Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 40 of 106
Found at i:7441397 original size:15 final size:16
Alignment explanation
Indices: 7441339--7441398 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 16
7441329 ATATGCAACC
7441339 ATTTAATATAATA-TT
1 ATTTAATATAATATTT
*
7441354 ATTT-ATAATTAGTATTT
1 ATTTAAT-A-TAATATTT
7441371 AATTT-ATATAATATTT
1 -ATTTAATATAATATTT
7441387 ATTTAAT-TAATA
1 ATTTAATATAATA
7441399 ATTACAACTA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 2 0.05
15 14 0.37
16 13 0.34
17 3 0.08
18 6 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTAATATAATATTT
Found at i:7441572 original size:25 final size:26
Alignment explanation
Indices: 7441535--7441589 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
7441525 TTTATAAACT
*
7441535 ATATTATATATAATTAATATTT-ATA
1 ATATTATAAATAATTAATATTTAATA
* *
7441560 ATATTGTAAATAATTATTATTTAATA
1 ATATTATAAATAATTAATATTTAATA
7441586 ATAT
1 ATAT
7441590 ATTAATTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
ATATTATAAATAATTAATATTTAATA
Found at i:7441578 original size:55 final size:53
Alignment explanation
Indices: 7441490--7441593 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 53
7441480 AATAATATGG
* *
7441490 AATTATTATCTTATAATATAATGTAAATATATTATTTTATAAACTATATTATATAT
1 AATTAATATCTTATAATAT-ATGTAAATATATTATTTAAT-AA-TATATTATATAT
7441546 AATTAATAT-TTATAATAT-TGTAAATAATTATTATTTAATAATATATTA
1 AATTAATATCTTATAATATATGTAAAT-A-TATTATTTAATAATATATTA
7441594 ATTTCTAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
53 14 0.32
54 3 0.07
55 19 0.43
56 8 0.18
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (53 bp):
AATTAATATCTTATAATATATGTAAATATATTATTTAATAATATATTATATAT
Found at i:7441608 original size:22 final size:21
Alignment explanation
Indices: 7441582--7441636 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
7441572 ATTATTATTT
*
7441582 AATAATATATTAATTTCTAAA
1 AATAATATATTAATTTATAAA
*
7441603 ATATAATA-ATATAATTTATTAA
1 A-ATAATATAT-TAATTTATAAA
7441625 AATAAT-TATTAA
1 AATAATATATTAA
7441637 ATAATATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 10 0.34
22 16 0.55
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAATATATTAATTTATAAA
Found at i:7441647 original size:16 final size:15
Alignment explanation
Indices: 7441606--7441650 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
7441596 TTCTAAAATA
7441606 TAATAATATAATTTAT
1 TAATAATATAA-TTAT
7441622 T-A-AA-ATAATTAT
1 TAATAATATAATTAT
7441634 TAAATAATATAATTAT
1 T-AATAATATAATTAT
7441650 T
1 T
7441651 TAACTTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.20
13 4 0.16
14 3 0.12
15 3 0.12
16 10 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATAATATAATTAT
Found at i:7441716 original size:15 final size:15
Alignment explanation
Indices: 7441698--7441753 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
7441688 GAATGTAATT
7441698 TATATAATAAATATA
1 TATATAATAAATATA
* *
7441713 TATA-AATTAGT-TA
1 TATATAATAAATATA
7441726 TATATAAATAAATAGTA
1 TATAT-AATAAATA-TA
7441743 TATTATAATAA
1 TA-TATAATAA
7441754 TTATTTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 6 0.19
14 5 0.16
15 9 0.28
17 9 0.28
18 3 0.09
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (15 bp):
TATATAATAAATATA
Found at i:7441736 original size:19 final size:17
Alignment explanation
Indices: 7441708--7441750 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
7441698 TATATAATAA
*
7441708 ATATATATAAATTAGTTAT
1 ATATAAATAAA-TAG-TAT
7441727 ATATAAATAAATAGTAT
1 ATATAAATAAATAGTAT
7441744 ATTATAA
1 A-TATAA
7441751 TAATTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 8 0.36
19 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (17 bp):
ATATAAATAAATAGTAT
Found at i:7441752 original size:17 final size:18
Alignment explanation
Indices: 7441708--7441753 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
7441698 TATATAATAA
7441708 ATATAT-ATAAATTAGTT
1 ATATATAATAAATTAGTT
7441725 ATATATAAATAAA-TAG-T
1 ATATAT-AATAAATTAGTT
7441742 ATATTATAATAA
1 ATA-TATAATAA
7441754 TTATTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 15 0.58
18 6 0.23
19 5 0.19
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (18 bp):
ATATATAATAAATTAGTT
Found at i:7441785 original size:21 final size:21
Alignment explanation
Indices: 7441744--7441785 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7441734 TAAATAGTAT
**
7441744 ATTATAATAATTATTTTTATA
1 ATTATAATAATTATTAATATA
7441765 ATTATAATAATT-TATAATATA
1 ATTATAATAATTAT-TAATATA
7441786 TTCATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATAATAATTATTAATATA
Found at i:7441795 original size:18 final size:17
Alignment explanation
Indices: 7441745--7441803 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 17
7441735 AAATAGTATA
7441745 TTATAATA-ATTATT-T
1 TTATAATATATTATTAT
* *
7441760 TTATAAT-TATAATAAT
1 TTATAATATATTATTAT
7441776 TTATAATATATTCATTAT
1 TTATAATATATT-ATTAT
7441794 TTATTAATAT
1 TTA-TAATAT
7441804 CGATATAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 11 0.31
16 8 0.23
17 3 0.09
18 7 0.20
19 6 0.17
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATAATATATTATTAT
Found at i:7441955 original size:12 final size:12
Alignment explanation
Indices: 7441938--7442019 Score: 60
Period size: 12 Copynumber: 6.6 Consensus size: 12
7441928 AATATATCAA
7441938 ATTAATATAATT
1 ATTAATATAATT
7441950 ATTAATATAATT
1 ATTAATATAATT
*
7441962 AATAATGATAA-T
1 ATTAAT-ATAATT
*
7441974 ATT-TTAATAATAT
1 ATTAAT-ATAAT-T
*
7441987 ATTTATATCAATT
1 ATTAATAT-AATT
* *
7442000 AATATTATAATT
1 ATTAATATAATT
7442012 AATTAATA
1 -ATTAATA
7442020 ATTAACAATA
Statistics
Matches: 54, Mismatches: 10, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
11 5 0.09
12 24 0.44
13 21 0.39
14 4 0.07
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (12 bp):
ATTAATATAATT
Found at i:7442002 original size:29 final size:29
Alignment explanation
Indices: 7441930--7442018 Score: 76
Period size: 29 Copynumber: 3.0 Consensus size: 29
7441920 ATTGTTTTAA
* *
7441930 TATATCAAATTAATATAATTATTAATATAAT
1 TATATC-AATTAATAT-TTTAATAATATAAT
*
7441961 TA-AT-AATGATAATATTTTAATAATATATT
1 TATATCAAT--TAATATTTTAATAATATAAT
*
7441990 TATATCAATTAATATTATAATTAAT-TAAT
1 TATATCAATTAATATTTTAA-TAATATAAT
7442019 AATTAACAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
28 3 0.06
29 26 0.54
30 14 0.29
31 5 0.10
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (29 bp):
TATATCAATTAATATTTTAATAATATAAT
Found at i:7442470 original size:24 final size:23
Alignment explanation
Indices: 7442416--7442476 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
7442406 AAATACGTAA
* * *
7442416 TTATGAATTACAATATTAATTAT
1 TTATTAATTATAATATTAATAAT
* *
7442439 ATAATAATTATAATATTTAATAAT
1 TTATTAATTATAATA-TTAATAAT
7442463 TTATTAATTATAAT
1 TTATTAATTATAAT
7442477 TCAAAATTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TTATTAATTATAATATTAATAAT
Found at i:7443010 original size:18 final size:19
Alignment explanation
Indices: 7442965--7443015 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
7442955 CAAATTATAC
*
7442965 TATTTAT-TAATATTAATA
1 TATTTATATAATTTTAATA
*
7442983 TAATTA-ATAATTTTAAT-
1 TATTTATATAATTTTAATA
*
7443000 TATTTATATAAATTTA
1 TATTTATATAATTTTA
7443016 CAATAACAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTATATAATTTTAATA
Found at i:7443287 original size:15 final size:14
Alignment explanation
Indices: 7443267--7443311 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
7443257 TAACTACATA
7443267 ATATTATAATTAAAT
1 ATATTAT-ATTAAAT
7443282 ATATTATATTAAAT
1 ATATTATATTAAAT
*
7443296 ATATAATTATTAAAT
1 ATATTA-TATTAAAT
7443311 A
1 A
7443312 AAAATTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTATATTAAAT
Found at i:7443335 original size:14 final size:14
Alignment explanation
Indices: 7443318--7443362 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7443308 AATAAAAATT
*
7443318 AATTTATAATTATA
1 AATTAATAATTATA
*
7443332 AATTAATAATTTTA
1 AATTAATAATTATA
7443346 TAATTAATTAATTATA
1 -AATTAA-TAATTATA
7443362 A
1 A
7443363 TAAATTAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 12 0.46
15 7 0.27
16 7 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
AATTAATAATTATA
Found at i:7443363 original size:14 final size:14
Alignment explanation
Indices: 7443269--7443369 Score: 50
Period size: 14 Copynumber: 7.0 Consensus size: 14
7443259 ACTACATAAT
*
7443269 ATTATAATTAAATA
1 ATTATAATTAATTA
*
7443283 TATTAT-ATTAAAT-
1 -ATTATAATTAATTA
7443296 A-TATAATT-ATTAA
1 ATTATAATTAATT-A
* *
7443309 ATAAAAATTAATTTATA
1 ATTATAATTAA--T-TA
7443326 ATTATAAATTAA-TA
1 ATTAT-AATTAATTA
7443340 ATTTTATAATTAATTA
1 A--TTATAATTAATTA
*
7443356 ATTATAATAAATTA
1 ATTATAATTAATTA
7443370 GCATTAATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 25
0.69 0.06 0.25
Matches are distributed among these distances:
11 5 0.07
12 4 0.06
13 1 0.01
14 27 0.40
15 12 0.18
16 7 0.10
17 5 0.07
18 7 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTATAATTAATTA
Found at i:7443458 original size:12 final size:12
Alignment explanation
Indices: 7443443--7443494 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
7443433 TAAAATATAT
7443443 TAATAATTATTA
1 TAATAATTATTA
7443455 TAATAATTATT-
1 TAATAATTATTA
7443466 T-ATAAATTAATTA
1 TAAT-AATT-ATTA
7443479 TAATAA-TAGTTA
1 TAATAATTA-TTA
7443491 TAAT
1 TAAT
7443495 TAGTACCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
10 2 0.06
11 6 0.17
12 22 0.63
13 3 0.09
14 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (12 bp):
TAATAATTATTA
Found at i:7443478 original size:24 final size:25
Alignment explanation
Indices: 7443388--7443486 Score: 102
Period size: 24 Copynumber: 4.0 Consensus size: 25
7443378 ATTTTTATTA
*
7443388 ATATTAATAAATATAATTAT-ATAATT
1 ATATTTATAAAT-TAATTATAATAA-T
7443414 ATATTTATCAAA-TAATATATAA-AAT
1 ATATTTAT-AAATTAAT-TATAATAAT
*
7443439 ATATTAAT-AATT-ATTATAATAAT
1 ATATTTATAAATTAATTATAATAAT
7443462 -TATTTATAAATTAATTATAATAAT
1 ATATTTATAAATTAATTATAATAAT
7443486 A
1 A
7443487 GTTATAATTA
Statistics
Matches: 62, Mismatches: 3, Indels: 17
0.76 0.04 0.21
Matches are distributed among these distances:
22 11 0.18
23 11 0.18
24 12 0.19
25 12 0.19
26 12 0.19
27 4 0.06
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATTTATAAATTAATTATAATAAT
Found at i:7443494 original size:45 final size:45
Alignment explanation
Indices: 7443399--7443511 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 45
7443389 TATTAATAAA
*
7443399 TATAATTATATAATTA-TATTTATCAAATAATATATAAAATATAT
1 TATAATTATATAATAATTATTTATCAAATAATATATAAAATATAT
*
7443443 TAATAATTATTATAATAATTATTTAT-AAATTAAT-TATAATAATA-GT
1 T-ATAATTA-TATAATAATTATTTATCAAA-TAATATATAA-AATATAT
**
7443489 TATAATTAGTACCATAATTATTT
1 TATAATTA-TATAATAATTATTT
7443512 GAACTAATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
44 1 0.02
45 26 0.44
46 17 0.29
47 15 0.25
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.47
Consensus pattern (45 bp):
TATAATTATATAATAATTATTTATCAAATAATATATAAAATATAT
Found at i:7443648 original size:18 final size:21
Alignment explanation
Indices: 7443595--7443763 Score: 74
Period size: 22 Copynumber: 8.1 Consensus size: 21
7443585 TTGTTATTGA
*
7443595 AATATTATT-TTTAAATATTAT
1 AATATTATTAATT-AATATTAT
7443616 AATTATTATTAATTAATATTAT
1 AA-TATTATTAATTAATATTAT
7443638 AATA-T-TT-ATT-ATACTTAT
1 AATATTATTAATTAATA-TTAT
*
7443656 AATAATATTAATTAATTAATTA-
1 AATATTATTAATTAA-T-ATTAT
* * *
7443678 ACT-TAAATTAATTATTATTCA-
1 AATAT-TATTAATTAATATT-AT
* * * *
7443699 AAAAATATTAATT-ATCTGAT
1 AATATTATTAATTAATATTAT
7443719 AA-ATTA-TAATTAATATTTATT
1 AATATTATTAATTAATA-TTA-T
*
7443740 AATA-TATTAATATTATATTAT
1 AATATTATTAAT-TAATATTAT
7443761 AAT
1 AAT
7443764 TATAATATAT
Statistics
Matches: 113, Mismatches: 16, Indels: 38
0.68 0.10 0.23
Matches are distributed among these distances:
17 3 0.03
18 16 0.14
19 9 0.08
20 12 0.11
21 26 0.23
22 36 0.32
23 10 0.09
24 1 0.01
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (21 bp):
AATATTATTAATTAATATTAT
Found at i:7443773 original size:27 final size:30
Alignment explanation
Indices: 7443721--7443789 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 30
7443711 TATCTGATAA
*
7443721 ATTATAATTAATATTTATTAATATATTAAT
1 ATTATAATTAATAATTATTAATATATTAAT
7443751 ATTAT-ATT-ATAATTA-TAATATATTAAT
1 ATTATAATTAATAATTATTAATATATTAAT
* *
7443778 ATAATTATTAAT
1 ATTATAATTAAT
7443790 CTGAATAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 16 0.46
28 9 0.26
29 5 0.14
30 5 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
ATTATAATTAATAATTATTAATATATTAAT
Found at i:7443854 original size:18 final size:19
Alignment explanation
Indices: 7443831--7443868 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
7443821 ACTTGAAATA
*
7443831 TATAATTGTTTAAA-TAGT
1 TATAATTATTTAAACTAGT
7443849 TATAATTATTTAAACTAGT
1 TATAATTATTTAAACTAGT
7443868 T
1 T
7443869 CAGTAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (19 bp):
TATAATTATTTAAACTAGT
Found at i:7444062 original size:24 final size:24
Alignment explanation
Indices: 7444035--7444083 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
7444025 ATGAACTAAG
7444035 ATAATTGTAATAAT-TATTA-TTATA
1 ATAATT-T-ATAATATATTATTTATA
7444059 ATAATTTATAATATATTATTTATA
1 ATAATTTATAATATATTATTTATA
7444083 A
1 A
7444084 CACATCCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 6 0.26
24 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATTTATAATATATTATTTATA
Found at i:7444195 original size:26 final size:25
Alignment explanation
Indices: 7444137--7444195 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
7444127 ATTTACTATT
7444137 TTAATATTAAATTAATATAAGATAA
1 TTAATATTAAATTAATATAAGATAA
* *
7444162 CTATATATTAAATTATAATATAA-TTAA
1 TTA-ATATTAAA-T-TAATATAAGATAA
7444189 TTAATAT
1 TTAATAT
7444196 AATTGAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.07
26 12 0.43
27 6 0.21
28 8 0.29
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
TTAATATTAAATTAATATAAGATAA
Found at i:7444339 original size:19 final size:18
Alignment explanation
Indices: 7444311--7444364 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
7444301 TTATTTATTT
*
7444311 TAAATTATTAAAATAATAA
1 TAAATAATTAAAATAA-AA
7444330 TAAATAATTAAAAT-AAA
1 TAAATAATTAAAATAAAA
7444347 TATAATAATTATAAATAA
1 TA-AATAATTA-AAATAA
7444365 CTTAAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 9 0.29
19 17 0.55
20 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATAATTAAAATAAAA
Found at i:7444343 original size:9 final size:9
Alignment explanation
Indices: 7444312--7444370 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
7444302 TATTTATTTT
*
7444312 AAATTATTA
1 AAATAATTA
*
7444321 AAATAATAA
1 AAATAATTA
7444330 TAAATAATTA
1 -AAATAATTA
*
7444340 AAATAAATA
1 AAATAATTA
*
7444349 TAATAATTA
1 AAATAATTA
7444358 TAAATAACTTA
1 -AAATAA-TTA
7444369 AA
1 AA
7444371 TATATAATAG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
9 22 0.55
10 15 0.38
11 3 0.08
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (9 bp):
AAATAATTA
Found at i:7444353 original size:28 final size:31
Alignment explanation
Indices: 7444322--7444416 Score: 88
Period size: 33 Copynumber: 3.0 Consensus size: 31
7444312 AAATTATTAA
7444322 AATAATAATAAATAA-TTAAA-ATA-AATAT
1 AATAATAATAAATAACTTAAATATATAATAT
*
7444350 AATAATTATAAATAACTTAAATATATAATAGTT
1 AATAATAATAAATAACTTAAATATATAATA--T
* * * *
7444383 ATTAATATTATATAAATATATAATATATAATAT
1 AATAATAATAAATAACT-TA-AATATATAATAT
7444416 A
1 A
7444417 TTATATAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
28 14 0.26
29 5 0.09
30 3 0.06
31 4 0.07
33 15 0.28
34 2 0.04
35 11 0.20
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (31 bp):
AATAATAATAAATAACTTAAATATATAATAT
Found at i:7444409 original size:7 final size:7
Alignment explanation
Indices: 7444369--7444467 Score: 57
Period size: 7 Copynumber: 13.9 Consensus size: 7
7444359 AAATAACTTA
7444369 AATATAT
1 AATATAT
7444376 AATAGTTATT
1 AATA--TA-T
7444386 AATAT-T
1 AATATAT
7444392 -ATATA-
1 AATATAT
7444397 AATATAT
1 AATATAT
7444404 AATATAT
1 AATATAT
7444411 AATATAT
1 AATATAT
7444418 --TATAT
1 AATATAT
7444423 AACTATAT
1 AA-TATAT
7444431 AGTATAATAT
1 A--AT-ATAT
*
7444441 ATTAGTAT
1 AATA-TAT
*
7444449 AATTTAT
1 AATATAT
7444456 AA-ATAT
1 AATATAT
*
7444462 GATATA
1 AATATA
7444468 ATTAGATTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 28
0.69 0.05 0.26
Matches are distributed among these distances:
5 9 0.12
6 10 0.14
7 27 0.37
8 13 0.18
9 3 0.04
10 11 0.15
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (7 bp):
AATATAT
Found at i:7444410 original size:20 final size:19
Alignment explanation
Indices: 7444369--7444442 Score: 66
Period size: 20 Copynumber: 4.0 Consensus size: 19
7444359 AAATAACTTA
*
7444369 AATATATAATA-GTTAT-T
1 AATATATAATATATTATAT
*
7444386 AATAT-T-ATATAAATATAT
1 AATATATAATAT-ATTATAT
7444404 AATATATAATATATTATAT
1 AATATATAATATATTATAT
* *
7444423 AACTATATAGTATAATATAT
1 AA-TATATAATATATTATAT
7444443 TAGTATAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
15 3 0.07
16 1 0.02
17 8 0.17
18 6 0.13
19 9 0.20
20 19 0.41
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (19 bp):
AATATATAATATATTATAT
Found at i:7444710 original size:15 final size:15
Alignment explanation
Indices: 7444675--7444718 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
7444665 ATTAAATTTA
* *
7444675 AATTATAATAATTACT
1 AATTATTATAA-TAAT
7444691 AATTATTATAATAAT
1 AATTATTATAATAAT
7444706 AATTATTATAATA
1 AATTATTATAATA
7444719 TTATTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTATTATAATAAT
Found at i:7445079 original size:26 final size:28
Alignment explanation
Indices: 7445019--7445080 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
7445009 TACAAATAAT
7445019 ATATAATATATATTTATATATTTGAATA
1 ATATAATATATATTTATATATTTGAATA
*
7445047 ATATAATAT-TATTT-TACTATTTGATTA
1 ATATAATATATATTTATA-TATTTGAATA
7445074 AT-TAATA
1 ATATAATA
7445081 ATTGTTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 7 0.22
27 16 0.50
28 9 0.28
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
ATATAATATATATTTATATATTTGAATA
Found at i:7445175 original size:18 final size:18
Alignment explanation
Indices: 7445152--7445204 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
7445142 TTAATTTATC
7445152 ATTAATTTTATAATATTA
1 ATTAATTTTATAATATTA
* *
7445170 ATTAATTATAAAATATT-
1 ATTAATTTTATAATATTA
*
7445187 -TTAATACTTATAATATTA
1 ATTAAT-TTTATAATATTA
7445205 TAATTAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 5 0.18
17 8 0.29
18 15 0.54
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTAATTTTATAATATTA
Found at i:7452094 original size:181 final size:181
Alignment explanation
Indices: 7451846--7453248 Score: 1200
Period size: 181 Copynumber: 7.8 Consensus size: 181
7451836 TATCTTATTG
* * * *
7451846 ATTAATTTTT-GAAATATTAATAAATTAATATTATTTTATTACGAATAAGCTAGTATGAT-GAAA
1 ATTAATTTTTAG-AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGATCTAGA
* * * * *
7451909 AACAATTGTTTTATGTCAAAACAAAAGTTCGTAATGATTTGAAATAGATAAATGTTCAAATGGCC
65 AACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTCAAATAGTC
* * ** *
7451974 ATAATTATTTTAACTGATTTGATAAATAGATTTATGTTTTAAATCTTTAACTT
130 ATAACTATTTGAACTGATTCAATAAATAGATTTATTTTTTAAATCTTT-ACTT
* * * * * * *
7452027 ATCAATTTTTAAAATATTAATAAAGTAATATTATTTTATTTGGGACAAGCTTTTATGATCTA-AA
1 ATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGATCTAGAA
* * * * * *
7452091 ACAATTGTTTTATGATAAAATAAAAGGTCATAATGATTTTAGATAGATAATTATTCAAATAGTCA
66 ACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* * *
7452156 TAACTATTTGAACTTG-TTCAATAAATAAATTTATTTTTTAAAATTTTTTGCTT
131 TAACTATTTGAAC-TGATTCAATAAATAGATTTATTTTTT-AAA-TCTTTACTT
* * * * * *
7452209 ATTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTTGAATAGGCATGTATGAAT-T-GA
1 ATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATG-ATCTAGA
* * * * *
7452272 AATAATTATTTTATGACTAAACAAAATGTT-AGAATGATTTGAAATAGATAATTGTTCTAATAGT
65 AACAATTGTTTTATGACAAAACAAAA-GTTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* * * * * *
7452336 CTTAACTATTTGAATTGGA-TCAACAAACACATTTATTTTCTAAATCTTTACTT
129 CATAACTATTTGAACT-GATTCAATAAATAGATTTATTTTTTAAATCTTTACTT
* * ** * * *
7452389 ATTAATTTTTAGAATATTATTAACTTAGCAATATTTTA-CTCTGAATAAGCTTGTATGAAC-AGA
1 ATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTTC-GAATAAGCTTGTATGATCTAGA
* * * * * * * *
7452452 AAAAAATGTTTTAGGACAAAAC-AAAGATCATAACGATTTGAGATAGATAATTGTTTAAATAGTT
65 AACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTCAAATAGTC
** ** * *
7452516 ATAACTATTCAAACT-AGTTCGGTAAAGAGATTTAGTTTTTAAATC--T-CTT
130 ATAACTATTTGAACTGA-TTCAATAAATAGATTTATTTTTTAAATCTTTACTT
* * * * * *
7452565 ATTAATTTTT-GAAATAGTAATAAATTAGTATTATTTTATTAT-AAATGA-TTGTGTATGA-ATA
1 ATTAATTTTTAG-AATATTAATAAATTAATATTATTTTATT-TCGAATAAGCT-TGTATGATCTA
** * ** *
7452626 GAAACAATTGTTTTACAACAAAATAAAA-TGTCATAACAATTTGAAATAGATAATAGTTCAAATA
63 GAAACAATTGTTTTATGACAAAACAAAAGT-TCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * * *
7452690 GAT-ATGACTATTTGAATTGGTTCAATAAACTA-ATTAATTTTTTAAATCTTCAACTT
127 G-TCATAACTATTTGAACTGATTCAATAAA-TAGATTTATTTTTTAAATCTT-TACTT
* * * * * * * *
7452746 ATTAATTTTTAGAATGTTAATATATTAGTATTGTTTTATTCCAAATAAACTTGTATGA-ATAGAA
1 ATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGATCTAGAA
* * * * * *
7452810 ACAATTGTTTTATAACAAAACAAAAGATCATAATAATTTGAAATAAATAATTGTTCAAACAATCA
66 ACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* * * * *
7452875 TAACTATTTGAACTCACTCAGTAAACAAATTTATTTTTTTAAATCTTTTACTT
131 TAACTATTTGAACTGATTCAATAAATAGATTTA-TTTTTTAAATC-TTTACTT
* * * * * *
7452928 ATTAA-TTTTGGAATATTAATTAATTAGA-ATTATTTTATTCCAAATAAGCTTGTTTGAAC-AGA
1 ATTAATTTTTAGAATATTAATAAATTA-ATATTATTTTATTTCGAATAAGCTTGTATGATCTAGA
* *
7452990 AACAATT-TGTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
65 AACAATTGT-TTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* * * *
7453054 CATAATTATTTGAA-TGTGTTCAGA-AAATAGCTTTATTTTCTAAAAT-TTTACTT
129 CATAACTATTTGAACTG-ATTCA-ATAAATAGATTTATTTT-TTAAATCTTTACTT
* * * *
7453107 ATTAATTTTTAGAATATTAATAAATTTATATTATTTTA-TTCAAAATACGCTTGCATGATC-AGA
1 ATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTTC-GAATAAGCTTGTATGATCTAGA
* * * *
7453170 ACCAATTGTTTTATGACAAAA-AAAA-TGTCATAATGTTTTGAAATAGATAATTGTTTAGATAGT
65 AACAATTGTTTTATGACAAAACAAAAGT-TCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* *
7453233 CATTACTATTTCAACT
129 CATAACTATTTGAACT
7453249 TGATCGATAA
Statistics
Matches: 981, Mismatches: 191, Indels: 101
0.77 0.15 0.08
Matches are distributed among these distances:
175 2 0.00
176 65 0.07
177 68 0.07
178 5 0.01
179 127 0.13
180 142 0.14
181 402 0.41
182 160 0.16
183 10 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
ATTAATTTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGATCTAGAA
ACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
TAACTATTTGAACTGATTCAATAAATAGATTTATTTTTTAAATCTTTACTT
Found at i:7452920 original size:538 final size:539
Alignment explanation
Indices: 7451816--7453250 Score: 1280
Period size: 538 Copynumber: 2.7 Consensus size: 539
7451806 ACTGGTCCAG
* * * * * *
7451816 CAAACAAAATTA-TTTATAAATATCTTA-TTGATTAATTTTTGAAATATTAATAAATTA-ATATT
1 CAAACAAATTTATTTTCTAAATCTTTTACTT-ATTAATTTTAG-AATATTAATTAATTAGA-ATT
* * * * ** * * * * *
7451878 ATTTTATTACGAATAAGCTAGTATGATGA-AAAACAAT-TGTTTTATGTCAAAACAAAAGTTCGT
63 ATTTTACTCCAAATAAGCTTGTATGAACAGAAAA-AATGTG-TTTAGGACAAAACAAATGATCAT
* * * * * ** * * *
7451941 AATGATTTGAAATAGATAAATGTTCAAATGGCCATAATTATTTTAACT-GATTTGATAAATAGAT
126 AACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTCAAACTAG-TTCGGTAAAGAGAT
* * * * *
7452005 TTA-TGTTTTAAATCTTTAACTTATCAATTTTTAAAATATTAATAAAGTAATATTATTTTATT-T
190 TTAGT-TTTTAAATC--T--CTTATTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTAT
* * ** * **
7452068 GGGACAA-GCTT-T-TATGATCTA-AAACAATTGTTTTATGATAAAATAAAAGGTCATAATGATT
250 ---A-AATGATTGTGTATGA-ATAGAAACAATTGTTTTACAACAAAATAAAAGGTCATAACAATT
* * *
7452129 TTAGATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAATAAATTTATTTTT
310 TGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAATAAATTAATTTTT
* *** * *** **
7452194 TAAAATTTTTTGCTTATTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTTGAATAGGC
375 TAAAATCTTCAACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAAC
* * * * * * *
7452259 ATGTATGAATTGAAATAATTATTTTATGACTAAACAAAATGTTAGAATGATTTGAAATAGATAAT
440 ATGTATGAATAGAAACAATTATTTTATAACAAAACAAAATGTCAGAATAATTTGAAATAAATAAT
* * * * * *
7452324 TGTTCTAATAGTCTTAACTATTTGAATTGGATCAA
505 TGTTCAAACAATCATAACTATTTGAACTGCATCAA
*
7452359 CAAACACATTTATTTTCTAAATC-TTTACTTATTAATTTTTAGAATATT-ATTAACTTAGCAA-T
1 CAAACAAATTTATTTTCTAAATCTTTTACTTATTAA-TTTTAGAATATTAATTAA-TTAG-AATT
**
7452421 ATTTTACTCTGAATAAGCTTGTATGAACAGAAAAAAATGT-TTTAGGACAAAACAAA-GATCATA
63 ATTTTACTCCAAATAAGCTTGTATGAACAG-AAAAAATGTGTTTAGGACAAAACAAATGATCATA
* * *
7452484 ACGATTTGAGATAGATAATTGTTTAAATAGTTATAACTATTCAAACTAGTTCGGTAAAGAGATTT
127 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTCAAACTAGTTCGGTAAAGAGATTT
7452549 AGTTTTTAAATCTCTTATTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTATAAATGAT
192 AGTTTTTAAATCTCTTATTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTATAAATGAT
*
7452614 TGTGTATGAATAGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAA
257 TGTGTATGAATAGAAACAATTGTTTTACAACAAAATAAAAGGTCATAACAATTTGAAATAGATAA
*
7452679 -TAGTTCAAATAGAT-ATGACTATTTGAA-TTGGTTCAATAAACT-AATTAATTTTTT-AAATCT
322 TTA-TTCAAATAG-TCATAACTATTTGAACTT-GTTCAATAAA-TAAATTAATTTTTTAAAATCT
* * *
7452739 TCAACTTATTAATTTTTAGAATGTTAATATATTAGTATTGTTTTATTCCAAATAAACTTGTATGA
383 TCAACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAACATGTATGA
* *
7452804 ATAGAAACAATTGTTTTATAACAAAACAAAA-GATCATAATAATTTGAAATAAATAATTGTTCAA
448 ATAGAAACAATTATTTTATAACAAAACAAAATG-TCAGAATAATTTGAAATAAATAATTGTTCAA
*
7452868 ACAATCATAACTATTTGAACT-CACTCAG
512 ACAATCATAACTATTTGAACTGCA-TCAA
* * *
7452896 TAAACAAATTTATTTTTTTAAATCTTTTACTTATTAATTTTGGAATATTAATTAATTAGAATTAT
1 CAAACAAATTTA-TTTTCTAAATCTTTTACTTATTAATTTTAGAATATTAATTAATTAGAATTAT
* * * * * * *
7452961 TTTATTCCAAATAAGCTTGTTTGAACAGAAACAATTTGTTTATGACAAAACAAATGGTCATAATG
65 TTTACTCCAAATAAGCTTGTATGAACAGAAAAAATGTGTTTAGGACAAAACAAATGATCATAACG
* ** * * * * *
7453026 ATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAA-TGTGTTCAGAAAATAGCTTTA-
130 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTCAAACT-AGTTCGGTAAAGAGATTTAG
* *
7453089 TTTTCTAAAATTTTACTTATTAATTTTT-AGAATATTAATAAATTTA-TATTATTTTATTCA-AA
194 TTTT-T-AAA-TCT-CTTATTAATTTTTGA-AATAGTAATAAA-TTAGTATTATTTTATT-ATAA
* * * ** * ***
7453151 AT-A-CGCTTGCATG-ATCAGAACCAATTGTTTTATGACAAAA-AAAATGTCATAATGTTTTGAA
252 ATGATTG--TGTATGAAT-AGAAACAATTGTTTTACAACAAAATAAAAGGTCATAACAATTTGAA
* * * * *
7453212 ATAGATAATTGTTTAGATAGTCATTACTATTTCAACTTG
314 ATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG
7453251 ATCGATAAGA
Statistics
Matches: 735, Mismatches: 115, Indels: 86
0.79 0.12 0.09
Matches are distributed among these distances:
535 2 0.00
536 6 0.01
537 156 0.21
538 201 0.27
539 79 0.11
540 6 0.01
541 51 0.07
542 138 0.19
543 71 0.10
544 19 0.03
545 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (539 bp):
CAAACAAATTTATTTTCTAAATCTTTTACTTATTAATTTTAGAATATTAATTAATTAGAATTATT
TTACTCCAAATAAGCTTGTATGAACAGAAAAAATGTGTTTAGGACAAAACAAATGATCATAACGA
TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTCAAACTAGTTCGGTAAAGAGATTTAGTT
TTTAAATCTCTTATTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTATAAATGATTGTG
TATGAATAGAAACAATTGTTTTACAACAAAATAAAAGGTCATAACAATTTGAAATAGATAATTAT
TCAAATAGTCATAACTATTTGAACTTGTTCAATAAATAAATTAATTTTTTAAAATCTTCAACTTA
TTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAACATGTATGAATAGAAAC
AATTATTTTATAACAAAACAAAATGTCAGAATAATTTGAAATAAATAATTGTTCAAACAATCATA
ACTATTTGAACTGCATCAA
Found at i:7453333 original size:92 final size:91
Alignment explanation
Indices: 7453167--7453340 Score: 222
Period size: 92 Copynumber: 1.9 Consensus size: 91
7453157 TTGCATGATC
* ** *** * * *
7453167 AGAACCAATTGTTTTATGACAAAAAAAATGTCATAATGTTTTGAAATAGATAATTGTTTAGATAG
1 AGAAACAATTGTTTTACAACAAAAAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATAG
* *
7453232 TCATTACTATTTCAACTTGATCGATA
66 ACATAACTATTTCAACTTGATCGATA
*
7453258 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
1 AGAAACAATTGTTTTACAACAAAA-AAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATA
*
7453323 GACATAACTATTTGAACT
65 GACATAACTATTTCAACT
7453341 GGTTCAGTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
91 21 0.30
92 48 0.70
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (91 bp):
AGAAACAATTGTTTTACAACAAAAAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATAG
ACATAACTATTTCAACTTGATCGATA
Found at i:7453721 original size:179 final size:176
Alignment explanation
Indices: 7453258--7454436 Score: 946
Period size: 179 Copynumber: 6.6 Consensus size: 176
7453248 TTGATCGATA
** * *
7453258 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAA-TAGTTCAAAT
1 AGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATAATTTGAAATAGATAATTA-TTCAAAT
* * * * * * *
7453322 GGACATAACTATTTGAACTGGTTCAGTAAACTAATTAATTTTTTAAATCTTCAACTTATTAATTT
64 AGTCATAACTATTTGAACTTGTTCAG-AAAATAATTTATTTTTTAAATATT-TACTTATTAA-TT
* * * * *
7453387 TTAGAATGTTAATATATTAGTATTATTTTATTCTAAATAAACTTGTATGAAT
126 TTGGAATATTAATAAATTA-TATTATTTTATTCAAAATAAGCTTGTATGAAT
* * * * * *
7453439 AGAAACAATTATTTTATAACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACA
1 AGAAACAATTGTTTTATGACAAAACAAAAG-TCATAATAATTTGAAATAGATAATTATTCAAATA
* ***
7453504 ATCATAACTATTTGAACTCACTC-GTAAACA-AATTTATTTTTTAAATATTTCACTTATTAATTT
65 GTCATAACTATTTGAACTTGTTCAG-AAA-ATAATTTATTTTTTAAATATTT-ACTTATTAATTT
* * * * *
7453567 TGGAATATTAATTAATTAGAATTATTTTATTCCAAATAAGCTTGTTTGAAC
127 TGGAATATTAATAAATTA-TATTATTTTATTCAAAATAAGCTTGTATGAAT
* * *
7453618 AGAAACAATTGGTTTATGACAAAACAAATGTCATAATGATTTGAAATAGATAATTATTCAAATAG
1 AGAAACAATTGTTTTATGACAAAACAAAAGTCATAATAATTTGAAATAGATAATTATTCAAATAG
* * * *
7453683 TTATAACTATTTGAA-TGTGTTTAGAAAATAGCTTTATTTTCTAAA-ATTATACTTATTAATTTT
66 TCATAACTATTTGAACT-TGTTCAGAAAATA-ATTTATTTTTTAAATATT-TACTTATTAA-TTT
* * **
7453746 TGGAATATTAATAAATTTATATTATTTTATTCAAAATATGCTTGCACAAAT
127 TGGAATATTAATAAA-TTATATTATTTTATTCAAAATAAGCTTGTATGAAT
* ** * * *
7453797 AGAACCAATTGTTTTATGACAAAACAAAATGTCATAATGTTTTGAAATAGATAATTGTTTAGATA
1 AGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATAATTTGAAATAGATAATTATTCAAATA
* * * * * * * *
7453862 GTCGTAACTATTTCAACTTGATTGATAAGAA-AATTCATTTTTT---TAATT-C-TGTTACTCTT
65 GTCATAACTATTTGAACTTG-TTCAGAA-AATAATTTATTTTTTAAATATTTACTTATTAAT-TT
* * * *
7453921 T--AAT-TT-TTAGA--ATATTATTTTATCTC-AAATAGGCTTATATGAAT
127 TGGAATATTAATAAATTATATTATTTTAT-TCAAAATAAGCTTGTATGAAT
* * * * * *
7453965 TGAAGCAATTATTTTATTACAAAACAAAAGCTCACAATAATTTGAAATAGATTATTATTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAG-TCATAATAATTTGAAATAGATAATTATTCAAATA
* * * *
7454030 GTCATGACTATTATGAACTTGTTCGGCAAACAT-ATTTATTTTTTTAAATCTTTTACTTATAAAT
65 GTCATAACTATT-TGAACTTGTTCAG-AAA-ATAATTTA-TTTTTTAAAT-ATTTACTTATTAAT
* ** * *
7454094 TGTTGAAATATTAATAAATTAATATTATTTTATTCTGAATAAGCTAGTATGAAC
125 T-TTGGAATATTAATAAATT-ATATTATTTTATTCAAAATAAGCTTGTATGAAT
* * *
7454148 AAAAACAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTATTCAAATA
1 AGAAACAATTGTTTTATGACAAAAC-AAAAGTCATAATAATTTGAAATAGATAATTATTCAAATA
* * *
7454213 GTCATAACGATTTGAACTTGTTCAGTAAACAGATTTA-TTTTTAAAT-TTTACTTATTAATTGTC
65 GTCATAACTATTTGAACTTGTTCAGAAAATA-ATTTATTTTTTAAATATTTACTTATTAATT-T-
* *
7454276 T-TAAT-TTAATAAATTTGTATTATTTTATTCAAAATAAGCTTGTATGAAT
127 TGGAATATTAATAAA-TTATATTATTTTATTCAAAATAAGCTTGTATGAAT
* ** * * *** ** * **
7454325 AGAAAAAATCATTTTATGACAAAGCAAAAGGTTATAGCGATTTTCAATAAATAATCGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATAATTTGAAATAGATAATTATTCAAATA
* * * * * * *
7454390 ATTATAATTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAAT
65 GTCATAACTATTTGAACTTGTTCAGAAAATA-ATTTATTTTTTAAAT
7454437 CTCTTAATTA
Statistics
Matches: 807, Mismatches: 145, Indels: 95
0.77 0.14 0.09
Matches are distributed among these distances:
167 1 0.00
168 90 0.11
169 16 0.02
170 6 0.01
171 3 0.00
172 2 0.00
173 4 0.00
174 3 0.00
175 9 0.01
176 11 0.01
177 118 0.15
178 96 0.12
179 155 0.19
180 102 0.13
181 79 0.10
182 22 0.03
183 85 0.11
184 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (176 bp):
AGAAACAATTGTTTTATGACAAAACAAAAGTCATAATAATTTGAAATAGATAATTATTCAAATAG
TCATAACTATTTGAACTTGTTCAGAAAATAATTTATTTTTTAAATATTTACTTATTAATTTTGGA
ATATTAATAAATTATATTATTTTATTCAAAATAAGCTTGTATGAAT
Found at i:7454342 original size:177 final size:178
Alignment explanation
Indices: 7453931--7454436 Score: 545
Period size: 177 Copynumber: 2.8 Consensus size: 178
7453921 TAATTTTTAG
* * * ** *
7453931 AATATTATTTTATCTCAAATAGGCTTATATGAATTGAAGCAATTATTTTATTACAAAAC-AAAAG
1 AATATTATTTTAT-TCAAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAAAACAAAAAG
* * * * * * *
7453995 CTCACAATAATTTGAAATAGATTATTATTCAAATAGTCATGACTATTATGAACTTGTTCGGCAAA
65 -TCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATT-TGAACTTGTTCAGTAAA
*
7454060 CATATTTATTTTTTTAAATCTTTTACTTATAAATTGTTGAAATATTAATAAATT
128 CAGATTTA-TTTTTTAAA--TTTTACTTATAAATTGTTGAAATATTAATAAATT
* * * *
7454114 AATATTATTTTATTCTGAATAAGCTAGTATGAACA-AAAACAATTGTTTTATGACAAAACAAAAA
1 AATATTATTTTATTC-AAATAAGCTTGTATGAATAGAAAA-AATTATTTTATGACAAAACAAAAA
*
7454178 GTCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCAGTAAAC
64 GTCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAAC
* *
7454243 AGATTTA-TTTTTAAATTTTACTTATTAATTGTCT-TAAT-TTAATAAATT
129 AGATTTATTTTTTAAATTTTACTTATAAATTGT-TGAAATATTAATAAATT
** * * *
7454291 TGTATTATTTTATTCAAAATAAGCTTGTATGAATAGAAAAAATCATTTTATGACAAAGCAAAAGG
1 AATATTATTTTATTC-AAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAAAACAAAAAG
* * * ** ** * * * *
7454356 TTATAGCGATTTTCAATAAATAATCGTTCAAATAATTATAATTATTTAAACTTGTTCAGTAAACA
65 TCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA
*
7454421 GATTCATTTTTTAAAT
130 GATTTATTTTTTAAAT
7454437 CTCTTAATTA
Statistics
Matches: 273, Mismatches: 44, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
177 118 0.43
178 32 0.12
179 1 0.00
180 8 0.03
182 26 0.10
183 83 0.30
184 5 0.02
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (178 bp):
AATATTATTTTATTCAAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAAAACAAAAAGT
CATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAG
ATTTATTTTTTAAATTTTACTTATAAATTGTTGAAATATTAATAAATT
Found at i:7457127 original size:16 final size:17
Alignment explanation
Indices: 7457106--7457138 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7457096 TAACAATTTG
7457106 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
7457122 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
7457139 TGAACTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:7457219 original size:181 final size:179
Alignment explanation
Indices: 7456646--7457728 Score: 876
Period size: 181 Copynumber: 6.0 Consensus size: 179
7456636 AATCCAACAA
** * * * *
7456646 TTATTAATTTTCAAAATATT-ATAACTTAATATTATTTTATTTCAAATAAGCTTATATGAATTGA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAA--CA
* * * * *
7456710 AATA-ATTTTTTTATGACAGAAGAAAAGGTCATAACAATTTGAAATAGATAACTATTCAAATAGT
64 AAAACATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGT
* * * *
7456774 CATGACTATTTGATCTAGTTCA-GTAAACATATTTAATTTTTTACAAT-TTTTAC
129 CATAACTATTTGAACTAGTT-AGGTAAATA-ATTT-ATTTTTTA-AATCTCTTAC
* ** * * * * * *
7456827 TTATTAATTGTCAAAATATTAATAAATTTGTATTATTTTAATCCGAATAAGCTTGA-ATAAATAG
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTT-ATATGAACAA
** * * * * ** * *
7456891 AAACTATT-ACTTATAATAGAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTT-AAATAG
65 AAAC-ATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATT-ATTCAAATAG
* * * * * *
7456954 AC-TTA--ATTTGAATTAGTTTGATAAATAAATTTATTTTTTAAA-AT-TT--
128 TCATAACTATTTGAACTAGTTAGGTAAAT-AATTTATTTTTTAAATCTCTTAC
* * *
7457000 TTATTAATTTTTGAAATATTAATAGATTAGTATTATTTTATTTCGAACAAACTTATATGAACAAA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAAA
7457065 AACATTAGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTC
66 AACATT-GTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTC
* * *
7457130 ATAATTATTTGAACTAGTTAGGTAAATAGAATTATTTTTTAATTCTCTTAC
130 ATAACTATTTGAACTAGTTAGGTAAATA-ATTTATTTTTTAAATCTCTTAC
* * *
7457181 TTATTAATTTTTGAAATTTTAATAAATTTA-TTTTATTTTA-TTCTAAATAAGC-TAGTATGAAT
1 TTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTC-GAATAAGCTTA-TATGAA-
** * * * ** *
7457243 TGAAAATATTGTTTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCATATA
62 CAAAAACATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATA
** * * *
7457308 GTTTTAACTATTTGAACTAGTTCGGCAAATAATTTTATTTTTTAAATCTCTTAA
127 GTCATAACTATTTGAACTAGTTAGGTAAATAA-TTTATTTTTTAAATCTCTTAC
* * * * *
7457362 TTATTAA-TTTTCAGAATATTATTAGATTAGCTA-TATTTTATTTCAAATAAGCTTGTATGAACA
1 TTATTAATTTTTGA-AATATTAATAAATTAG-TATTATTTTATTTCGAATAAGCTTATATGAACA
** * * * * * * *
7457425 GAAATA-ATTGTTTTATGACAAAATGAAAGGTTATAACAATTTGAAGTATACAACTACTCTAATA
64 -AAA-ACATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATA
* * *** *
7457489 GTCATAACTATTTGAATTAATTTTATAAACAGATTTATTTTTTAAATCTCTTAC
127 GTCATAACTATTTGAACTAGTTAGGTAAATA-ATTTATTTTTTAAATCTCTTAC
* * * *
7457543 TTATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATGATCAAA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAAA
** * * * * * *
7457608 AACAATTGTCATATGACCAAACAAAAGGTAAAAACAATTTGAAATAGATAATTATTGAAATGGCC
66 AAC-ATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTC
* * * * * * * *
7457673 AAAATTATTTAAACT-GATTTGGTAAACATATTCACTTTTTAAATCACTTAC
130 ATAACTATTTGAACTAG-TTAGGTAAATA-ATTTATTTTTTAAATCTCTTAC
7457724 TTATT
1 TTATT
7457729 TGAATTTGTT
Statistics
Matches: 719, Mismatches: 145, Indels: 76
0.76 0.15 0.08
Matches are distributed among these distances:
172 4 0.01
173 56 0.08
174 43 0.06
175 4 0.01
176 4 0.01
177 38 0.05
178 20 0.03
179 4 0.01
180 24 0.03
181 463 0.64
182 58 0.08
183 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAAA
AACATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCA
TAACTATTTGAACTAGTTAGGTAAATAATTTATTTTTTAAATCTCTTAC
Found at i:7457464 original size:362 final size:353
Alignment explanation
Indices: 7456644--7457668 Score: 1088
Period size: 362 Copynumber: 2.9 Consensus size: 353
7456634 ATAATCCAAC
* * **
7456644 AATTATTAATTTTCAAAATATTATA-ACTTAATATTATTTTATTTCAAATAAGCTTATATGAATT
1 AATTATTAATTTTCAGAATATTATAGA-TTAGTATTATTTTATTTCAAATAAGCTTATATGAACA
* *
7456708 GAAATAATTTTTTTATGACAGAAGAAAAGGTCATAACAATTTGAAATAGATAACTATTCAAATAG
65 GAAATAATTGTTTTATGACAAAAG-AAAGGTCATAACAATTTGAAATAGATAACTATTCAAATAG
* * *
7456773 TCATGACTATTTGATCTAGTTCAGTAAACATATTTAATTTTTTACAATT-T-TTACTTATTAATT
129 TCATAACTATTTGAACTAGTT-AGTAAACAGATTT-ATTTTTT--AATTCTCTTACTTATTAATT
* ** * * * * * *
7456836 GTCAAAATATTAATAAATTTGTATTATTTTAATCCGAATAAGCTTGAATAAATAGAAACTATT-A
190 TTTGAAATATTAATAAATTTATATTATTTTATTCCGAATAAGCTTGTATGAATAGAAAATATTGT
* * * * * *
7456900 CTTATAATAGAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTTAAATAGACTTAATTTGA
255 CTTATGATAAAACAAAAGGTAATAATGATTTGAAATAGATAATT-ATTAAATAGACTTAATTTGA
* * *
7456965 ATTAGTTTGATAAATAAATTTATTTTTTAAAATTT
319 ACTAGTTCGACAAATAAATTTATTTTTTAAAATTT
* * * *
7457000 --TTATTAATTTT-TGAAATATTAATAGATTAGTATTATTTTATTTCGAACAAACTTATATGAAC
1 AATTATTAATTTTCAG-AATATT-ATAGATTAGTATTATTTTATTTCAAATAAGCTTATATGAAC
* *
7457062 A-AAA-ACATTAGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAA
64 AGAAATA-ATT-GTTTTATGACAAAA-GAAAGGTCATAACAATTTGAAATAGATAACTATTCAAA
* * *
7457125 TAGTCATAATTATTTGAACTAGTTAGGTAAATAGAATTATTTTTTAATTCTCTTACTTATTAATT
126 TAGTCATAACTATTTGAACTAGTTA-GTAAACAGATTTATTTTTTAATTCTCTTACTTATTAATT
* * ** * *
7457190 TTTGAAATTTTAATAAATTTATTTTATTTTATTCTAAATAAGCTAGTATGAATTGAAAATATTGT
190 TTTGAAATATTAATAAATTTATATTATTTTATTCCGAATAAGCTTGTATGAATAGAAAATATTGT
* * * **
7457255 TTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATT
255 CTTATGATAAAACAAAAGGTAATAATGATTTGAAATAGATAATTATT-AAATAGACTT-A--ATT
* * *
7457320 TGAACTAGTTCGGCAAATAATTTTATTTTTTAAATCTCTT
316 TGAACTAGTTCGACAAATAAATTTATTTTTTAAA-AT-TT
*
7457360 AATTATTAATTTTCAGAATATTATTAGATTAGCTA-TATTTTATTTCAAATAAGCTTGTATGAAC
1 AATTATTAATTTTCAGAATATTA-TAGATTAG-TATTATTTTATTTCAAATAAGCTTATATGAAC
* * * * * *
7457424 AGAAATAATTGTTTTATGACAAAATGAAAGGTTATAACAATTTGAAGTATACAACTACTCTAATA
64 AGAAATAATTGTTTTATGACAAAA-GAAAGGTCATAACAATTTGAAATAGATAACTATTCAAATA
* * *
7457489 GTCATAACTATTTGAATTAATTTTA-TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTT
128 GTCATAACTATTTGAACT-A-GTTAGTAAACAGATTTATTTTTTAATTCTCTTACTTATTAATTT
* *
7457553 TTGAAAGATTAATAAA-TTAGTATTATTTTATTCCGAATAAGCTTGTATG-ATCA-AAAACAATT
191 TTGAAATATTAATAAATTTA-TATTATTTTATTCCGAATAAGCTTGTATGAAT-AGAAAA-TATT
* ** * **
7457615 GTCATATGACCAAACAAAAGGTAAAAACAATTTGAAATAGATAATTATTGAAAT
253 GTCTTATGATAAAACAAAAGGTAATAATGATTTGAAATAGATAATTATT-AAAT
7457669 GGCCAAAATT
Statistics
Matches: 554, Mismatches: 87, Indels: 50
0.80 0.13 0.07
Matches are distributed among these distances:
352 4 0.01
353 2 0.00
354 95 0.17
355 157 0.28
356 2 0.00
358 32 0.06
359 1 0.00
360 2 0.00
361 10 0.02
362 235 0.42
363 10 0.02
364 4 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (353 bp):
AATTATTAATTTTCAGAATATTATAGATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAG
AAATAATTGTTTTATGACAAAAGAAAGGTCATAACAATTTGAAATAGATAACTATTCAAATAGTC
ATAACTATTTGAACTAGTTAGTAAACAGATTTATTTTTTAATTCTCTTACTTATTAATTTTTGAA
ATATTAATAAATTTATATTATTTTATTCCGAATAAGCTTGTATGAATAGAAAATATTGTCTTATG
ATAAAACAAAAGGTAATAATGATTTGAAATAGATAATTATTAAATAGACTTAATTTGAACTAGTT
CGACAAATAAATTTATTTTTTAAAATTT
Found at i:7457929 original size:229 final size:228
Alignment explanation
Indices: 7457514--7457957 Score: 557
Period size: 229 Copynumber: 1.9 Consensus size: 228
7457504 ATTAATTTTA
* * *
7457514 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATAAATTAGTATTAT
1 TAAACAGATTTATTTTTTAAATCTCTTACATATTAATTTTTCAAAGATTAATAAATTAGTATTAA
* *
7457579 TTTATTCCGAATAAGCTTGTATGATCAAAAACAATTGTCATATGACCAAACAAAAGGTAAAAACA
66 TTTATTCCGAATAAGCTTGTATGAACAAAAACAATTGTCATATGACCAAACAAAAGATAAAAACA
* * ** ** * * *
7457644 ATTTGAAATAGATAATTATTGAAATGGCCAAAATTATTTAAACTGATTTGGTAAACATATTCACT
131 ATATGAAATAGATAATTATTCAAATAACCAAAACCATTTAAACTAATTTAGTAAACAAATTCACT
7457709 TTTTAAATCACTTACTTATTTGAATTTGTTCAG
196 TTTTAAATCACTTACTTATTTGAATTTGTTCAG
*
7457742 TAAACAGATTTATTTTTTTAAATCTCTTTCATATTAATTTTTCAAATG-TTAATAAATTAGTATT
1 TAAACAGATTTA-TTTTTTAAATCTCTTACATATTAATTTTTCAAA-GATTAATAAATTAGTATT
* ** * ** * *
7457806 AATTTATTCTGAATAAGCTTGTATGAACTGAAATAATTGTTTTATGACTAAACAAAAGATCAAAA
64 AATTTATTCCGAATAAGCTTGTATGAACAAAAACAATTGTCATATGACCAAACAAAAGATAAAAA
** * **** * *
7457871 TGATATGAAATAGATAATTATTCTAATAATTTTAACCATTTGAACTAATTTAGTAAACAAATTTA
129 CAATATGAAATAGATAATTATTCAAATAACCAAAACCATTTAAACTAATTTAGTAAACAAATTCA
* *
7457936 TTTTTTAAATCTCTTACTTATT
194 CTTTTTAAATCACTTACTTATT
7457958 AATTTTCAAA
Statistics
Matches: 180, Mismatches: 34, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
228 12 0.07
229 167 0.93
230 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (228 bp):
TAAACAGATTTATTTTTTAAATCTCTTACATATTAATTTTTCAAAGATTAATAAATTAGTATTAA
TTTATTCCGAATAAGCTTGTATGAACAAAAACAATTGTCATATGACCAAACAAAAGATAAAAACA
ATATGAAATAGATAATTATTCAAATAACCAAAACCATTTAAACTAATTTAGTAAACAAATTCACT
TTTTAAATCACTTACTTATTTGAATTTGTTCAG
Found at i:7458117 original size:180 final size:181
Alignment explanation
Indices: 7457740--7458182 Score: 493
Period size: 180 Copynumber: 2.4 Consensus size: 181
7457730 GAATTTGTTC
* * * * *
7457740 AGTAAACAGATTTATTTTTTTAAATCTCTTTCATATTAATTTTTCAAATGTTAATAAATTAGTAT
1 AGTAAACAGATTTA-TTTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTAT
* * ** * * *
7457805 TAATTTATTCTGAATAAGCTTGTATGAACTGAAATAATTGTTTTATGACTAAACAAAAGATCAAA
65 TATTTTATTCTAAATAAGCTTGTACAAACTAAAACAATTGTTTTATCACTAAACAAAAGATCAAA
** * *
7457870 ATGATATGAAATAGATAATTATTCTAATAATTTTAACCATTTGAACTAATTT
130 ACAATATGAAATAGATAATCATTCTAATAATTTTAACCATTTGAACTAAGTT
*
7457922 AGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAA-TTTTCAAAATATTATTAAATTAGTAT
1 AGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTC-AAATATTATTAAATTAGTAT
* * * * * *
7457986 TATTTTAATCCAAATAAGCTTGTACAAAC-AAAACAATTGTTTTA-CATTAAAAGAAAAGGTCAT
65 TATTTTATTCTAAATAAGCTTGTACAAACTAAAACAATTGTTTTATCACT-AAACAAAAGATCAA
* * *
7458049 AACAATTTGAAATAGATAATCATTCATAA-AGTTTTAACTATTTGAACT-AGTT
129 AACAATATGAAATAGATAATCATTC-TAATAATTTTAACCATTTGAACTAAGTT
* * * * ** *
7458101 CG-ACAATTAGATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTGAAATATTATTAAATTAGTA
1 AGTA-AA-CAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTA
7458165 TTATTTTATTCTAAATAA
64 TTATTTTATTCTAAATAA
7458183 AATAGTATGA
Statistics
Matches: 220, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
178 1 0.00
179 8 0.04
180 128 0.58
181 70 0.32
182 13 0.06
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.43
Consensus pattern (181 bp):
AGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATT
ATTTTATTCTAAATAAGCTTGTACAAACTAAAACAATTGTTTTATCACTAAACAAAAGATCAAAA
CAATATGAAATAGATAATCATTCTAATAATTTTAACCATTTGAACTAAGTT
Found at i:7459090 original size:12 final size:13
Alignment explanation
Indices: 7459073--7459105 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
7459063 TTATTTAATA
7459073 ATATTATAA-AAT
1 ATATTATAACAAT
7459085 ATATTATAACAAT
1 ATATTATAACAAT
7459098 AGTATTAT
1 A-TATTAT
7459106 CAATTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
13 4 0.21
14 6 0.32
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (13 bp):
ATATTATAACAAT
Found at i:7459135 original size:25 final size:23
Alignment explanation
Indices: 7459107--7459163 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 23
7459097 TAGTATTATC
7459107 AATTTAATAT-AAGATTATATTAATT
1 AATTTAATATCAAG-TTAT-TTAA-T
7459132 AATTTAATATCAAGTTATTTAAT
1 AATTTAATATCAAGTTATTTAAT
7459155 AA-TTAATAT
1 AATTTAATAT
7459164 TAATACTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.23
23 3 0.10
24 4 0.13
25 14 0.45
26 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (23 bp):
AATTTAATATCAAGTTATTTAAT
Found at i:7459189 original size:29 final size:28
Alignment explanation
Indices: 7459110--7459192 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 28
7459100 TATTATCAAT
7459110 TTAATAT-AAGATTATA-TTA-ATTAAT-
1 TTAATATCAA-ATTATATTTATATTAATA
* *
7459135 TTAATATCAAGTTAT-TTAATAATTAATA
1 TTAATATCAAATTATATTTAT-ATTAATA
*
7459163 TTAATACTTAAATTATATTTATATTAATA
1 TTAATA-TCAAATTATATTTATATTAATA
7459192 T
1 T
7459193 AATTTTAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
25 13 0.28
26 2 0.04
27 6 0.13
28 6 0.13
29 15 0.33
30 4 0.09
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (28 bp):
TTAATATCAAATTATATTTATATTAATA
Found at i:7459372 original size:33 final size:33
Alignment explanation
Indices: 7459291--7459372 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
7459281 ATATAAGTAT
*
7459291 TAATATATTAAT-ATTATTTGCTTATAAATTTA
1 TAATATATTAATAATAATTTGCTTATAAATTTA
* *
7459323 TAATTATAATATTAATAATTTG-TTA-ATAATTTA
1 TAA-TATATTAATAATAATTTGCTTATA-AATTTA
7459356 TAATACTATTAATAATA
1 TAATA-TATTAATAATA
7459373 TATTATAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
32 6 0.15
33 28 0.68
34 7 0.17
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (33 bp):
TAATATATTAATAATAATTTGCTTATAAATTTA
Found at i:7459411 original size:19 final size:19
Alignment explanation
Indices: 7459346--7459416 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 19
7459336 AATAATTTGT
* *
7459346 TAATAATT-TATAATACTA
1 TAATAATTATATTATAATA
7459364 TTAATAA-TATATTAT-A-A
1 -TAATAATTATATTATAATA
*
7459381 -AA-AATAATATTATAATA
1 TAATAATTATATTATAATA
*
7459398 TAATAATTATATTAAAATA
1 TAATAATTATATTATAATA
7459417 ATTTAAAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
14 2 0.05
15 9 0.22
16 1 0.02
17 2 0.05
18 3 0.07
19 24 0.59
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATAATTATATTATAATA
Found at i:7459556 original size:17 final size:17
Alignment explanation
Indices: 7459522--7459575 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
7459512 TTTATTTAGC
* *
7459522 ATAAATATTAATATATT
1 ATAAATATTATTAAATT
7459539 ATAAATATTATTAAATT
1 ATAAATATTATTAAATT
*
7459556 AATTAAA-AATATTAAATT
1 -A-TAAATATTATTAAATT
7459574 AT
1 AT
7459576 TTTTAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 1 0.03
17 16 0.50
18 11 0.34
19 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAAATATTATTAAATT
Found at i:7459783 original size:21 final size:21
Alignment explanation
Indices: 7459733--7459784 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
7459723 ATAATATTTT
*
7459733 TAATTAA-ATT-TTTTAATAA
1 TAATTAATATTATGTTAATAA
*
7459752 TGA-TAATTATTATGTTAATAA
1 TAATTAA-TATTATGTTAATAA
7459773 TAATTAATATTA
1 TAATTAATATTA
7459785 ATATAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 3 0.12
19 2 0.08
20 3 0.12
21 15 0.58
22 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TAATTAATATTATGTTAATAA
Found at i:7459796 original size:13 final size:15
Alignment explanation
Indices: 7459754--7459799 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7459744 TTTAATAATG
* *
7459754 ATAATTATTATGTTA
1 ATAATAATTATATTA
7459769 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
7459785 AT-ATAATT-TATTA
1 ATAATAATTATATTA
7459798 AT
1 AT
7459800 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:7459926 original size:23 final size:23
Alignment explanation
Indices: 7459884--7459935 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
7459874 GAAATCTAAG
7459884 ATAATT-AATAATATTAATT-AT
1 ATAATTAAATAATATTAATTAAT
7459905 AATAATTAAATAA-ATTATATTAAT
1 -ATAATTAAATAATATTA-ATTAAT
7459929 ATAATTA
1 ATAATTA
7459936 TTTATTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 15 0.56
24 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAATTAAATAATATTAATTAAT
Found at i:7460151 original size:20 final size:20
Alignment explanation
Indices: 7460128--7460214 Score: 56
Period size: 20 Copynumber: 4.3 Consensus size: 20
7460118 AATTATAAAT
7460128 TTATATTAATAGTTTAATAA
1 TTATATTAATAGTTTAATAA
*
7460148 TTATAACTTTA-AGTTTAA-ATA
1 TTAT-A-TTAATAGTTTAATA-A
* * *
7460169 TCATATATAATA-TTTTATTA
1 TTATAT-TAATAGTTTAATAA
*
7460189 TTATA-TAATAATATTAATAA
1 TTATATTAATAGT-TTAATAA
7460209 TTATAT
1 TTATAT
7460215 AAATTGATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 17
0.67 0.11 0.23
Matches are distributed among these distances:
18 5 0.10
19 2 0.04
20 27 0.54
21 13 0.26
22 3 0.06
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TTATATTAATAGTTTAATAA
Found at i:7460300 original size:40 final size:39
Alignment explanation
Indices: 7460256--7460333 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
7460246 TTAATTTAAA
7460256 ATATACTAATTAAATAAATAAAT-TAATTGGTTATTATTAT
1 ATATA-TAATTAAAT-AATAAATATAATTGGTTATTATTAT
* * *
7460296 ATATATCATTAAATAGTAAGTGATAATTGGTTATTATT
1 ATATATAATTAAATAATAAAT-ATAATTGGTTATTATT
7460334 CATAACAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 5 0.15
39 8 0.24
40 20 0.61
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.45
Consensus pattern (39 bp):
ATATATAATTAAATAATAAATATAATTGGTTATTATTAT
Found at i:7461031 original size:16 final size:14
Alignment explanation
Indices: 7460968--7461043 Score: 53
Period size: 16 Copynumber: 4.9 Consensus size: 14
7460958 TTATAACTAA
7460968 TAAAATGAATTACTAT
1 TAAAAT-AATTA-TAT
*
7460984 TATAAATAATAATAT
1 TA-AAATAATTATAT
*
7460999 TAAATATAGTTAATAT
1 TAAA-ATAATT-ATAT
7461015 TAAAATAATATAGTATT
1 TAAAATAAT-TA-TA-T
*
7461032 TAATATAATTAT
1 TAAAATAATTAT
7461044 TAAAGATTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
14 2 0.04
15 15 0.31
16 19 0.39
17 13 0.27
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (14 bp):
TAAAATAATTATAT
Found at i:7461152 original size:19 final size:20
Alignment explanation
Indices: 7461128--7461167 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
7461118 TTGATATATA
*
7461128 ATACTTTATT-ATAATTATT
1 ATACTTTATTAATAATAATT
7461147 ATACTTTATTAATAATAATT
1 ATACTTTATTAATAATAATT
7461167 A
1 A
7461168 ATATTAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
ATACTTTATTAATAATAATT
Found at i:7461867 original size:179 final size:183
Alignment explanation
Indices: 7461389--7461894 Score: 558
Period size: 181 Copynumber: 2.8 Consensus size: 183
7461379 TAATCTCCTA
* * *
7461389 CTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTTA-TTCTAATTAGGCTTGTATGATGA
1 CTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAA-TAAGCTTGTATGA--A
* * * * *
7461453 A-AGACAATTGTTTTATGACAAAATAAAA-GTTCAAAATGATTTGAAATAGATAATTGTTCAAAT
63 ATAAACAATTGTTTTATGACTAAACAAAATG-TCAAAATGATTTAAAATAGATAATTGTTTAAAT
* * *
7461516 GGCCATAACTATTTGAAC-TGATTTGATAAAATGATTTATGTTTTAAATCTCCAATTT
127 AGTCATAACTATTTGAACTTGATTTGATAAAATGATTTATGTTTTAAATCTCC-ATTG
* * * * *
7461573 CTTA--AA-TTTTGAAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAAATG
1 CTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAATAAGCTTGTATGAAAT-
*
7461635 AAACAATTGTTTTATGA-TAAAACAAAATGTCATAATGATTGTAAAAT-GATAATTGTTTAAATA
65 AAACAATTGTTTTATGACT-AAACAAAATGTCAAAATGATT-TAAAATAGATAATTGTTTAAATA
* * *
7461698 GTCATAACTATTTAAACTTG-TTTGGTAAACA-GATTTAT-TTTTTAAT-TCC-TTG
128 GTCATAACTATTTGAACTTGATTTGATAAA-ATGATTTATGTTTTAAATCTCCATTG
* * *
7461750 CTTATTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATTTCGAATAAGCATGTATGAACT
1 CTTATTAA-TTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAATAAGCTTGTATGAAAT
* * *
7461814 AAACAATTATTTTATGACTAAACAAAATGTCAGAATGATTTAAAATAGATAATT-ATTATAATAG
65 AAACAATTGTTTTATGACTAAACAAAATGTCAAAATGATTTAAAATAGATAATTGTTTA-AATAG
*
7461878 TCTTAACTATTTGAACT
129 TCATAACTATTTGAACT
7461895 GGTTCAACAA
Statistics
Matches: 275, Mismatches: 32, Indels: 35
0.80 0.09 0.10
Matches are distributed among these distances:
177 6 0.02
178 9 0.03
179 70 0.25
180 49 0.18
181 123 0.45
182 14 0.05
184 4 0.01
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (183 bp):
CTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAATAAGCTTGTATGAAATA
AACAATTGTTTTATGACTAAACAAAATGTCAAAATGATTTAAAATAGATAATTGTTTAAATAGTC
ATAACTATTTGAACTTGATTTGATAAAATGATTTATGTTTTAAATCTCCATTG
Found at i:7461915 original size:179 final size:177
Alignment explanation
Indices: 7461379--7462016 Score: 537
Period size: 181 Copynumber: 3.6 Consensus size: 177
7461369 AATAAACAAA
* * * *
7461379 TAATCTCCTACTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTTA-TTCTAATTAGGCT
1 TAAT-TCCTTCTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAA-TAAGCT
* * * *
7461443 TGTATGATGAA-AGACAATTGTTTTATGACAAAATAAAA-GTTCAAAATGATTTGAAATAGATAA
64 TGTATGA--AATAAACAATTGTTTTATGACTAAACAAAATG-TCAAAATGATTTAAAATAGATAA
* * * *
7461506 TTGTTCA-AATGGCCATAACTATTTGAACTGATTTGATAAAAT-GATTTATGTTTT
126 TTGTT-ATAATAGTCATAACTATTTGAACTG-GTTCA-AAAATAGATTTAT-TTTT
* * * * * * * *
7461560 AAATCTCCAAT-TTCTTAAATTTTGAAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCT
1 TAAT-TCC-TTCTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAATAAGCT
* *
7461624 TTTATGAAATGAAACAATTGTTTTATGA-TAAAACAAAATGTCATAATGATTGTAAAAT-GATAA
64 TGTATGAAAT-AAACAATTGTTTTATGACT-AAACAAAATGTCAAAATGATT-TAAAATAGATAA
* * *** *
7461687 TTGTT-TAAATAGTCATAACTATTTAAACTTGTTTGGTAAACAGATTTATTTTT
126 TTGTTAT-AATAGTCATAACTATTTGAAC-TGGTTCAAAAATAGATTTATTTTT
* *
7461740 TAATTCCTTGCTTATTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATTTCGAATAAGCA
1 TAATTCCTT-CTTATTAA-TTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAATAAGCT
* * * *
7461804 TGTATGAACTAAACAATTATTTTATGACTAAACAAAATGTCAGAATGATTTAAAATAGATAATTA
64 TGTATGAAATAAACAATTGTTTTATGACTAAACAAAATGTCAAAATGATTTAAAATAGATAATTG
* *
7461869 TTATAATAGTCTTAACTATTTGAACTGGTTCAACAAATACATTTATTTTT
129 TTATAATAGTCATAACTATTTGAACTGGTTCAA-AAATAGATTTATTTTT
* * * *** * * * * * *
7461919 TAAAT-C-TCTTATTAATTTTT-AGAGTATTATTAGTTTAGCAATATTTTACTCCAAATAAGTTT
1 TAATTCCTTCTTATTAATTTTTGA-AATATTAATAAAATAGTATTATTTTATTTCGAATAAGCTT
* * *
7461981 GTATGGATAGAAACAATTGTTTTATGACAAAACAAA
65 GTAT-GAAATAAACAATTGTTTTATGACTAAACAAA
7462017 GATCATATCA
Statistics
Matches: 371, Mismatches: 65, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
175 5 0.01
176 39 0.11
177 27 0.07
178 12 0.03
179 87 0.23
180 59 0.16
181 131 0.35
182 11 0.03
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (177 bp):
TAATTCCTTCTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCGAATAAGCTTG
TATGAAATAAACAATTGTTTTATGACTAAACAAAATGTCAAAATGATTTAAAATAGATAATTGTT
ATAATAGTCATAACTATTTGAACTGGTTCAAAAATAGATTTATTTTT
Found at i:7462523 original size:16 final size:16
Alignment explanation
Indices: 7462504--7462567 Score: 78
Period size: 16 Copynumber: 4.0 Consensus size: 16
7462494 AAATTATTTT
7462504 AATATTTAA-AATATTA
1 AATATTTAATAATA-TA
*
7462520 AATATCTTATTAATAT-
1 AATAT-TTAATAATATA
7462536 AATATTTAATAATATA
1 AATATTTAATAATATA
*
7462552 AATAGTTAATAATATA
1 AATATTTAATAATATA
7462568 TTAAATTTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.21
16 25 0.60
17 4 0.10
18 4 0.10
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
AATATTTAATAATATA
Found at i:7462985 original size:26 final size:25
Alignment explanation
Indices: 7462938--7462986 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
7462928 TATATAACAA
7462938 ATTTTAATATTAATTATAATTATCT
1 ATTTTAATATTAATTATAATTATCT
*
7462963 ATTTTATTATATAATT-TATATTAT
1 ATTTTAATAT-TAATTATA-ATTAT
7462987 TAATTCCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTAATATTAATTATAATTATCT
Found at i:7464196 original size:20 final size:20
Alignment explanation
Indices: 7464158--7464197 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7464148 ATCAATAATT
*
7464158 AATATTATTTAATACTATAA
1 AATATGATTTAATACTATAA
7464178 AATATGATTATAATA-TATAA
1 AATATGATT-TAATACTATAA
7464198 TAAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (20 bp):
AATATGATTTAATACTATAA
Found at i:7464888 original size:10 final size:9
Alignment explanation
Indices: 7464869--7464911 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
7464859 AATAAACTAT
7464869 ATTATGTATA
1 ATTAT-TATA
7464879 ATTATATATA
1 ATTAT-TATA
7464889 ATTATTATA
1 ATTATTATA
*
7464898 ATTGTTAATA
1 ATTATT-ATA
7464908 ATTA
1 ATTA
7464912 ATGATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 9 0.31
10 20 0.69
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (9 bp):
ATTATTATA
Found at i:7465439 original size:9 final size:9
Alignment explanation
Indices: 7465384--7465488 Score: 61
Period size: 9 Copynumber: 11.2 Consensus size: 9
7465374 AGTATAATAT
*
7465384 ATTATTATT
1 ATTATTATA
7465393 ATTATTATTA
1 ATTATTA-TA
* *
7465403 ATTGGTTATGG
1 ATT-ATTAT-A
7465414 ATTATTA-A
1 ATTATTATA
**
7465422 ACCATTATA
1 ATTATTATA
7465431 ATTATTATA
1 ATTATTATA
7465440 TTATATATTATA
1 --AT-TATTATA
*
7465452 TTTATTATA
1 ATTATTATA
*
7465461 AAT-TTATA
1 ATTATTATA
*
7465469 TTTATTATA
1 ATTATTATA
*
7465478 TTTATTATA
1 ATTATTATA
7465487 AT
1 AT
7465489 AAAATTATAA
Statistics
Matches: 73, Mismatches: 15, Indels: 16
0.70 0.14 0.15
Matches are distributed among these distances:
8 11 0.15
9 38 0.52
10 9 0.12
11 8 0.11
12 7 0.10
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (9 bp):
ATTATTATA
Found at i:7465453 original size:17 final size:16
Alignment explanation
Indices: 7465425--7465482 Score: 68
Period size: 17 Copynumber: 3.8 Consensus size: 16
7465415 TTATTAAACC
*
7465425 ATTATA-ATTAT-TAT
1 ATTATATATTATATTT
7465439 ATTATATATTATATTT
1 ATTATATATTATATTT
*
7465455 ATTATAAATTTATATTT
1 ATTATATA-TTATATTT
7465472 ATTATAT-TTAT
1 ATTATATATTAT
7465483 TATAATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 6 0.16
15 9 0.24
16 9 0.24
17 14 0.37
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATATATTATATTT
Found at i:7465490 original size:29 final size:29
Alignment explanation
Indices: 7465434--7465497 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
7465424 CATTATAATT
*
7465434 ATTATATTATATATTATATTTATTATAAA
1 ATTATATTATATATTATATTTATAATAAA
*
7465463 TTTATATTTATTATATT-TA-TTATAATAAA
1 ATTATA-TTA-TATATTATATTTATAATAAA
7465492 ATTATA
1 ATTATA
7465498 AAATTATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 19 0.63
30 5 0.17
31 6 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
ATTATATTATATATTATATTTATAATAAA
Found at i:7465511 original size:26 final size:27
Alignment explanation
Indices: 7465441--7465514 Score: 71
Period size: 26 Copynumber: 2.7 Consensus size: 27
7465431 ATTATTATAT
* * *
7465441 TATATATTATA-TTTATTATAAATTTA
1 TATAAATTATATTTTATAATAAAATTA
**
7465467 TATTTATTATATTTATTATAATAAAATTA
1 TATAAATTATA-TT-TTATAATAAAATTA
7465496 TA-AAATTATATTTTATAAT
1 TATAAATTATATTTTATAAT
7465515 CTATTTTGGA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 17 0.43
27 2 0.05
28 7 0.17
29 14 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TATAAATTATATTTTATAATAAAATTA
Found at i:7465620 original size:15 final size:15
Alignment explanation
Indices: 7465585--7465624 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7465575 ATTATGGTTC
*
7465585 AATTATTAAT-TATA
1 AATTATTAATAGATA
7465599 AATTATTAATAGATA
1 AATTATTAATAGATA
*
7465614 CATTATTAATA
1 AATTATTAATA
7465625 ATTTATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (15 bp):
AATTATTAATAGATA
Found at i:7465684 original size:21 final size:20
Alignment explanation
Indices: 7465646--7465686 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
7465636 TTTTAAATAT
*
7465646 TATTAAATTATAATTTATAA
1 TATTAAATTATAAATTATAA
7465666 TATTAAATTGATAAATTATAA
1 TATTAAATT-ATAAATTATAA
7465687 AAATATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
TATTAAATTATAAATTATAA
Found at i:7465818 original size:23 final size:23
Alignment explanation
Indices: 7465772--7465825 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
7465762 ACTATATTAA
* * **
7465772 TAAATTATTTTAGTTTATGTATT
1 TAAATTATTATAATTTATCAATT
7465795 TAAATTATTATAATTTATCAATT
1 TAAATTATTATAATTTATCAATT
7465818 TAATATTA
1 TAA-ATTA
7465826 AAAAATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (23 bp):
TAAATTATTATAATTTATCAATT
Found at i:7465843 original size:34 final size:34
Alignment explanation
Indices: 7465795--7465875 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 34
7465785 TTTATGTATT
7465795 TAAATT-ATTATAATTT-ATCAATTTAATATTAAA
1 TAAATTAATTATAATTTAAT-AATTTAATATTAAA
*
7465828 -AAATATAATTATAATTTAATAATTTATTATTAAA
1 TAAAT-TAATTATAATTTAATAATTTAATATTAAA
*
7465862 TTAATTAATTATAA
1 TAAATTAATTATAA
7465876 AATTAGTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
32 4 0.10
33 1 0.02
34 32 0.76
35 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (34 bp):
TAAATTAATTATAATTTAATAATTTAATATTAAA
Found at i:7465866 original size:16 final size:16
Alignment explanation
Indices: 7465847--7465880 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7465837 TATAATTTAA
* *
7465847 TAATTTATTATTAAAT
1 TAATTAATTATAAAAT
7465863 TAATTAATTATAAAAT
1 TAATTAATTATAAAAT
7465879 TA
1 TA
7465881 GTATATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTAATTATAAAAT
Found at i:7466109 original size:14 final size:14
Alignment explanation
Indices: 7466092--7466178 Score: 60
Period size: 14 Copynumber: 6.6 Consensus size: 14
7466082 TTTATAATCT
7466092 TTAATTAATTATAA
1 TTAATTAATTATAA
7466106 TTAATT-ATT-TAA
1 TTAATTAATTATAA
** *
7466118 TTGTTTAATTTTAA
1 TTAATTAATTATAA
* *
7466132 TAAATT-ATTCT-A
1 TTAATTAATTATAA
* *
7466144 -TAAATAATATATGA
1 TTAATTAAT-TATAA
7466158 -TAATTAATTATAA
1 TTAATTAATTATAA
7466171 TTAATTAA
1 TTAATTAA
7466179 AGATTATAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
11 3 0.05
12 10 0.18
13 16 0.29
14 27 0.48
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (14 bp):
TTAATTAATTATAA
Found at i:7466296 original size:34 final size:34
Alignment explanation
Indices: 7466256--7466321 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
7466246 CGATATTAAT
7466256 TATTAGAATAAATTATT-AT-ATATTAATAATTATG
1 TATTAG-ATAAATT-TTAATAATATTAATAATTATG
**
7466290 TATTAGATTTATTTTAATAATATTAATAATTA
1 TATTAGATAAATTTTAATAATATTAATAATTA
7466322 ATAAATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 2 0.07
33 7 0.25
34 19 0.68
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (34 bp):
TATTAGATAAATTTTAATAATATTAATAATTATG
Found at i:7466334 original size:15 final size:16
Alignment explanation
Indices: 7466303--7466338 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
7466293 TAGATTTATT
7466303 TTAATAATATTAATAA
1 TTAATAATATTAATAA
*
7466319 TTAATAA-ATTATTAA
1 TTAATAATATTAATAA
7466334 TTAAT
1 TTAAT
7466339 TTTTATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAATAATATTAATAA
Found at i:7466424 original size:16 final size:16
Alignment explanation
Indices: 7466384--7466433 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
7466374 TATTGTTGAT
* *
7466384 ATTACTATTAATTTAA
1 ATTAATATTATTTTAA
*
7466400 TTTAA-ATTATTTTAA
1 ATTAATATTATTTTAA
*
7466415 ATTAATATTATTTTTA
1 ATTAATATTATTTTAA
7466431 ATT
1 ATT
7466434 TTTGAATGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
15 13 0.46
16 15 0.54
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTAATATTATTTTAA
Found at i:7466586 original size:19 final size:18
Alignment explanation
Indices: 7466562--7466606 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7466552 ATTTAATTAA
7466562 ATTTTTAACTACAATTTAT
1 ATTTTTAA-TACAATTTAT
**
7466581 ATTTTTAATAGTATTTAT
1 ATTTTTAATACAATTTAT
*
7466599 ATTATTAA
1 ATTTTTAA
7466607 ATATTAGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTTTTAATACAATTTAT
Found at i:7466926 original size:16 final size:17
Alignment explanation
Indices: 7466895--7466927 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7466885 ATATTAAAAC
7466895 AAATAATGATTTGAAAT
1 AAATAATGATTTGAAAT
*
7466912 AAATAATTA-TTGAAAT
1 AAATAATGATTTGAAAT
7466928 TGTAAAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAATGATTTGAAAT
Found at i:7468315 original size:23 final size:22
Alignment explanation
Indices: 7468288--7468357 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 22
7468278 TTTTAACAAG
7468288 TAATAATTATTAGATTATTAATA
1 TAATAATTATTAG-TTATTAATA
*
7468311 TAATAATCTACT--TTATT-ATA
1 TAATAAT-TATTAGTTATTAATA
* *
7468331 TAATAATAATTAGCTTATTATTA
1 TAATAATTATTAG-TTATTAATA
7468354 TAAT
1 TAAT
7468358 TCTTAGTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
19 2 0.05
20 10 0.26
21 5 0.13
22 5 0.13
23 13 0.34
24 3 0.08
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (22 bp):
TAATAATTATTAGTTATTAATA
Found at i:7468356 original size:20 final size:20
Alignment explanation
Indices: 7468290--7468357 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
7468280 TTAACAAGTA
* * *
7468290 ATAATTATTAGATTATTAAT
1 ATAATAATTAGCTTATTATT
7468310 ATAATAATCTA-CTTTATTATAT
1 ATAATAAT-TAGC-TTATTAT-T
7468332 AATAATAATTAGCTTATTATT
1 -ATAATAATTAGCTTATTATT
7468353 ATAAT
1 ATAAT
7468358 TCTTAGTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
20 12 0.30
21 9 0.22
22 10 0.25
23 9 0.22
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (20 bp):
ATAATAATTAGCTTATTATT
Found at i:7468754 original size:21 final size:21
Alignment explanation
Indices: 7468713--7468754 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7468703 AATTATTATC
*
7468713 TTTAATTAAAATATAATAAAT
1 TTTAATTAAAATATAAAAAAT
*
7468734 TTTAATTTATAAT-TAAAAAAT
1 TTTAA-TTAAAATATAAAAAAT
7468755 AAATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTAATTAAAATATAAAAAAT
Found at i:7469036 original size:174 final size:174
Alignment explanation
Indices: 7468746--7469060 Score: 612
Period size: 174 Copynumber: 1.8 Consensus size: 174
7468736 TAATTTATAA
7468746 TTAAAAAATAAATTTATTTGCCAAACTAGCTCAAATAGTTAAGAGTGTATGAATAATTATCTATT
1 TTAAAAAATAAATTTATTTGCCAAACTAGCTCAAATAGTTAAGAGTGTATGAATAATTATCTATT
7468811 TCAAGTCATTTTTGTTTTATCATAAAACAATTTTTTCAATTCACGTTAGCATTTTCAGAATAAAA
66 TCAAGTCATTTTTGTTTTATCATAAAACAATTTTTTCAATTCACGTTAGCATTTTCAGAATAAAA
7468876 TAAAATGAATTTATTAATATTTAAAAAATTACTATGTAAGAGAT
131 TAAAATGAATTTATTAATATTTAAAAAATTACTATGTAAGAGAT
* *
7468920 TTAAAAAATAAATTTATTTGTCAAACTAGCTCAAATAGTTACGAGTGTATGAATAATTATCTATT
1 TTAAAAAATAAATTTATTTGCCAAACTAGCTCAAATAGTTAAGAGTGTATGAATAATTATCTATT
7468985 TCAAGTCATTTTTGTTTTATCATAAAACAATTTTTTCAATTCACGTTAGCATTTTCAGAATAAAA
66 TCAAGTCATTTTTGTTTTATCATAAAACAATTTTTTCAATTCACGTTAGCATTTTCAGAATAAAA
7469050 TAAAATGAATT
131 TAAAATGAATT
7469061 ATGATTATTT
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 139 1.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (174 bp):
TTAAAAAATAAATTTATTTGCCAAACTAGCTCAAATAGTTAAGAGTGTATGAATAATTATCTATT
TCAAGTCATTTTTGTTTTATCATAAAACAATTTTTTCAATTCACGTTAGCATTTTCAGAATAAAA
TAAAATGAATTTATTAATATTTAAAAAATTACTATGTAAGAGAT
Found at i:7469295 original size:8 final size:9
Alignment explanation
Indices: 7469277--7469318 Score: 52
Period size: 8 Copynumber: 4.7 Consensus size: 9
7469267 CGACTTTTTG
7469277 ATAATTATTA
1 ATAA-TATTA
7469287 A-AATATTA
1 ATAATATTA
7469295 ATAATTATTA
1 ATAA-TATTA
7469305 ATAA-ATTA
1 ATAATATTA
7469313 ATAATA
1 ATAATA
7469319 AATAATTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 14 0.48
9 5 0.17
10 10 0.34
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATAATATTA
Found at i:7469300 original size:18 final size:18
Alignment explanation
Indices: 7469277--7469317 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7469267 CGACTTTTTG
7469277 ATAATTATTAA-AATATTA
1 ATAATTATTAATAA-ATTA
7469295 ATAATTATTAATAAATTA
1 ATAATTATTAATAAATTA
7469313 ATAAT
1 ATAAT
7469318 AAATAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAATTATTAATAAATTA
Found at i:7469309 original size:21 final size:21
Alignment explanation
Indices: 7469280--7469319 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7469270 CTTTTTGATA
* *
7469280 ATTATTAAAATATTAATAATT
1 ATTAATAAAATAATAATAATT
*
7469301 ATTAATAAATTAATAATAA
1 ATTAATAAAATAATAATAA
7469320 ATAATTTATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTAATAAAATAATAATAATT
Found at i:7469311 original size:11 final size:11
Alignment explanation
Indices: 7469280--7469321 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7469270 CTTTTTGATA
* *
7469280 ATTATTAAAAT
1 ATTAATAAATT
7469291 ATTAAT-AATT
1 ATTAATAAATT
7469301 ATTAATAAATT
1 ATTAATAAATT
*
7469312 AATAATAAAT
1 ATTAATAAAT
7469322 AATTTATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
ATTAATAAATT
Found at i:7469730 original size:16 final size:17
Alignment explanation
Indices: 7469708--7469754 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
7469698 GAGTAATTCA
7469708 AATATT-ATATATTAATT
1 AATATTAATA-ATTAATT
7469725 -ATATTAATAATTAATT
1 AATATTAATAATTAATT
*
7469741 AATATTAATTATTA
1 AATATTAATAATTA
7469755 TAAATATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATTAATAATTAATT
Found at i:7469772 original size:29 final size:27
Alignment explanation
Indices: 7469707--7469772 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 27
7469697 AGAGTAATTC
*
7469707 AAATATTAT-ATATTAATTATATTAAT
1 AAATATTATAATATTAATTATATAAAT
* *
7469733 AATTAAT-TAATATTAATTATTATAAAT
1 AAATATTATAATATTAATTA-TATAAAT
7469760 ATAATATTATAAT
1 A-AATATTATAAT
7469773 GTTAGTTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.03
26 15 0.48
27 7 0.23
28 4 0.13
29 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
AAATATTATAATATTAATTATATAAAT
Found at i:7469898 original size:20 final size:21
Alignment explanation
Indices: 7469875--7469925 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
7469865 CAAATATTTC
7469875 AATAATTATTAAAT-TA-TTA
1 AATAATTATTAAATATAGTTA
* *
7469894 TAATAAATAAT-AATATAGTTA
1 -AATAATTATTAAATATAGTTA
7469915 AATAATTATTA
1 AATAATTATTA
7469926 TTAATGATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.12
20 18 0.75
21 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AATAATTATTAAATATAGTTA
Found at i:7470329 original size:27 final size:28
Alignment explanation
Indices: 7470299--7470352 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
7470289 TACAAAACTT
* *
7470299 ATTAATTATTATTATTTAA-ACCAATTA
1 ATTAAATATTATAATTTAATACCAATTA
7470326 ATTAAATATTATAATTTAATACCAATT
1 ATTAAATATTATAATTTAATACCAATT
7470353 TATAACAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTAAATATTATAATTTAATACCAATTA
Found at i:7471538 original size:35 final size:35
Alignment explanation
Indices: 7471499--7471624 Score: 98
Period size: 35 Copynumber: 3.5 Consensus size: 35
7471489 ATTTTATTAG
*
7471499 TAATAATTATATTAATTTAATTCGTATATTAATAT
1 TAATAATTATATTAATTTAATTAGTATATTAATAT
*
7471534 TAATAA-TATTATTAATAGTTAATTAG-ATATTAGT-T
1 TAATAATTA-TATTAAT--TTAATTAGTATATTAATAT
* ** * *
7471569 TAATAATAATATATAAAATAATTAGTTTA-TAACAT
1 TAATAATTATAT-TAATTTAATTAGTATATTAATAT
*
7471604 TAATATAATATAATTAATTTA
1 TAATA-ATTAT-ATTAATTTA
7471625 TAATTATATT
Statistics
Matches: 70, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
34 11 0.16
35 31 0.44
36 19 0.27
37 9 0.13
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.47
Consensus pattern (35 bp):
TAATAATTATATTAATTTAATTAGTATATTAATAT
Found at i:7471594 original size:27 final size:26
Alignment explanation
Indices: 7471562--7471637 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
7471552 TTAATTAGAT
7471562 ATTAGTTTAATAATAATATATAAAATA
1 ATTAGTTT-ATAATAATATATAAAATA
* * *
7471589 ATTAGTTTATAACATTAATATAATATA
1 ATTAGTTTATAATAAT-ATATAAAATA
* *
7471616 ATTAATTTATAATTATAT-TAAA
1 ATTAGTTTATAATAATATATAAA
7471638 TTTATATATA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.08
26 8 0.20
27 29 0.73
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (26 bp):
ATTAGTTTATAATAATATATAAAATA
Found at i:7471639 original size:17 final size:16
Alignment explanation
Indices: 7471607--7471657 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
7471597 ATAACATTAA
7471607 TATAATATAATTAATT
1 TATAATATAATTAATT
7471623 TATAAT-TATATTAAATT
1 TATAATATA-ATT-AATT
7471640 TAT-ATATAA--AATT
1 TATAATATAATTAATT
7471653 TATAA
1 TATAA
7471658 ATTTATTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 2 0.06
16 12 0.39
17 9 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TATAATATAATTAATT
Found at i:7472069 original size:14 final size:14
Alignment explanation
Indices: 7472046--7472104 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
7472036 ATAATTATTA
7472046 ATTACATATAATTT
1 ATTACATATAATTT
*
7472060 ATTACTTATAA-TT
1 ATTACATATAATTT
7472073 A-TA-ATATAATTAT
1 ATTACATATAATT-T
7472086 ATTA-ATAATAATATT
1 ATTACAT-ATAAT-TT
7472101 ATTA
1 ATTA
7472105 GATAATTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 5 0.13
12 3 0.08
13 5 0.13
14 14 0.37
15 10 0.26
16 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTACATATAATTT
Found at i:7472091 original size:20 final size:20
Alignment explanation
Indices: 7471987--7472104 Score: 58
Period size: 20 Copynumber: 6.1 Consensus size: 20
7471977 ATTATTATAG
7471987 TATACTTAA-TATAATATAA-
1 TATA-TTAATTATAATATAAT
*
7472006 TACT-TTAATTATTAA-ATATT
1 TA-TATTAATTA-TAATATAAT
* *
7472026 TGTAGTAATTATAAT-T-AT
1 TATATTAATTATAATATAAT
*
7472044 TA-ATTACA-TATAAT-TTAT
1 TATATTA-ATTATAATATAAT
7472062 TACT-TATAATTATAATATAAT
1 TA-TAT-TAATTATAATATAAT
* *
7472083 TATATTAATAATAATATTAT
1 TATATTAATTATAATATAAT
7472103 TA
1 TA
7472105 GATAATTAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
17 10 0.13
18 11 0.14
19 14 0.18
20 35 0.46
21 6 0.08
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (20 bp):
TATATTAATTATAATATAAT
Found at i:7472135 original size:19 final size:20
Alignment explanation
Indices: 7472100--7472146 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7472090 ATAATAATAT
7472100 TATTAGATAATTAAATTGTTA
1 TATTA-ATAATTAAATTGTTA
*
7472121 TATTAATAATT-AATTTTTA
1 TATTAATAATTAAATTGTTA
*
7472140 AATTAAT
1 TATTAAT
7472147 TATACACCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.54
20 6 0.25
21 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
TATTAATAATTAAATTGTTA
Found at i:7472427 original size:22 final size:20
Alignment explanation
Indices: 7472401--7472443 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
7472391 ATTTAACTTC
*
7472401 ATTAATTCAATGATATATTATA
1 ATTAATT-AAT-ATAAATTATA
7472423 ATTAATTAATATAAATTATA
1 ATTAATTAATATAAATTATA
7472443 A
1 A
7472444 CAATTGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTAATTAATATAAATTATA
Found at i:7472493 original size:19 final size:20
Alignment explanation
Indices: 7472469--7472513 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7472459 TAATTATTTT
7472469 ATTATTTAAATATTT-TTA-A
1 ATTATTT-AATATTTATTATA
7472488 ATTA-TTAATATTTATTATA
1 ATTATTTAATATTTATTATA
7472507 ATTATTT
1 ATTATTT
7472514 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 7 0.30
18 5 0.22
19 9 0.39
20 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTATTTAATATTTATTATA
Found at i:7472858 original size:21 final size:24
Alignment explanation
Indices: 7472815--7472876 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 24
7472805 TTATCTGATA
*
7472815 ATAATTAAAATAT-ATTGTATCAT
1 ATAATTAAAATATAATTATATCAT
7472838 -T-ATTAAAATATAATTAT-TCAT
1 ATAATTAAAATATAATTATATCAT
* *
7472859 ATAATTATATTATAATTA
1 ATAATTAAAATATAATTA
7472877 CAATTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 14 0.42
22 6 0.18
23 13 0.39
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (24 bp):
ATAATTAAAATATAATTATATCAT
Found at i:7473343 original size:176 final size:175
Alignment explanation
Indices: 7473094--7473432 Score: 416
Period size: 176 Copynumber: 1.9 Consensus size: 175
7473084 AAAGGATAGA
* *
7473094 ATGATTTGAAATAGATAATTATTATGATAATCTTAACTATTTGAACTAGTTCGACTAACATATTT
1 ATGATTTGAAATAGATAATTATTATAATAATCATAACTATTTGAACTAGTTCGACTAACATATTT
* * * * * *
7473159 ATTTTTTAAATCTCTTATTAATTTTTGAAATATTATTAAATTAATATCATTTTAATCCGAATAAG
66 AGTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATCATTTTAATCCAAATAA-
7473224 CTT-GTATGAAAAGAAACAATTGTTGTATGACAAAATAAAGTTCATT
130 -TTCGTATGAAAAGAAACAATTGTTGTATGACAAAATAAAGTTCATT
* * * * * *
7473270 ATGATTTGAGATAGATAATTGTTCA-AATAGTCATAACTATTTGAACTGGTT-TAGTAA-ATAGA
1 ATGATTTGAAATAGATAATTATT-ATAATAATCATAACTATTTGAACTAGTTCGACTAACAT--A
* * **
7473332 TTTAGTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATTATTTTATTTTAAAT
63 TTTAGTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATCATTTTAATCCAAAT
* * *
7473397 AATTCTTATGAACAGAAACAATTGTTTTATGACAAA
128 AATTCGTATGAAAAGAAACAATTGTTGTATGACAAA
7473433 TTATTAAATA
Statistics
Matches: 138, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
174 4 0.03
175 32 0.23
176 101 0.73
177 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (175 bp):
ATGATTTGAAATAGATAATTATTATAATAATCATAACTATTTGAACTAGTTCGACTAACATATTT
AGTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATCATTTTAATCCAAATAAT
TCGTATGAAAAGAAACAATTGTTGTATGACAAAATAAAGTTCATT
Found at i:7473587 original size:22 final size:20
Alignment explanation
Indices: 7473559--7473622 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
7473549 TAATTGATAA
7473559 TATATTAATCTAATTAAATATT
1 TATATTAA--TAATTAAATATT
*
7473581 TATATTAATATTTAAATATT
1 TATATTAATAATTAAATATT
* * *
7473601 AATATAAATAATATTAATATT
1 TATATTAATAAT-TAAATATT
7473622 T
1 T
7473623 TTAATTTGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
20 20 0.57
21 7 0.20
22 8 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TATATTAATAATTAAATATT
Found at i:7473615 original size:15 final size:14
Alignment explanation
Indices: 7473582--7473620 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
7473572 TTAAATATTT
**
7473582 ATATTAATATTTAA
1 ATATTAATATAAAA
7473596 ATATTAATATAAATA
1 ATATTAATATAAA-A
7473611 ATATTAATAT
1 ATATTAATAT
7473621 TTTTAATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATATTAATATAAAA
Found at i:7474408 original size:17 final size:17
Alignment explanation
Indices: 7474386--7474419 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7474376 AAACTCAATT
*
7474386 TATAATATTTAAATATA
1 TATAATAATTAAATATA
*
7474403 TATAATAATTATATATA
1 TATAATAATTAAATATA
7474420 AAATTATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATAATAATTAAATATA
Found at i:7474415 original size:13 final size:13
Alignment explanation
Indices: 7474399--7474433 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7474389 AATATTTAAA
7474399 TATATATAATAAT
1 TATATATAATAAT
7474412 TATATATAA-AAT
1 TATATATAATAAT
7474424 TAT-TATAATA
1 TATATATAATA
7474434 TCTTATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 7 0.33
13 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATATAATAAT
Found at i:7474421 original size:23 final size:26
Alignment explanation
Indices: 7474390--7474446 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 26
7474380 TCAATTTATA
*
7474390 ATATTTAAATA-TA-TATAATA-ATT
1 ATATATAAATATTATTATAATATATT
*
7474413 ATATATAAA-ATTATTATAATATCTT
1 ATATATAAATATTATTATAATATATT
7474438 ATA-ATAAAT
1 ATATATAAAT
7474447 TCATAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 1 0.04
23 10 0.36
24 12 0.43
25 5 0.18
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATATAAATATTATTATAATATATT
Found at i:7474969 original size:26 final size:25
Alignment explanation
Indices: 7474932--7474983 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
7474922 TTATTACTAT
* *
7474932 TTTATTTATAATATTTAATAAATTA
1 TTTATTAATAATAATTAATAAATTA
7474957 TTTATTAATTAATAATTAATAAATTA
1 TTTATTAA-TAATAATTAATAAATTA
7474983 T
1 T
7474984 ATAATAACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTATTAATAATAATTAATAAATTA
Found at i:7475536 original size:20 final size:20
Alignment explanation
Indices: 7475511--7475629 Score: 77
Period size: 20 Copynumber: 5.8 Consensus size: 20
7475501 AATTATTAAT
* *
7475511 ATTATAATTTATATTATTAC
1 ATTATAATTAATATAATTAC
* *
7475531 ATTATAATAAATATAATTAT
1 ATTATAATTAATATAATTAC
*
7475551 ATTATAATTAATTATAA-TAT
1 ATTATAATTAA-TATAATTAC
*
7475571 ATT-TAATATAAATATAATTAAT
1 ATTATAAT-T-AATATAATT-AC
*
7475593 ATTAATAATTAAATATTTATTA-
1 ATT-ATAATT-AATA-TAATTAC
7475615 ATTA-AA-TAATATAAT
1 ATTATAATTAATATAAT
7475630 ATTGTATAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 19
0.76 0.06 0.17
Matches are distributed among these distances:
17 3 0.04
18 4 0.05
19 5 0.06
20 40 0.48
21 9 0.11
22 8 0.10
23 7 0.08
24 8 0.10
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTATAATTAATATAATTAC
Found at i:7475551 original size:15 final size:15
Alignment explanation
Indices: 7475501--7475629 Score: 80
Period size: 15 Copynumber: 8.9 Consensus size: 15
7475491 TTATATATCA
*
7475501 AATTATTAATATTA-T
1 AATTA-TAATATAATT
*
7475516 AATT-T-ATATTATT
1 AATTATAATATAATT
7475529 ACATTATAATA-AATAT
1 A-ATTATAATATAAT-T
*
7475545 AATTATATTATAATT
1 AATTATAATATAATT
*
7475560 AATTATAATATATTT
1 AATTATAATATAATT
7475575 AA-TATAAATATAATT
1 AATTAT-AATATAATT
*
7475590 AA-TATTA-ATAATT
1 AATTATAATATAATT
* *
7475603 AAATAT-TTATTAATT
1 AATTATAATA-TAATT
7475618 AA--ATAATATAAT
1 AATTATAATATAAT
7475630 ATTGTATAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
12 6 0.06
13 17 0.18
14 13 0.14
15 51 0.54
16 8 0.08
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTATAATATAATT
Found at i:7475622 original size:23 final size:24
Alignment explanation
Indices: 7475565--7475632 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 24
7475555 TAATTAATTA
**
7475565 TAATATATTTAATATAAATA-TAAT
1 TAATATAAATAAT-TAAATATTAAT
* *
7475589 TAATATTAATAATTAAATATTTAT
1 TAATATAAATAATTAAATATTAAT
7475613 TAAT-TAAATAA-TATAATATT
1 TAATATAAATAATTA-AATATT
7475633 GTATAAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 2 0.05
23 18 0.49
24 17 0.46
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TAATATAAATAATTAAATATTAAT
Found at i:7476401 original size:18 final size:18
Alignment explanation
Indices: 7476388--7476430 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7476378 ATTATATTAT
7476388 TTAATTATAATATATTACA
1 TTAA-TATAATATATTACA
*
7476407 TTAATATAATATATT-TA
1 TTAATATAATATATTACA
7476424 TTAATAT
1 TTAATAT
7476431 GCAATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATATAATATATTACA
Found at i:7478294 original size:180 final size:181
Alignment explanation
Indices: 7477116--7479347 Score: 1576
Period size: 181 Copynumber: 12.4 Consensus size: 181
7477106 CTAATTTGAG
* * * * *
7477116 ATAAAATAA-AATAAATTTATTAATATT-TAAAAATTAATAAGTATG-GATTTAAAAAATAATTT
1 ATAAAATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * * **
7477178 TGTTTAT-TAAATC-AGTTCAAATAATTATGATTATTTGAACAATTATCTATTTCAAATTGTTAT
65 TATTT-TCTGAA-CAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTAT
* * * * *** * * * *
7477241 GACTTTTTCTTTTGTCATAAGAA-AAATGTTTTTGTTCATATAAGTTTGTTTAAA
128 GACCTTTTGTTTTATCATAA-AACAATTGTTTCAATTCATACAAGCTTATTCAAA
* * * *** * * *
7477295 ATAAAATAATATTAATCTATTCATATTTTGAAACTTAAGAAGTAAAAGATTTAAAAAATAAATCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * ** * ** * * *
7477360 ATTTACTAAAGTAGTTTAGTTAGTTATAACTATTTAAACAATTCTTTATTTCAAATCATTATGA-
66 ATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* * * *** **
7477424 CATTTGTTTTGTCATAAAATAATTGTTTTTGTTCATAC-AGTCTTATTCGGA
131 CTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAG-CTTATTCAAA
* * * *** * *
7477475 ATAAAGTAATGCTAATGTATTAATATTTTGAAAATTCATAAGTAACG-GATTTAAAAAATGAATC
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAA-GAGATTTAAAAAATAAATC
* ** * * * * * * *
7477539 TGTTGGCCT-AACCAGTGCAAATAGTTATGATTGTTTGAATAATTATCTATTTCAAATAATTATG
65 TATT-TTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATG
* * ** * * * **
7477603 ACCTTTTTTTTTTATCACAAAGTAATTGTTT-ATGTTCGTAAAAGCTTATTTGAA
129 ACC-TTTTGTTTTATCATAAAACAATTGTTTCA-ATTCATACAAGCTTATTCAAA
* ** * * *
7477657 ATAACATAA-ATCTAATTTATTAATATTCTTAAAA-CAATGACTAAGAGATTTAAAAAATGAAA-
1 ATAAAATAATA-CTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAAT
* *
7477719 CTATTTT-TCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT
64 CTATTTTCT-GAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTAT
* * * * * *
7477783 GACATTTTATTTTGTCATAAAACAATTTTTTCTACTCATACAAGCTTATTTC-AA
128 GACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCTTA-TTCAAA
* * * * * *
7477837 ATAAAATTATACAAATTTATTAATATT-TAAACATTTAATAAGTAAAAGATTTAAAAAATAAATT
1 ATAAAATAATACTAATTTATTAATATTCCAAA-AATTAATAAGTAAGAGATTTAAAAAATAAATC
* * ** * * * *
7477901 TGTTTACCAAATAAGTTCAAATAGTCATAACTATTTGAACAATTATTTATTTCAAACCATTATGA
65 TATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGA
* * * ***
7477966 CATTTTGTTTTATCATAAAACAATTGTTTTC-CTCCATACAAGCTTATTTGGA
130 CCTTTTGTTTTATCATAAAACAATTG-TTTCAATTCATACAAGCTTATTCAAA
* * * * * * ** *
7478018 TTAAAATAATATTAATTTTTTAATATTTCAACAATTAATAAGTAAAAGATTTTCAAAATAAATAT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * * * ** * *
7478083 ATTTACCGAACAAGTTCAAATAATCATAACTATTTGAGTAATTATCTATTTAAAATCATTTTGAC
66 ATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* * * * *
7478148 CTTTTGTTTCATCCT-AAACAATTGTATCAATTCATATAGGCTTATTCAAA
131 CTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAA
* * * * *
7478198 ATAAAATAATACTAATTTATTAATATTCCAAAAAATAATGAGTAAGAGATATAAAAAATGAACCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * * *
7478263 ATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGCACAATTATCTATTTCAAATCGTTATCAA
66 ATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* * ** * * * *
7478328 TTTTTGTTTTGTCATAAAACAATCATTCCTATTCATACAAGTTTATTTC-GA
131 CTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCTTA-TTCAAA
* * *
7478379 ATAAAATAATA-TAAATTTATTAATATTTCAAAAATTAATAAGTAA-AAATTTTAAAAATAAAAT
1 ATAAAATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAAT
* * * * **
7478442 -TATTTTTTGAACATGTTCAAATAGTTATGACTATTTGAACAATTATCTTTTTTGAAT-AGTTAT
64 CTATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCA-TTAT
* * * * * **
7478505 GACCTTTTGTTTAATTAT-AAACTAAATGTTT-ATGTTCATACAAGCGTATTTGAA
128 GACCTTTTGTTTTATCATAAAAC-AATTGTTTCA-ATTCATACAAGCTTATTCAAA
* * * * * *
7478559 ATAAAATAGTACTAGTTTTATTAATATTCCAAAAATTGATAAGTAAAAAAGTTAAAAAAATAAAT
1 ATAAAATAATACTA-ATTTATTAATATTCCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAAT
* * * * *
7478624 CTATTTACCATG--CAAGTTCAAATAGTTATCACTGTCTGAACAATTATTTATTTCAAAT-AGTT
64 CTATTT-TC-TGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCA-TT
* ** * *
7478686 ATGATCTTTCATTTTATCATAAAACAATTGTTTCAATTCATACAAGTTTATTCAGA
126 ATGACCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAA
** * * *
7478742 ATAAAATAATACTAATTTATTAATATTCTGAAAATTAATAGGTAGGAGATTT-AAAAATAAATAT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * * * ** * **
7478806 GTTTACTGAACAAGTTCAAATAATCAT-GTTCATTTGAACAATTATCTATTTGAAATTGTTATGA
66 ATTTTCTGAACAAGTTCAAATAGTTATAACT-ATTTGAACAATTATCTATTTCAAATCATTATGA
* * * * **
7478870 CCTTTTG-TTTAGTCATAAAACAA-TCTATCCATGCA-A-AA-C-T-GGCAAA
130 CCTTTTGTTTTA-TCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAA
* * ** * *** *
7478916 A-AAAAAAATATTGGTCTATTAATATTTTGAAAATTAAT-A--AA-AGATTTAAAAACTAAATCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * * *
7478976 ATTTAC-GAAAACAGTTCAAATAGTTATGATTATTTGAACAATTATCTATCTT-AAATCATTATG
66 ATTTTCTGAACA-AGTTCAAATAGTTATAACTATTTGAACAATTATCTAT-TTCAAATCATTATG
* * * * * * **
7479039 ATC-TTTATTTTGTCATGAAACAATTGTTTC-TTTCCATACATGCTTATTCGGA
129 ACCTTTTGTTTTATCATAAAACAATTGTTTCAATT-CATACAAGCTTATTCAAA
* * *
7479091 TTAAAATAATACTAATTTAATAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAAATAAATA
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATC
* * * * * * * * *
7479156 TGTTTACAGAACCAGTTCAAATAGTTA-AGACTATTAGAACAGTTATCTATTTTAAATCATTCTA
65 TATTTTCTGAACAAGTTCAAATAGTTATA-ACTATTTGAACAATTATCTATTTCAAATCATTATG
* * * * *
7479220 AAC-TTTG-TTTAGTCATAAAACAATTATTTCAGTTCATATAAGCTTATTTAAA
129 ACCTTTTGTTTTA-TCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAA
* ** * *
7479272 ATAAAATAATACTAATTTATTAACATTTGAAACATTAATGAGTAAGAGATTTAAAAATATAAATC
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAA-ATAAATC
* *
7479337 TGTTTACTGAA
65 TATTTTCTGAA
7479348 GAATTAGAAC
Statistics
Matches: 1613, Mismatches: 365, Indels: 148
0.76 0.17 0.07
Matches are distributed among these distances:
169 24 0.01
170 67 0.04
171 5 0.00
172 1 0.00
173 32 0.02
174 5 0.00
175 3 0.00
176 28 0.02
177 3 0.00
178 3 0.00
179 54 0.03
180 541 0.34
181 620 0.38
182 113 0.07
183 107 0.07
184 5 0.00
185 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
ATTTTCTGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGAC
CTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAA
Found at i:7479823 original size:31 final size:31
Alignment explanation
Indices: 7479788--7479852 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
7479778 AAATCTTTAC
7479788 TTATTAATT-TTGA-AATATTAATTAATTAGAA
1 TTATTAATTATT-ATAAT-TTAATTAATTAGAA
*
7479819 TTATTAATTATTATAATTTAATTAATTATAA
1 TTATTAATTATTATAATTTAATTAATTAGAA
7479850 TTA
1 TTA
7479853 AATATGAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 26 0.84
32 5 0.16
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
TTATTAATTATTATAATTTAATTAATTAGAA
Found at i:7479853 original size:14 final size:13
Alignment explanation
Indices: 7479806--7479853 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
7479796 TTTGAAATAT
**
7479806 TAATTAATTAGAA
1 TAATTAATTATTA
*
7479819 TTATTAATTATTA
1 TAATTAATTATTA
7479832 TAATTTAATTAATTA
1 TAA-TTAATT-ATTA
7479847 TAATTAA
1 TAATTAA
7479854 ATATGAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 12 0.41
14 10 0.34
15 7 0.24
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TAATTAATTATTA
Found at i:7480246 original size:22 final size:22
Alignment explanation
Indices: 7480221--7480264 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7480211 TATATATTTA
*
7480221 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7480243 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7480265 GACAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7480864 original size:278 final size:279
Alignment explanation
Indices: 7480364--7480907 Score: 869
Period size: 277 Copynumber: 2.0 Consensus size: 279
7480354 TAAACCTAAG
*
7480364 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTTTAGATAT
1 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTGTAGATAT
* * *
7480429 AATATTAGTTATTTAAACTTTTAACAGGCCTTCATCATGTGTAGGTAAAGAAGAAAGAAGCCTTC
66 AATATTAGTTATTTAAACTTTTAACAGGCCCTCATCACGTGTAGGTAAAGAAGAAAAAAGCCTTC
* *
7480494 CACGTGACAAATTAGGAAAGGGCAACGGAAAGAAAGTCCTGGCTCTCATGCCATGTGGAAAAACT
131 CACGTGACAAATTAGGAAAGGGCAACGGAAAGAAAGTCCTGGCTCTCATACCATGTGCAAAAACT
* * *
7480559 AAGAAATAAAACTGTATGGAAAACTAAGAATAAAACTAAATGTATATT-GAAAACTGCTTATAAA
196 AAAAAATAAAACTGTATGGAAAACTAAGAATAAAACTAAATGTATATTAAAAAACTGCTCATAAA
7480623 GAATTATACAAGCAATTAT
261 GAATTATACAAGCAATTAT
*
7480642 GTGCTTGTATAATAAACTTATTAGATTATTAATATT-AAATAAAAATTAAATAATTTGTAGATAT
1 GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTGTAGATAT
* * * * *
7480706 TATATTAGTTATTTGAACTTTTAATAGGCCC-CTATCACGTGTAGGTGAAGAGGAAAAAAGCCTT
66 AATATTAGTTATTTAAACTTTTAACAGGCCCTC-ATCACGTGTAGGTAAAGAAGAAAAAAGCCTT
* * *
7480770 CCATGTGACAAATTAGGAAAGGGCAATGGAAAGAAAAGTCTTGGCTCTCATACCATGTGCAAAAA
130 CCACGTGACAAATTAGGAAAGGGCAACGGAAAG-AAAGTCCTGGCTCTCATACCATGTGCAAAAA
* *
7480835 CTAAAAAATAAAACTGTGTGGAAAACTAAGAGTAAAACTAAATGTATATTAAAAAACTGCTCATA
194 CTAAAAAATAAAACTGTATGGAAAACTAAGAATAAAACTAAATGTATATTAAAAAACTGCTCATA
7480900 AAGAATTA
259 AAGAATTA
7480908 CCAATATTAT
Statistics
Matches: 243, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
276 1 0.00
277 112 0.46
278 110 0.45
279 20 0.08
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.30
Consensus pattern (279 bp):
GTGCTTGTATAATAAACTTATTAAATTATTAATATTAAAATAAAAATTAAATAATTTGTAGATAT
AATATTAGTTATTTAAACTTTTAACAGGCCCTCATCACGTGTAGGTAAAGAAGAAAAAAGCCTTC
CACGTGACAAATTAGGAAAGGGCAACGGAAAGAAAGTCCTGGCTCTCATACCATGTGCAAAAACT
AAAAAATAAAACTGTATGGAAAACTAAGAATAAAACTAAATGTATATTAAAAAACTGCTCATAAA
GAATTATACAAGCAATTAT
Found at i:7482448 original size:22 final size:25
Alignment explanation
Indices: 7482396--7482459 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
7482386 TAATTGGTTT
7482396 TTAAT-TAATTATTAA-TATTATAAA
1 TTAATATAA-TATTAATTATTATAAA
7482420 TTAATATAATATTAATTA-TATAAA
1 TTAATATAATATTAATTATTATAAA
*
7482444 -T-ATATAATAATAATTA
1 TTAATATAATATTAATTA
7482460 AGTAAAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 14 0.38
23 1 0.03
24 17 0.46
25 5 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
TTAATATAATATTAATTATTATAAA
Found at i:7482465 original size:22 final size:22
Alignment explanation
Indices: 7482414--7482459 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
7482404 TTATTAATAT
*
7482414 TATAAATTAATATAATATTAATTA
1 TATAAA-T-ATATAATAATAATTA
7482438 TATAAATATATAATAATAATTA
1 TATAAATATATAATAATAATTA
7482460 AGTAAAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 1 0.05
24 6 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATAAATATATAATAATAATTA
Found at i:7483209 original size:180 final size:179
Alignment explanation
Indices: 7482681--7483758 Score: 905
Period size: 180 Copynumber: 6.1 Consensus size: 179
7482671 TTACAATAGC
* * * * * * * ***
7482681 ATTATTATTCCAAAAATTAATGAGTAAGAGATTTAAAAAATGAATCTATTTACCAAACAAGTTCA
1 ATTAATATTTCAAAAATTAATAAGTAA-AAATTTAAAAAATAAATTTGTTTA-TTGACAAGTTCA
* * * *
7482746 AATAGTTATGACTATTTAGACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGCCATAAA
64 AATAATTATGACTATTTAAACAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAA
* *
7482811 ACAATTGTTTCTGTTCATACAAGCTTATTTC-AAATAAAATAATA-TAAATTT
129 ACAATTGTTTCTATTCATACAAACTTA-TTCAAAATAAAATAATACT-AATTT
* * ** * * * * *
7482862 ATTAATATTCCAAAGACCAATAAGTAAAAATATATAAAATAAATTTATTTTTTGAACACGTTCAA
1 ATTAATATTTCAAAAATTAATAAGTAAAAATTTAAAAAATAAATTTGTTTATTG-ACAAGTTC-A
* * *
7482927 AATAATTATGACCATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTTTTTTGTCATAAA
64 AATAATTATGACTATTTAAACAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAA
* *
7482992 CCAATTGTTTCTATTCATA-AAAGCTTATTCGAAATAAAATAATACTAATTT
129 ACAATTGTTTCTATTCATACAAA-CTTATTCAAAATAAAATAATACTAATTT
***
7483043 ATTAA-ATTTCAAAAATTAATAAGTAAAATATTTAAAAAATAAATTTGTTTATTGAGTGGTTCAA
1 ATTAATATTTCAAAAATTAATAAGTAAAA-ATTTAAAAAATAAATTTGTTTATTGACAAGTTCAA
* * * *
7483107 ATAATTATGACTATTTAAATAATTATTTATTTCAAATTTTTATGATCCTTTTGTTTTGTAATAAA
65 ATAATTATGACTATTTAAACAATTATCTATTTCAAATTATTATGA-CCTTTTGTTTTGTCATAAA
*
7483172 ACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACTAATTT
129 ACAATTGTTTCTATTCATACAAACTTATTCAAAATAAAATAATACTAATTT
** * * * * *
7483223 ATTAATATTTTGAAAATTAATAAG---AGATTTAAAAACTATATCTGTTTATAAGACCAA-TTCA
1 ATTAATATTTCAAAAATTAATAAGTAAAAATTTAAAAAATAAATTTGTTTAT-TGA-CAAGTTCA
* * ** *
7483284 AATAGTTATGACTATTTTAAA-AATTATCTATCTCAAATTGGTATGATC-TTTGTTTTGTCATAA
64 AATAATTATGACTA-TTTAAACAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAA
* * * * * * **
7483347 AATAATTGTTTCTATCCATACAAACTTATTCAGAGTAAAATATTGCTAAACT
128 AACAATTGTTTCTATTCATACAAACTTATTCAAAATAAAATAATACTAATTT
* * * * * *
7483399 AATAATA-TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTATTTGTTGAACTAGTTC
1 ATTAATATTTC-AAAAATTAATAAGTAA-AAATTTAAAAAATAAATTTGTTTATTG-ACAAGTTC
* *
7483463 AAATAATTAT--CCATTT---C-A--A---A--TC--A-T-TT-TGACCTTTTGTTTAGTCATAA
63 AAATAATTATGACTATTTAAACAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAA
* *** ** *
7483510 AATAATTG-TTC-AGTTCATACATGTTTATTTGAAATAAAATAATACTATTTT
128 AACAATTGTTTCTA-TTCATACAAACTTATTCAAAATAAAATAATACTAATTT
* * * *** *
7483561 ATTAACA-TTCAAAAAATTAATAAGCAAGGAA-TTAAAAAATAAATTTGTTTACCAAACAAGTTT
1 ATTAATATTTC-AAAAATTAATAAGTAA-AAATTTAAAAAATAAATTTGTTTA-TTGACAAGTTC
* * * * *
7483624 AAATAGTTATGACTATTTAAACAATTATC-ATTTTAAAATCATTATGACCTTTTGTTTTATTATA
63 AAATAATTATGACTATTTAAACAATTATCTA-TTTCAAATTATTATGACCTTTTGTTTTGTCATA
* * *
7483688 AAACAATTGTTTC-ATTTCATA-AAAGCTTATCCAAAATAAAATAATATTACTTT
127 AAACAATTGTTTCTA-TTCATACAAA-CTTATTCAAAATAAAATAATACTAATTT
*
7483741 ATCAATATTTCAAAAATT
1 ATTAATATTTCAAAAATT
7483759 GAGAAATAAT
Statistics
Matches: 720, Mismatches: 133, Indels: 89
0.76 0.14 0.09
Matches are distributed among these distances:
161 33 0.05
162 57 0.08
163 28 0.04
164 1 0.00
165 1 0.00
166 1 0.00
167 3 0.00
169 2 0.00
171 1 0.00
172 1 0.00
174 2 0.00
175 2 0.00
176 76 0.11
177 24 0.03
178 45 0.06
179 77 0.11
180 197 0.27
181 168 0.23
182 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (179 bp):
ATTAATATTTCAAAAATTAATAAGTAAAAATTTAAAAAATAAATTTGTTTATTGACAAGTTCAAA
TAATTATGACTATTTAAACAATTATCTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAAAC
AATTGTTTCTATTCATACAAACTTATTCAAAATAAAATAATACTAATTT
Found at i:7483766 original size:36 final size:36
Alignment explanation
Indices: 7483726--7483799 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
7483716 ATCCAAAATA
*
7483726 AAATAATATTACTTTATCAATATTTCAAAAATTGAG
1 AAATAATATTACTTTATCAATATTTCAAAAATTAAG
*
7483762 AAATAATATTACTTTATTAATATTTCAAAAATTAAG
1 AAATAATATTACTTTATCAATATTTCAAAAATTAAG
7483798 AA
1 AA
7483800 GTTGGAGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (36 bp):
AAATAATATTACTTTATCAATATTTCAAAAATTAAG
Found at i:7484137 original size:171 final size:171
Alignment explanation
Indices: 7483839--7484151 Score: 407
Period size: 171 Copynumber: 1.8 Consensus size: 171
7483829 TCAAATCAAC
* * * * *
7483839 TCAAATAGTTATGGCCATTTGAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCAT
1 TCAAATAATTATGACCATTTAAACAATTATATATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* * * * * * *
7483904 AAAACAATTGTTTTTCATCATACAAGCCTAATTAGAATAAAATAATACTAGTTTATTAATATT-T
66 AAAACAATTATTTATCATCATACAAGCCTAATTAGAAGAAAATAAAACTAATCTAATAATATTAT
7483968 CAAAAATTAATAAGTAGGAGATTATCTGTTTACTGAACTAGT
131 CAAAAA-TAATAAGTAGGAGATTATCTGTTTACTGAACTAGT
* *
7484010 TCAAATAATTATGACTATTTAAACAATTATATATTTCAAGTCATTAT-AACTTTTTGTTTTGTCA
1 TCAAATAATTATGACCATTTAAACAATTATATATTTCAAATCATTATGAAC-TTTTGTTTTGTCA
** * *
7484074 TAAAACAATTATTTATGTTCATACAAG-CTTATTCGAAAGAAAATAAAACTAATCTAATAATATT
65 TAAAACAATTATTTATCATCATACAAGCCTAATTAG-AAGAAAATAAAACTAATCTAATAATATT
*
7484138 ATGAAAAATAATAA
129 ATCAAAAATAATAA
7484152 TTAAAGATTT
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
170 9 0.08
171 105 0.88
172 6 0.05
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.40
Consensus pattern (171 bp):
TCAAATAATTATGACCATTTAAACAATTATATATTTCAAATCATTATGAACTTTTGTTTTGTCAT
AAAACAATTATTTATCATCATACAAGCCTAATTAGAAGAAAATAAAACTAATCTAATAATATTAT
CAAAAATAATAAGTAGGAGATTATCTGTTTACTGAACTAGT
Found at i:7485374 original size:25 final size:23
Alignment explanation
Indices: 7485315--7485375 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 23
7485305 TTTGAATATG
7485315 TATAATTAATA-CATAATCAGAT
1 TATAATTAATATCATAATCAGAT
7485337 TA-AATT-AT-T-ATAATCATGAT
1 TATAATTAATATCATAATCA-GAT
7485357 TATAATTCAATATCATAAT
1 TATAATT-AATATCATAAT
7485376 GTTGAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
19 7 0.22
20 7 0.22
21 8 0.25
22 2 0.06
23 2 0.06
24 1 0.03
25 5 0.16
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (23 bp):
TATAATTAATATCATAATCAGAT
Done.