Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 41 of 106
Found at i:7485579 original size:22 final size:20
Alignment explanation
Indices: 7485545--7485586 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
7485535 TTATTTAGTT
7485545 TTAATAATCAATTTAAAATATA
1 TTAATAATCAA-TT-AAATATA
7485567 TTAATAGAT-AATTAAATATA
1 TTAATA-ATCAATTAAATATA
7485587 ATACAAGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
22 8 0.42
23 2 0.11
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TTAATAATCAATTAAATATA
Found at i:7485670 original size:23 final size:23
Alignment explanation
Indices: 7485644--7485723 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
7485634 AAACTATTGC
*
7485644 AATTATTTAAATTAAAAATAAAT
1 AATTAATTAAATTAAAAATAAAT
* * * *
7485667 AATTAAGTAAA-TAGATAATCATT
1 AATTAATTAAATTA-AAAATAAAT
*
7485690 AATTAATTAAATATAAAACTAAAT
1 AATTAATTAAAT-TAAAAATAAAT
7485714 AATTATATTA
1 AATTA-ATTA
7485724 TTATAAACAT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
22 2 0.05
23 25 0.58
24 10 0.23
25 6 0.14
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (23 bp):
AATTAATTAAATTAAAAATAAAT
Found at i:7487201 original size:181 final size:181
Alignment explanation
Indices: 7486477--7488702 Score: 1903
Period size: 181 Copynumber: 12.4 Consensus size: 181
7486467 TATTTCAAAT
* * * * * * *
7486477 AGAAACAATTATTGTATGACAAAACAAAAGATCATAATGATTTGAAATAAATGATTATTCAAATC
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * ** * *
7486542 GTCAGAACTATATGAACTTACTCGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTT
66 GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
* * * * * * *
7486607 T-AAATTTTTAATAAATTAGTACTATTTTTATTTCGAAAAAGTTTTTATGACC
131 TGAAA-TATTAATAAATTAGTATTA-TTTTAATTCGAATAAGCTTGTATGAAC
* * *
7486659 AGAAACAATTGGTTTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTCTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* *** * *
7486724 GTCATAACTATTTGAACGTG-TTAAAAAACATATTTATTTTTTAAA-ATTTTACTTATTAATTTT
66 GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
* *
7486787 TGAAATATTAATAAATTTA-AATTATTTT-ATTCGAAATAAGCTTGCATGAAC
131 TGAAATATTAATAAA-TTAGTATTATTTTAATTCG-AATAAGCTTGTATGAAC
* * *
7486838 A-AAGCTAATTGTTTTATGACAAAACAAAAGGTCATAATG-TTATGAAAATAGATAATTGGTCAG
1 AGAAAC-AATTGTTTTATGACAAAACAAAAGGTCATAATGATT-TG-AAATAGATAATTGTTCAA
* * * * * *
7486901 ATAATCATAACTATTTGAACTTATTCGGTAAACATATTCT-TTTTTTTAAT-TTTCTCACTCATT
63 ATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATT-TATTTTTTAAATCTTT-T-ACTTATT
* * * * * *
7486964 AATTTTTGGAATATTAATAAATTAGTATTATCTTACTTCAAATAAGCTTATATGAAT
125 AATTTTTGAAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC
* * * * * * * *
7487021 TGAAACAAGTGTTTTATTAGAAAAGAAAATGTCATAATGATTTGAAATAGATAATTATTGAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * * * *
7487086 TTAATGACTATTTGAACTTGTTTGGTAAATATATTTATTTTTTAAATCTTTTACTTATTAATTGT
66 GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
* * * *
7487151 TAAAATATTAATTAATTAATATTATTTTAATTCGAATATA-CTTGTATGAAT
131 TGAAATATTAATAAATTAGTATTATTTTAATTCGAATA-AGCTTGTATGAAC
* ** * *
7487202 AGAAATAATTGTTTTATGACAAAACAAAAAATCATAA-CATATTGAAATAAATAATTGCTT-AAA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGAT-TTGAAATAGATAATTG-TTCAAA
* * *
7487265 TAGCCATAA-TGATTAGAACTTGTTTGGTAAACAGATTTA-TTTTTAAGTCTTTTACTTATTAAT
64 TAGTCATAACT-ATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAAT
*
7487328 TGTCTT--AATATTAATAAATTTGTATTATTTT-ATTCGAAATAAGCTTAG-ATGAAC
128 T-T-TTGAAATATTAATAAATTAGTATTATTTTAATTCG-AATAAGCTT-GTATGAAC
* * * * * * *
7487382 AAAAACAATTCTTTTATTACAAAACAAAAGGTTATAGCT-ATTTCAAATAGATAATTATTCAAAT
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATA-ATGATTTGAAATAGATAATTGTTCAAAT
* * * * * * * * *
7487446 AGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTGTA-TTATTAATT
65 AGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCT-TTTACTTATTAATT
* * * * *
7487510 TTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAAC
129 TTTGAAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC
* * * * ** *
7487563 TA-AAACAACTCTTTTATGACAAATCAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAAT
1 -AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAAT
* * * * * * * *
7487627 TGTCATGATTATTT-AATCTAGTGTGGTAAAC--A--TATTTTTAAAATTTTTTACTTACTAA-T
65 AGTCATAACTATTTGAA-CTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* * * * **
7487686 TGTCAAATTATTAATAAATTAGTATTATTTTAATGCAAATAAGCTTGTATGAGT
129 TTTGAAA-TATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC
** * * *
7487740 AGAAACAATTGTTTTACAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
** * * * * * *
7487805 GTCATAACTATTTGAACCAGTTTGATACATAGATTTGTTGTCTAAATC----ACTTATTAATTTT
66 GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
* * * * *
7487866 TGAAATATTAATAGATTAGTATTACTTT-ATTCCAAATAAACTTATATGAAC
131 TGAAATATTAATAAATTAGTATTATTTTAATT-CGAATAAGCTTGTATGAAC
* * * * *
7487917 A-AAACATTTGTTGTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * * * * *
7487981 GT-ATAATTTTTTGAACTAGTTAGGTAAACAGAATTATTTTTTAAATCTCTTACTTATTAGTTTT
66 GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
* * * * *
7488045 TGAAATATTAATAAATTCA-TTTTATTTTATTTCAAATAAGCTAGTATGAAT
131 TGAAATATTAATAAATT-AGTATTATTTTAATTCGAATAAGCTTGTATGAAC
* * * * *
7488096 TGAGAA-AATTGTTTTATGACAAGATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATAT
1 AGA-AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAAT
* * * * ** * *
7488160 AGTCTTAACTATTTGAA-TTGGTTCGGCAAACAAATTTATTTTTTAAATCCCTGAGTTATTAATT
65 AGTCATAACTATTTGAACTT-GTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* * * * * *
7488224 TTTGGAATATTATTAGATTAGTATTGTTTTATTTTGAATAAGCTTGTATGAAC
129 TTTGAAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC
* * * * * * *
7488277 AAAAATAATTGTTTTATGACATAACAAAAGGTTATAATAATTTGAAATATAGAATTGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* *** * *
7488342 GTCATAACTATTTGAACTGGTTCAATAAATAGATTCATTTTTTAAATC---T-CTTATTAATTTT
66 GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
* * * * * *
7488403 TGAAAGATTAATAAATTATTATTATTTTATTTTGAATAATCATGTATGATA-
131 TGAAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGA-AC
* * * * * *
7488454 A-AAAGCAATTGTTATATGACCAATCAAAAGATAATAATGATTTGAAATAGATAATTGTTGAAAT
1 AGAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAAT
* * ** * * * * *
7488518 -GACCATAATTATTTGAACTAATTTCGCAAATAGATTCACTTTTTAAATC----ACTTTATTAAT
65 AG-TCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTAC-TTATTAAT
* * * **
7488578 TTTTGGAATATTAATAAATTAGAATTATTTTATTTTAAATAAGCTTGTATGAAC
128 TTTTGAAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC
* * *
7488632 TGAAACAATTATTTTATGACAAAAC---A--TCATAATGATTTTAAATAGATAATTGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
7488692 GTCATAACTAT
66 GTCATAACTAT
7488703 CTAAATTTGC
Statistics
Matches: 1657, Mismatches: 317, Indels: 149
0.78 0.15 0.07
Matches are distributed among these distances:
173 38 0.02
174 1 0.00
175 35 0.02
176 72 0.04
177 312 0.19
178 87 0.05
179 115 0.07
180 262 0.16
181 501 0.30
182 146 0.09
183 80 0.05
184 8 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
GTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTT
TGAAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC
Found at i:7487432 original size:361 final size:359
Alignment explanation
Indices: 7486479--7488698 Score: 1712
Period size: 361 Copynumber: 6.2 Consensus size: 359
7486469 TTTCAAATAG
* * * * * *
7486479 AAACAATTATTGTATGACAAAACAAAAGATCATAATGATTTGAAATAAATGATT-ATTCAAATCG
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAA-CATTTGAAATAAATAATTGATTCAAATAG
* ** *
7486543 TCAGAACTA-TATGAACTTACTCGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTT
65 TCATAA-TATTA-GAACTTGTTCGGTAAACAGATTTA-TTTTTAAATCTTTTACTTATTAATTTT
* * * * ** ** *
7486607 TAAATTTTTAATAAATTAGTACTATTTTTATTTCGAAA-AAGTTTTTATGACCAGAAACAATTGG
127 TGAA-TATTAATAAATTAGTATTA-TTTTATTTCGAAATAAGCTTAGATGAATAGAAACAATTGT
* *
7486671 TTTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTCTTCAAATAGTCATAACTATT
190 TTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATT
* *** * *
7486736 TGAACGTG-TTAAAAAACATATTTATTTTTTAAA-ATTTTACTTATTAATTTTTGAAATATTAAT
255 TGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAAT
* * *
7486799 AAATTTA-AATTATTTT-ATTCGAAATAAGCTTGCATGAACA
320 TAA-TTAGTATTATTTTAATTCG-AATAAGCTTGTATGAACA
* ** * * *
7486839 AAGCTAATTGTTTTATGACAAAACAAAAGGTCATAATGTTATGAAAATAGATAATTG-GTCAGAT
1 AAAC-AATTGTTTTATGACAAAACAAAAGGTCATAACATT-TG-AAATAAATAATTGATTCAAAT
* * * * * * *
7486903 AATCATAACTATTTGAACTTATTCGGTAAACATATTCTTTTTTTTAAT-TTTCTCACTCATTAAT
63 AGTCATAA-TATTAGAACTTGTTCGGTAAACAGATT-TATTTTTAAATCTTT-T-ACTTATTAAT
* * * * *
7486967 TTTTGGAATATTAATAAATTAGTATTATCTTACTTC-AAATAAGCTTATATGAATTGAAACAAGT
124 TTTT-GAATATTAATAAATTAGTATTATTTTATTTCGAAATAAGCTTAGATGAATAGAAACAATT
* * * * * * * *
7487031 GTTTTATTAGAAAAGAAAATGTCATAATGATTTGAAATAGATAATTATTGAAATATTAATGACTA
188 GTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTA
* * * *
7487096 TTTGAACTTGTTTGGTAAATATATTTATTTTTTAAATCTTTTACTTATTAATTGTTAAAATATTA
253 TTTGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTA
* *
7487161 ATTAATTAATATTATTTTAATTCGAATATA-CTTGTATGAATA
318 ATTAATTAGTATTATTTTAATTCGAATA-AGCTTGTATGAACA
* ** *
7487203 GAAATAATTGTTTTATGACAAAACAAAAAATCATAACATATTGAAATAAATAATTGCTT-AAATA
1 -AAACAATTGTTTTATGACAAAACAAAAGGTCATAACAT-TTGAAATAAATAATTGATTCAAATA
* * *
7487267 GCCATAATGATTAGAACTTGTTTGGTAAACAGATTTATTTTTAAGTCTTTTACTTATTAATTGTC
64 GTCATAAT-ATTAGAACTTGTTCGGTAAACAGATTTATTTTTAAATCTTTTACTTATTAATT-T-
* * * *
7487332 TT-AATATTAATAAATTTGTATTATTTTA-TTCGAAATAAGCTTAGATGAACAAAAACAATTCTT
126 TTGAATATTAATAAATTAGTATTATTTTATTTCGAAATAAGCTTAGATGAATAGAAACAATTGTT
* * * * * *
7487395 TTATTACAAAACAAAAGGTTATAGCT-ATTTCAAATAGATAATTATTCAAATAGTCCTAATTATT
191 TTATGACAAAACAAAAGGTCATA-ATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATT
* * * * * * * *
7487459 TAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTGTA-TTATTAATTTTTGGATTATTAA
255 TGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCT-TTTACTTATTAATTTTTGAAATATTAA
* * * *
7487523 TAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTA
319 TTAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC-A
* * * * * *
7487565 AAACAACTCTTTTATGACAAATCAAAAGGTTATAACAATTTGAAATAGATAATT-ATTCAAATTG
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAAC-ATTTGAAATAAATAATTGATTCAAATAG
* * * * * *
7487629 TCATGATTATTTA-ATCTAGTGT-GGTAAAC--A--TATTTTTAAAATTTTTTACTTACTAATTG
65 TCAT-AATA-TTAGAACTTGT-TCGGTAAACAGATTTATTTTT-AAATCTTTTACTTATTAATTT
** * * *
7487688 TCAAATTATTAATAAATTAGTATTATTTTAATGC-AAATAAGCTT-GTATGAGTAGAAACAATTG
126 TTGAA-TATTAATAAATTAGTATTATTTTATTTCGAAATAAGCTTAG-ATGAATAGAAACAATTG
** * * **
7487751 TTTTACAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTCAAATAGTCATAACTAT
189 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
** * * * * * * *
7487816 TTGAACCAGTTTGATACATAGATTTGTTGTCTAAATC----ACTTATTAATTTTTGAAATATTAA
254 TTGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAA
* * * *
7487877 -TAGATTAGTATTACTTT-ATTCCAAATAAACTTATATGAACA
319 TTA-ATTAGTATTATTTTAATT-CGAATAAGCTTGTATGAACA
* * * * * *
7487918 AAACATTTGTTGTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTG-TTCAAATAG
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAA-CATTTGAAATAAATAATTGATTCAAATAG
* * * * * * *
7487982 T-ATAATTTTTTGAACTAGTTAGGTAAACAGAATTATTTTTTAAATCTCTTACTTATTAGTTTTT
65 TCATAA-TATTAGAACTTGTTCGGTAAACAGATTTA-TTTTTAAATCTTTTACTTATTAATTTTT
* *
7488046 GAAATATTAATAAATTCA-TTTTATTTTATTTC-AAATAAGC-TAGTATGAATTGAGAA-AATTG
128 G-AATATTAATAAATT-AGTATTATTTTATTTCGAAATAAGCTTAG-ATGAATAGA-AACAATTG
* * * * * *
7488107 TTTTATGACAAGATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATATAGTCTTAACTAT
189 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* * ** * * *
7488172 TTGAA-TTGGTTCGGCAAACAAATTTATTTTTTAAATCCCTGAGTTATTAATTTTTGGAATATT-
254 TTGAACTT-GTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTA
* * *
7488235 ATTAGATTAGTATTGTTTTATTTTGAATAAGCTTGTATGAACAA
318 ATTA-ATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC-A
* * * * * *
7488279 AAATAATTGTTTTATGACATAACAAAAGGTTATAATAATTTGAAATATAGAATTG-TTCAAATAG
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAA-CATTTGAAATAAATAATTGATTCAAATAG
* * ** * *
7488343 TCATAACTATTTGAACTGGTTCAATAAATAGATTCATTTTTTAAATC---T-CTTATTAATTTTT
65 TCATAA-TATTAGAACTTGTTCGGTAAACAGATTTA-TTTTTAAATCTTTTACTTATTAATTTTT
* * * * * *
7488404 GAAAGATTAATAAATTATTATTATTTTATTTTG-AATAATCAT-GTATG-ATAAAAAGCAATTGT
128 G-AATATTAATAAATTAGTATTATTTTATTTCGAAATAAGCTTAG-ATGAATAGAAA-CAATTGT
* * * * * * * * *
7488466 TATATGACCAATCAAAAGATAATAATGATTTGAAATAGATAATTGTTGAAAT-GACCATAATTAT
190 TTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAG-TCATAACTAT
** * * * * * * *
7488530 TTGAACTAATTTCGCAAATAGATTCACTTTTTAAATC----ACTTTATTAATTTTTGGAATATTA
254 TTGAACTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTAC-TTATTAATTTTTGAAATATTA
* * * ** *
7488591 ATAAATTAGAATTATTTTATTTTAAATAAGCTTGTATGAACTG
318 ATTAATTAGTATTATTTTAATTCGAATAAGCTTGTATGAAC-A
* * * *
7488634 AAACAATTATTTTATGACAAAAC---A--TCATAATGATTTTAAATAGATAATTG-TTCAAATAG
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAA-CATTTGAAATAAATAATTGATTCAAATAG
7488693 TCATAA
65 TCATAA
7488699 CTATCTAAAT
Statistics
Matches: 1505, Mismatches: 282, Indels: 156
0.77 0.15 0.08
Matches are distributed among these distances:
350 36 0.02
351 4 0.00
352 17 0.01
353 58 0.04
354 51 0.03
355 75 0.05
356 150 0.10
357 26 0.02
358 270 0.18
359 7 0.00
360 61 0.04
361 349 0.23
362 202 0.13
363 104 0.07
364 86 0.06
365 9 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (359 bp):
AAACAATTGTTTTATGACAAAACAAAAGGTCATAACATTTGAAATAAATAATTGATTCAAATAGT
CATAATATTAGAACTTGTTCGGTAAACAGATTTATTTTTAAATCTTTTACTTATTAATTTTTGAA
TATTAATAAATTAGTATTATTTTATTTCGAAATAAGCTTAGATGAATAGAAACAATTGTTTTATG
ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
TGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATTAATTA
GTATTATTTTAATTCGAATAAGCTTGTATGAACA
Found at i:7488127 original size:714 final size:713
Alignment explanation
Indices: 7486477--7489700 Score: 2000
Period size: 714 Copynumber: 4.5 Consensus size: 713
7486467 TATTTCAAAT
* * *
7486477 AGAAACAATTATTGTATGACAAAAC-AAAAGATCATAATGATTTGAAATAAATGATTATTCAAAT
1 AGAAACAATTGTTGTATGACAAAACAAAAAG-TCATAATGATTTGAAATAAATAATTGTTCAAAT
* * * * * * *
7486541 CGTCAGAACTATATGAACTTA-CTCGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATT
65 AGT-ATAATTATTTGAAC-TAGTTAGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* * * ** *
7486605 TTTAAATTTTTAATAAATTAGTACTATTTTTATTTCGAAA-AAGTTTTTATGACCAGAAACAATT
128 TTTAAA-TATTAATAAATTA-TATTA-TTTTATTTCGAAATAAGCTAGTATGA-AAGAAACAATT
* * *
7486669 GGTTTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTCTTCAAATAGTCATAACTA
189 GTTTTATGACAAAATAAAAGGTCATACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTA
** * * *
7486734 TTTGAACGTG-TTAAAAAACATATTTATTTTTTAAAAT-T-T-TACTTATTAATTTTTGAAATAT
253 TTTGAATTTGTTTAGAAAACAAATTTATTTTTT-AAATCTCTGTACTTATTAATTTTTGGAATAT
* * * *
7486795 TAATAAATTTA-AATTATTTTA-TTCGAAATAAGCTTGCATGAACAAAGCTAATTGTTTTATGAC
317 TAATAAA-TTAGTATTATTTTATTTTG-AATAAGCTTGTATGAACAAAAC-AATTGTTTTATGAC
* ** * * *
7486858 AAAACAAAAGGTCATAATGTTATGAAAATAGATAATTGGTCAGATAATCATAACTATTTGAACTT
379 -AAACAAAAGGTTATAAAATT-TG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
** * * **
7486923 ATTCGGTAAACATATTCTTTTTTTTAATTTTCTCACTCATTAATTTTTGGAATATTAATAAATTA
441 ATTCGGTAAACATA---TTTTTTAAAATTTTCTCACTCACTAATTTGTCAAATATTAATAAATTA
* * * ** * * *
7486988 GTATTATCTTACTTCAAATAAGCTTATATGAATTGAAACAAGTGTTTTATTAGAAAAGAAAATGT
503 GTATTATCTTAATGCAAATAAGCTTATATGAATAGAAACAAGTGTTTTACAACAAAACAAAAAGT
* * * * * ** * *
7487053 CATAATGATTTGAAATAGATAATTATTGAAATATTAATGACTATTTGAACTTGTTTGGTAAATAT
568 CATAATGATTTGAAATAAATAATTACTCAAATAGTAATAACTATTTGAACCAGTTTGATAAATAG
* * *
7487118 ATTTATTTTTTAAATCTTTTACTTATTAATTGTTAAAATATTAATTAATTAATATTATTTTAATT
633 ATTTATTGTCTAAATC---TACTTATTAATTGTTAAAATATTAATTAATTAATATTACTTTAATT
* * * *
7487183 CGAATATACTTGTATGAAT
695 CAAATAAACTTATATGAAC
* * * *
7487202 AGAAATAATTGTTTTATGACAAAACAAAAAATCATAA-CATATTGAAATAAATAATTGCTT-AAA
1 AGAAACAATTGTTGTATGACAAAACAAAAAGTCATAATGAT-TTGAAATAAATAATTG-TTCAAA
* * * * * *
7487265 TAGCCATAATGATTAGAACTTGTTTGGTAAACAGATTTA-TTTTTAAGTCTTTTACTTATTAATT
64 TAG-TATAATTATTTGAACTAGTTAGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
* *
7487329 GTCTT-AATATTAATAAATTTGTATTATTTTA-TTCGAAATAAGCTTAG-ATGAACAAAAACAAT
128 -T-TTAAATATTAATAAA-TTATATTATTTTATTTCGAAATAAGC-TAGTATGAA-AGAAACAAT
* * * * * * *
7487391 TCTTTTATTACAAAACAAAAGGTTATAGCTATTTCAAATAGATAATTATTCAAATAGTCCTAATT
188 TGTTTTATGACAAAATAAAAGGTCATA-CTATTTGAAATAGATAATTATTCAAATAGTCATAACT
* * * * *
7487456 ATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTGTA-TTATTAATTTTTGGATTAT
252 ATTTGAATTTGTTTAGAAAACAAATTTATTTTTTAAATCTCTGTACTTATTAATTTTTGGAATAT
* * *
7487520 TAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTAAAACAACTCTTTTATGACAA
317 TAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAC-AAAACAATTGTTTTATGACAA
* * * *
7487585 ATCAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATTGTCATGATTATTT-AA-TCTAG
381 A-CAAAAGGTTATAA-AATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TA-
* *
7487648 TGT-GGTAAACATA-TTTTTAAAATTTT-TTACTTACTAA-TTGTCAAATTATTAATAAATTAGT
442 T-TCGGTAAACATATTTTTTAAAATTTTCTCACTCACTAATTTGTCAAA-TATTAATAAATTAGT
* * * *
7487709 ATTATTTTAATGCAAATAAGCTTGTATGAGTAGAAACAATTGTTTTACAACAAAACAAAAAGTCA
505 ATTATCTTAATGCAAATAAGCTTATATGAATAGAAACAAGTGTTTTACAACAAAACAAAAAGTCA
* * *
7487774 TAATGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAACCAGTTTGATACATAGAT
570 TAATGATTTGAAATAAATAATTACTCAAATAGTAATAACTATTTGAACCAGTTTGATAAATAGAT
* * * *
7487839 TTGTTGTCTAAATC-ACTTATTAATTTTTGAAATATTAA-TAGATTAGTATTACTTT-ATTCCAA
635 TTATTGTCTAAATCTACTTATTAATTGTTAAAATATTAATTA-ATTAATATTACTTTAATT-CAA
7487901 ATAAACTTATATGAAC
698 ATAAACTTATATGAAC
* * *
7487917 A-AAACATTTGTTGTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTGTTCAAATA
1 AGAAACAATTGTTGTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* * * *
7487981 GTATAATTTTTTGAACTAGTTAGGTAAACAGAATTATTTTTTAAATCTCTTACTTATTAGTTTTT
66 GTATAATTATTTGAACTAGTTAGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT
* *
7488046 GAAATATTAATAAATTCATTTTATTTTATTTC-AAATAAGCTAGTATGAATTGAGAA-AATTGTT
131 -AAATATTAATAAATT-ATATTATTTTATTTCGAAATAAGCTAGTATGAA-AGA-AACAATTGTT
* * * * *
7488109 TTATGACAAGATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTT
192 TTATGACAAAATAAAAGGTCAT-ACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
* ** * * * *
7488174 GAATTGGTTCGGCAAACAAATTTATTTTTTAAATCCCTG-AGTTATTAATTTTTGGAATATTATT
256 GAATTTGTTTAGAAAACAAATTTATTTTTTAAATCTCTGTACTTATTAATTTTTGGAATATTAAT
* * *
7488238 AGATTAGTATTGTTTTATTTTGAATAAGCTTGTATGAACAAAAATAATTGTTTTATGACATAACA
321 AAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAC-AAAACAATTGTTTTATGACA-AACA
* * ** **
7488303 AAAGGTTATAATAATTTGAAATATAGAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAAT
384 AAAGGTTATAA-AATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGGT
* * * * * * *
7488368 AAATAGATTCATTTTTT-AAA---TCT--CTTATTAATTTTTGAAAGATTAATAAATTATTATTA
448 -AA-ACA-T-ATTTTTTAAAATTTTCTCACTCACTAATTTGTCAAATATTAATAAATTAGTATTA
* * *** * * * * * * ** * * *
7488427 TTTTATTTTGAATAATCATGTATG-ATAAAAAGCAATTGTTATATGACCAATC-AAAAGATAATA
509 TCTTAATGCAAATAAGCTTATATGAATAGAAA-CAAGTGTTTTACAACAAAACAAAAAG-TCATA
* ** * * * * *
7488490 ATGATTTGAAATAGATAATTGTTGAAAT-G-ACCATAATTATTTGAACTAATTTCG-CAAATAGA
572 ATGATTTGAAATAAATAATTACTCAAATAGTA--ATAACTATTTGAACCAGTTT-GATAAATAGA
* * * ** * * * *
7488552 TTCACTT-TTTAAATC-ACTTTATTAATTTTTGGAATATTAATAAATTAGA-ATTATTTTATTTT
634 TTTA-TTGTCTAAATCTAC-TTATTAATTGTTAAAATATTAATTAATTA-ATATTACTTTAATTC
* *
7488614 AAATAAGCTTGTATGAAC
696 AAATAAACTTATATGAAC
* * * * *
7488632 TGAAACAATTATTTTATGACAAAAC----A-TCATAATGATTTTAAATAGATAATTGTTCAAATA
1 AGAAACAATTGTTGTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGTTCAAATA
* * * * * * * * * * **
7488692 GTCATAACTATCTAAATTTGCTCA-ATAAACAAATTAATTTTTTCAAA-C---TCCTGCTT-A--
66 GT-ATAATTATTTGAACTAG-TTAGGTAAACAGATTTATTTTTT-AAATCTTTTACTTATTAATT
* * ** **
7488749 -TT-AA-A-T--T--CTT-T-TTA--TT-TTT-G--ATAAGTTTTTATGAATTAAAGCAATTGTT
128 TTTAAATATTAATAAATTATATTATTTTATTTCGAAATAAGCTAGTATGAAAGAAA-CAATTGTT
* * * * * * *
7488798 TTATGTCAAAACAAAAAGTCATAACGATTTTATAA-AAATAATTGA-TCAAATAGTCATAACTTT
192 TTATGACAAAATAAAAGGTCAT-ACTATTTGA-AATAGATAATT-ATTCAAATAGTCATAACTAT
* * * * * * *** *
7488861 TTAAACTTGTTTGGTAAACAAATTTATTTTTTCAAATCT-TTTGCTTATTAATTTTCCAAATGTT
254 TTGAATTTGTTTAGAAAACAAATTTATTTTTT-AAATCTCTGTACTTATTAATTTTTGGAATATT
* * * *** * * * *
7488925 CATAAATTTGGATTATTTTATTCCAAATAAGCTTATAAGACACGAAAA-AAATATTTTATGACTA
318 AATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGA-AC-AAAACAATTGTTTTATGAC-A
* * * * ** *
7488989 AACAAAAGGTT-TGAACTAA-TTGAAACAGATAATTATTCTAATTGTTTTTACTATTTGAA-TTG
380 AACAAAAGGTTAT-AA--AATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT-
* ** * ** * * * * * *
7489051 GTTTAGCAAGTATATTTAATTTTTAAA---TCT--CTTATTAATTTTTAAAATATTATTAAATTA
441 ATTCGGTAAACATA-TT--TTTTAAAATTTTCTCACTCACTAATTTGTCAAATATTAATAAATTA
* * * * * * * * **
7489111 GTATTATTTTTAA-CCGAATAGGCTTCTATGATTAAAAACAATTGTTTTATGACAAAACAAAAA-
503 GTATTA-TCTTAATGCAAATAAGCTTATATGAATAGAAACAAGTGTTTTACAACAAAACAAAAAG
** * * ** ** * * * ** *
7489174 TTTTAACGATTTGAGATTGATAATTGTTCAAATAGTCATAATTATTTAAACTGGTTTG-CAAATA
567 TCATAATGATTTGAAATAAATAATTACTCAAATAGTAATAACTATTTGAACCAGTTTGATAAATA
* * * * * * * * *
7489238 GATTTATTTTTTAAATCTGTTACCTATT-ATTTTTGAAATATTAATCAATTAGTATTATTTTTAT
632 GATTTATTGTCTAAATC---TACTTATTAATTGTTAAAATATTAATTAATTAATATTA-CTTTAA
* * * *
7489302 TTCGAATAAGCTTGTATGATAA
693 TTCAAATAAACTTATATGA-AC
* * * * *
7489324 AAAAACAATTGTAT-TATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAAT
1 AGAAACAATTGT-TGTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGTTCAAAT
* * * *
7489388 GGCCATAATTATTTTAACT-GATTTGGTAAACAGATTTATTTTTTAAA---TTT-CTTATTAATT
65 AG-TATAATTATTTGAACTAG-TTAGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT
** * ** * * *
7489448 TAGAAAATATTAATAAATTAGTATTATTTTA-TTCCATCTAAGCTTGTATTAATTGAAACAATTG
128 T-TTAAATATTAATAAATTA-TATTATTTTATTTCGAAATAAGCTAGTATGAA-AGAAACAATTG
* * * * * * * * *
7489512 TTTTATGACAAATTATAAGGTTATAAC-ATTTTTAAATAAACAATTGTTCAAATAATAATAACTA
190 TTTTATGACAAAATAAAAGGTCAT-ACTA-TTTGAAATAGATAATTATTCAAATAGTCATAACTA
* * * * *** *
7489576 TTTGAACTTGTTTGGCAAACAAATTTA-TTTTTAAATCTCT-TTCTTATTAATTTTCCAAATGTT
253 TTTGAATTTGTTTAGAAAACAAATTTATTTTTTAAATCTCTGTACTTATTAATTTTTGGAATATT
* * * * **
7489639 AATAAATTAGTATTAATTTATTCTGAATAAACTTTTATGAATTGAAACAATTGTTTTATGAC
318 AATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAA-CAAAACAATTGTTTTATGAC
7489701 TAAAAAATAG
Statistics
Matches: 1992, Mismatches: 377, Indels: 271
0.75 0.14 0.10
Matches are distributed among these distances:
686 1 0.00
687 7 0.00
688 23 0.01
689 148 0.07
690 204 0.10
691 55 0.03
692 24 0.01
693 1 0.00
694 3 0.00
695 1 0.00
696 9 0.00
697 63 0.03
699 1 0.00
701 1 0.00
702 3 0.00
703 3 0.00
704 1 0.00
705 2 0.00
706 1 0.00
708 2 0.00
709 5 0.00
710 1 0.00
711 36 0.02
712 30 0.02
713 62 0.03
714 517 0.26
715 131 0.07
716 116 0.06
717 5 0.00
718 9 0.00
719 145 0.07
720 11 0.01
722 8 0.00
723 89 0.04
724 104 0.05
725 151 0.08
726 19 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (713 bp):
AGAAACAATTGTTGTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGTTCAAATA
GTATAATTATTTGAACTAGTTAGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT
AAATATTAATAAATTATATTATTTTATTTCGAAATAAGCTAGTATGAAAGAAACAATTGTTTTAT
GACAAAATAAAAGGTCATACTATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAATT
TGTTTAGAAAACAAATTTATTTTTTAAATCTCTGTACTTATTAATTTTTGGAATATTAATAAATT
AGTATTATTTTATTTTGAATAAGCTTGTATGAACAAAACAATTGTTTTATGACAAACAAAAGGTT
ATAAAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACATAT
TTTTTAAAATTTTCTCACTCACTAATTTGTCAAATATTAATAAATTAGTATTATCTTAATGCAAA
TAAGCTTATATGAATAGAAACAAGTGTTTTACAACAAAACAAAAAGTCATAATGATTTGAAATAA
ATAATTACTCAAATAGTAATAACTATTTGAACCAGTTTGATAAATAGATTTATTGTCTAAATCTA
CTTATTAATTGTTAAAATATTAATTAATTAATATTACTTTAATTCAAATAAACTTATATGAAC
Found at i:7489109 original size:19 final size:19
Alignment explanation
Indices: 7489066--7489106 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7489056 GCAAGTATAT
* *
7489066 TTAATTTTTAAATCTCTTA
1 TTAATTTTTAAATATATTA
7489085 TTAATTTTTAAA-ATATTA
1 TTAATTTTTAAATATATTA
7489103 TTAA
1 TTAA
7489107 ATTAGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (19 bp):
TTAATTTTTAAATATATTA
Found at i:7489661 original size:180 final size:179
Alignment explanation
Indices: 7488782--7489705 Score: 616
Period size: 177 Copynumber: 5.2 Consensus size: 179
7488772 AGTTTTTATG
* * * * * *
7488782 AATT-AAAGCAATTGTTTTATGTCAAAACAAAAAGTCATAA-CGATTTTATAA-AAATAATTGAT
1 AATTGAAA-CAATTGTTTTATGACAAAATAAAAGGTCATAATC-ATTTGA-AATAAACAATTGTT
* *
7488844 CAAATAGTCATAACTT-TTTAAACTTGTTTGGTAAACAAATTTATTTTTTCAAATCTTTTGCTTA
63 CAAATAGTCATAA-TTATTTAAACTTGTTTGGCAAACAGATTTATTTTTT-AAATCTTTT-CTTA
* * * * * * * **
7488908 TTAATTTTCCAAATGTTCATAAATTTGGATTATTTTATTCCAAATAAGCTTATAAG
125 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATT-CGAATAAGCTTGTATT
* * * * * * * * * * * *
7488964 ACA-CGAAAAAAATATTTTATGACTAAACAAAAGGT-TTGAA-CTAATTGAAACAGATAATTATT
1 A-ATTGAAACAATTGTTTTATGACAAAATAAAAGGTCAT-AATC-ATTTGAAATAAACAATTGTT
* * ** * * * * ** * *
7489026 CTAATTGTTTTTACTATTTGAA-TTGGTTTAGCAAGTATATTTAATTTTTAAATC---TCTTATT
63 CAAATAGTCATAATTATTTAAACTT-GTTTGGCAAACAGATTTATTTTTTAAATCTTTTCTTATT
* * ** * *
7489087 AATTTTTAAAATATTATTAAATTAGTATTATTTTTAACCGAATAGGCTTCTA-T
127 AATTTTCAAAATATTAATAAATTAGTATTA-TTTTATTCGAATAAGCTTGTATT
* * * * ** * ** *
7489140 GATTAAAAACAATTGTTTTATGACAAAACAAAA-ATTTTAA-CGATTTGAGATTGATAATTGTTC
1 AATT-GAAACAATTGTTTTATGACAAAATAAAAGGTCATAATC-ATTTGAAATAAACAATTGTTC
* * * *
7489203 AAATAGTCATAATTATTTAAACTGGTTT-GCAAATAGATTTATTTTTTAAATCTGTTACCTATT-
64 AAATAGTCATAATTATTTAAACTTGTTTGGCAAACAGATTTATTTTTTAAATCT-TTTCTTATTA
** *
7489266 ATTTTTGAAATATTAATCAATTAGTATTATTTTTATTTCGAATAAGCTTGTATGAT
128 ATTTTCAAAATATTAATAAATTAGTATTA-TTTTA-TTCGAATAAGCTTGTAT--T
** * * * * *
7489322 AA-AAAAACAATTGTATTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTATTCAA
1 AATTGAAACAATTGTTTTATGACAAAATAAAAGGTCATAATCATTTGAAATAAACAATTGTTCAA
* * * *
7489386 ATGGCCATAATTATTTTAAC-TGATTTGGTAAACAGATTTATTTTTTAAA---TTTCTTATTAAT
66 ATAGTCATAATTATTTAAACTTG-TTTGGCAAACAGATTTATTTTTTAAATCTTTTCTTATTAAT
** * *
7489447 TTAGAAAATATTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTATT
130 TTTCAAAATATTAATAAATTAGTATTATTTTATTCGA-ATAAGCTTGTATT
* * * *
7489498 AATTGAAACAATTGTTTTATGACAAATTATAAGGTTATAA-CATTTTTAAATAAACAATTGTTCA
1 AATTGAAACAATTGTTTTATGACAAAATAAAAGGTCATAATCA-TTTGAAATAAACAATTGTTCA
* * * * *
7489562 AATAATAATAACTATTTGAACTTGTTTGGCAAACAAATTTA-TTTTTAAATCTCTTTCTTATTAA
65 AATAGTCATAATTATTTAAACTTGTTTGGCAAACAGATTTATTTTTTAAATCT-TTTCTTATTAA
* * * * * *
7489626 TTTTCCAAATGTTAATAAATTAGTATTAATTTATTCTGAATAAACTTTTATG
129 TTTTCAAAATATTAATAAATTAGTATTATTTTATTC-GAATAAGCTTGTATT
7489678 AATTGAAACAATTGTTTTATGACTAAAA
1 AATTGAAACAATTGTTTTATGAC-AAAA
7489706 AATAGTCAAA
Statistics
Matches: 579, Mismatches: 129, Indels: 69
0.75 0.17 0.09
Matches are distributed among these distances:
175 22 0.04
176 50 0.09
177 148 0.26
178 63 0.11
179 42 0.07
180 101 0.17
181 59 0.10
182 90 0.16
183 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (179 bp):
AATTGAAACAATTGTTTTATGACAAAATAAAAGGTCATAATCATTTGAAATAAACAATTGTTCAA
ATAGTCATAATTATTTAAACTTGTTTGGCAAACAGATTTATTTTTTAAATCTTTTCTTATTAATT
TTCAAAATATTAATAAATTAGTATTATTTTATTCGAATAAGCTTGTATT
Found at i:7489689 original size:357 final size:355
Alignment explanation
Indices: 7488782--7489727 Score: 876
Period size: 357 Copynumber: 2.6 Consensus size: 355
7488772 AGTTTTTATG
* * * * * *
7488782 AATT-AAAGCAATTGTTTTATGTCAAAACAAAAAGTCATAACGATTTTATAA-AAATAATTGATC
1 AATTAAAAACAATTGTTTTATGACAAAACAAAAA-TTATAACGATTTGA-AATAAACAATTGTTC
* *
7488845 AAATAGTCATAACTTTTTAAACTTGTTTGGTAAACAAATTTATTTTTTCAAATCTTTTGCTTATT
64 AAATAGTCATAACTATTTAAACTTGTTTGGCAAACAAATTTATTTTTT-AAATCTTTT-CTTATT
* * * ** * * *
7488910 AATTTTCCAAATGTTCATAAATTTGGATTATTTTATTCCAAATAAGCTTATAAGACACGAAAAAA
127 AATTTTCCAAATGTTAATAAATTAGTATTATTTTATTCTGAATAAGCTTATATGACAAGAAACAA
* * * * * * * *** *
7488975 ATATTTTATGACTAAACAAAAGGT-TTGAACT-AATTGAAACAGATAATTATTCTAATTGTTTTT
192 TTGTTTTATGAC-AAAAAAAAGGTCAT-AA-TGATTTGAAACAGATAATTATTCAAATGGCCATA
* * ** * **
7489038 ACTATTTGAATTGGTTTAGCAAGTATATTTAATTTTTAAATCTCTTATTAATTTTTAAAATATTA
254 ACTATTTGAACTGATTTAGCAAACAGATTTAATTTTTAAATCTCTTATTAATTTAGAAAATATTA
* *
7489103 TTAAATTAGTATTATTTTTAACCGAATAGGCTTCTAT
319 ATAAATTAGTATTATTTTTAACCGAATAAGCTTCTAT
* * * ** *
7489140 GATTAAAAACAATTGTTTTATGACAAAACAAAAATTTTAACGATTTGAGATTGATAATTGTTCAA
1 AATTAAAAACAATTGTTTTATGACAAAACAAAAATTATAACGATTTGAAATAAACAATTGTTCAA
* * * * * *
7489205 ATAGTCATAATTATTTAAACTGGTTT-GCAAATAGATTTATTTTTTAAATCTGTTACCTATT-AT
66 ATAGTCATAACTATTTAAACTTGTTTGGCAAACAAATTTATTTTTTAAATCT-TTTCTTATTAAT
** * * * * *
7489268 TTTTGAAATATTAATCAATTAGTATTATTTTTATT-TCGAATAAGCTTGTATGATAAAAAAACAA
130 TTTCCAAATGTTAATAAATTAGTATTA-TTTTATTCT-GAATAAGCTTATATGA-CAAGAAACAA
* * *
7489332 TTGTATTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATGGCCATAAT
192 TTGTTTTATGACAAAA-AAAAGGTCATAATGATTTGAAACAGATAATTATTCAAATGGCCATAAC
* * * * *
7489397 TATTTTAACTGATTTGGTAAACAGATTTATTTTTTAAATTTCTTATTAATTTAGAAAATATTAAT
256 TATTTGAACTGATTTAGCAAACAGATTTAATTTTTAAATCTCTTATTAATTTAGAAAATATTAAT
* * *
7489462 AAATTAGTATTA-TTTTATTCC-ATCTAAGCTTGTATT
321 AAATTAGTATTATTTTTA-ACCGA-ATAAGCTTCTA-T
* ** ** *
7489498 AATT-GAAACAATTGTTTTATGACAAATTATAAGGTTATAAC-ATTTTTAAATAAACAATTGTTC
1 AATTAAAAACAATTGTTTTATGACAAAACA-AAAATTATAACGA-TTTGAAATAAACAATTGTTC
* * *
7489561 AAATAATAATAACTATTTGAACTTGTTTGGCAAACAAATTTA-TTTTTAAATCTCTTTCTTATTA
64 AAATAGTCATAACTATTTAAACTTGTTTGGCAAACAAATTTATTTTTTAAATCT-TTTCTTATTA
* * * *
7489625 ATTTTCCAAATGTTAATAAATTAGTATTAATTTATTCTGAATAAACTTTTATGA-ATTGAAACAA
128 ATTTTCCAAATGTTAATAAATTAGTATTATTTTATTCTGAATAAGCTTATATGACA-AGAAACAA
* * *
7489689 TTGTTTTATGACTAAAAAATA-GTCAAAACGATTTGAAAC
192 TTGTTTTATGAC-AAAAAAAAGGTCATAATGATTTGAAAC
7489728 CTGAAACTAA
Statistics
Matches: 469, Mismatches: 100, Indels: 40
0.77 0.16 0.07
Matches are distributed among these distances:
355 22 0.05
356 57 0.12
357 185 0.39
358 141 0.30
359 64 0.14
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.42
Consensus pattern (355 bp):
AATTAAAAACAATTGTTTTATGACAAAACAAAAATTATAACGATTTGAAATAAACAATTGTTCAA
ATAGTCATAACTATTTAAACTTGTTTGGCAAACAAATTTATTTTTTAAATCTTTTCTTATTAATT
TTCCAAATGTTAATAAATTAGTATTATTTTATTCTGAATAAGCTTATATGACAAGAAACAATTGT
TTTATGACAAAAAAAAGGTCATAATGATTTGAAACAGATAATTATTCAAATGGCCATAACTATTT
GAACTGATTTAGCAAACAGATTTAATTTTTAAATCTCTTATTAATTTAGAAAATATTAATAAATT
AGTATTATTTTTAACCGAATAAGCTTCTAT
Found at i:7490288 original size:21 final size:21
Alignment explanation
Indices: 7490264--7490331 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
7490254 TAATGAAATT
*
7490264 AATTATATTAAATATATTATA
1 AATTATAATAAATATATTATA
*
7490285 AATTATAGTAAATA-ATT-TA
1 AATTATAATAAATATATTATA
*
7490304 TATT-TAATAAA-ATATTAATA
1 AATTATAATAAATATATT-ATA
*
7490324 AAATATAA
1 AATTATAA
7490332 CTATTATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
17 1 0.03
18 9 0.24
19 5 0.13
20 7 0.18
21 16 0.42
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (21 bp):
AATTATAATAAATATATTATA
Found at i:7490923 original size:6 final size:6
Alignment explanation
Indices: 7490914--7490980 Score: 57
Period size: 6 Copynumber: 10.8 Consensus size: 6
7490904 ATTTTTAAAG
* *
7490914 TTATAA TTATTAA TTTTAA TTAGTTA TTAATAA TTATAA TTATAA TTAATAA
1 TTATAA TTA-TAA TTATAA TTA-TAA TT-ATAA TTATAA TTATAA TT-ATAA
*
7490966 GTATAA --ATAA TTATA
1 TTATAA TTATAA TTATA
7490981 TAATTTTAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
4 4 0.08
6 27 0.54
7 18 0.36
8 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (6 bp):
TTATAA
Found at i:7490947 original size:20 final size:19
Alignment explanation
Indices: 7490914--7490985 Score: 76
Period size: 19 Copynumber: 3.8 Consensus size: 19
7490904 ATTTTTAAAG
* *
7490914 TTATAATTATTAATTTTAA
1 TTATAATTAATAATTATAA
*
7490933 TTAGTTATTAATAATTATAA
1 TTA-TAATTAATAATTATAA
*
7490953 TTATAATTAATAAGTATAA
1 TTATAATTAATAATTATAA
7490972 --ATAATTATATAATT
1 TTATAATTA-ATAATT
7490986 TTAAATAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
17 7 0.16
18 5 0.11
19 17 0.38
20 16 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TTATAATTAATAATTATAA
Found at i:7490965 original size:13 final size:13
Alignment explanation
Indices: 7490914--7490985 Score: 58
Period size: 13 Copynumber: 5.6 Consensus size: 13
7490904 ATTTTTAAAG
*
7490914 TTATAATTATTAA
1 TTATAATTAATAA
* * *
7490927 TTTTAATTAGTTA
1 TTATAATTAATAA
7490940 TTAATAATT-ATAA
1 TT-ATAATTAATAA
7490953 TTATAATTAATAA
1 TTATAATTAATAA
* * *
7490966 GTATAAATAATTA
1 TTATAATTAATAA
7490979 -TATAATT
1 TTATAATT
7490986 TTAAATAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
12 12 0.26
13 30 0.64
14 5 0.11
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
TTATAATTAATAA
Found at i:7491012 original size:16 final size:16
Alignment explanation
Indices: 7490974--7491023 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
7490964 AAGTATAAAT
* *
7490974 AATTATATAATT-TTA
1 AATTATTTAATTACTA
*
7490989 AATAATTTAATTACTA
1 AATTATTTAATTACTA
7491005 AATTATTT-ATTAACTA
1 AATTATTTAATT-ACTA
7491021 AAT
1 AAT
7491024 AAATTTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 13 0.45
16 16 0.55
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTATTTAATTACTA
Found at i:7491822 original size:23 final size:22
Alignment explanation
Indices: 7491792--7491858 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 22
7491782 ACACAATTTG
*
7491792 TATT-ATTATAAATTAAT-ATT
1 TATTAATTATAAATAAATAATT
7491812 ATATTTAATTATAAATAAATAATT
1 -TA-TTAATTATAAATAAATAATT
*
7491836 TATTAATTAT-ATTAAAT-ATT
1 TATTAATTATAAATAAATAATT
7491856 TAT
1 TAT
7491859 AATGAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.15
21 8 0.20
22 10 0.24
23 14 0.34
24 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAATTATAAATAAATAATT
Found at i:7492100 original size:19 final size:18
Alignment explanation
Indices: 7492064--7492121 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
7492054 CTAATTTACT
* *
7492064 AAATTATTTTGTTTAATTA
1 AAATTA-TTTATTAAATTA
7492083 AAATTATTATATTAAATTA
1 AAATTATT-TATTAAATTA
*
7492102 AATATTAATTATTAAATTA
1 AA-ATTATTTATTAAATTA
7492121 A
1 A
7492122 CTAATATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.06
19 27 0.79
20 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
AAATTATTTATTAAATTA
Found at i:7492134 original size:19 final size:19
Alignment explanation
Indices: 7492078--7492135 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
7492068 TATTTTGTTT
*
7492078 AATTAAA-ATTATTATATTA
1 AATTAAATAATATTA-ATTA
*
7492097 AATTAAATATTAATT-ATTA
1 AATTAAATAAT-ATTAATTA
*
7492116 AATTAACTAATATTAATTA
1 AATTAAATAATATTAATTA
7492135 A
1 A
7492136 TAACAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 3 0.09
19 25 0.74
20 3 0.09
21 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTAAATAATATTAATTA
Found at i:7493363 original size:177 final size:176
Alignment explanation
Indices: 7492774--7493422 Score: 559
Period size: 176 Copynumber: 3.6 Consensus size: 176
7492764 TAATTGAAAC
* *** *
7492774 AATTGTT-TAAATAGTCATATA-TATTTGAAATTGTTCAATAAACAGATTTATTTTTTTAAATCT
1 AATTGTTCT-AATAGTCATA-ACTATTTGAACTTGTTTGGTAAATAGATTTA-TTTTTTAAATCT
* *** * * * ***
7492837 CTTGCTTTAATTTTTTGAATGTTAATAAAT-TAGTATTATTTTAGTCCAAATAAGCTTGTATGAA
63 CTT--ATTAATTTTCAAAATATTAAAAAATATAG--TTATTTTATTTTGAATAAGCTTGTATGAA
* ** *
7492901 CTA-AAATAATTGTTTTATGATTAAACAAAAGGAT-AGAATGATTTGAAATAGAT
124 C-AGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAATGATTTGAAATAGAT
* * * * * *
7492954 AATTATTCTGATAGTCTTAACTATTTGAAATAGTTCGGCTAACAT--ATTTATTTTTTAAATCTC
1 AATTGTTCTAATAGTCATAACTATTTGAACTTGTTTGG-TAA-ATAGATTTATTTTTTAAATCTC
** * *
7493017 TTATTAATTTT-AAAATATTATTAAAT-TAGTATCATTTTAATCTGAATAAGCTTGTATGAA-AG
64 TTATTAATTTTCAAAATATTAAAAAATATAGT-T-ATTTTATTTTGAATAAGCTTGTATGAACA-
* ** * * *
7493079 GAAACAATTGTTGTATGACAAAA-TGAAGATCATTATGATTTGAGATAGAT
126 GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGAT
* * * *
7493129 AACTGTTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAATAGATTTAGTTTTTAAATCTCTT
1 AATTGTTCTAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTCTT
* *
7493194 ATTAATTTTCAAAATATTAAAAAATCAAAGTTATTTTATTTTGAATAA-TTCTGTATGAACAGAA
66 ATTAATTTTCAAAATATTAAAAAAT-ATAGTTATTTTATTTTGAATAAGCT-TGTATGAACAGAA
* **
7493258 ACAATTTTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGAT
129 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGAT
* * *
7493306 AATTGTTCTAATGGACATGACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTCCC
1 AATTGTTCTAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCT---
* * *
7493371 ACCTATTAATTTGCAAAATATTAATAAAATAGTA-TTGTTTTATTTTGAATAA
63 -CTTATTAATTTTCAAAATATTAA-AAAATA-TAGTTATTTTATTTTGAATAA
7493423 ACTATATATG
Statistics
Matches: 385, Mismatches: 61, Indels: 45
0.78 0.12 0.09
Matches are distributed among these distances:
173 2 0.01
174 6 0.02
175 78 0.20
176 112 0.29
177 85 0.22
178 3 0.01
179 16 0.04
180 33 0.09
181 43 0.11
182 7 0.02
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (176 bp):
AATTGTTCTAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTCTT
ATTAATTTTCAAAATATTAAAAAATATAGTTATTTTATTTTGAATAAGCTTGTATGAACAGAAAC
AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGAT
Found at i:7494382 original size:18 final size:16
Alignment explanation
Indices: 7494359--7494412 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 16
7494349 TTAATTAGTA
7494359 AATTAATAATATATAATT
1 AATTAATAAT-T-TAATT
7494377 AATTAAT-ATTTAATTT
1 AATTAATAATTTAA-TT
7494393 AATATAATAATTTTAATT
1 AAT-TAATAA-TTTAATT
7494411 AA
1 AA
7494413 ACAAAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
15 3 0.09
16 6 0.19
17 6 0.19
18 12 0.38
19 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAATAATTTAATT
Found at i:7494383 original size:15 final size:16
Alignment explanation
Indices: 7494326--7494385 Score: 63
Period size: 15 Copynumber: 3.8 Consensus size: 16
7494316 AATTATTGTT
7494326 ATTAATTAATATTAGTTA
1 ATTAATTAATA-TAG-TA
*
7494344 ATTTATTAAT-TAGTAA
1 ATTAATTAATATAGT-A
7494360 ATTAA-TAATATA-TA
1 ATTAATTAATATAGTA
7494374 ATTAATTAATAT
1 ATTAATTAATAT
7494386 TTAATTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 6 0.16
15 12 0.32
16 10 0.27
18 9 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTAATTAATATAGTA
Found at i:7494390 original size:15 final size:15
Alignment explanation
Indices: 7494327--7494412 Score: 59
Period size: 14 Copynumber: 5.5 Consensus size: 15
7494317 ATTATTGTTA
* *
7494327 TTAATTAA-TATTAG
1 TTAATTAATTAATAT
* *
7494341 TTAATTTATTAATTAG
1 TTAATTAATTAA-TAT
*
7494357 TAAATTAA-TAATAT
1 TTAATTAATTAATAT
*
7494371 ATAATTAATTAATAT
1 TTAATTAATTAATAT
7494386 TTAATTTAATATAATAATT
1 TTAA-TTAAT-TAAT-A-T
7494405 TTAATTAA
1 TTAATTAA
7494413 ACAAAATAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
14 15 0.26
15 14 0.25
16 14 0.25
17 4 0.07
18 5 0.09
19 5 0.09
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
TTAATTAATTAATAT
Found at i:7494425 original size:18 final size:18
Alignment explanation
Indices: 7494384--7494427 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
7494374 ATTAATTAAT
* * *
7494384 ATTTAATTTAATATAATA
1 ATTTAATTAAACAAAATA
7494402 ATTTTAATTAAACAAAATA
1 A-TTTAATTAAACAAAATA
7494421 ATTTAAT
1 ATTTAAT
7494428 AAATTTGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTAATTAAACAAAATA
Found at i:7494689 original size:23 final size:22
Alignment explanation
Indices: 7494644--7494698 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
7494634 AAATATTTAA
*
7494644 TATAATTAATAAATTATTTATT
1 TATAATTAATAAATTATTAATT
7494666 TATAATTAAGTATAA-TATTAATT
1 TATAATTAA-TA-AATTATTAATT
7494689 TATAA-TAATA
1 TATAATTAATA
7494699 CAAATGTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 2 0.07
22 12 0.40
23 14 0.47
24 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TATAATTAATAAATTATTAATT
Found at i:7494791 original size:27 final size:26
Alignment explanation
Indices: 7494741--7494803 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
7494731 ATTGTATATT
* * *
7494741 TTAATAAATTTATTACAATTAAATTAG
1 TTAATAATTTTATAACAATCAAA-TAG
*
7494768 TTAATAATTTTATAATAATCAAATAG
1 TTAATAATTTTATAACAATCAAATAG
7494794 TATAATAATT
1 T-TAATAATT
7494804 AAATGTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (26 bp):
TTAATAATTTTATAACAATCAAATAG
Found at i:7494799 original size:16 final size:15
Alignment explanation
Indices: 7494778--7494812 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7494768 TTAATAATTT
7494778 TATAATAATCAAATAG
1 TATAATAATCAAAT-G
*
7494794 TATAATAATTAAATG
1 TATAATAATCAAATG
7494809 TATA
1 TATA
7494813 TGTGAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (15 bp):
TATAATAATCAAATG
Found at i:7495013 original size:22 final size:24
Alignment explanation
Indices: 7494963--7495015 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
7494953 GATATGAATT
*
7494963 ATTATAAATTTATATAATAAATACT
1 ATTAT-AATTTATATAATAAATACA
*
7494988 ATTATAATTTATAT-ATAATTA-A
1 ATTATAATTTATATAATAAATACA
7495010 ATTATA
1 ATTATA
7495016 TATAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 6 0.23
23 6 0.23
24 9 0.35
25 5 0.19
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTATAATTTATATAATAAATACA
Found at i:7495444 original size:29 final size:26
Alignment explanation
Indices: 7495397--7495454 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 26
7495387 ATTAGTTATT
7495397 TATTATAATTTTATAAATAA-ATAATA
1 TATTATAATTTTATAAATAATATAA-A
*
7495423 TATTATACTATTTATATGAATAATATAAA
1 TATTATA--ATTT-TATAAATAATATAAA
7495452 TAT
1 TAT
7495455 GAAAAATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 7 0.26
28 4 0.15
29 12 0.44
30 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
TATTATAATTTTATAAATAATATAAA
Found at i:7495600 original size:18 final size:17
Alignment explanation
Indices: 7495579--7495635 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
7495569 TAGTTACAAC
7495579 TAATTATAATATAATTAT
1 TAATTATAATATAA-TAT
*
7495597 TAATAATAACTATAA-AT
1 TAATTATAA-TATAATAT
*
7495614 TAATTATATTATAATAAT
1 TAATTATAATATAAT-AT
7495632 TAAT
1 TAAT
7495636 AAACTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 5 0.15
17 9 0.27
18 14 0.42
19 5 0.15
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTATAATATAATAT
Found at i:7495646 original size:35 final size:34
Alignment explanation
Indices: 7495553--7495665 Score: 85
Period size: 35 Copynumber: 3.3 Consensus size: 34
7495543 TTTAAATTCT
* *
7495553 TAATAATTTAATAAATTAGT-TACAACTAATTATAATA
1 TAATAA-TTAATAAA-TACTATA-AA-TAATTATATTA
*
7495590 TAATTATTAAT-AATAACTATAAATTAATTATATTA
1 TAATAATTAATAAAT-ACTATAAA-TAATTATATTA
7495625 TAATAATTAAT-AA-ACTATATAATAATT-TATTA
1 TAATAATTAATAAATACTATA-AATAATTATATTA
*
7495657 TTAT-ATTAA
1 TAATAATTAA
7495666 AAAAATAATC
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
31 5 0.07
32 8 0.12
33 11 0.16
34 3 0.04
35 28 0.42
36 7 0.10
37 5 0.07
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (34 bp):
TAATAATTAATAAATACTATAAATAATTATATTA
Found at i:7496151 original size:24 final size:24
Alignment explanation
Indices: 7496124--7496179 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
7496114 TAAAACAGTC
*
7496124 TAATTTAATACATATTGTTAATT-A-
1 TAATTTAATA-ATA-TATTAATTAAT
7496148 TAATTT-ATAATATATTAATTAAT
1 TAATTTAATAATATATTAATTAAT
7496171 TAATTTAAT
1 TAATTTAAT
7496180 TAATTTATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 7 0.25
22 4 0.14
23 9 0.32
24 8 0.29
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TAATTTAATAATATATTAATTAAT
Found at i:7496609 original size:16 final size:17
Alignment explanation
Indices: 7496577--7496609 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7496567 TTTTTAGTCA
7496577 AATAATTATAACTATTTG
1 AATAATTAT-ACTATTTG
7496595 AATAATTAT-CTATTT
1 AATAATTATACTATTT
7496610 TAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:7496627 original size:17 final size:17
Alignment explanation
Indices: 7496576--7496627 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
7496566 TTTTTTAGTC
*
7496576 AAATAATTATAACTATTT
1 AAATAATTATTACT-TTT
*
7496594 GAATAATTATCTA-TTTT
1 AAATAATTAT-TACTTTT
*
7496611 AAATCATTATTACTTTT
1 AAATAATTATTACTTTT
7496628 TGTTTTGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 2 0.07
17 15 0.54
18 10 0.36
19 1 0.04
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (17 bp):
AAATAATTATTACTTTT
Found at i:7497512 original size:21 final size:23
Alignment explanation
Indices: 7497478--7497523 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
7497468 GATAATATCA
7497478 ATTTAATATTCAAATATT-AATT
1 ATTTAATATTCAAATATTAAATT
7497500 ATTTAAT-TTCAAATATTAAATT
1 ATTTAATATTCAAATATTAAATT
7497522 AT
1 AT
7497524 AAATAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
ATTTAATATTCAAATATTAAATT
Found at i:7497602 original size:11 final size:11
Alignment explanation
Indices: 7497588--7497616 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
7497578 TAACATAACT
7497588 TAATTATAATA
1 TAATTATAATA
7497599 TAATTATAATA
1 TAATTATAATA
7497610 TAATTAT
1 TAATTAT
7497617 TTAATGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATTATAATA
Found at i:7498042 original size:21 final size:21
Alignment explanation
Indices: 7497987--7498049 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
7497977 AATATTTAAT
* *
7497987 TTATAATA-AACAATAATTTTA
1 TTATATTATAACAAT-AGTTTA
*
7498008 TTATATTAT-GCAATA-TTTA
1 TTATATTATAACAATAGTTTA
7498027 TTATACTTATAACAATAGTTTA
1 TTATA-TTATAACAATAGTTTA
7498049 T
1 T
7498050 ATAATAAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
19 9 0.26
20 5 0.14
21 16 0.46
22 5 0.14
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (21 bp):
TTATATTATAACAATAGTTTA
Found at i:7498093 original size:13 final size:13
Alignment explanation
Indices: 7498075--7498099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7498065 ATACTTTATT
7498075 AATAATTAGATTA
1 AATAATTAGATTA
7498088 AATAATTAGATT
1 AATAATTAGATT
7498100 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:7498257 original size:17 final size:17
Alignment explanation
Indices: 7498235--7498287 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
7498225 ATATTTATAT
7498235 TATATTTTAATTAATTA
1 TATATTTTAATTAATTA
*
7498252 TATATTATAATTAAATTA
1 TATATTTTAATT-AATTA
* * *
7498270 GAT-TATTATTTAATTA
1 TATATTTTAATTAATTA
7498286 TA
1 TA
7498288 ACAAATATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TATATTTTAATTAATTA
Found at i:7498258 original size:22 final size:23
Alignment explanation
Indices: 7498230--7498285 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
7498220 TTTAAATATT
* *
7498230 TATATTATATTTTAATTA-ATTA
1 TATATTATAATTAAATTAGATTA
7498252 TATATTATAATTAAATTAGATTA
1 TATATTATAATTAAATTAGATTA
7498275 T-TATT-TAATTA
1 TATATTATAATTA
7498286 TAACAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TATATTATAATTAAATTAGATTA
Found at i:7498335 original size:31 final size:29
Alignment explanation
Indices: 7498297--7498375 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 29
7498287 AACAAATATT
*
7498297 TTAATTTTAAATTAATAAGTAAAAATTTTAA
1 TTAATTTTAAATTAATAA--AAAAATTTGAA
* *
7498328 TTAATTTT-AATTATATAAATAAATTTGAT
1 TTAATTTTAAATTA-ATAAAAAAATTTGAA
7498357 TTAATATTTAAAATTAATA
1 TTAAT-TTT-AAATTAATA
7498376 TATATTTTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
29 13 0.32
30 8 0.20
31 15 0.37
32 5 0.12
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (29 bp):
TTAATTTTAAATTAATAAAAAAATTTGAA
Found at i:7498417 original size:85 final size:84
Alignment explanation
Indices: 7498290--7498464 Score: 189
Period size: 85 Copynumber: 2.1 Consensus size: 84
7498280 TAATTATAAC
* * **
7498290 AAATATTTTAATTTTAAATTAATAAGTAAAAATTTTAATTAATTTTAATTATATAAATAAATTTG
1 AAATATTTTAATATTAAATTAATAAGTAAAAATTATAATTAATAATAATTAT-TAAA-AAATTT-
7498355 ATTT-AATA-TTT-AAAATTAAT
63 -TTTAAATATTTTGAAAATTAAT
* * * *
7498375 ATATATTTTAGTATTAAATATAACT-AGTAAAAA-TATATTTAATAATAATTATTAAAATATTTT
1 AAATATTTTAATATTAAAT-TAA-TAAGTAAAAATTATAATTAATAATAATTATTAAAAAATTTT
7498438 TTAAATATTTTGAAAATTAAT
64 TTAAATATTTTGAAAATTAAT
7498459 AAATAT
1 AAATAT
7498465 AATTATTTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
81 3 0.04
82 4 0.05
83 8 0.11
84 18 0.24
85 31 0.41
86 11 0.14
87 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.47
Consensus pattern (84 bp):
AAATATTTTAATATTAAATTAATAAGTAAAAATTATAATTAATAATAATTATTAAAAAATTTTTT
AAATATTTTGAAAATTAAT
Found at i:7499527 original size:19 final size:19
Alignment explanation
Indices: 7499503--7499541 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7499493 TAAATTAATT
7499503 AATAT-ATAAAAATAATTTA
1 AATATAATAAAAAT-ATTTA
*
7499522 AATATAATATAAATATTTA
1 AATATAATAAAAATATTTA
7499541 A
1 A
7499542 TTGAGAAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AATATAATAAAAATATTTA
Found at i:7499737 original size:15 final size:14
Alignment explanation
Indices: 7499719--7499803 Score: 50
Period size: 15 Copynumber: 6.0 Consensus size: 14
7499709 AACCTATATA
7499719 TAATAATAATTATGT
1 TAATAATAATTAT-T
* *
7499734 TAATATTTATTATT
1 TAATAATAATTATT
*
7499748 T-ATATATAATTA-A
1 TAATA-ATAATTATT
* *
7499761 TAATATTATTTATT
1 TAATAATAATTATT
* *
7499775 TAATTATAAATA-T
1 TAATAATAATTATT
7499788 TACTATAATAATTATT
1 TA--ATAATAATTATT
7499804 AATTAATTAT
Statistics
Matches: 50, Mismatches: 14, Indels: 11
0.67 0.19 0.15
Matches are distributed among these distances:
13 12 0.24
14 18 0.36
15 19 0.38
16 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (14 bp):
TAATAATAATTATT
Found at i:7499780 original size:21 final size:23
Alignment explanation
Indices: 7499741--7499802 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 23
7499731 TGTTAATATT
7499741 TATTATTTATATATAATTA-ATAA
1 TATTATTTATATATAATTATA-AA
7499764 TATTATTTAT-T-TAATTATAAA
1 TATTATTTATATATAATTATAAA
*
7499785 TATTA-CTATA-ATAATTAT
1 TATTATTTATATATAATTAT
7499803 TAATTAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 3 0.09
21 20 0.57
22 2 0.06
23 10 0.29
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTATTTATATATAATTATAAA
Found at i:7499810 original size:32 final size:33
Alignment explanation
Indices: 7499751--7499831 Score: 96
Period size: 32 Copynumber: 2.5 Consensus size: 33
7499741 TATTATTTAT
* *
7499751 ATATAATTAATAAT-ATTATTTATTTAATTATAA
1 ATATACTT-ATAATAATTATTTAATTAATTATAA
7499784 ATATTAC-TATAATAATTA-TTAATTAATTATAA
1 ATA-TACTTATAATAATTATTTAATTAATTATAA
*
7499816 GTATACTTATAATAAT
1 ATATACTTATAATAAT
7499832 ATAAAAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
31 3 0.07
32 29 0.69
33 8 0.19
34 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (33 bp):
ATATACTTATAATAATTATTTAATTAATTATAA
Found at i:7499988 original size:16 final size:17
Alignment explanation
Indices: 7499959--7500066 Score: 58
Period size: 17 Copynumber: 6.1 Consensus size: 17
7499949 AATATTGTAA
7499959 TATTATATAAATTAAAT
1 TATTATATAAATTAAAT
* *
7499976 TATT-TATACATTATAT
1 TATTATATAAATTAAAT
* * *
7499992 TAGTATAAAAATTATAT
1 TATTATATAAATTAAAT
* * *
7500009 TATACAAATAATATTTAATT
1 TAT-TATATAA-A-TTAAAT
7500029 TATTATAATAAAATTATAAT
1 TATTAT-AT-AAATTA-AAT
*
7500049 TA-TAGTATTAATTAAAT
1 TATTA-TATAAATTAAAT
7500066 T
1 T
7500067 TACCAAACTT
Statistics
Matches: 68, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
16 13 0.19
17 20 0.29
18 9 0.13
19 9 0.13
20 15 0.22
21 2 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TATTATATAAATTAAAT
Found at i:7500899 original size:16 final size:16
Alignment explanation
Indices: 7500875--7500922 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
7500865 TTATCTTTGA
7500875 TTAAT-TTTTACAATT
1 TTAATATTTTACAATT
*
7500890 TTAATATTTTAAATATT
1 TTAATATTTTACA-ATT
7500907 TTAA-ATTTTAACAATT
1 TTAATATTTT-ACAATT
7500923 GAAGATTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 5 0.18
16 14 0.50
17 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (16 bp):
TTAATATTTTACAATT
Found at i:7501070 original size:13 final size:12
Alignment explanation
Indices: 7501046--7501086 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
7501036 AATATAATCA
7501046 ATTTATTATTAAT
1 ATTTA-TATTAAT
7501059 ATATTATATTAAT
1 AT-TTATATTAAT
*
7501072 ATTTATAATAAT
1 ATTTATATTAAT
7501084 ATT
1 ATT
7501087 ATCCAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 12 0.46
13 11 0.42
14 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTATATTAAT
Found at i:7502457 original size:15 final size:16
Alignment explanation
Indices: 7502437--7502503 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
7502427 TGTCCAATTA
7502437 AATTATATAATA-AAT
1 AATTATATAATATAAT
7502452 AATTAT-T-ATATAAT
1 AATTATATAATATAAT
*
7502466 ATATTATATACA-ATTAT
1 A-ATTATATA-ATATAAT
* *
7502483 AATTACATATTATAAT
1 AATTATATAATATAAT
7502499 AATTA
1 AATTA
7502504 ATATGATTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 5 0.12
15 11 0.26
16 17 0.40
17 5 0.12
18 1 0.02
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTATATAATATAAT
Found at i:7502530 original size:14 final size:15
Alignment explanation
Indices: 7502489--7502554 Score: 54
Period size: 14 Copynumber: 4.7 Consensus size: 15
7502479 TTATAATTAC
7502489 ATATTA-TAATAATTA
1 ATATTATTAATAA-TA
* *
7502504 ATATGATTCATAA-A
1 ATATTATTAATAATA
7502518 ATATTATTAATAAT-
1 ATATTATTAATAATA
7502532 AT-TTAATT-ATAATA
1 ATATT-ATTAATAATA
7502546 AT-TTATTAA
1 ATATTATTAA
7502555 ATTATTACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 10 0.24
14 22 0.52
15 5 0.12
16 5 0.12
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
ATATTATTAATAATA
Found at i:7503150 original size:35 final size:37
Alignment explanation
Indices: 7503106--7503181 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
7503096 AATTTATTAT
*
7503106 TAATCAAATT-ATAAT-TATATTATA-TATAATATAAA
1 TAATCAAATTAATAATATATATTAAATTAT-ATATAAA
* *
7503141 TAATTAAATTAATAATATTTATTAAATTATATATAAA
1 TAATCAAATTAATAATATATATTAAATTATATATAAA
7503178 TAAT
1 TAAT
7503182 ATCTTTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 9 0.26
36 5 0.14
37 18 0.51
38 3 0.09
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (37 bp):
TAATCAAATTAATAATATATATTAAATTATATATAAA
Found at i:7503354 original size:14 final size:14
Alignment explanation
Indices: 7503328--7503360 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7503318 ATAATTGTTT
*
7503328 ATTA-TATTTAATA
1 ATTATTATTAAATA
7503341 ATTATTATTAAATA
1 ATTATTATTAAATA
7503355 ATTATT
1 ATTATT
7503361 TTTATTTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTATTATTAAATA
Found at i:7503556 original size:13 final size:13
Alignment explanation
Indices: 7503538--7503562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7503528 TAATTTATTT
7503538 AATAATTAGATTA
1 AATAATTAGATTA
7503551 AATAATTAGATT
1 AATAATTAGATT
7503563 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:7503664 original size:17 final size:17
Alignment explanation
Indices: 7503642--7503694 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
7503632 ATATTTGTAT
7503642 TATATTTTAATTAATTA
1 TATATTTTAATTAATTA
*
7503659 TATATTATAATTAAATTA
1 TATATTTTAATT-AATTA
* * *
7503677 GAT-TATTATTTAATTA
1 TATATTTTAATTAATTA
7503693 TA
1 TA
7503695 ACAATTATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TATATTTTAATTAATTA
Found at i:7503665 original size:22 final size:22
Alignment explanation
Indices: 7503639--7503692 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
7503629 TAAATATTTG
* *
7503639 TATTATATTTTAATTA-ATTAT
1 TATTATAATTAAATTAGATTAT
7503660 ATATTATAATTAAATTAGATTAT
1 -TATTATAATTAAATTAGATTAT
7503683 TATT-TAATTA
1 TATTATAATTA
7503693 TAACAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 6 0.21
22 18 0.62
23 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TATTATAATTAAATTAGATTAT
Found at i:7504494 original size:92 final size:92
Alignment explanation
Indices: 7504330--7504499 Score: 207
Period size: 92 Copynumber: 1.8 Consensus size: 92
7504320 TGAACAGAGC
** *** * * *
7504330 CAATTGTTTTATGACAAAACAAAATGTCATAATGTTTTGAAATAGATAATTATTTAGATAGTCAT
1 CAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATTATTCAAATAGACAT
*
7504395 AATTATTTCAACTTGATCGATAAGAAA
66 AACTATTTCAACTTGATCGATAAGAAA
* *
7504422 CAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAA-TAGTTCAAATGGACA
1 CAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATTA-TTCAAATAGACA
* *
7504486 TGACTATTTGAACT
65 TAACTATTTCAACT
7504500 GGTTTGGTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
91 2 0.03
92 62 0.97
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.35
Consensus pattern (92 bp):
CAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATTATTCAAATAGACAT
AACTATTTCAACTTGATCGATAAGAAA
Found at i:7505876 original size:7 final size:7
Alignment explanation
Indices: 7505864--7505894 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
7505854 TACATTTAGG
7505864 ATATTTA
1 ATATTTA
7505871 ATATTTA
1 ATATTTA
7505878 ATATTTA
1 ATATTTA
7505885 ATAATTTA
1 AT-ATTTA
7505893 AT
1 AT
7505895 TTAATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATATTTA
Found at i:7506366 original size:36 final size:34
Alignment explanation
Indices: 7506325--7506393 Score: 102
Period size: 36 Copynumber: 2.0 Consensus size: 34
7506315 AATTGTTATT
7506325 ATTAAGATAATAATAATAATGTTATAATTAATAATA
1 ATTAAGATAATAAT-ATAAT-TTATAATTAATAATA
* *
7506361 ATTAAGATAATAATATAGTTTATCATTAATAAT
1 ATTAAGATAATAATATAATTTATAATTAATAAT
7506394 TAATATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 13 0.42
35 4 0.13
36 14 0.45
ACGTcount: A:0.52, C:0.01, G:0.06, T:0.41
Consensus pattern (34 bp):
ATTAAGATAATAATATAATTTATAATTAATAATA
Found at i:7506894 original size:25 final size:24
Alignment explanation
Indices: 7506841--7506903 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
7506831 TAATAAATCT
*
7506841 ATTTATATATTTAATAAATATAATT
1 ATTTATA-ATTTAATAAATATAATA
*
7506866 ATTTATAATTATAACTAATTAT-ATA
1 ATTTATAATT-TAA-TAAATATAATA
7506891 ATTTATTAATTTA
1 ATTTA-TAATTTA
7506904 TATTATAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 3 0.09
25 19 0.58
26 11 0.33
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTTATAATTTAATAAATATAATA
Found at i:7507364 original size:17 final size:17
Alignment explanation
Indices: 7507344--7507393 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
7507334 AATCATATTA
7507344 ATTATAATATTATAAGT
1 ATTATAATATTATAAGT
*
7507361 ATTATAATATTTTATAATT
1 ATTATAATA--TTATAAGT
*
7507380 AAT-TAATATTATAA
1 ATTATAATATTATAA
7507394 AATTAATGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 6 0.21
17 9 0.31
18 5 0.17
19 9 0.31
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
ATTATAATATTATAAGT
Found at i:7507388 original size:18 final size:18
Alignment explanation
Indices: 7507348--7507400 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
7507338 ATATTAATTA
*
7507348 TAATATTATAAGTATT-A-
1 TAATATTATAA-AATTAAT
* *
7507365 TAATATTTTATAATTAAT
1 TAATATTATAAAATTAAT
7507383 TAATATTATAAAATTAAT
1 TAATATTATAAAATTAAT
7507401 GACAAATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 3 0.10
17 10 0.34
18 16 0.55
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TAATATTATAAAATTAAT
Found at i:7507507 original size:27 final size:28
Alignment explanation
Indices: 7507472--7507533 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
7507462 TTTCAACAAT
7507472 TATTA-ATTAATCAAATAGTA-AAATA-A
1 TATTATATTAATCAAATA-TATAAATATA
*
7507498 TATTATATTAGTCAAATATATAAATATA
1 TATTATATTAATCAAATATATAAATATA
7507526 TATTATAT
1 TATTATAT
7507534 ATTATTTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 7 0.22
27 16 0.50
28 9 0.28
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (28 bp):
TATTATATTAATCAAATATATAAATATA
Found at i:7507782 original size:20 final size:22
Alignment explanation
Indices: 7507733--7507777 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7507723 AATCTTTTAC
7507733 TTAATATATGAATATAAAATAT
1 TTAATATATGAATATAAAATAT
*
7507755 TTAATATATGAATA-ACAATAT
1 TTAATATATGAATATAAAATAT
7507776 TT
1 TT
7507778 TTATAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.42
Consensus pattern (22 bp):
TTAATATATGAATATAAAATAT
Found at i:7508686 original size:23 final size:23
Alignment explanation
Indices: 7508660--7508707 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7508650 TTATAACTAA
*
7508660 TATAATAACAATTATA-TAATCTT
1 TATAATAA-AATTATATTAATATT
*
7508683 TATAATAATATTATATTAATATT
1 TATAATAAAATTATATTAATATT
7508706 TA
1 TA
7508708 AAAAATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TATAATAAAATTATATTAATATT
Found at i:7509334 original size:19 final size:18
Alignment explanation
Indices: 7509310--7509352 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7509300 CAATTTAAAT
*
7509310 AATTATGACTAGCTCAAAG
1 AATTATGACTA-CTCAAAC
* *
7509329 AATTATTACTACTTAAAC
1 AATTATGACTACTCAAAC
7509347 AATTAT
1 AATTAT
7509353 ATATTTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (18 bp):
AATTATGACTACTCAAAC
Found at i:7509942 original size:28 final size:31
Alignment explanation
Indices: 7509910--7509974 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
7509900 TTAATCTATT
* *
7509910 ATTAATATTATATT-AT-ATAG-TAATAAAA
1 ATTAATAATAAATTAATAATAGATAATAAAA
*
7509938 ATTAATAATAAATTAATAATAGATAATAAAT
1 ATTAATAATAAATTAATAATAGATAATAAAA
7509969 ATTAAT
1 ATTAAT
7509975 TATTTAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 12 0.39
29 2 0.06
30 4 0.13
31 13 0.42
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (31 bp):
ATTAATAATAAATTAATAATAGATAATAAAA
Found at i:7509952 original size:11 final size:11
Alignment explanation
Indices: 7509930--7509958 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7509920 TATTATATAG
7509930 TAATAA-AAAT
1 TAATAATAAAT
7509940 TAATAATAAAT
1 TAATAATAAAT
7509951 TAATAATA
1 TAATAATA
7509959 GATAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAATAAAT
Found at i:7510279 original size:19 final size:20
Alignment explanation
Indices: 7510214--7510279 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 20
7510204 ATATGTATTT
*
7510214 TTATAA-TATTAATAA-ATA
1 TTATAATTATTAATAATAGA
*
7510232 TAATTAA-TATTAATAATAGA
1 TTA-TAATTATTAATAATAGA
*
7510252 TTATCATTATT-ATAATA-A
1 TTATAATTATTAATAATAGA
7510270 TTACTAATTA
1 TTA-TAATTA
7510280 ATACTAAGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 6 0.15
19 25 0.64
20 8 0.21
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (20 bp):
TTATAATTATTAATAATAGA
Found at i:7510885 original size:10 final size:11
Alignment explanation
Indices: 7510868--7510896 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
7510858 ATATTATTTT
7510868 ATTAATTAAAA
1 ATTAATTAAAA
7510879 A-TAATTAAAA
1 ATTAATTAAAA
7510889 ATTAATTA
1 ATTAATTA
7510897 TTTAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTAATTAAAA
Found at i:7511290 original size:26 final size:27
Alignment explanation
Indices: 7511243--7511298 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
7511233 TTAATTAAAA
*
7511243 TATAAATATTTTAATTAAATTATT-AT
1 TATAAATATTATAATTAAATTATTAAT
*
7511269 TATAAATACTTATAATT-TATTATTAAT
1 TATAAATA-TTATAATTAAATTATTAAT
7511296 TAT
1 TAT
7511299 CTGAATATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (27 bp):
TATAAATATTATAATTAAATTATTAAT
Found at i:7511314 original size:27 final size:28
Alignment explanation
Indices: 7511284--7511351 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
7511274 ATACTTATAA
7511284 TTTATTATTAATTATCTGAA-TATTGAT
1 TTTATTATTAATTATCTGAATTATTGAT
* * * *
7511311 TTTAAT-TTAAATATTTTAATTATTGAT
1 TTTATTATTAATTATCTGAATTATTGAT
7511338 TTTAATTAATTAAT
1 TTT-ATT-ATTAAT
7511352 AGATATTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 15 0.48
28 2 0.06
30 4 0.13
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (28 bp):
TTTATTATTAATTATCTGAATTATTGAT
Found at i:7511320 original size:26 final size:26
Alignment explanation
Indices: 7511290--7511349 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
7511280 ATAATTTATT
7511290 ATTAATTATCTGAA-TATTGATTTTA
1 ATTAATTATCTGAATTATTGATTTTA
* * *
7511315 ATTTAAATATTTTAATTATTGATTTTA
1 A-TTAATTATCTGAATTATTGATTTTA
7511342 ATTAATTA
1 ATTAATTA
7511350 ATAGATATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.03
26 16 0.55
27 12 0.41
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (26 bp):
ATTAATTATCTGAATTATTGATTTTA
Found at i:7511341 original size:13 final size:13
Alignment explanation
Indices: 7511304--7511345 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7511294 ATTATCTGAA
7511304 TATTGATTTTAATT
1 TATTGATTTTAA-T
*
7511318 TAAAT-ATTTTAAT
1 T-ATTGATTTTAAT
7511331 TATTGATTTTAAT
1 TATTGATTTTAAT
7511344 TA
1 TA
7511346 ATTAATAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 2 0.08
13 12 0.50
14 8 0.33
15 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
TATTGATTTTAAT
Found at i:7512019 original size:16 final size:17
Alignment explanation
Indices: 7511998--7512030 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7511988 TATTGATTTC
7511998 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
7512014 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
7512031 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:7512253 original size:22 final size:21
Alignment explanation
Indices: 7512203--7512267 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
7512193 ATAAATATTT
*
7512203 ATATTTATATTA-AATTATAA
1 ATATTTATATAATAATTATAA
* *
7512223 ATAAATTATATAATAATTACTTA
1 AT-ATTTATATAATAATTA-TAA
7512246 ATATTTATATAATACA-TATAA
1 ATATTTATATAATA-ATTATAA
7512267 A
1 A
7512268 ATTATTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
20 2 0.06
21 11 0.31
22 18 0.50
23 5 0.14
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATTTATATAATAATTATAA
Found at i:7512467 original size:23 final size:23
Alignment explanation
Indices: 7512439--7512526 Score: 65
Period size: 23 Copynumber: 3.8 Consensus size: 23
7512429 ATTTAAATAT
7512439 TAATATATTATAAATATTTA-TAA
1 TAATATATTAT-AATATTTAGTAA
* * * *
7512462 TAATATAGTATATTAATTATTAA
1 TAATATATTATAATATTTAGTAA
*
7512485 TAACTAT-TTATAATATGTAGTAAA
1 TAA-TATATTATAATATTTAGT-AA
*
7512509 TAGTATAATTATAA-ATTT
1 TAATAT-ATTATAATATTT
7512527 TTAACTCTAA
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
22 6 0.12
23 28 0.56
24 10 0.20
25 6 0.12
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.47
Consensus pattern (23 bp):
TAATATATTATAATATTTAGTAA
Found at i:7512632 original size:21 final size:22
Alignment explanation
Indices: 7512607--7512647 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7512597 TATATTAGAC
* *
7512607 TATTAGTTATTATTA-ATATTT
1 TATTAATTATAATTATATATTT
7512628 TATTAATTATAATTATATAT
1 TATTAATTATAATTATATAT
7512648 AATTGATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TATTAATTATAATTATATATTT
Found at i:7513169 original size:32 final size:35
Alignment explanation
Indices: 7513100--7513169 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
7513090 TGACTAATTA
*
7513100 ATTAACTTATTTAAAAATTAATAAATCTTATACTT
1 ATTAACTTATTTAAAAATTAATAAATCTAATACTT
7513135 ATTAA-TT-TTTAAAATATTAATAAAT-TAATA-TT
1 ATTAACTTATTTAAAA-ATTAATAAATCTAATACTT
7513167 ATT
1 ATT
7513170 TTAATCCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
32 5 0.15
33 11 0.33
34 12 0.36
35 5 0.15
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (35 bp):
ATTAACTTATTTAAAAATTAATAAATCTAATACTT
Found at i:7513441 original size:16 final size:17
Alignment explanation
Indices: 7513420--7513452 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7513410 TAGCGATTAG
7513420 AAATAG-ATAATTATTC
1 AAATAGTATAATTATTC
7513436 AAATAGTTATAATTATT
1 AAATAG-TATAATTATT
7513453 TGAACTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
AAATAGTATAATTATTC
Found at i:7513842 original size:180 final size:179
Alignment explanation
Indices: 7513121--7513877 Score: 511
Period size: 181 Copynumber: 4.2 Consensus size: 179
7513111 TAAAAATTAA
* * * * * * *
7513121 TAAATCTTATACTTATTAATTTTTAAAATATTAATAAATTA-ATATTATTTTAATCCAAATAGGC
1 TAAATATT-TACTTATTAATTTTCAAAATATTAATAAAATAGA-ATTATATTATTTCAAATAAGC
* * * * * * * * * *
7513185 T-TTA-ATGAAGAAAAACAATTGTGTCATGAGAAAACAAAAAGTCATAACAATTAGAAATAAATA
64 TAGTACA--AACAGAAACAATTATTTTATGACAAAACAAAATGTCATAATAATTTGAAATAAATA
* * * ** * *
7513248 ATTATTCAAATAGTCATAATTATTTAAACTTATTT-GATAAATAAATTTATTTTT
127 ATTATTCAAATAGTTATAAATATTTGAACTGGTTTAG-TAAACAATTTTA-TTTT
* * * ** * * * * * *
7513302 TAAATCTTTTACTTATTAGTTGTCTGAATATTAATAAATTTGTATAATTTTATTTGAAATAAGCT
1 TAAAT-ATTTACTTATTAATTTTCAAAATATTAATAAAATAGAATTATATTATTTCAAATAAGCT
* ** * * * * * * *** * *
7513367 TGTATGAATAGAAA-ATTTTGTTTTAGGACAAAACAAAAAGTTATAGCGATTAGAAATAGATAAT
65 AGTACAAACAGAAACA-ATTATTTTATGACAAAACAAAATGTCATAATAATTTGAAATAAATAAT
* *
7513431 TATTCAAATAGTTATAATTATTTGAACTTGTTT-GATAAAC-ATATTTATTTT
129 TATTCAAATAGTTATAAATATTTGAACTGGTTTAG-TAAACAAT-TTTATTTT
* * * * *
7513482 TTAA-ATCT-CTTATTAATTTTTAGAATATTAATAAAATAGAATTATATTATTTCAAATAAGTTA
1 TAAATATTTACTTATTAATTTTCAAAATATTAATAAAATAGAATTATATTATTTCAAATAAGCTA
* * * * * *
7513545 GTATAGACAGAAACAATTGTTTTGTGATAAAACAAAATGTCATAATGATTTGAAATAAATAATTA
66 GTACAAACAGAAACAATTATTTTATGACAAAACAAAATGTCATAATAATTTGAAATAAATAATTA
* * * * * **
7513610 TTCAAACAGTCATAACTATTTGCACTGG-TCAG--GCCAATTGATTCATTTTT
131 TTCAAATAGTTATAAATATTTGAACTGGTTTAGTAAACAATT--TT-A-TTTT
* * * *
7513660 TAAATATATTACTTATTAA-TTTCAAAATATTGATAGATTAGTATTACT-TTATTTCAAATAAGA
1 TAAATAT-TTACTTATTAATTTTCAAAATATTAATAAAATAGAATTA-TATTATTTCAAATAAG-
* *
7513723 CT-GTACAAACAGAAATAATTATTTTATGACAATAC-AAATGGTCATAATAATTTGAAATAAATA
63 CTAGTACAAACAGAAACAATTATTTTATGACAAAACAAAAT-GTCATAATAATTTGAAATAAATA
* *
7513786 ATTGTTCAAATAGTTATAAATAATTGAACTGGTTTAGTAAACAATTTTACTTTT
127 ATTATTCAAATAGTTATAAATATTTGAACTGGTTTAGTAAACAATTTTA-TTTT
* *
7513840 TAAATTTCTTACTTCTTAATTTTCAAAATATTAATAAA
1 TAAATAT-TTACTTATTAATTTTCAAAATATTAATAAA
7513878 TTCATTGTTT
Statistics
Matches: 454, Mismatches: 99, Indels: 46
0.76 0.17 0.08
Matches are distributed among these distances:
174 2 0.00
175 2 0.00
176 3 0.01
177 118 0.26
178 10 0.02
179 6 0.01
180 140 0.31
181 164 0.36
182 4 0.01
183 5 0.01
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.41
Consensus pattern (179 bp):
TAAATATTTACTTATTAATTTTCAAAATATTAATAAAATAGAATTATATTATTTCAAATAAGCTA
GTACAAACAGAAACAATTATTTTATGACAAAACAAAATGTCATAATAATTTGAAATAAATAATTA
TTCAAATAGTTATAAATATTTGAACTGGTTTAGTAAACAATTTTATTTT
Found at i:7513987 original size:19 final size:19
Alignment explanation
Indices: 7513965--7514001 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7513955 AATAGTCATA
7513965 TATTT-AATTAATATTTAAT
1 TATTTAAATTAA-ATTTAAT
7513984 TATTTAAATTAAATTTAA
1 TATTTAAATTAAATTTAA
7514002 AAAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTAAATTAAATTTAAT
Found at i:7515765 original size:181 final size:178
Alignment explanation
Indices: 7515402--7516066 Score: 583
Period size: 181 Copynumber: 3.7 Consensus size: 178
7515392 AATCATTAAC
* * * * * * * * * *
7515402 AAAAGGTTATAATGTTTTAAAATAGATAATTGTTTAGATAGTCATAACTATTTGAACATGGTT-G
1 AAAAGGTCATAATGATTTAAAATAAATAATTATTCAAATTGTCATATCTATTTAAAC-T-TTTCG
* * * * * * * *
7515466 GCAAACAGATTCATTTTTTAATTCTTTTACTCATTAATTTTCATAATATTAATAAATTAGTATTA
64 GTAAACAAATTCATTTTTTAAATCTTCTACTTATTAATTGTCA-AAAATTAATAAATTAATATTA
* * * * * *
7515531 TTTTATTTCAAATAAGCTTATTTGAACTGAAACAATTGTTTTATTACAAAACA
128 TTTTATTT-GAATAAGCTTGTATGAACAGAAA-AATTATTTTATGACAAAACA
* * ** * *
7515584 AAAAGGGCATAATGATTTGAAATAGTTAATTATTCAAATTGTCATGTCTATTTCAACTTGTTCGG
1 AAAAGGTCATAATGATTTAAAATAAATAATTATTCAAATTGTCATATCTATTTAAACTT-TTCGG
* *
7515649 TAAACATATTTATTTTTTAAATCTTCTACTTATTAATTGTCAAAAATTAATAAATTAATATTACT
65 TAAACAAATTCATTTTTTAAATCTTCTACTTATTAATTGTCAAAAATTAATAAATTAATATTA-T
* * * *
7515714 TTAATTTGAATAACCTTGTATGAACAGAAATAACTATTTTATGCCAAAACA
129 TTTATTTGAATAAGCTTGTATGAACAGAAA-AATTATTTTATGACAAAACA
** * * *
7515765 AAAA-GTCATAACAATTTAAAATAAATAATTATTCAAATAGTCATAAC-AGTTTGAACTTATTCG
1 AAAAGGTCATAATGATTTAAAATAAATAATTATTCAAATTGTCATATCTA-TTTAAACTT-TTCG
* * * * * *
7515828 ATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAAATTTATATTA
64 GTAAACAAATTCATTTTTTAAATCTTCTACTTATTAATTGTC-AAAAATTAATAAATTAATATTA
* *
7515893 TTTTATTTGAAAGAAGCTTGTATGAACA-AAAAATTTTATTTTATGATAAAAC-
128 TTTTATTTG-AATAAGCTTGTATGAACAGAAAAA--TTATTTTATGACAAAACA
* * *
7515945 AAAAGGTTATACTGATTTCAAAA-AAATAATTGTTCAAA-TGTCATAAT-TATTTAAACTTTTCT
1 AAAAGGTCATAATGATTT-AAAATAAATAATTATTCAAATTGTCAT-ATCTATTTAAACTTTTC-
* * * *
7516007 AGTAAACAAATTCATTTTTTTAAATC-TCTTAATTATTAATTTTCAAAATATTGATAAATT
63 GGTAAACAAATTCA-TTTTTTAAATCTTC-TACTTATTAATTGTCAAAA-ATTAATAAATT
7516067 GGTATTAAAA
Statistics
Matches: 394, Mismatches: 73, Indels: 33
0.79 0.15 0.07
Matches are distributed among these distances:
179 6 0.02
180 127 0.32
181 168 0.43
182 93 0.24
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (178 bp):
AAAAGGTCATAATGATTTAAAATAAATAATTATTCAAATTGTCATATCTATTTAAACTTTTCGGT
AAACAAATTCATTTTTTAAATCTTCTACTTATTAATTGTCAAAAATTAATAAATTAATATTATTT
TATTTGAATAAGCTTGTATGAACAGAAAAATTATTTTATGACAAAACA
Found at i:7516424 original size:28 final size:28
Alignment explanation
Indices: 7516362--7516426 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 28
7516352 AATTTACTTG
* *
7516362 AATATTAATGATAAAATATTAAATTAAT
1 AATATTATTAATAAAATATTAAATTAAT
7516390 AA-A--ATTAATAAAATATT-AATTAATT
1 AATATTATTAATAAAATATTAAATTAA-T
7516415 AATATTATTAAT
1 AATATTATTAAT
7516427 TATCTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
24 6 0.19
25 15 0.48
26 1 0.03
27 1 0.03
28 8 0.26
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (28 bp):
AATATTATTAATAAAATATTAAATTAAT
Found at i:7516425 original size:17 final size:17
Alignment explanation
Indices: 7516403--7516437 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7516393 ATTAATAAAA
7516403 TATTAATTAAT-TAATAT
1 TATTAATT-ATCTAATAT
7516420 TATTAATTATCTAATAT
1 TATTAATTATCTAATAT
7516437 T
1 T
7516438 TCATAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTAATTATCTAATAT
Found at i:7516680 original size:13 final size:14
Alignment explanation
Indices: 7516662--7516693 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7516652 AATTCTTATG
7516662 ATTTAAA-TATATA
1 ATTTAAATTATATA
7516675 ATTTAAATTATATA
1 ATTTAAATTATATA
7516689 ATTTA
1 ATTTA
7516694 TTAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTAAATTATATA
Found at i:7516787 original size:16 final size:16
Alignment explanation
Indices: 7516766--7516811 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
7516756 ATTTAAACAA
7516766 AATTTTAAATAATTTT
1 AATTTTAAATAATTTT
7516782 AATTTTAAATAATTTT
1 AATTTTAAATAATTTT
7516798 AATTATATAAATAA
1 AATT-T-TAAATAA
7516812 ATTAGATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 20 0.71
17 1 0.04
18 7 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTTAAATAATTTT
Found at i:7516884 original size:25 final size:24
Alignment explanation
Indices: 7516848--7516901 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
7516838 TATATTATAG
7516848 TATTAAATATAACTAGTAAAAATA
1 TATTAAATATAACTAGTAAAAATA
* * *
7516872 TATTTAATAATAATTATTAAAAATA
1 TATTAAAT-ATAACTAGTAAAAATA
7516897 T-TTAA
1 TATTAA
7516902 TTGAATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (24 bp):
TATTAAATATAACTAGTAAAAATA
Found at i:7517500 original size:15 final size:15
Alignment explanation
Indices: 7517451--7517501 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
7517441 AATTTTACTA
7517451 ATATTAATAAT-TTT
1 ATATTAATAATATTT
*
7517465 AGTATTAATAGTAAAATTT
1 A-TATT-A-A-TAATATTT
7517484 ATATTAATAATATTT
1 ATATTAATAATATTT
7517499 ATA
1 ATA
7517502 AGATAGTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 1 0.03
15 14 0.47
16 2 0.07
17 2 0.07
18 7 0.23
19 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (15 bp):
ATATTAATAATATTT
Found at i:7519562 original size:13 final size:13
Alignment explanation
Indices: 7519540--7519581 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
7519530 ATAATTAATC
7519540 AATTAATAATATT
1 AATTAATAATATT
*
7519553 AATT-ATTA-ATT
1 AATTAATAATATT
*
7519564 AATTAATAATGTT
1 AATTAATAATATT
7519577 AATTA
1 AATTA
7519582 TTTTAACAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 7 0.29
12 6 0.25
13 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (13 bp):
AATTAATAATATT
Found at i:7519562 original size:24 final size:24
Alignment explanation
Indices: 7519533--7519583 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
7519523 TATTATCATA
7519533 ATTAATCAATTAATAATATTAATT
1 ATTAATCAATTAATAATATTAATT
* *
7519557 ATTAATTAATTAATAATGTTAATT
1 ATTAATCAATTAATAATATTAATT
7519581 ATT
1 ATT
7519584 TTAACAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
ATTAATCAATTAATAATATTAATT
Found at i:7519713 original size:26 final size:29
Alignment explanation
Indices: 7519656--7519718 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 29
7519646 TTAAGATTAT
* * *
7519656 TTATTAATACATTATATATATAATACTTA
1 TTATTAATACATTAAATATATAATAATGA
7519685 TTATT-ATAC-TTAAATA-ATAATAATGA
1 TTATTAATACATTAAATATATAATAATGA
7519711 TTAATTAA
1 TT-ATTAA
7519719 ATATATAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 10 0.34
27 9 0.31
28 5 0.17
29 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (29 bp):
TTATTAATACATTAAATATATAATAATGA
Found at i:7519777 original size:11 final size:11
Alignment explanation
Indices: 7519761--7519801 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
7519751 ATAAATTACC
*
7519761 TTATATTATAT
1 TTATATTATAA
7519772 TTATATTATAA
1 TTATATTATAA
*
7519783 ATA-ATTATAA
1 TTATATTATAA
7519793 TTATATTAT
1 TTATATTAT
7519802 TGATAATCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TTATATTATAA
Found at i:7520275 original size:19 final size:18
Alignment explanation
Indices: 7520213--7520281 Score: 59
Period size: 20 Copynumber: 3.6 Consensus size: 18
7520203 ATTATATTAG
* *
7520213 ATAATTATTAACTACAAA
1 ATAATAATTAACTATAAA
7520231 AT-ATAATTATACTAAATAAA
1 ATAATAATTA-ACT--ATAAA
7520251 ATTAATAATTTAACTATAAA
1 A-TAATAA-TTAACTATAAA
*
7520271 ATAATTATTAA
1 ATAATAATTAA
7520282 ATATTAAGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
17 6 0.14
18 9 0.21
19 5 0.12
20 11 0.26
21 1 0.02
22 7 0.17
23 3 0.07
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATAATTAACTATAAA
Found at i:7520351 original size:29 final size:30
Alignment explanation
Indices: 7520316--7520390 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 30
7520306 AAAATATAAA
7520316 TAATTATATAATATTATT-TATAATTATA-T
1 TAATTATATAATATTATTATATAA-TATACT
*
7520345 TAGTTAT-TAAT-TTAATTATATAATATACT
1 TAATTATATAATATT-ATTATATAATATACT
*
7520374 TAATTATTAAAATATTA
1 TAATTA-TATAATATTA
7520391 AGTAGGATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
27 2 0.05
28 11 0.30
29 17 0.46
30 1 0.03
31 4 0.11
32 2 0.05
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (30 bp):
TAATTATATAATATTATTATATAATATACT
Found at i:7520944 original size:24 final size:24
Alignment explanation
Indices: 7520917--7520965 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
7520907 ATGAACTAAG
7520917 ATAATTGTAATAAT-TATTA-TTATA
1 ATAATT-T-ATAATATATTATTTATA
7520941 ATAATTTATAATATATTATTTATA
1 ATAATTTATAATATATTATTTATA
7520965 A
1 A
7520966 CACGTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 6 0.26
24 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATTTATAATATATTATTTATA
Found at i:7521048 original size:16 final size:17
Alignment explanation
Indices: 7521010--7521051 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
7521000 ATTAATATAA
7521010 TATAACTATATATTAAAT
1 TATAA-TATATATTAAAT
7521028 TATAATATA-ATT-AAT
1 TATAATATATATTAAAT
7521043 TAATAATAT
1 T-ATAATAT
7521052 TGTTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.17
16 10 0.43
17 4 0.17
18 5 0.22
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TATAATATATATTAAAT
Found at i:7521164 original size:19 final size:18
Alignment explanation
Indices: 7521137--7521189 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
7521127 TATTTATTTC
*
7521137 AAATCATTAAAATAATAAT
1 AAATAATTAAAATAA-AAT
7521156 AAATAATTAAAAT-AAAT
1 AAATAATTAAAATAAAAT
7521173 ATAATAATTATAAATAA
1 A-AATAATTA-AAATAA
7521190 CTTAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 9 0.30
19 16 0.53
20 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAATTAAAATAAAAT
Found at i:7521168 original size:9 final size:9
Alignment explanation
Indices: 7521137--7521195 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
7521127 TATTTATTTC
*
7521137 AAATCATTA
1 AAATAATTA
*
7521146 AAATAATAA
1 AAATAATTA
7521155 TAAATAATTA
1 -AAATAATTA
*
7521165 AAATAAATA
1 AAATAATTA
*
7521174 TAATAATTA
1 AAATAATTA
7521183 TAAATAACTTA
1 -AAATAA-TTA
7521194 AA
1 AA
7521196 TATATAATAG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
9 22 0.55
10 15 0.38
11 3 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATAATTA
Found at i:7521178 original size:28 final size:31
Alignment explanation
Indices: 7521147--7521204 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 31
7521137 AAATCATTAA
7521147 AATAATAATAAATAA-TTAAA-ATA-AATAT
1 AATAATAATAAATAACTTAAATATATAATAT
*
7521175 AATAATTATAAATAACTTAAATATATAATA
1 AATAATAATAAATAACTTAAATATATAATA
7521205 GTTATTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.54
29 5 0.19
30 3 0.12
31 4 0.15
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (31 bp):
AATAATAATAAATAACTTAAATATATAATAT
Found at i:7521246 original size:25 final size:25
Alignment explanation
Indices: 7521207--7521283 Score: 84
Period size: 25 Copynumber: 3.0 Consensus size: 25
7521197 ATATAATAGT
*
7521207 TATTAATATTATATAAATAATAAATA
1 TATT-ATATTATATAAATTATAAATA
*
7521233 TATTATATTATAT-AATTATATAGTA
1 TATTATATTATATAAATTATA-AATA
* * *
7521258 TAATATATAATATAATTTATAAATA
1 TATTATATTATATAAATTATAAATA
7521283 T
1 T
7521284 GATATAATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
25 27 0.63
26 10 0.23
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
TATTATATTATATAAATTATAAATA
Found at i:7521251 original size:33 final size:35
Alignment explanation
Indices: 7521171--7521254 Score: 93
Period size: 35 Copynumber: 2.4 Consensus size: 35
7521161 ATTAAAATAA
*
7521171 ATATAATAATTATAAATAACTTAAATATATAATAGTT
1 ATATAATTA-TATAAATAAC-TAAATATATAATAGTT
*
7521208 AT-TAATATTATATAAATAA-TAAATATATTATA-TT
1 ATAT-A-ATTATATAAATAACTAAATATATAATAGTT
7521242 ATATAATTATATA
1 ATATAATTATATA
7521255 GTATAATATA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
33 8 0.19
34 5 0.12
35 13 0.31
36 1 0.02
37 12 0.29
38 3 0.07
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (35 bp):
ATATAATTATATAAATAACTAAATATATAATAGTT
Found at i:7521253 original size:20 final size:19
Alignment explanation
Indices: 7521208--7521268 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
7521198 TATAATAGTT
*
7521208 ATTA-ATATTATATAAATA
1 ATTATATATTATATATATA
*
7521226 ATAAATATATTATATTATATA
1 AT-TATATATTATA-TATATA
*
7521247 ATTATATAGTATAATATATA
1 ATTATATATTAT-ATATATA
7521267 AT
1 AT
7521269 ATAATTTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 2 0.06
19 1 0.03
20 24 0.69
21 8 0.23
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
ATTATATATTATATATATA
Found at i:7521264 original size:12 final size:11
Alignment explanation
Indices: 7521195--7521289 Score: 58
Period size: 12 Copynumber: 8.5 Consensus size: 11
7521185 AATAACTTAA
7521195 ATATATAATAGT
1 ATATATAATA-T
7521207 -TAT-TAATAT
1 ATATATAATAT
7521216 -TATATAAATAAT
1 ATATAT-AAT-AT
* *
7521228 AAATATATTAT
1 ATATATAATAT
7521239 ATTATATAATTAT
1 A-TATATAA-TAT
7521252 ATAGTATAATAT
1 ATA-TATAATAT
7521264 ATAATATAAT-T
1 AT-ATATAATAT
7521275 -TATA-AATAT
1 ATATATAATAT
7521284 GATATA
1 -ATATA
7521290 ATTAGATTAT
Statistics
Matches: 68, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
8 3 0.04
9 8 0.12
10 7 0.10
11 14 0.21
12 22 0.32
13 14 0.21
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (11 bp):
ATATATAATAT
Found at i:7521283 original size:18 final size:19
Alignment explanation
Indices: 7521256--7521292 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7521246 AATTATATAG
7521256 TATAATATATAATATAATT
1 TATAATATATAATATAATT
*
7521275 TATAA-ATATGATATAATT
1 TATAATATATAATATAATT
7521293 AGATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TATAATATATAATATAATT
Found at i:7521984 original size:18 final size:18
Alignment explanation
Indices: 7521957--7522049 Score: 64
Period size: 18 Copynumber: 4.9 Consensus size: 18
7521947 CTTGTTAATT
*
7521957 TATT-ATTAATTTTAAAA
1 TATTAATTAATTATAAAA
*
7521974 TATTAATTAATTATAAAG
1 TATTAATTAATTATAAAA
* * *
7521992 TATTATAATACTTATAATA
1 TATTA-ATTAATTATAAAA
7522011 T-TATAATTAATATTATAAAA
1 TAT-TAATT-A-ATTATAAAA
*
7522031 TTATTAAATTATTTATAAA
1 -TATT-AATTAATTATAAA
7522050 TTTAAAGTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
17 4 0.07
18 19 0.33
19 13 0.22
20 14 0.24
21 3 0.05
22 5 0.09
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (18 bp):
TATTAATTAATTATAAAA
Found at i:7522036 original size:17 final size:18
Alignment explanation
Indices: 7521957--7522042 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 18
7521947 CTTGTTAATT
*
7521957 TATTATTAATTTTA-AAA
1 TATTATTAATATTATAAA
7521974 TATTAATT-A-ATTATAAA
1 TATT-ATTAATATTATAAA
7521991 GTATTA-TAATACTTATAATA
1 -TATTATTAATA-TTATAA-A
*
7522011 TTATAATTAATATTATAAA
1 -TATTATTAATATTATAAA
7522030 -ATTATTAA-ATTAT
1 TATTATTAATATTAT
7522043 TTATAAATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
16 9 0.16
17 17 0.30
18 8 0.14
19 7 0.12
20 11 0.19
21 5 0.09
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (18 bp):
TATTATTAATATTATAAA
Found at i:7522046 original size:20 final size:19
Alignment explanation
Indices: 7521956--7522049 Score: 65
Period size: 20 Copynumber: 4.9 Consensus size: 19
7521946 ACTTGTTAAT
7521956 TTATT-ATTAATTT-TAAAA
1 TTATTAATT-ATTTATAAAA
*
7521974 -TATTAATTAATTATAAAGTA
1 TTATTAATTATTTATAAA--A
* *
7521994 TTA-TAA-TACTTATAATA
1 TTATTAATTATTTATAAAA
7522011 TTA-TAATTAATATTATAAAA
1 TTATTAATT-AT-TTATAAAA
7522031 TTATTAAATTATTTATAAA
1 TTATT-AATTATTTATAAA
7522050 TTTAAAGTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
17 14 0.23
18 8 0.13
19 9 0.15
20 21 0.34
21 5 0.08
22 4 0.07
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (19 bp):
TTATTAATTATTTATAAAA
Found at i:7522419 original size:16 final size:14
Alignment explanation
Indices: 7522353--7522430 Score: 54
Period size: 13 Copynumber: 5.6 Consensus size: 14
7522343 ATTAATATAT
*
7522353 ATAATATATTAATTTA
1 ATAAT-TATT-ATTAA
*
7522369 ATATATTATAATTAA
1 ATA-ATTATTATTAA
* **
7522384 ATAA-TATAATTTC
1 ATAATTATTATTAA
*
7522397 AT-ATTATTAAT-A
1 ATAATTATTATTAA
7522409 ATAATTATTATTAA
1 ATAATTATTATTAA
7522423 ATAATTAT
1 ATAATTAT
7522431 AAATATTATT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
12 3 0.06
13 22 0.44
14 10 0.20
15 7 0.14
16 6 0.12
17 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (14 bp):
ATAATTATTATTAA
Found at i:7522427 original size:20 final size:20
Alignment explanation
Indices: 7522367--7522441 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
7522357 TATATTAATT
*
7522367 TAATATATTATAATTAAATAA
1 TAATA-ATTATTATTAAATAA
*
7522388 T-ATAATT-TCATATT-ATTAA
1 TAATAATTAT--TATTAAATAA
7522407 TAATAATTATTATTAAATAA
1 TAATAATTATTATTAAATAA
* *
7522427 TTATAAATATTATTA
1 TAATAATTATTATTA
7522442 TTATACTTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
18 1 0.02
19 12 0.27
20 29 0.66
21 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATAATTATTATTAAATAA
Found at i:7522517 original size:17 final size:18
Alignment explanation
Indices: 7522492--7522535 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
7522482 TTAGTTAGAA
7522492 TTATAAATAAT-TAT-AT
1 TTATAAATAATATATAAT
7522508 TTATTAAAT-ATATATAAT
1 TTA-TAAATAATATATAAT
7522526 TTATAAATAA
1 TTATAAATAA
7522536 GCTTATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.21
17 13 0.54
18 6 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TTATAAATAATATATAAT
Found at i:7523000 original size:15 final size:15
Alignment explanation
Indices: 7522968--7523030 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
7522958 TTAAACTTAA
*
7522968 TATATTATTATCAT-T
1 TATATTATTA-AATAT
7522983 TATATTATTAAATAT
1 TATATTATTAAATAT
*
7522998 TAT-TTAATAACATATT
1 TATATTATTAA-ATA-T
7523014 TAATATT-TTAAATAT
1 T-ATATTATTAAATAT
7523029 TA
1 TA
7523031 AAATAATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
14 9 0.22
15 19 0.47
16 5 0.12
17 5 0.12
18 2 0.05
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTATTAAATAT
Found at i:7523804 original size:180 final size:177
Alignment explanation
Indices: 7523617--7524244 Score: 554
Period size: 180 Copynumber: 3.5 Consensus size: 177
7523607 ATAATACTCT
* *
7523617 AAAAATTATTAAGTAAGAGATTTAAAAAATAAATGTATTTGTTGAACCAGTTCAAATAGTTAAGA
1 AAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TATTT-TTGAACCAGTTCAAATAGTTATGA
* * *
7523682 CTA-TTATAATAATTATCTATTTCAAATTATTTTGACTTTTTGTTTAGTCATAAAATAATTGTTC
64 CTATTTA-AACAATTATCTATTTCAAATCATTTTGAC-TTTTGTTTAGTCATAAAACAATTGTTC
* * * * *
7523746 AGTTCATACATGCTTATTTAAAATAAAATAATACTATTTTATTAACA-TTC
127 ATTTCATACAAGCTTATTTAAAATAAAATAATATTACTTTATTAATATTTC
* * * * *
7523796 AGAAAATTAATAAGCAA-AGAATTAAAAAATAAATT-TGTTTACCT-AACAATTTTAAATAGTTA
1 A-AAAATTAATAAGTAAGAGATTTAAAAAATAAATTAT-TTT---TGAACCAGTTCAAATAGTTA
* * *
7523858 TGACTATTTAAACAATTATC-ATTTTAAAATCGTTATT-ACCATTTGTTTTA-TCATAAAACAAT
61 TGACTATTTAAACAATTATCTA-TTTCAAATCATT-TTGA-CTTTTG-TTTAGTCATAAAACAAT
* **
7523920 TGTTTCATTTCATAAAAGCTTATCCAAAATAAAATAATATTACTTTATTAATATTTC
122 TG-TTCATTTCATACAAGCTTATTTAAAATAAAATAATATTACTTTATTAATATTTC
* * * * *
7523977 AAAAATTAAGAAGT-TGAAGATTTAAAACATAAATCATTTTATCGAATCAGTTCAAATAGTTATG
1 AAAAATTAATAAGTAAG-AGATTTAAAAAATAAATTATTTT-T-GAACCAGTTCAAATAGTTATG
* * * * *
7524041 GCCATTTGAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCATAAAACAATTGTTT
63 ACTATTTAAACAATTATCTATTTCAAATCATTTTG-ACTTTTGTTTAGTCATAAAACAATTGTTC
* * * * *
7524106 TTTCATCATACAAGCCTAATTAGAATAAAATAATATTAGTTTATTAATATTTC
127 ATT--TCATACAAGCTTATTTAAAATAAAATAATATTACTTTATTAATATTTC
* * * * *
7524159 AAAAATTAATAAGTAGGAGA-TT-----AT--CTGT-TTATTGAACTAGTTCAAATAATTATGAC
1 AAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TATTTTTGAACCAGTTCAAATAGTTATGAC
* *
7524215 TATTTAAACAATTATATATTTCAAGTCATT
65 TATTTAAACAATTATCTATTTCAAATCATT
7524245 ATAACCTTTT
Statistics
Matches: 363, Mismatches: 61, Indels: 57
0.75 0.13 0.12
Matches are distributed among these distances:
172 45 0.12
173 1 0.00
174 4 0.01
176 2 0.01
177 2 0.01
178 4 0.01
179 74 0.20
180 86 0.24
181 84 0.23
182 60 0.17
183 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTATTTTTGAACCAGTTCAAATAGTTATGACT
ATTTAAACAATTATCTATTTCAAATCATTTTGACTTTTGTTTAGTCATAAAACAATTGTTCATTT
CATACAAGCTTATTTAAAATAAAATAATATTACTTTATTAATATTTC
Found at i:7524095 original size:181 final size:177
Alignment explanation
Indices: 7523617--7524172 Score: 545
Period size: 181 Copynumber: 3.1 Consensus size: 177
7523607 ATAATACTCT
* * * * *
7523617 AAAAATTATTAAGT-AAGAGATTTAAAAAATAAATGTATTTGTTGAACCAGTTCAAATAGTTAAG
1 AAAAATTAATAAGTCAA-AGATTTAAAAAATAAATAT-TTTATCGAA-CAGTTCAAATAGTTATG
* * * *
7523681 ACTATTATAATAATTATCTATTTCAAATTATTTTG-ACTTTTTGTTTAGTCATAAAATAATTG-T
63 ACTATT-TAACAATTATCTATTTCAAATCATTTTGAAC-TTTTGTTTTGTCATAAAACAATTGTT
* * * * * *
7523744 TCAGTTCATACATGCTTATTTAAAATAAAATAATACTATTTTATTAACA-TTC
126 TCATTTCATAAAAGCTTA-TTAAAATAAAATAATATTACTTTATTAATATTTC
* * * * * *
7523796 AGAAAATTAATAAG-CAAAGAATTAAAAAATAAATTTGTTTACCTAACAATTTTAAATAGTTATG
1 A-AAAATTAATAAGTCAAAGATTTAAAAAATAAATAT-TTTATCGAAC-AGTTCAAATAGTTATG
* * * * *
7523860 ACTATTTAAACAATTATC-ATTTTAAAATCGTTATT-ACCATTTGTTTTATCATAAAACAATTGT
63 ACTATTT-AACAATTATCTA-TTTCAAATCATT-TTGAACTTTTGTTTTGTCATAAAACAATTGT
*
7523923 TTCATTTCATAAAAGCTTATCCAAAATAAAATAATATTACTTTATTAATATTTC
125 TTCATTTCATAAAAGCTTAT-TAAAATAAAATAATATTACTTTATTAATATTTC
* ** * *
7523977 AAAAATTAAGAAGTTGAAGATTTAAAACATAAATCATTTTATCGAATCAGTTCAAATAGTTATGG
1 AAAAATTAATAAGTCAAAGATTTAAAAAATAAAT-ATTTTATCGAA-CAGTTCAAATAGTTATGA
*
7524042 CCATTTGAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCATAAAACAATTGTTT-
64 CTATTT-AACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCATAAAACAATTGTTTC
* * *
7524106 -TTTCATCATACAAGCCTAATTAGAATAAAATAATATTAGTTTATTAATATTTC
128 ATTTCAT-A-A-AAG-CTTATTAAAATAAAATAATATTACTTTATTAATATTTC
7524159 AAAAATTAATAAGT
1 AAAAATTAATAAGT
7524173 AGGAGATTAT
Statistics
Matches: 308, Mismatches: 50, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
178 3 0.01
179 87 0.28
180 71 0.23
181 94 0.31
182 49 0.16
183 4 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
AAAAATTAATAAGTCAAAGATTTAAAAAATAAATATTTTATCGAACAGTTCAAATAGTTATGACT
ATTTAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCATAAAACAATTGTTTCATT
TCATAAAAGCTTATTAAAATAAAATAATATTACTTTATTAATATTTC
Found at i:7524344 original size:20 final size:22
Alignment explanation
Indices: 7524296--7524358 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
7524286 AACATAATAG
*
7524296 TATAATAATT-TATTACTATAC
1 TATAATAATTATATTAATATAC
*
7524317 TATTATAATTATATTAAT-TA-
1 TATAATAATTATATTAATATAC
7524337 TATAATAATTATAAATTAATAT
1 TATAATAATTAT--ATTAATAT
7524359 TAATTTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 11 0.31
21 11 0.31
22 12 0.34
23 1 0.03
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (22 bp):
TATAATAATTATATTAATATAC
Found at i:7524362 original size:20 final size:19
Alignment explanation
Indices: 7524317--7524362 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7524307 ATTACTATAC
7524317 TATT-ATAATTATATTAAT
1 TATTAATAATTATATTAAT
7524335 TATATAATAATTATAAATTAA-
1 TAT-TAATAATTAT--ATTAAT
7524356 TATTAAT
1 TATTAAT
7524363 TTTTATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 3 0.12
19 1 0.04
20 12 0.50
21 3 0.12
22 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAATAATTATATTAAT
Found at i:7525543 original size:24 final size:24
Alignment explanation
Indices: 7525516--7525569 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
7525506 TATCAATAAA
7525516 TAATTA-TATTAATATAAT-TTATTT
1 TAATTATTA-TAAT-TAATATTATTT
7525540 TAATTATTATAATTAATATTA--T
1 TAATTATTATAATTAATATTATTT
7525562 TAATTATT
1 TAATTATT
7525570 TAGATTTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 9 0.32
23 4 0.14
24 13 0.46
25 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TAATTATTATAATTAATATTATTT
Found at i:7525550 original size:19 final size:21
Alignment explanation
Indices: 7525518--7525569 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 21
7525508 TCAATAAATA
*
7525518 ATTATATTAATATAATT-TATT
1 ATTA-ATTATTATAATTATATT
7525539 -TTAATTATTATAATTAATATT
1 ATTAATTATTATAATT-ATATT
7525560 ATTAATTATT
1 ATTAATTATT
7525570 TAGATTTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 11 0.41
20 3 0.11
21 4 0.15
22 9 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTAATTATTATAATTATATT
Found at i:7525684 original size:19 final size:18
Alignment explanation
Indices: 7525662--7525712 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
7525652 GAAATATATT
7525662 TAATATTAATTATTATACA
1 TAATATTAATTATTA-ACA
7525681 TAATAATTATCATTATTAACA
1 TAAT-ATTA--ATTATTAACA
*
7525702 -AATTTTAATTA
1 TAATATTAATTA
7525713 AAAATTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 4 0.14
19 7 0.25
20 7 0.25
21 3 0.11
22 7 0.25
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATATTAATTATTAACA
Found at i:7525898 original size:19 final size:20
Alignment explanation
Indices: 7525876--7525930 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 20
7525866 ATTAAAAAAA
7525876 TAATTTAATATTTTT-TAAT
1 TAATTTAATATTTTTATAAT
7525895 TAATTTAATAATTATTTATAAT
1 TAATTTAAT-ATT-TTTATAAT
7525917 T-A-TTAATATTTTTA
1 TAATTTAATATTTTTA
7525931 CTAAATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
18 4 0.12
19 12 0.36
20 8 0.24
21 4 0.12
22 5 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATTTAATATTTTTATAAT
Found at i:7526072 original size:13 final size:13
Alignment explanation
Indices: 7526054--7526100 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
7526044 TTAATATAAT
7526054 TATTATATTATAG
1 TATTATATTATAG
* *
7526067 TATTATTTTATAA
1 TATTATATTATAG
7526080 TA-TATTATTAATAG
1 TATTA-TATT-ATAG
7526094 TATTATA
1 TATTATA
7526101 AATTGTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
12 2 0.07
13 16 0.59
14 7 0.26
15 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (13 bp):
TATTATATTATAG
Found at i:7526078 original size:27 final size:27
Alignment explanation
Indices: 7526048--7526099 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
7526038 ATTATTTTAA
*
7526048 TATAAT-TATTATATTATAGTATTATTT
1 TATAATATATTAT-TAATAGTATTATTT
7526075 TATAATATATTATTAATAGTATTAT
1 TATAATATATTATTAATAGTATTAT
7526100 AAATTGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (27 bp):
TATAATATATTATTAATAGTATTATTT
Found at i:7526357 original size:17 final size:17
Alignment explanation
Indices: 7526331--7526366 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7526321 AATAGCAATT
* *
7526331 ATTAATATTTATGATAA
1 ATTAAAATTTATAATAA
7526348 ATTAAAATTTATAATAA
1 ATTAAAATTTATAATAA
7526365 AT
1 AT
7526367 AATAATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTAAAATTTATAATAA
Done.