAATATTTC
7101190 ATATTTTAAAATTTAATATTT
1 ATATTTTAAAATTTAATATTT
7101211 TTTAAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
ATATTTTAAAATTTAATATTTC
Found at i:7105598 original size:14 final size:15
Alignment explanation
Indices: 7105574--7105602 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7105564 CGCCCACGTG
7105574 TTTTTTATTTAAAAA
1 TTTTTTATTTAAAAA
7105589 TTTTTT-TTTAAAAA
1 TTTTTTATTTAAAAA
7105603 AATTTTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTTTATTTAAAAA
Found at i:7107751 original size:28 final size:28
Alignment explanation
Indices: 7107720--7107776 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
7107710 ATATTAAGAT
7107720 TATAATT-TTAATTTTTTTTAGTGGATTC
1 TATAATTGTTAA-TTTTTTTAGTGGATTC
*
7107748 TATATTTGTTAATTTTTTTAGTGGATTC
1 TATAATTGTTAATTTTTTTAGTGGATTC
7107776 T
1 T
7107777 TGTAGCTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.23, C:0.04, G:0.12, T:0.61
Consensus pattern (28 bp):
TATAATTGTTAATTTTTTTAGTGGATTC
Found at i:7108459 original size:2 final size:2
Alignment explanation
Indices: 7108452--7108477 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7108442 TAAACAGGGA
7108452 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7108478 TATCCCGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7109054 original size:40 final size:41
Alignment explanation
Indices: 7108992--7109081 Score: 114
Period size: 40 Copynumber: 2.2 Consensus size: 41
7108982 CTTTCTTAAG
* * *
7108992 TGAAATTTCAATAAGAAGTTTGAAGG-GTTCAAATCCCT-CT
1 TGAAATTTTAATAAGAAATTTG-AGGACTTCAAATCCCTACT
7109032 TGAAATTTTAAT-AGAAAATTTGAGGACTTCAAATCCCTACT
1 TGAAATTTTAATAAG-AAATTTGAGGACTTCAAATCCCTACT
7109073 TGAAATTTT
1 TGAAATTTT
7109082 GAAATTCTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
39 5 0.11
40 28 0.64
41 11 0.25
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (41 bp):
TGAAATTTTAATAAGAAATTTGAGGACTTCAAATCCCTACT
Found at i:7113080 original size:21 final size:20
Alignment explanation
Indices: 7113038--7113080 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7113028 TGAATTTTTA
*
7113038 GAAAAAGAAAATTTTGATTT
1 GAAAAAGAAAATTTTGAATT
7113058 GAAAAAG-AAATTTGATGAATT
1 GAAAAAGAAAATTT--TGAATT
7113079 GA
1 GA
7113081 TGCATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 7 0.35
21 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (20 bp):
GAAAAAGAAAATTTTGAATT
Found at i:7116198 original size:60 final size:60
Alignment explanation
Indices: 7115993--7116338 Score: 491
Period size: 60 Copynumber: 5.7 Consensus size: 60
7115983 CTTTGTGTAG
** * *
7115993 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATTGATTTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTTTGAAACTTTGATTTTCAA
*
7116054 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTTTAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTT-TTTT-GAAACTTTGATTTTCAA
* *
7116116 GGAAAATTGATACTTTCCACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTGATTTTCAA
* ** * *
7116176 GGAAAATTGATACTTTCAACTTTTTCTTAAAAACCT-TTTTTTTTGAAA-TTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTTGAAACTTTGATTTTCAA
7116236 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTGATTTTCAA
* *
7116296 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
7116339 TAATTTTTAT
Statistics
Matches: 257, Mismatches: 21, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
58 1 0.00
59 17 0.07
60 141 0.55
61 52 0.20
62 46 0.18
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTGATTTTCAA
Found at i:7116390 original size:25 final size:23
Alignment explanation
Indices: 7116354--7116428 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 23
7116344 TTTATTTAAA
*
7116354 AAAATAAGATAATAAAACAAAAT
1 AAAATAAAATAATAAAACAAAAT
* *
7116377 AAAAGTGAAAATAAAAAAATAAAAT
1 AAAA-T-AAAATAATAAAACAAAAT
*
7116402 AAAATAAAA-AGTAAAACAAAAAT
1 AAAATAAAATAATAAAAC-AAAAT
7116425 AAAA
1 AAAA
7116429 AAATAAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
22 5 0.12
23 17 0.40
24 2 0.05
25 19 0.44
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (23 bp):
AAAATAAAATAATAAAACAAAAT
Found at i:7116390 original size:30 final size:30
Alignment explanation
Indices: 7116354--7116440 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
7116344 TTTATTTAAA
* *
7116354 AAAATAAGATAATAAAACAAAATAAAAGTG
1 AAAATAAAAAAATAAAACAAAATAAAAGTG
*
7116384 AAAATAAAAAAATAAAATAAAATAAAAAGT-
1 AAAATAAAAAAATAAAACAAAAT-AAAAGTG
* * *
7116414 AAAACAAAAATAAAAAAATAAAATAAA
1 AAAATAAAAA-AATAAAACAAAATAAA
7116441 GGCAAAAAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
30 32 0.64
31 18 0.36
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (30 bp):
AAAATAAAAAAATAAAACAAAATAAAAGTG
Found at i:7116392 original size:5 final size:5
Alignment explanation
Indices: 7116364--7116440 Score: 63
Period size: 5 Copynumber: 15.2 Consensus size: 5
7116354 AAAATAAGAT
*
7116364 AATAA AACAA AATAA AAGTGAA AAT-A AA-AA AATAA AATAA AATAAA
1 AATAA AATAA AATAA AA-T-AA AATAA AATAA AATAA AATAA AAT-AA
*
7116410 AAGTAA AACAA AA-ATA AA-AA AATAA AATAA A
1 AA-TAA AATAA AATA-A AATAA AATAA AATAA A
7116441 GGCAAAAAGA
Statistics
Matches: 61, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
4 10 0.16
5 36 0.59
6 10 0.16
7 5 0.08
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (5 bp):
AATAA
Found at i:7116423 original size:18 final size:17
Alignment explanation
Indices: 7116384--7116436 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
7116374 AATAAAAGTG
*
7116384 AAAATAAAAAAATAAAAT
1 AAAAT-AAAAAATAAAAA
*
7116402 AAAATAAAAAGTAAAACA
1 AAAATAAAAAATAAAA-A
7116420 AAAATAAAAAAATAAAA
1 AAAAT-AAAAAATAAAA
7116437 TAAAGGCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 10 0.33
18 10 0.33
19 10 0.33
ACGTcount: A:0.83, C:0.02, G:0.02, T:0.13
Consensus pattern (17 bp):
AAAATAAAAAATAAAAA
Found at i:7116430 original size:25 final size:24
Alignment explanation
Indices: 7116352--7116440 Score: 71
Period size: 24 Copynumber: 3.7 Consensus size: 24
7116342 TTTTTATTTA
7116352 AAAAAATAAGATAATAAAAC-AAAAT
1 AAAAAATAA-A-AATAAAACAAAAAT
* *
7116377 -AAAAGTGAAAATAAAA-AAATAA-
1 AAAAAATAAAAATAAAACAAA-AAT
7116399 AATAAAATAAAAAGTAAAACAAAAAT
1 AA-AAAATAAAAA-TAAAACAAAAAT
7116425 AAAAAA-ATAAAATAAA
1 AAAAAATA-AAAATAAA
7116441 GGCAAAAAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
22 9 0.17
23 4 0.08
24 19 0.37
25 15 0.29
26 5 0.10
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (24 bp):
AAAAAATAAAAATAAAACAAAAAT
Found at i:7117426 original size:41 final size:41
Alignment explanation
Indices: 7117333--7117539 Score: 279
Period size: 41 Copynumber: 5.0 Consensus size: 41
7117323 TTTGATCAAA
** * * *
7117333 GCTCCTCTAAACAGAGGTTCAACGACTTTGAGAAACATAAATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATT
* * * *
7117376 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
7117417 GCTCCTCTAAACAGAGACACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
7117458 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
7117499 GCTCCTCTAAACAGAGACACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
7117540 ACTCATTGAC
Statistics
Matches: 153, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 121 0.79
42 3 0.02
43 29 0.19
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:7118561 original size:27 final size:26
Alignment explanation
Indices: 7118527--7118582 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
7118517 ACCTTGAGTC
*
7118527 TTTCTTTTTCACTTTTTTT-TTCATTT
1 TTTCTTTTTCA-TTTTTTTCATCATTT
7118553 TTTCATTTTTCATTTTTTTCATCATTT
1 TTTC-TTTTTCATTTTTTTCATCATTT
7118580 TTT
1 TTT
7118583 TTTATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTCTTTTTCATTTTTTTCATCATTT
Found at i:7118570 original size:8 final size:8
Alignment explanation
Indices: 7118542--7118600 Score: 63
Period size: 8 Copynumber: 7.8 Consensus size: 8
7118532 TTTTCACTTT
7118542 TTTTTTCA
1 TTTTTTCA
7118550 TTTTTTCA
1 TTTTTTCA
7118558 -TTTTTCA
1 TTTTTTCA
7118565 TTTTTTTCA
1 -TTTTTTCA
**
7118574 TCATTT--
1 TTTTTTCA
7118580 TTTTTT-A
1 TTTTTTCA
7118587 TTTTTTCA
1 TTTTTTCA
7118595 TTTTTT
1 TTTTTT
7118601 TAAGCATAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 4 0.09
7 13 0.30
8 19 0.44
9 7 0.16
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTTCA
Found at i:7125335 original size:60 final size:60
Alignment explanation
Indices: 7125261--7125547 Score: 355
Period size: 60 Copynumber: 4.7 Consensus size: 60
7125251 TTGTGCAGAA
* *
7125261 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTTGAAAATTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTTGAAACTTTGATTTTCAAGG
*
7125322 -AAATTGATACTTTCAACTTTTCACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAA
1 AAAATTGATACTTTCAACTTTTC-C---T---CAAAAATATTTTTTTTGAAACTTTGATTTTCAA
7125386 GG
59 GG
** * * *
7125388 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAA-TTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTTCAAGG
*
7125447 AAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTTTGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTTCAAGG
* * * *
7125507 AAAATTGATATTTTCAACTTTTCCCCAAAACTAGTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT
7125548 ATTTTTATTT
Statistics
Matches: 197, Mismatches: 19, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
59 53 0.27
60 87 0.44
61 1 0.01
63 1 0.01
64 1 0.01
65 15 0.08
66 11 0.06
67 28 0.14
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTTCAAGG
Found at i:7125492 original size:119 final size:122
Alignment explanation
Indices: 7125261--7125536 Score: 400
Period size: 119 Copynumber: 2.2 Consensus size: 122
7125251 TTGTGCAGAA
* *
7125261 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTTGAAAATTTATTTTTAAGGAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TCATTTTTTTTGAAAATTTATTTTTAAGAAAAT
7125326 TGATACTTTCAACTTTTCACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGG
65 TGATACTTTCAACTTTTCAC--TT--CCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGG
* *
7125388 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTTGAAATTTTATTTTTAAGAAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTTGAAAATTTATTTTTAAG-AAAAT
7125452 TGATACTTTCAACTTTTC-C-T-CAAAAATAATTTTTTT-GAAACTTTGATTTTCAAGG
65 TGATACTTTCAACTTTTCACTTCCAAAAAT-ATTTTTTTGGAAACTTTGATTTTCAAGG
* *
7125507 AAAATTGATATTTTCAACTTTTCCCCAAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAA
7125537 CTAGTTTTTT
Statistics
Matches: 141, Mismatches: 6, Indels: 12
0.89 0.04 0.08
Matches are distributed among these distances:
119 54 0.38
120 8 0.06
122 1 0.01
125 25 0.18
126 22 0.16
127 31 0.22
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (122 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTTGAAAATTTATTTTTAAGAAAATT
GATACTTTCAACTTTTCACTTCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGG
Found at i:7125569 original size:5 final size:5
Alignment explanation
Indices: 7125561--7125646 Score: 67
Period size: 5 Copynumber: 17.6 Consensus size: 5
7125551 TTTATTTAAA
*
7125561 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* *
7125610 AAAGA- AAAGT AAAAC AAAA- ATAAA- AAAAT AAAAT AAA
1 AAA-AT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT AAA
7125647 GGCAAAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
3 3 0.04
4 8 0.12
5 49 0.73
6 3 0.04
7 4 0.06
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:7125570 original size:119 final size:117
Alignment explanation
Indices: 7125340--7125564 Score: 314
Period size: 119 Copynumber: 1.9 Consensus size: 117
7125330 ACTTTCAACT
7125340 TTTCACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAA
1 TTTCACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAA
** *
7125405 CTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGAAAAATTGATAC
66 CTTTTCCTCAAAAACCTTTTTTTT-AAATTTTATTTAAAAAAAAAATTGATAC
* *
7125458 TTTCAACTTTTCCTCAAAAATAATTTTTTT-GAAACTTTGATTTTCAAGGAAAATTGATATTTTC
1 TTTC-ACTTTTCCCCAAAAAT-ATTTTTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTC
* *
7125522 AACTTTTCC-CCAAAA-CTAGTTTTTTT-ATTTTTATTTAAAAAAA
64 AACTTTTCCTCAAAAACCT--TTTTTTTAAATTTTATTTAAAAAAA
7125565 TAAAATAATA
Statistics
Matches: 96, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
117 15 0.16
118 9 0.09
119 64 0.67
120 8 0.08
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.46
Consensus pattern (117 bp):
TTTCACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAA
CTTTTCCTCAAAAACCTTTTTTTTAAATTTTATTTAAAAAAAAAATTGATAC
Found at i:7125597 original size:30 final size:28
Alignment explanation
Indices: 7125561--7125664 Score: 84
Period size: 30 Copynumber: 3.6 Consensus size: 28
7125551 TTTATTTAAA
7125561 AAAATAAAATAATAAAACAAAATAAAAGT
1 AAAATAAAATAATAAAA-AAAATAAAAGT
* * *
7125590 GAAAATAAAAAAAATAAAATAAAGAAAAGT
1 -AAAAT-AAAATAATAAAAAAAATAAAAGT
* * * *
7125620 AAAACAAAAATAAAAAAATAAAATAAAGGC
1 AAAA-TAAAATAATAAAA-AAAATAAAAGT
*
7125650 AAAA-AAAATACTAAA
1 AAAATAAAATAATAAA
7125665 TAAACCTAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
28 9 0.15
29 14 0.24
30 25 0.42
31 11 0.19
ACGTcount: A:0.77, C:0.04, G:0.06, T:0.13
Consensus pattern (28 bp):
AAAATAAAATAATAAAAAAAATAAAAGT
Found at i:7125695 original size:13 final size:14
Alignment explanation
Indices: 7125677--7125705 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7125667 AACCTAATCT
7125677 AATAAATAAA-AAA
1 AATAAATAAATAAA
7125690 AATAAATAAATAAA
1 AATAAATAAATAAA
7125704 AA
1 AA
7125706 ACCTGGAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AATAAATAAATAAA
Found at i:7126691 original size:3 final size:3
Alignment explanation
Indices: 7126678--7126762 Score: 52
Period size: 3 Copynumber: 28.3 Consensus size: 3
7126668 TAAATCTAAG
* * * *
7126678 ATA AAA ATA ATA ATA ATA ATA ATA ATA A-A AGA A-A AGA AAA ATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* *
7126725 TGTA CATA TATA A-A ATA ATA ATA ATA AAA ATA A-A ATA A
1 -ATA -ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7126763 AAATGTAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
2 8 0.12
3 48 0.72
4 11 0.16
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:7126773 original size:13 final size:12
Alignment explanation
Indices: 7126747--7126827 Score: 60
Period size: 13 Copynumber: 6.6 Consensus size: 12
7126737 AAATAATAAT
7126747 AATAAAAA-TAA
1 AATAAAAATTAA
7126758 AATAAAAATGTAA
1 AATAAAAAT-TAA
*
7126771 AATACAAAATAAA
1 AATA-AAAATTAA
*
7126784 AATAAATTAA-AAA
1 AATAAA--AATTAA
7126797 AATAAAAA-TAA
1 AATAAAAATTAA
* *
7126808 ATTAAAAAATAAA
1 AAT-AAAAATTAA
7126821 AATAAAA
1 AATAAAA
7126828 TGAAGAGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 14 0.24
12 11 0.19
13 26 0.45
14 7 0.12
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.20
Consensus pattern (12 bp):
AATAAAAATTAA
Found at i:7126779 original size:7 final size:6
Alignment explanation
Indices: 7126741--7126827 Score: 81
Period size: 6 Copynumber: 14.2 Consensus size: 6
7126731 TATATAAAAT
* *
7126741 AATAAT AATAAA AAT-AA AATAAA AATGTAA AATACAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AAT-AAA AATA-AA AATAAA AATAAA
*
7126790 TTAA-AAA AATAAA AAT-AA ATTAAAA AATAAA AATAAA A
1 --AATAAA AATAAA AATAAA AAT-AAA AATAAA AATAAA A
7126828 TGAAGAGAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
5 11 0.16
6 37 0.54
7 18 0.26
8 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:7126780 original size:40 final size:40
Alignment explanation
Indices: 7126695--7126805 Score: 100
Period size: 40 Copynumber: 2.7 Consensus size: 40
7126685 TAATAATAAT
* * * *
7126695 AATAATAATAAAAGAAAAGAAAAATATATATGTACATATATAA
1 AATAATAAT-AAAG-AAA-AAAAATAAAAATGTACAAATACAA
7126738 AATAATAATAATA-AAAATAAAATAAAAATGTA-AAATACAA
1 AATAATAATAA-AGAAAA-AAAATAAAAATGTACAAATACAA
* **
7126778 AATAAAAATAAATTAAAAAAATAAAAAT
1 AATAATAATAAAGAAAAAAAATAAAAAT
7126806 AAATTAAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
39 12 0.20
40 20 0.34
41 15 0.25
42 2 0.03
43 10 0.17
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (40 bp):
AATAATAATAAAGAAAAAAAATAAAAATGTACAAATACAA
Found at i:7126784 original size:31 final size:30
Alignment explanation
Indices: 7126747--7126827 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
7126737 AAATAATAAT
**
7126747 AATAAAAATAAAATAAAAATGTAAAATACAA
1 AATAAAAATAAAATAAAAAAATAAAA-ACAA
* *
7126778 AATAAAAATAAATTAAAAAAATAAAAATAA
1 AATAAAAATAAAATAAAAAAATAAAAACAA
*
7126808 ATTAAAAAATAAAAATAAAA
1 AAT-AAAAAT-AAAATAAAA
7126828 TGAAGAGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 5 0.12
31 29 0.69
32 8 0.19
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.20
Consensus pattern (30 bp):
AATAAAAATAAAATAAAAAAATAAAAACAA
Found at i:7126786 original size:46 final size:46
Alignment explanation
Indices: 7126686--7126808 Score: 119
Period size: 46 Copynumber: 2.7 Consensus size: 46
7126676 AGATAAAAAT
* * * **
7126686 AATAATAATAATAATAAT-AAAAGAAAAGAAAAATATATATGTACA
1 AATAAAAATAATAATAATAAAAATAAAATAAAAATATATAAATACA
* *
7126731 TATATAAAATAATAATAATAAAAATAAAATAAAAATGTA-AAATACAA
1 AATA-AAAATAATAATAATAAAAATAAAATAAAAATATATAAATAC-A
*
7126778 AATAAAAATAA-ATTAA-AAAAATAAAAATAAA
1 AATAAAAATAATAATAATAAAAAT-AAAATAAA
7126809 TTAAAAAATA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
44 6 0.09
45 15 0.23
46 24 0.37
47 20 0.31
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.24
Consensus pattern (46 bp):
AATAAAAATAATAATAATAAAAATAAAATAAAAATATATAAATACA
Found at i:7126798 original size:19 final size:18
Alignment explanation
Indices: 7126735--7126826 Score: 98
Period size: 18 Copynumber: 4.9 Consensus size: 18
7126725 TGTACATATA
*
7126735 TAAAATAATAATAATAAA-
1 TAAAA-AATAAAAATAAAT
*
7126753 -AATAAAATAAAAATGTAAAA
1 TAA-AAAATAAAAA--TAAAT
*
7126773 TACAAAATAAAAATAAAT
1 TAAAAAATAAAAATAAAT
7126791 TAAAAAAATAAAAATAAAT
1 T-AAAAAATAAAAATAAAT
7126810 TAAAAAATAAAAATAAA
1 TAAAAAATAAAAATAAA
7126827 ATGAAGAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
17 9 0.14
18 23 0.36
19 21 0.33
20 10 0.16
21 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.22
Consensus pattern (18 bp):
TAAAAAATAAAAATAAAT
Found at i:7126817 original size:37 final size:36
Alignment explanation
Indices: 7126734--7126827 Score: 109
Period size: 37 Copynumber: 2.5 Consensus size: 36
7126724 ATGTACATAT
* *
7126734 ATAAAATAATAATAATAAAAATAAAATAAAAATGTAAA
1 ATAAAA-AATAAAAATAAAAAAAAAATAAAAA-GTAAA
*
7126772 ATACAAAATAAAAATAAATTAAAAAAATAAAAA-TAAA
1 ATAAAAAATAAAAATAAA--AAAAAAATAAAAAGTAAA
*
7126809 TTAAAAAATAAAAATAAAA
1 ATAAAAAATAAAAATAAAA
7126828 TGAAGAGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
35 1 0.02
37 31 0.63
38 5 0.10
39 12 0.24
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.21
Consensus pattern (36 bp):
ATAAAAAATAAAAATAAAAAAAAAATAAAAAGTAAA
Found at i:7126828 original size:19 final size:19
Alignment explanation
Indices: 7126735--7126828 Score: 90
Period size: 19 Copynumber: 5.0 Consensus size: 19
7126725 TGTACATATA
*
7126735 TAAAATAATAATAATAAAA-
1 TAAAA-AATAAAAATAAAAT
*
7126754 -ATAAAATAAAAATGTAAAA-
1 TAAAAAATAAAAA--TAAAAT
*
7126773 TACAAAATAAAAAT-AAAT
1 TAAAAAATAAAAATAAAAT
7126791 TAAAAAAATAAAAAT-AAAT
1 T-AAAAAATAAAAATAAAAT
7126810 TAAAAAATAAAAATAAAAT
1 TAAAAAATAAAAATAAAAT
7126829 GAAGAGAAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
17 10 0.15
18 18 0.28
19 26 0.40
20 11 0.17
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.22
Consensus pattern (19 bp):
TAAAAAATAAAAATAAAAT
Found at i:7127816 original size:16 final size:16
Alignment explanation
Indices: 7127797--7127831 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7127787 TTTGATGACA
*
7127797 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
7127813 TATCCTTAACAATTGG
1 TATCCTTAACAATTGG
7127829 TAT
1 TAT
7127832 GAGCTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:7133189 original size:12 final size:11
Alignment explanation
Indices: 7133170--7133199 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7133160 TGTTTTGTGG
7133170 TTTTTTTTTAT
1 TTTTTTTTTAT
7133181 TTTTATTTTTAT
1 TTTT-TTTTTAT
7133193 TTTTTTT
1 TTTTTTT
7133200 GTTGACAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTAT
Found at i:7136433 original size:16 final size:16
Alignment explanation
Indices: 7136408--7136438 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7136398 ACAGCGAACG
7136408 TGAAGCCAAAAAAAAT
1 TGAAGCCAAAAAAAAT
*
7136424 TGAAGGCAAAAAAAA
1 TGAAGCCAAAAAAAA
7136439 AAGAAACAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.10, G:0.16, T:0.10
Consensus pattern (16 bp):
TGAAGCCAAAAAAAAT
Found at i:7137473 original size:21 final size:20
Alignment explanation
Indices: 7137449--7137505 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
7137439 TTTTTTTAAT
7137449 ATAAATAAATAAATAGAAAC
1 ATAAATAAATAAATAGAAAC
7137469 AATAAAT-AATAAACATAGAAAC
1 -ATAAATAAAT-AA-ATAGAAAC
* *
7137491 ATTAATAAAAAAATA
1 ATAAATAAATAAATA
7137506 CTTAAATCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 6 0.19
21 15 0.48
22 10 0.32
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.21
Consensus pattern (20 bp):
ATAAATAAATAAATAGAAAC
Found at i:7138040 original size:13 final size:13
Alignment explanation
Indices: 7138022--7138074 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
7138012 GTAAATTACT
*
7138022 AAATGAAACCTTA
1 AAATGAAACCCTA
7138035 AAATGAAACCCTA
1 AAATGAAACCCTA
* *
7138048 AACTAAAACCCTA
1 AAATGAAACCCTA
* *
7138061 AAGTGGAACCCTA
1 AAATGAAACCCTA
7138074 A
1 A
7138075 CACAAGACCC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.51, C:0.23, G:0.09, T:0.17
Consensus pattern (13 bp):
AAATGAAACCCTA
Found at i:7138532 original size:17 final size:17
Alignment explanation
Indices: 7138510--7138544 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7138500 GCTTAATTAT
*
7138510 TTAATTATTTTTAAAAA
1 TTAATTAATTTTAAAAA
7138527 TTAATTAATTTTAAAAA
1 TTAATTAATTTTAAAAA
7138544 T
1 T
7138545 AAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAATTAATTTTAAAAA
Found at i:7143108 original size:21 final size:21
Alignment explanation
Indices: 7143084--7143198 Score: 95
Period size: 21 Copynumber: 5.1 Consensus size: 21
7143074 TTTATTTGCC
7143084 TAATATATTTGTTTGCATGAT
1 TAATATATTTGTTTGCATGAT
*
7143105 TAATATATTTGTTTGTATGAT
1 TAATATATTTGTTTGCATGAT
* *
7143126 TATATTTAATTTGATTGCATGATTAT
1 TA-ATAT-ATTTGTTTGCATG---AT
** *
7143152 TAATATATTTAATTGCTTGATTAT
1 TAATATATTTGTTTGC---ATGAT
*
7143176 TAATATATTTATTTGCATGAT
1 TAATATATTTGTTTGCATGAT
7143197 TA
1 TA
7143199 TATTTTTAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
21 28 0.36
22 3 0.04
23 11 0.14
24 26 0.34
25 3 0.04
26 4 0.05
27 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.54
Consensus pattern (21 bp):
TAATATATTTGTTTGCATGAT
Found at i:7143166 original size:24 final size:24
Alignment explanation
Indices: 7143103--7143199 Score: 108
Period size: 24 Copynumber: 4.1 Consensus size: 24
7143093 TGTTTGCATG
** *
7143103 ATTAATATATTTGTTTGTATGATT
1 ATTAATATATTTAATTGCATGATT
* *
7143127 A-T-ATTTAATTTGATTGCATGATT
1 ATTAATAT-ATTTAATTGCATGATT
*
7143150 ATTAATATATTTAATTGCTTGATT
1 ATTAATATATTTAATTGCATGATT
*
7143174 ATTAATATATTTATTTGCATGATT
1 ATTAATATATTTAATTGCATGATT
7143198 AT
1 AT
7143200 ATTTTTAATT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
22 3 0.05
23 16 0.26
24 40 0.65
25 3 0.05
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (24 bp):
ATTAATATATTTAATTGCATGATT
Found at i:7143209 original size:44 final size:43
Alignment explanation
Indices: 7143084--7143219 Score: 107
Period size: 44 Copynumber: 3.0 Consensus size: 43
7143074 TTTATTTGCC
* * **
7143084 TAATATATTTGTTTGCATGATTAATATATTTGTTTGTATGATTA
1 TAATATATTTATTTGCATGATT-ATATTTTTAATTGTATGATTA
*
7143128 T-ATTTAATTTGA-TTGCATGATTATTAATATATTTAATTGCT-TGATTA
1 TAATAT-ATTT-ATTTGCATGATTA-T-AT-T-TTTAATTG-TATGATTA
* *
7143175 TTAATATATTTATTTGCATGATTATATTTTTAATTATATGTTTA
1 -TAATATATTTATTTGCATGATTATATTTTTAATTGTATGATTA
7143219 T
1 T
7143220 TTGCAAGATT
Statistics
Matches: 73, Mismatches: 8, Indels: 23
0.70 0.08 0.22
Matches are distributed among these distances:
43 6 0.08
44 28 0.38
45 3 0.04
46 2 0.03
47 14 0.19
48 17 0.23
49 3 0.04
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (43 bp):
TAATATATTTATTTGCATGATTATATTTTTAATTGTATGATTA
Found at i:7143346 original size:55 final size:53
Alignment explanation
Indices: 7143276--7143397 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 53
7143266 TATTTACATG
* * * * *
7143276 ATTGCATAATTTATATATTTAATTGCATATTTATTTGCATGATTTATATATTTTTA
1 ATTGCATGA-TTATATATTTAATTGCATATTTAATTACAT-ATTT-TACATTGTTA
* *
7143332 TTTGCATGATTATATATTTAATTGCATGTTTAATTACATATTTTACATTGTTA
1 ATTGCATGATTATATATTTAATTGCATATTTAATTACATATTTTACATTGTTA
7143385 ATTGCATGATTAT
1 ATTGCATGATTAT
7143398 TAATTTATTT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 20 0.34
54 4 0.07
55 27 0.47
56 7 0.12
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (53 bp):
ATTGCATGATTATATATTTAATTGCATATTTAATTACATATTTTACATTGTTA
Found at i:7143347 original size:22 final size:23
Alignment explanation
Indices: 7143305--7143350 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7143295 TAATTGCATA
7143305 TTTATTTGCATGATTTATATATT
1 TTTATTTGCATGATTTATATATT
7143328 TTTATTTGCATGA-TTATATATT
1 TTTATTTGCATGATTTATATATT
7143350 T
1 T
7143351 AATTGCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (23 bp):
TTTATTTGCATGATTTATATATT
Found at i:7143351 original size:20 final size:21
Alignment explanation
Indices: 7143302--7143363 Score: 83
Period size: 20 Copynumber: 3.0 Consensus size: 21
7143292 ATTTAATTGC
7143302 ATATTTATTTGCATGATTTAT
1 ATATTTATTTGCATGATTTAT
7143323 ATATTTTTATTTGCATGA-TTAT
1 ATA--TTTATTTGCATGATTTAT
*
7143345 ATATTTAATTGCATG-TTTA
1 ATATTTATTTGCATGATTTA
7143364 ATTACATATT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
20 14 0.38
21 3 0.08
22 7 0.19
23 13 0.35
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (21 bp):
ATATTTATTTGCATGATTTAT
Found at i:7143457 original size:4 final size:4
Alignment explanation
Indices: 7143450--7143478 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7143440 ATTTGCATAG
7143450 TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
7143479 ATTATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:7143482 original size:3 final size:3
Alignment explanation
Indices: 7143474--7143502 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7143464 ATTTATTTAT
7143474 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7143503 TCATGATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7143545 original size:25 final size:24
Alignment explanation
Indices: 7143505--7143566 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
7143495 TTATTATTTC
* *
7143505 ATGATTTTATATTTATTGTATGAT
1 ATGATGTTATATTTATTGCATGAT
7143529 ATGATGTTATATATTATTGCATGAT
1 ATGATGTTATAT-TTATTGCATGAT
* *
7143554 -TAATATTATATTT
1 ATGATGTTATATTT
7143567 GAATTATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 20 0.61
25 11 0.33
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (24 bp):
ATGATGTTATATTTATTGCATGAT
Found at i:7143676 original size:37 final size:36
Alignment explanation
Indices: 7143535--7143676 Score: 94
Period size: 35 Copynumber: 3.8 Consensus size: 36
7143525 TGATATGATG
* *
7143535 TTATATATT-ATTGCATGATTA-ATATTATATTTG-AA
1 TTATAT-TTGATTTCATGATTATATATT-TATTTGTGA
* * *
7143570 TTATATTTAATTTCATGTTTCTATATTTATTGTGTGCA
1 TTATATTTGATTTCATGATTATATATTTATT-TGTG-A
* ** *
7143608 TAATTACATGATTATACATAATTAT-TAATTTATTATGTGA
1 TTA-TATTTGATT-T-CATGATTATAT-ATTTATT-TGTGA
7143648 TTATATTTGATTTCATGATTATATATTTA
1 TTATATTTGATTTCATGATTATATATTTA
7143677 CATGAATGGT
Statistics
Matches: 81, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
34 2 0.02
35 19 0.23
36 7 0.09
37 13 0.16
38 5 0.06
39 13 0.16
40 5 0.06
41 17 0.21
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (36 bp):
TTATATTTGATTTCATGATTATATATTTATTTGTGA
Found at i:7143735 original size:20 final size:20
Alignment explanation
Indices: 7143687--7143800 Score: 86
Period size: 20 Copynumber: 6.0 Consensus size: 20
7143677 CATGAATGGT
7143687 TATTAATA-TATTTGCATCG-
1 TATTAATATTATTTGCAT-GA
*
7143706 TATTTTATATTA-TTGCATGA
1 TA-TTAATATTATTTGCATGA
7143726 TAATTAATA-TATTTGCATGA
1 T-ATTAATATTATTTGCATGA
*
7143746 TATT-ATA-TATTTACATG-
1 TATTAATATTATTTGCATGA
**
7143763 -ATTGCTATTATTT-CATGA
1 TATTAATATTATTTGCATGA
7143781 TAATTAAT-TTATTTGCATGA
1 T-ATTAATATTATTTGCATGA
7143801 CATTCTTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 21
0.74 0.06 0.20
Matches are distributed among these distances:
16 3 0.04
17 6 0.08
18 17 0.22
19 14 0.18
20 35 0.45
21 3 0.04
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (20 bp):
TATTAATATTATTTGCATGA
Found at i:7145337 original size:135 final size:137
Alignment explanation
Indices: 7145184--7145482 Score: 444
Period size: 139 Copynumber: 2.2 Consensus size: 137
7145174 AAATTATTTC
7145184 ATTTGCCTTTTCAATTTTGTACATAGTTATGGATATAAAT-TTT-TTTT-ACTATGTATTGCATA
1 ATTTGCCTTTTCAATTTTGTACATAGTTATGGATATAAATATTTCTTTTCACTATGTATTGCATA
* *
7145246 CATGTATTGGTAC-GTATATTTTTACCCATGTAAACATTTTTGTATGTACATTATTTCATTTGTT
66 CATGTATT--TACAATATATTTTTACCCATGTAAACATCTTTGTATGTACATTATTTCATTTGTT
7145310 TGAAAAAAT
129 TGAAAAAAT
* * *
7145319 CTTTGCCTTTTCAATTTTGTACATAGTTATGGATATAAATATTTGCTTTTCACTATGTGTTGTAT
1 ATTTGCCTTTTCAATTTTGTACATAGTTATGGATATAAATATTT-CTTTTCACTATGTATTGCAT
* *
7145384 ACATGTATTTACATATATATTTTTATCCATGTAAACATCTTTGTATGTACATTATTTCTTTTGTT
65 ACATGTATTTACA-ATATATTTTTACCCATGTAAACATCTTTGTATGTACATTATTTCATTTGTT
**
7145449 TGGCAAAAT
129 TGAAAAAAT
*
7145458 ATTTGCCTTTTCAATTTTGTGCATA
1 ATTTGCCTTTTCAATTTTGTACATA
7145483 ATTTTGGTTA
Statistics
Matches: 147, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
135 39 0.27
136 3 0.02
137 3 0.02
138 4 0.03
139 98 0.67
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (137 bp):
ATTTGCCTTTTCAATTTTGTACATAGTTATGGATATAAATATTTCTTTTCACTATGTATTGCATA
CATGTATTTACAATATATTTTTACCCATGTAAACATCTTTGTATGTACATTATTTCATTTGTTTG
AAAAAAT
Found at i:7145545 original size:118 final size:118
Alignment explanation
Indices: 7145408--7145640 Score: 306
Period size: 118 Copynumber: 2.0 Consensus size: 118
7145398 ATATATTTTT
* * * *
7145408 ATCCATGTAAACATCTTTGTATGTACATTATTTCTTTTGTTTGGCAAAATATTTGCCTTTTCAAT
1 ATCCATGTAAACATCTTTGTATGTACACTATTTCATTTGTTTGGAAAAATATTTACCTTTTCAAT
* *** **
7145473 TTTGTGCATAATTTTGGTTATGAATTCTTGTTT-TTGTTATGTATTGCATATAG
66 TTTGTACATAATTTTAAATATGAATTCTT-TTTGTTACTATGTATTGCATATAG
** * * *
7145526 ATCCATGTAAACATCTTTGTATGTATGCTATTTCATTTGTTTGGAAAAATCTTTACCTTTTTAGT
1 ATCCATGTAAACATCTTTGTATGTACACTATTTCATTTGTTTGGAAAAATATTTACCTTTTCAAT
*
7145591 TTTGTACATAGTTTTAAATATGAATTCTTTTTGTTACTATGTATTGCATA
66 TTTGTACATAATTTTAAATATGAATTCTTTTTGTTACTATGTATTGCATA
7145641 CATGTATTTG
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
117 3 0.03
118 95 0.97
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.50
Consensus pattern (118 bp):
ATCCATGTAAACATCTTTGTATGTACACTATTTCATTTGTTTGGAAAAATATTTACCTTTTCAAT
TTTGTACATAATTTTAAATATGAATTCTTTTTGTTACTATGTATTGCATATAG
Found at i:7148030 original size:35 final size:34
Alignment explanation
Indices: 7147979--7148093 Score: 124
Period size: 35 Copynumber: 3.3 Consensus size: 34
7147969 AACTTTAGAC
** * *
7147979 TTTTTTAATGTGATCTTTGATGTGAATCTCTAAAA
1 TTTTTTAATGAAATC-TTGATGTGTATCTCTAAGA
*
7148014 TTTTTTAATGAAATCTTGAATATGTATCTCTAAGA
1 TTTTTTAATGAAATCTTG-ATGTGTATCTCTAAGA
* *
7148049 TTTTTTAAAGTAAATCTTGATGT-TAGCTTCTAAGA
1 TTTTTTAATG-AAATCTTGATGTGTATC-TCTAAGA
7148084 TTTTTTAATG
1 TTTTTTAATG
7148094 TGAATCATAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
34 6 0.09
35 54 0.79
36 8 0.12
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (34 bp):
TTTTTTAATGAAATCTTGATGTGTATCTCTAAGA
Found at i:7148262 original size:18 final size:18
Alignment explanation
Indices: 7148199--7148263 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
7148189 TTTGGAATTA
* *
7148199 TTTAGGACTTTTATGAAT
1 TTTAGAACTTTTACGAAT
* * *
7148217 TTTGGAACCTTTCCGAAT
1 TTTAGAACTTTTACGAAT
* * *
7148235 CTTGGGACTTTTACGAAT
1 TTTAGAACTTTTACGAAT
7148253 TTTAGAACTTT
1 TTTAGAACTTT
7148264 GGCAAATCTT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.45
Consensus pattern (18 bp):
TTTAGAACTTTTACGAAT
Found at i:7148272 original size:36 final size:36
Alignment explanation
Indices: 7148203--7148273 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
7148193 GAATTATTTA
* * *
7148203 GGACTTTTATGAATTTTGGAACCTTTCCGAATCTTG
1 GGACTTTTACGAATTTTAGAACCTTTCCAAATCTTG
*
7148239 GGACTTTTACGAATTTTAGAA-CTTTGGCAAATCTT
1 GGACTTTTACGAATTTTAGAACCTTT-CCAAATCTT
7148274 AGAACCTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 4 0.13
36 26 0.87
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (36 bp):
GGACTTTTACGAATTTTAGAACCTTTCCAAATCTTG
Found at i:7148353 original size:32 final size:32
Alignment explanation
Indices: 7148309--7148403 Score: 129
Period size: 32 Copynumber: 3.0 Consensus size: 32
7148299 TTATAAATCT
* *
7148309 TAAA-TCATTTGCATTGCACTCACTATATTCAC
1 TAAATTCA-TTGCATTGCAATCACTATATCCAC
* *
7148341 TAAATTCATTGCATTGCATTCATTATATCCAC
1 TAAATTCATTGCATTGCAATCACTATATCCAC
*
7148373 TAAATTCATTGCATTGCAATCACTACATCCA
1 TAAATTCATTGCATTGCAATCACTATATCCA
7148404 TTGCACTCAC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
32 53 0.95
33 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (32 bp):
TAAATTCATTGCATTGCAATCACTATATCCAC
Found at i:7148407 original size:18 final size:18
Alignment explanation
Indices: 7148384--7148418 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7148374 AAATTCATTG
7148384 CATTGCAATCACTACATC
1 CATTGCAATCACTACATC
*
7148402 CATTGCACTCACTACAT
1 CATTGCAATCACTACAT
7148419 GTTATATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.29
Consensus pattern (18 bp):
CATTGCAATCACTACATC
Found at i:7148510 original size:13 final size:13
Alignment explanation
Indices: 7148492--7148517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7148482 TAAGTTTTTT
7148492 CATTCATTGCATA
1 CATTCATTGCATA
7148505 CATTCATTGCATA
1 CATTCATTGCATA
7148518 TGTTTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
CATTCATTGCATA
Found at i:7148716 original size:22 final size:22
Alignment explanation
Indices: 7148691--7148860 Score: 96
Period size: 22 Copynumber: 7.8 Consensus size: 22
7148681 AATGATCTAT
*
7148691 AAGACCTCCAGGCATAATCTCC
1 AAGACCTCCAGGCATAATCTGC
* * *
7148713 AAGACCTCC-GAGCATGATTTGT
1 AAGACCTCCAG-GCATAATCTGC
* *
7148735 AAGACTTCCAGGCATAAT-TTC
1 AAGACCTCCAGGCATAATCTGC
* * *
7148756 AAGACCTCCAAGCGT-ATCTCC
1 AAGACCTCCAGGCATAATCTGC
* * * * *
7148777 AAAACCTTCAGGCATGATTTGT
1 AAGACCTCCAGGCATAATCTGC
** ** *
7148799 AAGATTTTTAGGCATAATCTTC
1 AAGACCTCCAGGCATAATCTGC
* * *
7148821 AAGACCTCCAAGCATAATTTGT
1 AAGACCTCCAGGCATAATCTGC
7148843 AAGACCTCC-GGACATAAT
1 AAGACCTCCAGG-CATAAT
7148861 TTTTGAAATA
Statistics
Matches: 107, Mismatches: 36, Indels: 10
0.70 0.24 0.07
Matches are distributed among these distances:
20 2 0.02
21 28 0.26
22 76 0.71
23 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (22 bp):
AAGACCTCCAGGCATAATCTGC
Found at i:7148792 original size:64 final size:66
Alignment explanation
Indices: 7148691--7148838 Score: 203
Period size: 64 Copynumber: 2.3 Consensus size: 66
7148681 AATGATCTAT
* * *
7148691 AAGACCTCCAGGCATAATCTCCAAGACCTCCGAGCATGATTTGTAAGACTTCCAGGCATAAT-TT
1 AAGACCTCCAAGCATAATCTCCAAAACCTCAGAGCATGATTTGTAAGACTTCCAGGCATAATCTT
7148755 C
66 C
* * **
7148756 AAGACCTCCAAGCGT-ATCTCCAAAACCTTCAG-GCATGATTTGTAAGATTTTTAGGCATAATCT
1 AAGACCTCCAAGCATAATCTCCAAAACC-TCAGAGCATGATTTGTAAGACTTCCAGGCATAATCT
7148819 TC
65 TC
7148821 AAGACCTCCAAGCATAAT
1 AAGACCTCCAAGCATAAT
7148839 TTGTAAGACC
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
64 37 0.51
65 33 0.46
66 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (66 bp):
AAGACCTCCAAGCATAATCTCCAAAACCTCAGAGCATGATTTGTAAGACTTCCAGGCATAATCTT
C
Found at i:7149122 original size:43 final size:43
Alignment explanation
Indices: 7148935--7149209 Score: 263
Period size: 43 Copynumber: 6.4 Consensus size: 43
7148925 TTGATCATTT
* * *
7148935 AAAGTTTC-AAGCCTCAGTT-TTAGGGGAGCATTTTACTTTTTA
1 AAAGTTTCAAAGCCTCAATTGTGA-GGGAGCATTTTATTTTTTA
* * * **
7148977 AAAGCTCCAAAGCCTCAATTGTGGGGGAGCATTTTA-TTTTCC
1 AAAGTTTCAAAGCCTCAATTGTGAGGGAGCATTTTATTTTTTA
* * * *
7149019 AAAGTTCCAAAGCCTTAGTTGTAAGGGAGCATTTTATTTTTTCA
1 AAAGTTTCAAAGCCTCAATTGTGAGGGAGCATTTTATTTTTT-A
*
7149063 AAAGTTTCAAAGCCTCAATTGTGATGGAGCATTTTATTTTTTA
1 AAAGTTTCAAAGCCTCAATTGTGAGGGAGCATTTTATTTTTTA
* * * *
7149106 AAAGTTTCAAATCCTCAATTATGAGGGAACACTTTATTTTTTAA
1 AAAGTTTCAAAGCCTCAATTGTGAGGGAGCATTTTATTTTTT-A
* * * * *
7149150 AAACGTTTCAAGGCTTTAATTATG-GGGTAGCATTTTATTTTTTTG
1 AAA-GTTTCAAAGCCTCAATTGTGAGGG-AGCATTTTA-TTTTTTA
7149195 AAAGTTTCAAA-CCTC
1 AAAGTTTCAAAGCCTC
7149210 TGTTAAGGAG
Statistics
Matches: 191, Mismatches: 34, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
42 41 0.21
43 66 0.35
44 52 0.27
45 26 0.14
46 6 0.03
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (43 bp):
AAAGTTTCAAAGCCTCAATTGTGAGGGAGCATTTTATTTTTTA
Found at i:7149186 original size:88 final size:85
Alignment explanation
Indices: 7148935--7149209 Score: 248
Period size: 87 Copynumber: 3.2 Consensus size: 85
7148925 TTGATCATTT
* * * * * * * * *
7148935 AAAGTTTCAAGCCTCAGTTTTAGGGGAGCATTTTACTTTTT-AAAAGCTCCAAAGCCTCAATTGT
1 AAAGTTTCAAACCTCAATTATAAGGGAACACTTTATTTTTTAAAAAGTTTCAAAGCCTCAATTGT
**
7148999 GGGGGAGCATTTTA-TTTTCC
66 -GGGGAGCATTTTATTTTTTA
* * * * * * *
7149019 AAAGTTCCAAAGCCTTAGTTGTAAGGGAGCATTTTATTTTTTCAAAAGTTTCAAAGCCTCAATTG
1 AAAGTTTCAAA-CCTCAATTATAAGGGAACACTTTATTTTTTAAAAAGTTTCAAAGCCTCAATTG
*
7149084 TGATGGAGCATTTTATTTTTTA
65 TG-GGGAGCATTTTATTTTTTA
* * * *
7149106 AAAGTTTCAAATCCTCAATTATGAGGGAACACTTTATTTTTTAAAAACGTTTCAAGGCTTTAATT
1 AAAGTTTCAAA-CCTCAATTATAAGGGAACACTTTATTTTTTAAAAA-GTTTCAAAGCCTCAATT
* *
7149171 ATGGGGTAGCATTTTATTTTTTTG
64 GTGGGG-AGCATTTTA-TTTTTTA
7149195 AAAGTTTCAAACCTC
1 AAAGTTTCAAACCTC
7149210 TGTTAAGGAG
Statistics
Matches: 158, Mismatches: 26, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
84 9 0.06
85 27 0.17
86 32 0.20
87 44 0.28
88 29 0.18
89 17 0.11
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (85 bp):
AAAGTTTCAAACCTCAATTATAAGGGAACACTTTATTTTTTAAAAAGTTTCAAAGCCTCAATTGT
GGGGAGCATTTTATTTTTTA
Found at i:7150159 original size:21 final size:21
Alignment explanation
Indices: 7150135--7150233 Score: 76
Period size: 21 Copynumber: 4.5 Consensus size: 21
7150125 GTTATTTGCC
*
7150135 TAATATATTTGTTTGCATGAA
1 TAATATATTTATTTGCATGAA
* *
7150156 TAATATATTTATTTGTATGAT
1 TAATATATTTATTTGCATGAA
*
7150177 TATATTTAATTT-TGTTGCATGATTA
1 TA-ATAT-ATTTAT-TTGCATGA--A
*
7150202 TTAATATATTTATTTTCAT-AA
1 -TAATATATTTATTTGCATGAA
*
7150223 TTATATATTTA
1 TAATATATTTA
7150234 ATTACATGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
20 10 0.16
21 21 0.34
22 4 0.06
23 12 0.19
24 9 0.15
25 4 0.06
26 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (21 bp):
TAATATATTTATTTGCATGAA
Found at i:7150367 original size:64 final size:60
Alignment explanation
Indices: 7150259--7150378 Score: 150
Period size: 64 Copynumber: 1.9 Consensus size: 60
7150249 GCATAATTAT
* *
7150259 TTTAATTGCATATTTTGCATGGTTTATACATTATTATTTACATGATTGCATGATTTATATA
1 TTTAATTGCATATTTTGCATGATTTATACATTATTATTTACATGATTACAT-ATTTATATA
* * * *
7150320 TTTAATTGCATATTTATTTGCATGATTTATATATTTTTGTTTGCATGATTACATATTTA
1 TTTAATTGCATA--T-TTTGCATGATTTATACATTATTATTTACATGATTACATATTTA
7150379 ATTGCATTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
61 12 0.24
63 6 0.12
64 32 0.64
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.53
Consensus pattern (60 bp):
TTTAATTGCATATTTTGCATGATTTATACATTATTATTTACATGATTACATATTTATATA
Found at i:7150451 original size:4 final size:4
Alignment explanation
Indices: 7150444--7150468 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7150434 ATTTGCCTAG
7150444 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
7150469 ATTGCATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:7150663 original size:24 final size:22
Alignment explanation
Indices: 7150616--7150677 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 22
7150606 GATTTCATAA
7150616 TTATATAT-TTGCATGA-ATGG
1 TTATATATATTGCATGATATGG
*
7150636 TTATTCATATATCTGCATGATAT-T
1 TTA-T-ATATAT-TGCATGATATGG
7150660 TTATAT-TATTGCATGATA
1 TTATATATATTGCATGATA
7150678 ATTAATATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
20 12 0.33
21 4 0.11
22 6 0.17
23 2 0.06
24 10 0.28
25 2 0.06
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (22 bp):
TTATATATATTGCATGATATGG
Found at i:7150691 original size:20 final size:20
Alignment explanation
Indices: 7150642--7150693 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
7150632 ATGGTTATTC
* * *
7150642 ATATATCTGCATGATATTTT
1 ATATATTTGCATGATAATTA
7150662 ATAT-TATTGCATGATAATTA
1 ATATAT-TTGCATGATAATTA
7150682 ATATATTTGCAT
1 ATATATTTGCAT
7150694 AACATTCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.48
Consensus pattern (20 bp):
ATATATTTGCATGATAATTA
Found at i:7156047 original size:27 final size:27
Alignment explanation
Indices: 7156016--7156069 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
7156006 GGAAAGCGAT
*
7156016 AGTCAATTATGATTTTATTGATAACTC
1 AGTCAACTATGATTTTATTGATAACTC
*
7156043 AGTCAACTATGATTTTGTTGATAACTC
1 AGTCAACTATGATTTTATTGATAACTC
7156070 TACTATCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (27 bp):
AGTCAACTATGATTTTATTGATAACTC
Found at i:7158525 original size:20 final size:21
Alignment explanation
Indices: 7158500--7158544 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7158490 AAATCATGGG
7158500 ATTTGT-ATGCGAACACAATA
1 ATTTGTAATGCGAACACAATA
* *
7158520 ATTTGTAATGTGAACACAATT
1 ATTTGTAATGCGAACACAATA
7158541 ATTT
1 ATTT
7158545 ATCCATTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (21 bp):
ATTTGTAATGCGAACACAATA
Found at i:7165161 original size:3 final size:3
Alignment explanation
Indices: 7165087--7165144 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
7165077 AAATCAAATA
* * *
7165087 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT -AT AAC ATAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
7165132 AAT CACAT AAT AA
1 AAT -A-AT AAT AA
7165145 AATTAAGAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
2 2 0.04
3 38 0.83
4 4 0.09
5 2 0.04
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:7165187 original size:27 final size:27
Alignment explanation
Indices: 7165124--7165187 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
7165114 GATATAACAT
*
7165124 ATAAAA-ATAATCACATAATAAAATTA
1 ATAAAATATAATCACATAATAAAATAA
* * *
7165150 A-GAAATAATAATCACATAATTAAGTAA
1 ATAAAAT-ATAATCACATAATAAAATAA
7165177 ATAAAATATAA
1 ATAAAATATAA
7165188 AAACAAAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
25 3 0.10
26 1 0.03
27 22 0.73
28 4 0.13
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (27 bp):
ATAAAATATAATCACATAATAAAATAA
Found at i:7165743 original size:41 final size:42
Alignment explanation
Indices: 7165648--7165744 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 42
7165638 GCAAAAAGAT
* *
7165648 AAAAAAGC-AAAA-CAAAAATGAAGCATTAGCAGAGAAATAA
1 AAAAAAGCAAAAATAAAAAATGAAGCATTAGCAAAGAAATAA
* *
7165688 AAAAAAGGTAAAAAATAAAAAATTGAAGCA-TAGTAAAGAAA-AA
1 AAAAAA-G-CAAAAATAAAAAA-TGAAGCATTAGCAAAGAAATAA
7165731 AAAAAAGCAAAAAT
1 AAAAAAGCAAAAAT
7165745 GGAAAGATTG
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
40 6 0.13
41 7 0.15
42 1 0.02
43 12 0.26
44 14 0.30
45 7 0.15
ACGTcount: A:0.69, C:0.06, G:0.13, T:0.11
Consensus pattern (42 bp):
AAAAAAGCAAAAATAAAAAATGAAGCATTAGCAAAGAAATAA
Found at i:7167320 original size:3 final size:3
Alignment explanation
Indices: 7167314--7167351 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
7167304 AGAATTATTA
*
7167314 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7167352 AGTTTTTACG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7167990 original size:21 final size:21
Alignment explanation
Indices: 7167949--7168004 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 21
7167939 ATTTAATTAT
**
7167949 TTAATT-ATTTTTTAAAGAAA
1 TTAATTAATTTTAAAAAGAAA
*
7167969 TTAATTAATTTTAAAAATAAA
1 TTAATTAATTTTAAAAAGAAA
* *
7167990 -TAAATAAATTTAAAA
1 TTAATTAATTTTAAAA
7168005 TAATATTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
TTAATTAATTTTAAAAAGAAA
Found at i:7169856 original size:32 final size:31
Alignment explanation
Indices: 7169754--7169861 Score: 99
Period size: 32 Copynumber: 3.4 Consensus size: 31
7169744 TTAAATGGTT
* *
7169754 TGAAAATTTTTACTTAATATTTTAAAAAGATA
1 TGAAATTTTTTACTTAAT-TTTTAAAATGATA
* * * * *
7169786 TGAAGTTTTTTATTTAATTTTTTAAATCACAA
1 TGAAATTTTTTACTTAATTTTTAAAATGA-TA
*
7169818 TTAAATTTTTTACTTAATCTTTTAAAATGATA
1 TGAAATTTTTTACTTAAT-TTTTAAAATGATA
*
7169850 CGAAATTATTTT
1 TGAAATT-TTTT
7169862 CAAATCAATT
Statistics
Matches: 58, Mismatches: 15, Indels: 5
0.74 0.19 0.06
Matches are distributed among these distances:
31 8 0.14
32 37 0.64
33 13 0.22
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (31 bp):
TGAAATTTTTTACTTAATTTTTAAAATGATA
Found at i:7170872 original size:18 final size:19
Alignment explanation
Indices: 7170840--7170881 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
7170830 TCATAAATTA
7170840 ATAAAATATTATTTTTAAAT
1 ATAAAATATTATTTTT-AAT
7170860 ATAAAATA-T-TTTTTAAT
1 ATAAAATATTATTTTTAAT
7170877 ATAAA
1 ATAAA
7170882 TATAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 1 0.05
20 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAAAATATTATTTTTAAT
Found at i:7170885 original size:23 final size:20
Alignment explanation
Indices: 7170840--7170889 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
7170830 TCATAAATTA
7170840 ATAAAATATTATTTTTAAAT
1 ATAAAATATTATTTTTAAAT
*
7170860 ATAAAATATTTTTTAATATAAAT
1 ATAAAATATTATTT--T-TAAAT
7170883 ATAAAAT
1 ATAAAAT
7170890 TGAATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.50
22 1 0.04
23 12 0.46
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAAAATATTATTTTTAAAT
Found at i:7170914 original size:18 final size:17
Alignment explanation
Indices: 7170875--7170917 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
7170865 ATATTTTTTA
7170875 ATATAAATATAAAATTG
1 ATATAAATATAAAATTG
7170892 A-ATAAATATATAAATAT-
1 ATATAAATATA-AAAT-TG
7170909 ATATAAATA
1 ATATAAATA
7170918 ATTAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 9 0.39
17 6 0.26
18 8 0.35
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
ATATAAATATAAAATTG
Found at i:7171357 original size:21 final size:21
Alignment explanation
Indices: 7171329--7171381 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
7171319 TTCATTTTAT
7171329 TAAAATTAAAAATGATAATAA
1 TAAAATTAAAAATGATAATAA
* ** *
7171350 TTAAATTAATTATTATAATAA
1 TAAAATTAAAAATGATAATAA
7171371 TAAAATTAAAA
1 TAAAATTAAAA
7171382 TTAAATGACA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAAATTAAAAATGATAATAA
Found at i:7171645 original size:18 final size:17
Alignment explanation
Indices: 7171616--7171649 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
7171606 AAAGATTTTT
7171616 AAATAAAAATTAAAATA
1 AAATAAAAATTAAAATA
7171633 AAATAATAAATTAAAAT
1 AAATAA-AAATTAAAAT
7171650 TATATTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAAAAATTAAAATA
Found at i:7176263 original size:21 final size:23
Alignment explanation
Indices: 7176239--7176281 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
7176229 CTCAATCCTC
7176239 ATTTGAATAAA-A-AAATAAAAA
1 ATTTGAATAAATATAAATAAAAA
* *
7176260 ATTTTATTAAATATAAATAAAA
1 ATTTGAATAAATATAAATAAAA
7176282 TTTACATCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 1 0.06
23 8 0.44
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATTTGAATAAATATAAATAAAAA
Found at i:7179722 original size:162 final size:161
Alignment explanation
Indices: 7179502--7180430 Score: 867
Period size: 161 Copynumber: 5.8 Consensus size: 161
7179492 TATTTTGGCC
* * * * * *
7179502 TTTCACACATATCAATCATG-GAAACCAAATTTAATCATTTGGACAAGTTTAATATCATGTATTG
1 TTTCATACATATCAA-C-TGTGAAAACAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTG
* * *
7179566 AAG-TCATCCAAACTGTTAAAATAGAACAATAACAATAACTTTGTATATTTGCCTTTTAACAACA
64 AAGCT-ATCCAAACTGTTAAAATAGAACAATAACAATAAATTTGTATTTTTGCCTTTTAACGACA
* *
7179630 AAAAAAGTCCTAAACAGAGGTAAACAACAATTTT
128 AAAAAAGTCCTAAACAGAGGTAAACAATAACTTT
* *
7179664 TTTCATATATATCAACTGTGAAAATCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTTTTGA
1 TTTCATACATATCAACTGTGAAAA-CAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGA
* * * ** * * *
7179729 GGCTATTCAAACTGTTAAAATAAAACAATAACAGCAAAATTGTATTTTTGCTTTTTAACGATAAG
65 AGCTATCCAAACTGTTAAAATAGAACAATAACAATAAATTTGTATTTTTGCCTTTTAACGACAA-
* * *
7179794 AAAAA-TGCTAAACAGAGATAAACAACAACTTT
129 AAAAAGTCCTAAACAGAGGTAAACAATAACTTT
* * ** *
7179826 TTT-ATATATATCAACTGCGAAAACTAAGTTCAATCATTCAAAAAAGTTTAAGATCATGTATTGA
1 TTTCATACATATCAACTGTGAAAAC-AAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGA
* * * ** * *
7179890 AGCCATCCAAACTGTTAAAATAAAATAATAACAGCAAATTTATATTTTTGCCTTTAAACGACAAA
65 AGCTATCCAAACTGTTAAAATAGAACAATAACAATAAATTTGTATTTTTGCCTTTTAACGACAAA
* * *
7179955 AATAA-TCCTAAATAGATGTAAACGATAACTTT
130 AA-AAGTCCTAAACAGAGGTAAACAATAACTTT
* * ** * * *
7179987 TTT-ACACATATCAA-TCGTAGAAACCAAGTTTTATTATTCGAACAAGTTTAATATCATGTATTG
1 TTTCATACATATCAACT-GT-GAAAACAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTG
* * * *
7180050 AAGCTATCCAAACTGTTAAAACAGAACAATAA-TATCAAA-TTGCA-TTTTGCCTTTTAACGGCA
64 AAGCTATCCAAACTGTTAAAATAGAACAATAACAAT-AAATTTGTATTTTTGCCTTTTAACGACA
* * *** *
7180112 AAAAAAGTCCTAAACAAATGTAAATGTTAGC-TT
128 AAAAAAGTCCTAAACAGAGGTAAACAATAACTTT
* * * * *
7180145 TTTCACACATATCAACTGTGGATACCAAGTTCAATTATTTTG-ATAAGTTTAATATCATGTATTG
1 TTTCATACATATCAACTGT-GAAAACAAGTTCAATCA-TTTGAAAAAGTTTAATATCATGTATTG
* * * * *
7180209 AAGCTATGCAAACTGTTAAAATAGAACAATAACAATAAATTTGTAATTTTACCTATTAACGACAC
64 AAGCTATCCAAACTGTTAAAATAGAACAATAACAATAAATTTGTATTTTTGCCTTTTAACGACAA
* * * *
7180274 AAAAAGTCTTAAATAAAACGTAAACAATAAC-TT
129 AAAAAGTCCTAAA-CAGAGGTAAACAATAACTTT
* * * * * * *
7180307 TTTCATACATATTAACTGTGGAAACTAATTTCAATAATTTGGATAAGTTAAATATCATGTATTGA
1 TTTCATACATATCAACTGTGAAAAC-AAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGA
* * * *** * * *
7180372 AACTATCAAAACTATTAAAATAGAACAATAATTGTTACTTTGTATTTTTACCTTTTAAC
65 AGCTATCCAAACTGTTAAAATAGAACAATAACAATAAATTTGTATTTTTGCCTTTTAAC
7180431 TGCATAAAAA
Statistics
Matches: 640, Mismatches: 108, Indels: 38
0.81 0.14 0.05
Matches are distributed among these distances:
158 7 0.01
159 120 0.19
160 20 0.03
161 247 0.39
162 240 0.38
163 6 0.01
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (161 bp):
TTTCATACATATCAACTGTGAAAACAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAA
GCTATCCAAACTGTTAAAATAGAACAATAACAATAAATTTGTATTTTTGCCTTTTAACGACAAAA
AAAGTCCTAAACAGAGGTAAACAATAACTTT
Found at i:7180442 original size:162 final size:158
Alignment explanation
Indices: 7179502--7180450 Score: 682
Period size: 162 Copynumber: 5.9 Consensus size: 158
7179492 TATTTTGGCC
* * * * *
7179502 TTTCACACATATCAA-TCATGGAAACCAAATTTAATCATTTGGACAAGTTTAATATCATGTATTG
1 TTTCACACATATCAACT-GTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTG
* * * *
7179566 AAG-TCATCCAAACTGTTAAAATAGAACAATAACAATAACTTTGTATATTTGCCTTTTAACAACA
65 AAGCT-AT-CAAACTGTTAAAATAGAACAATAA-TATAAATTTGTAT-TTTACCTTTTAAC-GCA
* * * * * *
7179630 AAAAAAGTCCTAAA-CAGAGGTAAACAACAATTTT
125 AAAAAAGTCTTAAATAAAACGTAAACAATAA-CTT
* * * * * * * *
7179664 TTTCATATATATCAACTGTGAAAATCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTTTTGA
1 TTTCACACATATCAACTGTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTGA
* * * * * * *
7179729 GGCTATTCAAACTGTTAAAATAAAACAATAACAGCAAAATTGTATTTTTGCTTTTTAACG-ATAA
66 AGCTA-TCAAACTGTTAAAATAGAACAATAATA-TAAATTTGTA-TTTTACCTTTTAACGCA-AA
* * * *
7179793 GAAAAATGC-TAAA-CAGA-GATAAACAACAACTT
127 -AAAAGT-CTTAAATAAAACG-TAAACAATAACTT
* * * * * * * *** * *
7179825 TTTTATATATATCAACTGCGAAAACTAAGTTCAATCATTCAAAAAAGTTTAAGATCATGTATTGA
1 TTTCACACATATCAACTGTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTGA
* * * * * * * *
7179890 AGCCATCCAAACTGTTAAAATAAAATAATAACAGCAAATTTATATTTTTGCCTTTAAACGACAAA
66 AGCTAT-CAAACTGTTAAAATAGAACAATAATA-TAAATTTGTA-TTTTACCTTTTAACG-CAAA
* * * *
7179955 AATAA-TCCTAAAT-AGATGTAAACGATAACTT
127 AA-AAGTCTTAAATAAAACGTAAACAATAACTT
* * ** * * * *
7179986 TTTTACACATATCAA-TCGTAGAAACCAAGTTTTATTATTCGAACAAGTTTAATATCATGTATTG
1 TTTCACACATATCAACT-GTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTG
* * *
7180050 AAGCTATCCAAACTGTTAAAACAGAACAATAATATCAAA-TTGCATTTTGCCTTTTAACGGCAAA
65 AAGCTAT-CAAACTGTTAAAATAGAACAATAATAT-AAATTTGTATTTTACCTTTTAAC-GCAAA
* * * *** *
7180114 AAAAGTCCTAAA-CAAATGTAAATGTTAGCTT
127 AAAAGTCTTAAATAAAACGTAAACAATAACTT
* * *
7180145 TTTCACACATATCAACTGTGGATACCAAGTTCAATTATTTTGATAAGTTTAATATCATGTATTGA
1 TTTCACACATATCAACTGTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTGA
* * *
7180210 AGCTATGCAAACTGTTAAAATAGAACAATAACAATAAATTTGTAATTTTACCTATTAACGACACA
66 AGCTAT-CAAACTGTTAAAATAGAACAATAA-TATAAATTTGT-ATTTTACCTTTTAACG-CAAA
7180275 AAAAGTCTTAAATAAAACGTAAACAATAACTT
127 AAAAGTCTTAAATAAAACGTAAACAATAACTT
* * * * *
7180307 TTTCATACATATTAACTGTGGAAACTAATTTCAATAATTTGGATAAGTTAAATATCATGTATTGA
1 TTTCACACATATCAACTGTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTGA
* * * * * *
7180372 AACTATCAAAACTATTAAAATAGAACAATAATTGTTACTTTGTATTTTTACCTTTTAACTGCATA
66 AGCTATC-AAACTGTTAAAATAGAACAATAA-TATAAATTTGTA-TTTTACCTTTTAAC-GCAAA
7180437 AAAAGT-TGTAAATA
127 AAAAGTCT-TAAATA
7180451 GACATAAATT
Statistics
Matches: 654, Mismatches: 102, Indels: 62
0.80 0.12 0.08
Matches are distributed among these distances:
158 2 0.00
159 126 0.19
160 15 0.02
161 247 0.38
162 257 0.39
163 7 0.01
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (158 bp):
TTTCACACATATCAACTGTGGAAACCAAGTTCAATAATTTGGATAAGTTTAATATCATGTATTGA
AGCTATCAAACTGTTAAAATAGAACAATAATATAAATTTGTATTTTACCTTTTAACGCAAAAAAA
GTCTTAAATAAAACGTAAACAATAACTT
Found at i:7181635 original size:13 final size:13
Alignment explanation
Indices: 7181600--7181636 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7181590 ATAAAAGCGA
*
7181600 ATATATAAAAAAC
1 ATATATAAAGAAC
*
7181613 ATATGTAAAGAAC
1 ATATATAAAGAAC
7181626 ATATATAAAGA
1 ATATATAAAGA
7181637 TATTAAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.24
Consensus pattern (13 bp):
ATATATAAAGAAC
Found at i:7185329 original size:9 final size:9
Alignment explanation
Indices: 7185315--7185344 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
7185305 ATGTTGTGGA
7185315 AAGCCTTTG
1 AAGCCTTTG
7185324 AAGCCTTTG
1 AAGCCTTTG
7185333 AAGCCTTTG
1 AAGCCTTTG
7185342 AAG
1 AAG
7185345 TTGAAAGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (9 bp):
AAGCCTTTG
Found at i:7186731 original size:17 final size:17
Alignment explanation
Indices: 7186701--7186734 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7186691 ATTTCTCAAT
* *
7186701 TAAATTGTGTCACTAAA
1 TAAATCGTGCCACTAAA
7186718 TAAATCGTGCCACTAAA
1 TAAATCGTGCCACTAAA
7186735 GTAACTTAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
TAAATCGTGCCACTAAA
Found at i:7192424 original size:2 final size:2
Alignment explanation
Indices: 7192417--7192442 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7192407 TGAGAATCAG
7192417 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7192443 GTCTCATCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7192526 original size:4 final size:4
Alignment explanation
Indices: 7192517--7192541 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7192507 ATTCATGAGA
7192517 TGCC TGCC TGCC TGCC TGCC TGCC T
1 TGCC TGCC TGCC TGCC TGCC TGCC T
7192542 TTCACTGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.48, G:0.24, T:0.28
Consensus pattern (4 bp):
TGCC
Found at i:7196102 original size:2 final size:2
Alignment explanation
Indices: 7196097--7196144 Score: 71
Period size: 2 Copynumber: 24.0 Consensus size: 2
7196087 TCTTCACAAT
*
7196097 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA GT- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
7196139 TA TA TA
1 TA TA TA
7196145 AAGGAGGGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 1 0.02
2 40 0.95
3 1 0.02
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7198881 original size:2 final size:2
Alignment explanation
Indices: 7198874--7198906 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7198864 CCCTAATAAA
7198874 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7198907 CTGAAGATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7205608 original size:2 final size:2
Alignment explanation
Indices: 7205592--7205626 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7205582 TTATTTCATT
*
7205592 TA TA AA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7205627 GCTTACAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7207095 original size:14 final size:15
Alignment explanation
Indices: 7207059--7207097 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
7207049 AATTGTAATT
7207059 ATTTTATATTATAAA
1 ATTTTATATTATAAA
* *
7207074 ATTTTATATTTTCAA
1 ATTTTATATTATAAA
7207089 A-TTTATATT
1 ATTTTATATT
7207098 CAATGTAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTATATTATAAA
Found at i:7207281 original size:16 final size:19
Alignment explanation
Indices: 7207262--7207301 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
7207252 TTAATTTAAG
7207262 TATTAA-TTAA-TATA-TT
1 TATTAATTTAATTATATTT
7207278 TATTAATTTAATTATATTT
1 TATTAATTTAATTATATTT
7207297 TATTA
1 TATTA
7207302 TAAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.29
17 4 0.19
18 4 0.19
19 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTAATTTAATTATATTT
Found at i:7208447 original size:28 final size:27
Alignment explanation
Indices: 7208417--7208495 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 27
7208407 TTGAATTACT
7208417 AAATACAAATAAATAAAACAAAAAAAATA
1 AAATA-AAA-AAATAAAACAAAAAAAATA
** *
7208446 AAATAAAAACTTAAAATAATAAAAAATA
1 AAATAAAAAAATAAAACAA-AAAAAATA
*
7208474 AAATAAAAAAATAAAGCAAAAA
1 AAATAAAAAAATAAAACAAAAA
7208496 TGAAAAAGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
27 11 0.26
28 26 0.62
29 5 0.12
ACGTcount: A:0.78, C:0.05, G:0.01, T:0.15
Consensus pattern (27 bp):
AAATAAAAAAATAAAACAAAAAAAATA
Found at i:7208448 original size:5 final size:5
Alignment explanation
Indices: 7208417--7208481 Score: 55
Period size: 5 Copynumber: 12.6 Consensus size: 5
7208407 TTGAATTACT
*
7208417 AAATA CAAAT- AAATA AAACA AAA-A AAATA AAATAA AAACTTA AAATA
1 AAATA -AAATA AAATA AAATA AAATA AAATA AAAT-A AAA--TA AAATA
7208464 ATAA-A AAATA AAATA AAA
1 A-AATA AAATA AAATA AAA
7208482 AAATAAAGCA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
4 10 0.20
5 26 0.51
6 10 0.20
7 4 0.08
8 1 0.02
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:7208469 original size:15 final size:14
Alignment explanation
Indices: 7208417--7208488 Score: 76
Period size: 13 Copynumber: 5.1 Consensus size: 14
7208407 TTGAATTACT
*
7208417 AAATACAAATAAATA
1 AAATA-AAAAAAATA
*
7208432 AAACAAAAAAAATA
1 AAATAAAAAAAATA
**
7208446 AAAT-AAAAACTTA
1 AAATAAAAAAAATA
7208459 AAATAATAAAAAATA
1 AAATAA-AAAAAATA
7208474 AAAT-AAAAAAATA
1 AAATAAAAAAAATA
7208487 AA
1 AA
7208489 GCAAAAATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
13 21 0.44
14 13 0.27
15 14 0.29
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (14 bp):
AAATAAAAAAAATA
Found at i:7208852 original size:12 final size:12
Alignment explanation
Indices: 7208835--7208859 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7208825 CAACCTCTCT
7208835 TCAAAAAATTCA
1 TCAAAAAATTCA
7208847 TCAAAAAATTCA
1 TCAAAAAATTCA
7208859 T
1 T
7208860 GTTCTTCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (12 bp):
TCAAAAAATTCA
Found at i:7209358 original size:3 final size:3
Alignment explanation
Indices: 7209350--7209487 Score: 84
Period size: 3 Copynumber: 49.3 Consensus size: 3
7209340 AAAAGAAGGA
* *
7209350 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT ACT -AC AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * *
7209395 -AT ACT -AT GTT AAT -AT ACT -AT ATAT AAT AAT -AT AA- CAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* *
7209435 AAT AAT AAT ATT ATAT AAT -AT AAT -AT AAT AAT AA- AAT AAT ACT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
7209478 AAT AAA AAT A
1 AAT AAT AAT A
7209488 GTCCTGTTGA
Statistics
Matches: 102, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
2 19 0.19
3 78 0.76
4 5 0.05
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:7209370 original size:15 final size:15
Alignment explanation
Indices: 7209350--7209487 Score: 84
Period size: 13 Copynumber: 9.9 Consensus size: 15
7209340 AAAAGAAGGA
7209350 AATAATAATAATAAT
1 AATAATAATAATAAT
7209365 AATAATAATAATAAT
1 AATAATAATAATAAT
* *
7209380 -ATACT-ACAAT-AT
1 AATAATAATAATAAT
* **
7209392 AAT-ATACT-ATGTT
1 AATAATAATAATAAT
*
7209405 AAT-ATACT-ATATAT
1 AATAATAATAATA-AT
*
7209419 AATAAT-ATAA-CAT
1 AATAATAATAATAAT
*
7209432 AATAATAATAATATT
1 AATAATAATAATAAT
7209447 ATATAAT-ATAAT-AT
1 A-ATAATAATAATAAT
7209461 AATAATAA-AATAAT
1 AATAATAATAATAAT
* *
7209475 ACTAATAAAAATA
1 AATAATAATAATA
7209488 GTCCTGTTGA
Statistics
Matches: 97, Mismatches: 14, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
12 5 0.05
13 33 0.34
14 25 0.26
15 29 0.30
16 5 0.05
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (15 bp):
AATAATAATAATAAT
Found at i:7209473 original size:37 final size:37
Alignment explanation
Indices: 7209351--7209481 Score: 103
Period size: 35 Copynumber: 3.6 Consensus size: 37
7209341 AAAGAAGGAA
* * *
7209351 ATAATAATAATAATAATAATAATAATAATATACTACAAT
1 ATAATAATAA-AATAATAATAAT-ATTATATAATATAAT
** ** *
7209390 ATAAT-ATACTATGTTAAT-ATACTATAT-ATAATAAT
1 ATAATAATAAAATAATAATAATATTATATAAT-ATAAT
*
7209425 ATAA-CAT--AATAATAATAATATTATATAATATAAT
1 ATAATAATAAAATAATAATAATATTATATAATATAAT
*
7209459 ATAATAATAAAATAATACTAATA
1 ATAATAATAAAATAATAATAATA
7209482 AAAATAGTCC
Statistics
Matches: 71, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
33 6 0.08
34 18 0.25
35 19 0.27
36 2 0.03
37 18 0.25
38 3 0.04
39 5 0.07
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.37
Consensus pattern (37 bp):
ATAATAATAAAATAATAATAATATTATATAATATAAT
Found at i:7209900 original size:60 final size:60
Alignment explanation
Indices: 7209836--7209988 Score: 162
Period size: 60 Copynumber: 2.5 Consensus size: 60
7209826 GAAGTCGTAG
* * *
7209836 ATGAATGATTGAGACGATGCTGCAAGTCTAAAAGCAACCAAAATCGAGTCAAAATTATAA
1 ATGAATGATTGAGACAATGCTGCGAGTCTAAAAGCAACCAAAATCAAGTCAAAATTATAA
** * * * ** * * *
7209896 ATGAATGACCGAGATAATGTTGCGAGTTTAAAAGTGACCAGAATCAAGTCAAGATTATAG
1 ATGAATGATTGAGACAATGCTGCGAGTCTAAAAGCAACCAAAATCAAGTCAAAATTATAA
* * *
7209956 ATAAATGATTGGGACAATGCTACGAGTCTAAAA
1 ATGAATGATTGAGACAATGCTGCGAGTCTAAAA
7209989 ATGATCAAGA
Statistics
Matches: 72, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
60 72 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (60 bp):
ATGAATGATTGAGACAATGCTGCGAGTCTAAAAGCAACCAAAATCAAGTCAAAATTATAA
Found at i:7210017 original size:60 final size:60
Alignment explanation
Indices: 7209942--7210083 Score: 160
Period size: 60 Copynumber: 2.4 Consensus size: 60
7209932 ACCAGAATCA
* * * * ** * *
7209942 AGTCAAGATTATAGATAAATGATTGGGACAATGCTACGAGTCTAAAAATGA-TCAAGATCG
1 AGTCGAGATTGTAGATGAATGATCGAAACAATACTACGAGTCTAAAAATAACT-AAGATCG
* * * *
7210002 AGTTGAGGTTGTAGATGAATGATCGAAACGATATTACGAGTCTAAAAATAACTAAGATCG
1 AGTCGAGATTGTAGATGAATGATCGAAACAATACTACGAGTCTAAAAATAACTAAGATCG
7210062 AGTCGAGATTGTAGATGAATGA
1 AGTCGAGATTGTAGATGAATGA
7210084 CCAAGATGAT
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
60 66 0.99
61 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (60 bp):
AGTCGAGATTGTAGATGAATGATCGAAACAATACTACGAGTCTAAAAATAACTAAGATCG
Found at i:7211213 original size:10 final size:10
Alignment explanation
Indices: 7211197--7211251 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
7211187 TTTAAGTTTT
7211197 TTTTTTTTC-
1 TTTTTTTTCA
*
7211206 TCTTTTTTC-
1 TTTTTTTTCA
*
7211215 TTCTTTTTCA
1 TTTTTTTTCA
7211225 TTCTTTTTTTCA
1 -T-TTTTTTTCA
*
7211237 TTTTTTTTTA
1 TTTTTTTTCA
7211247 TTTTT
1 TTTTT
7211252 GTATTTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
9 15 0.39
10 13 0.34
11 2 0.05
12 8 0.21
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:7211228 original size:13 final size:12
Alignment explanation
Indices: 7211212--7211245 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
7211202 TTTCTCTTTT
7211212 TTCTTCTTTTTCA
1 TTCTT-TTTTTCA
7211225 TTCTTTTTTTCA
1 TTCTTTTTTTCA
7211237 TT-TTTTTTT
1 TTCTTTTTTT
7211246 ATTTTTGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 9 0.43
13 5 0.24
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (12 bp):
TTCTTTTTTTCA
Found at i:7211228 original size:22 final size:22
Alignment explanation
Indices: 7211203--7211244 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7211193 TTTTTTTTTT
7211203 TTCTCTTTTTTC-TTCTTTTTCA
1 TTCT-TTTTTTCATTCTTTTTCA
*
7211225 TTCTTTTTTTCATTTTTTTT
1 TTCTTTTTTTCATTCTTTTT
7211245 TATTTTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.79
Consensus pattern (22 bp):
TTCTTTTTTTCATTCTTTTTCA
Found at i:7216590 original size:7 final size:7
Alignment explanation
Indices: 7216575--7216627 Score: 52
Period size: 7 Copynumber: 7.1 Consensus size: 7
7216565 AAACACAAAT
7216575 AAATAAA
1 AAATAAA
*
7216582 AACTAAA
1 AAATAAA
*
7216589 AAAAATAA
1 AAATA-AA
7216597 AAATAAA
1 AAATAAA
*
7216604 AACTCAAA
1 AAAT-AAA
7216612 ATAATAAA
1 A-AATAAA
7216620 AAATAAA
1 AAATAAA
7216627 A
1 A
7216628 TGAAAATAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 21 0.57
8 14 0.38
9 2 0.05
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:7216594 original size:16 final size:15
Alignment explanation
Indices: 7216575--7216627 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
7216565 AAACACAAAT
7216575 AAATAAAAACTAAAAA
1 AAATAAAAA-TAAAAA
7216591 AAATAAAAAT--AAA
1 AAATAAAAATAAAAA
* *
7216604 AACTCAAAATAATAAA
1 AAATAAAAATAA-AAA
7216620 AAATAAAA
1 AAATAAAA
7216628 TGAAAATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 11 0.37
15 1 0.03
16 18 0.60
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAAAATAAAAA
Found at i:7216603 original size:22 final size:23
Alignment explanation
Indices: 7216575--7216627 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
7216565 AAACACAAAT
7216575 AAATAAAAACTAAAAAAAAT-AA
1 AAATAAAAACTAAAAAAAATAAA
* *
7216597 AAATAAAAACTCAAAATAATAAA
1 AAATAAAAACTAAAAAAAATAAA
7216620 AAATAAAA
1 AAATAAAA
7216628 TGAAAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (23 bp):
AAATAAAAACTAAAAAAAATAAA
Found at i:7217528 original size:5 final size:5
Alignment explanation
Indices: 7217506--7217619 Score: 74
Period size: 5 Copynumber: 22.2 Consensus size: 5
7217496 AAATAAAAAA
* * * * *
7217506 ATAAT ATACT ACAAT ATAAT ATACT AT-GT -TAAT ATACT ATATAT AATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT -ATAAT
* *
7217556 ATAAC ATAAT AATAAT ATAAT ATAAT ATAAT AATAAT AACAAT AGTAAT
1 ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT -ATAAT -ATAAT A-TAAT
7217605 A-AA- ATAAT ACTAAT A
1 ATAAT ATAAT A-TAAT A
7217620 AAAATAGTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 19
0.73 0.11 0.16
Matches are distributed among these distances:
3 2 0.02
4 6 0.07
5 48 0.56
6 27 0.31
7 3 0.03
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:7217556 original size:3 final size:3
Alignment explanation
Indices: 7217548--7217625 Score: 69
Period size: 3 Copynumber: 28.0 Consensus size: 3
7217538 TATACTATAT
*
7217548 ATA ATA AT- ATA A-C ATA ATA ATA AT- ATA AT- ATA AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
7217591 ATA ACA ATA GTA ATA A-A ATA ATA CTA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7217626 GTTTTATGAC
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
2 11 0.19
3 48 0.81
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7217577 original size:21 final size:21
Alignment explanation
Indices: 7217551--7217593 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7217541 ACTATATATA
7217551 ATAATATAACATAATAATAAT
1 ATAATATAACATAATAATAAT
*
7217572 ATAATATAATATAATAATAAT
1 ATAATATAACATAATAATAAT
7217593 A
1 A
7217594 ACAATAGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAATATAACATAATAATAAT
Done.