Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 42 of 106
Found at i:7526619 original size:31 final size:34
Alignment explanation
Indices: 7526576--7526649 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 34
7526566 CTTATAATAA
7526576 TTAATATT-TAATTAAAATAA-ATTAA-AAGTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
* * *
7526607 TTAAT-TTATAATTTAATTAATATTAATAATTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
7526640 TTAATATTAT
1 TTAATATTAT
7526650 TAACATAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 2 0.06
31 15 0.42
32 5 0.14
33 10 0.28
34 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (34 bp):
TTAATATTATAATTAAAATAATATTAATAAGTAC
Found at i:7526645 original size:17 final size:18
Alignment explanation
Indices: 7526604--7526648 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
7526594 AAATTAAAAG
7526604 TACTTAAT-TT-ATAATT
1 TACTTAATATTAATAATT
*
7526620 TAATTAATATTAATAA-T
1 TACTTAATATTAATAATT
7526637 TACTTAATATTA
1 TACTTAATATTA
7526649 TTAACATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TACTTAATATTAATAATT
Found at i:7526770 original size:17 final size:18
Alignment explanation
Indices: 7526748--7526887 Score: 56
Period size: 17 Copynumber: 8.1 Consensus size: 18
7526738 TATTATATAG
*
7526748 TTATATTATTAAT-TTAA
1 TTATATTAATAATATTAA
7526765 TTATA-TAATAATATTAA
1 TTATATTAATAATATTAA
*
7526782 TTTTATTAA-ACA-ATTGAA
1 TTATATTAATA-ATATT-AA
* *
7526800 TAATAGTT-AT-GTA-TAA
1 TTATA-TTAATAATATTAA
*
7526816 TT-TATCAAACTAATATTTAGA
1 TTATAT-TAA-TAATA-TTA-A
7526837 -TA-ATTAATAATATTAA
1 TTATATTAATAATATTAA
7526853 TTA-ATTAATTAATATCT-A
1 TTATATTAA-TAATAT-TAA
7526871 TTATATTAA-AA-ATTAA
1 TTATATTAATAATATTAA
7526887 T
1 T
7526888 AAGAATTTAT
Statistics
Matches: 94, Mismatches: 9, Indels: 41
0.65 0.06 0.28
Matches are distributed among these distances:
14 1 0.01
15 3 0.03
16 15 0.16
17 31 0.33
18 28 0.30
19 10 0.11
20 5 0.05
21 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
TTATATTAATAATATTAA
Found at i:7526884 original size:22 final size:21
Alignment explanation
Indices: 7526838--7526917 Score: 65
Period size: 22 Copynumber: 3.7 Consensus size: 21
7526828 ATATTTAGAT
*
7526838 AATTAATAATATTAATTAATT
1 AATTAATAATATTAATTAATA
*
7526859 AATTAATATCTATTATATTAA-A
1 AATTAATA-ATATTA-ATTAATA
* *
7526881 AATTAATAAGAATTTATTTAATA
1 AATTAATAA-TA-TTAATTAATA
*
7526904 TATTAATAA-ATTAA
1 AATTAATAATATTAA
7526918 GTATTTATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
20 3 0.06
21 9 0.19
22 18 0.38
23 17 0.36
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (21 bp):
AATTAATAATATTAATTAATA
Found at i:7527033 original size:18 final size:18
Alignment explanation
Indices: 7527010--7527044 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7527000 ATTATTCATA
*
7527010 ATTAATTGAATTATATAT
1 ATTAATTCAATTATATAT
*
7527028 ATTAATTCTATTATATA
1 ATTAATTCAATTATATA
7527045 CAAATTAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
ATTAATTCAATTATATAT
Found at i:7527356 original size:19 final size:20
Alignment explanation
Indices: 7527327--7527370 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
7527317 TAATTTATAT
*
7527327 TAATTATAATAGATA-ATACA
1 TAATTATAATACATAGATA-A
7527347 TAATTA-AATACATAGATAA
1 TAATTATAATACATAGATAA
7527366 TAATT
1 TAATT
7527371 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (20 bp):
TAATTATAATACATAGATAA
Found at i:7528197 original size:180 final size:179
Alignment explanation
Indices: 7527757--7528282 Score: 576
Period size: 180 Copynumber: 2.9 Consensus size: 179
7527747 AAATAATATT
* * * *
7527757 ATTTATTAATATTTCAAAAATTAATACGTAAAAGATTTAAAAAATAAATCTGTTTGCC-ATACTA
1 ATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCGA-ACAA
* * * * * **
7527821 GTTCAATTAGTTATAACTATTTGACCAAATATTTATTTTCAAATCGTTATGACCAATTGTTTTAT
65 GTTCAAATAATTATGACTATTTGAACAATTATTTA-TTTCAAATCGTTATGACCTTTTGTTTTAT
* * * *
7527886 CATAAAACAATTGTTTCTATTCATATAATCTTATTTGAAATAAAGTAATGCTA
129 CATAAAACAATTGTTTCTATTCATACAAGCTTATTAG-AATAAA-TAATTCTA
** * * *
7527939 ATTTATTAATATTTTGAAAATTAATAAGTAATG-GATTTAGAAAATGTATCT-TTTGGCTTG-AC
1 ATTTATTAATATTTCAAAAATTAATAAGTAA-GAGATTTAAAAAATGAATCTGTTT-GC-CGAAC
* * * *
7528001 CAGTTCAAACAATTATGACTATTTGAATAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTC
63 AAGTTCAAATAATTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTA
* *
7528066 TCACAAAACAATTGTTT-TGTTCATACAAGCTTATTCAGAATAACATAATTCTA
128 TCATAAAACAATTGTTTCTATTCATACAAGCTTATT-AGAATAA-ATAATTCTA
* * *
7528119 ATTTATTAATATTCCAAAAATTAATAAGTGAGAGATTTAAAAAATGAATCTGTTTACCGAACAAG
1 ATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCGAACAAG
* * * * * * * *
7528184 TTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTGTATTGTCA
66 TTCAAATAATTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTATCA
* *
7528249 TAAAATAATTTTTTTCTATTCATACAAGCTTATT
131 TAAAACAA-TTGTTTCTATTCATACAAGCTTATT
7528283 TCAAATTTGT
Statistics
Matches: 285, Mismatches: 48, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
179 2 0.01
180 136 0.48
181 54 0.19
182 93 0.33
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.41
Consensus pattern (179 bp):
ATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCGAACAAG
TTCAAATAATTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTATCA
TAAAACAATTGTTTCTATTCATACAAGCTTATTAGAATAAATAATTCTA
Found at i:7528598 original size:181 final size:181
Alignment explanation
Indices: 7528330--7528676 Score: 464
Period size: 181 Copynumber: 1.9 Consensus size: 181
7528320 CTATTGGAAC
* * *** * * ***
7528330 AATTATTTATTTCAAATCGTTATGACCATTTGTTTTGTCATAAAATAATTATTTTTGTTCATATT
1 AATTATCTATTTCAAATCATTATGACCATTTGTTTCACCATAAAACAATTATATCAATTCATATT
* * * *
7528395 AGCTTATTCGAATTAAAATAATATTAATTTATTAATATTTC-AACAATTAATAAGTAAAAGATTT
66 AGCTTATTCGAAATAAAATAATACTAACTTATTAATATTCCGAA-AATTAATAAGTAAAAGATTT
* *
7528459 AAAAAATAAATATGTGTACCGAACAAGTTCAAATAGTAATAATTATCTGAAT
130 AAAAAATAAATATATGTACCAAACAAGTTCAAATAGTAATAATTATCTGAAT
*
7528511 AATTATCTATTTCAAATCATTATGACCTTTTGTTTCACCATAAAACAATTATATCAATTCATA-T
1 AATTATCTATTTCAAATCATTATGACCATTTGTTTCACCATAAAACAATTATATCAATTCATATT
* * *
7528575 AGGCTTATTCGAAATAAAATAATACTAACTTATTACTATTCCGAAAATTAATGAGTAAGAGATTT
66 A-GCTTATTCGAAATAAAATAATACTAACTTATTAATATTCCGAAAATTAATAAGTAAAAGATTT
* *
7528640 AAAAAATAAATCTATTTACCAAACAAGTTCAAATAGT
130 AAAAAATAAATATATGTACCAAACAAGTTCAAATAGT
7528677 TATGACTATT
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
180 2 0.01
181 138 0.97
182 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (181 bp):
AATTATCTATTTCAAATCATTATGACCATTTGTTTCACCATAAAACAATTATATCAATTCATATT
AGCTTATTCGAAATAAAATAATACTAACTTATTAATATTCCGAAAATTAATAAGTAAAAGATTTA
AAAAATAAATATATGTACCAAACAAGTTCAAATAGTAATAATTATCTGAAT
Found at i:7528729 original size:22 final size:24
Alignment explanation
Indices: 7528703--7528748 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
7528693 TAAATAACTA
7528703 ATTTA-ATATTA-AGTATTAATAG
1 ATTTATATATTATAGTATTAATAG
*
7528725 ATTTATTATATTATATTATTAATA
1 ATTTA-TATATTATAGTATTAATA
7528749 ATACAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
24 6 0.30
25 9 0.45
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (24 bp):
ATTTATATATTATAGTATTAATAG
Found at i:7530731 original size:8 final size:8
Alignment explanation
Indices: 7530720--7530773 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
7530710 TATTTGTTTA
7530720 TTAATTAT
1 TTAATTAT
7530728 TTAATTAT
1 TTAATTAT
*
7530736 TT-ATTAA
1 TTAATTAT
7530743 TTAATT-T
1 TTAATTAT
7530750 TT-ATTAT
1 TTAATTAT
*
7530757 TATGATT-T
1 T-TAATTAT
7530765 TTAATTAT
1 TTAATTAT
7530773 T
1 T
7530774 AATAGTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
6 3 0.08
7 14 0.37
8 18 0.47
9 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (8 bp):
TTAATTAT
Found at i:7530735 original size:15 final size:15
Alignment explanation
Indices: 7530717--7530773 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
7530707 TTTTATTTGT
7530717 TTATTAATTATTTAA
1 TTATTAATTATTTAA
* *
7530732 TTATTTATTAATTAA
1 TTATTAATTATTTAA
* *
7530747 TT-TTTATTATTATGA
1 TTATTAATTATT-TAA
*
7530762 TTTTTAATTATT
1 TTATTAATTATT
7530774 AATAGTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 8 0.23
15 19 0.54
16 8 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATTAATTATTTAA
Found at i:7530738 original size:19 final size:19
Alignment explanation
Indices: 7530716--7530773 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
7530706 ATTTTATTTG
7530716 TTTATTAATTATTTAATTA
1 TTTATTAATTATTTAATTA
7530735 TTTATTAATTAATTT--TTA
1 TTTATTAATT-ATTTAATTA
7530753 -TTATTATGATT-TTTAATTA
1 TTTATTA--ATTATTTAATTA
7530772 TT
1 TT
7530774 AATAGTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
17 9 0.27
18 3 0.09
19 16 0.48
20 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATTAATTATTTAATTA
Found at i:7531268 original size:19 final size:18
Alignment explanation
Indices: 7531244--7531282 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
7531234 TGTTTGAAAT
7531244 ATTAATAATTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
7531263 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
7531281 AT
1 AT
7531283 AAAATAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:7531288 original size:19 final size:19
Alignment explanation
Indices: 7531247--7531300 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
7531237 TTGAAATATT
*
7531247 AATAATTAATATTTTAATT
1 AATAATTAATATTTTAATA
*
7531266 AATAATTTAT-TTTTAATAA
1 AATAATTAATATTTTAAT-A
7531285 AATAATGTTAATATTT
1 AATAA--TTAATATTT
7531301 GACTATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 7 0.25
19 14 0.50
21 4 0.14
22 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
AATAATTAATATTTTAATA
Found at i:7532168 original size:24 final size:24
Alignment explanation
Indices: 7532141--7532186 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7532131 TTTAATTATA
*
7532141 TATATAATATTAACTA-TTATTAAG
1 TATATAAT-TTAAATATTTATTAAG
*
7532165 TATATTATTTAAATATTTATTA
1 TATATAATTTAAATATTTATTA
7532187 CTATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TATATAATTTAAATATTTATTAAG
Found at i:7532202 original size:41 final size:40
Alignment explanation
Indices: 7532128--7532208 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 40
7532118 ATAATTATGT
* *
7532128 TTATTTAATTATATATATAATATTAACTATTATTAAGTATA
1 TTATTTAAATATATATATAATATTAAATATTATTAA-TATA
* *
7532169 TTATTTAAATATTTAT-TACTATTAAATATTTATTAATATA
1 TTATTTAAATATATATATAATATTAAATA-TTATTAATATA
7532209 CATAATTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 14 0.40
41 21 0.60
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (40 bp):
TTATTTAAATATATATATAATATTAAATATTATTAATATA
Found at i:7532474 original size:19 final size:17
Alignment explanation
Indices: 7532440--7532481 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
7532430 AGTATATTAT
7532440 AATTATTATATTAAATA
1 AATTATTATATTAAATA
*
7532457 AATTATTCATAGTTAAATT
1 AATTATT-ATA-TTAAATA
7532476 AATTAT
1 AATTAT
7532482 ATTAATTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 3 0.14
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
AATTATTATATTAAATA
Found at i:7532573 original size:15 final size:16
Alignment explanation
Indices: 7532548--7532578 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7532538 AATATATTTA
7532548 TTAATATTTATTAATT
1 TTAATATTTATTAATT
7532564 TTAA-ATTTATTAATT
1 TTAATATTTATTAATT
7532579 AATTATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATATTTATTAATT
Found at i:7532873 original size:19 final size:20
Alignment explanation
Indices: 7532849--7532894 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
7532839 TATCGGTAAT
7532849 AATAATATATCAAT-AT-TAA
1 AATAATATAT-AATAATATAA
7532868 AATAAT-TATAATAATATAA
1 AATAATATATAATAATATAA
*
7532887 GATAATAT
1 AATAATAT
7532895 TATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 3 0.13
18 5 0.22
19 14 0.61
20 1 0.04
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (20 bp):
AATAATATATAATAATATAA
Found at i:7533046 original size:19 final size:19
Alignment explanation
Indices: 7533018--7533058 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7533008 ATAATTTTCA
* *
7533018 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
7533037 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
7533056 AAA
1 AAA
7533059 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:7534059 original size:183 final size:181
Alignment explanation
Indices: 7533491--7534064 Score: 648
Period size: 183 Copynumber: 3.2 Consensus size: 181
7533481 TTAATAAGAC
* * * *
7533491 AATTAATAAGTAAAAGATTT-AAAAAATAAATCTATTTATCGAACAAATTCAAATCGCTATGACT
1 AATTAATAAGTAAAAGATTTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * * *
7533555 ATCTGAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTC
66 ATCTTAATAATTATCTATTTCAAA-TCATTATAAC-ATTTTATTTTGTCATAAAACAATTGTTTC
** * * * *
7533619 CGTCCATATAAGCTTA-TTCAAATTAAAATAATATTGATTTATTAATATTTCAAC
129 AATTCATTTAAGCTTATTTCAAA-TAAAATAATA-TAATTTATTAATATTTCAAA
* * * *
7533673 AATTAATAAGTAAAAGATTTAAAAAAAT-AA---GTTTACCAAACAAGTTCAAATAATCATGACT
1 AATTAATAAGTAAAAGATTTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * *
7533734 AT-TTGAATAATTATCTACTTCAAATCATTGTAACATTTTATTTTGTAATATAACAATTGTTTCA
66 ATCTT-AATAATTATCTATTTCAAATCATTATAACATTTTATTTTGTCATAAAACAATTGTTTCA
* *
7533798 ATTCATGTT-AGCTTATTTGAAATAAAAATAATACTAATTTATTAATATTCCAAA
130 ATTCAT-TTAAGCTTATTTCAAAT-AAAATAATA-TAATTTATTAATATTTCAAA
* * * *
7533852 AATTAAAAAGTAAGAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATAACT
1 AATTAATAAGTAAAAGATTTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * * *
7533917 ATCTTAATAATTATCTATTTCAAAACATTACAACGTTTTATTTTGTCATAAAACAATTGGTTCTA
66 ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTATTTTGTCATAAAACAATTGTTTCAA
* *
7533982 TTCATTTCAAGGTTATTTCAAATAAAATAATATAAATTTATTAATGTTTCAAA
131 TTCATTT-AAGCTTATTTCAAATAAAATAATAT-AATTTATTAATATTTCAAA
*
7534035 AATTAATAAGTAAAA-ATTT-TAAAAATAAAT
1 AATTAATAAGTAAAAGATTTAAAAAAATAAAT
7534065 TTATTTAAAA
Statistics
Matches: 327, Mismatches: 51, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
178 39 0.12
179 104 0.32
180 2 0.01
181 10 0.03
182 28 0.09
183 130 0.40
184 14 0.04
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (181 bp):
AATTAATAAGTAAAAGATTTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTATTTTGTCATAAAACAATTGTTTCAA
TTCATTTAAGCTTATTTCAAATAAAATAATATAATTTATTAATATTTCAAA
Found at i:7535082 original size:180 final size:178
Alignment explanation
Indices: 7534635--7535203 Score: 474
Period size: 180 Copynumber: 3.1 Consensus size: 178
7534625 AATGAATTTA
* * * *
7534635 TTTTT-AAAATTTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTATTCGAAAT
1 TTTTTAAAAAATTTTACTTATTAA-TTTTGAAATATTAATAAATTAATATTATTTTATTCG-AAT
* * * ** *
7534699 AATCTTGAATGAATAGAACCAATTGTTTTATGACAAAACAAAAGGTTGTAATGTTTTGAAATAGA
64 AAGCTAGAATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTACAATGATTTGAAATAGA
* * *
7534764 TAATTATTAAGATAGTCATAACTATTTGAATTTGTTCGATAAACAGATTTATT
129 TAATTATTAAGATAATCATAACTATTTGAACTTGTTAGATAAAC--A-TTATT
*** * * * * *
7534817 TTTTTAATTCA-CTTACTTTTTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAAT
1 TTTTTAAAAAATTTTACTTATTAATTTTGA-AATATTAATAAATTAATATTATTTTA-TTCGAAT
* * * *
7534881 AAGCTA-ACATGAATTGAAACAATTGTTTTTATTACAAAACAAAATGTTACAATGATTTGAAGTA
64 AAGCTAGA-ATGAATAGAAACAATTG-TTTTATGACAAAACAAAAGGTTACAATGATTTGAAATA
* *
7534945 GATAATTATTCAA-ATAATCATGACTATTTGAACTTGTTTAGGTAAAC-TTA-T
127 GATAATTATT-AAGATAATCATAACTATTTGAACTTG-TTAGATAAACATTATT
*
7534996 TTTTTAAAAAATTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATAT-GAA
1 TTTTTAAAAAATTTTACTTATTAATT-TTGAAATATTAATAAATTAATATTATTTT-AT-TCGAA
* * * * * * * * *
7535060 TAGGCTCGTATGGACAGAAACAATTGTTTTATGACAAAACAAAAAAGTCATAA-GAATTTAAAAT
63 TAAGCTAGAATGAATAGAAACAATTGTTTTATGACAAAAC-AAAAGGTTACAATG-ATTTGAAAT
* * * * * * * *
7535124 AAATAATTATTCAGATAGTCATAACGATTTAAATTTGTTCGATAAATAGATT-TAT
126 AGATAATTATTAAGATAATCATAACTATTTGAACTTGTTAGAT-AA-ACATTAT-T
**
7535179 TTTTT-AAATCTTTTACTTATTAATT
1 TTTTTAAAAAATTTTACTTATTAATT
7535204 GTCTTATTAA
Statistics
Matches: 307, Mismatches: 60, Indels: 40
0.75 0.15 0.10
Matches are distributed among these distances:
179 28 0.09
180 106 0.35
181 11 0.04
182 80 0.26
183 72 0.23
184 10 0.03
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (178 bp):
TTTTTAAAAAATTTTACTTATTAATTTTGAAATATTAATAAATTAATATTATTTTATTCGAATAA
GCTAGAATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTACAATGATTTGAAATAGATA
ATTATTAAGATAATCATAACTATTTGAACTTGTTAGATAAACATTATT
Found at i:7536164 original size:18 final size:18
Alignment explanation
Indices: 7536141--7536176 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7536131 AATTGTATAT
*
7536141 AATTAATTAATAAATTTA
1 AATTAATAAATAAATTTA
*
7536159 AATTAATAAATATATTTA
1 AATTAATAAATAAATTTA
7536177 TTCATTACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTAATAAATAAATTTA
Found at i:7536609 original size:26 final size:24
Alignment explanation
Indices: 7536580--7536647 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
7536570 TAATTAAACT
7536580 TTAATTAAATATAAATTAAATAATAG
1 TTAATTAAATATAAATTAAAT-A-AG
* * * *
7536606 TTAATTAGATATTAGTTTAATAAG
1 TTAATTAAATATAAATTAAATAAG
*
7536630 TTAATTAATTATATAATT
1 TTAATTAAATATA-AATT
7536648 GTTATATAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.36
25 4 0.12
26 17 0.52
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
TTAATTAAATATAAATTAAATAAG
Found at i:7536703 original size:22 final size:21
Alignment explanation
Indices: 7536677--7536725 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
7536667 ACAAAACTAT
7536677 TTAATATATAATAATTATAATA
1 TTAATATATAATAATTA-AATA
* * *
7536699 TTAATTTATAATTATTAACTA
1 TTAATATATAATAATTAAATA
7536720 TTAATA
1 TTAATA
7536726 ATGATAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATATATAATAATTAAATA
Found at i:7536822 original size:22 final size:22
Alignment explanation
Indices: 7536790--7536832 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7536780 TATAAGCAAT
*
7536790 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
7536812 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
7536833 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:7537047 original size:39 final size:37
Alignment explanation
Indices: 7536973--7537093 Score: 110
Period size: 39 Copynumber: 3.3 Consensus size: 37
7536963 TGTTATTAGT
*
7536973 AATAATAATATAATAATAATATTA-TT-AAT-TTATTAA
1 AATAATAAT-TAATAA-ATTATTATTTAAATATTATTAA
7537009 AATAATAATTAATAAATTGATTATTTAAATATTCATTAA
1 AATAATAATTAATAAATT-ATTATTTAAATATT-ATTAA
* * * *
7537048 AATAATTATTAAT-ATTTATAATTTAAATA-TA-TAT
1 AATAATAATTAATAAATTATTATTTAAATATTATTAA
7537082 AATAATTAATTA
1 AATAA-TAATTA
7537094 TTTTATTTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
34 9 0.12
35 16 0.22
36 12 0.16
37 14 0.19
38 5 0.07
39 17 0.23
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (37 bp):
AATAATAATTAATAAATTATTATTTAAATATTATTAA
Found at i:7537090 original size:31 final size:30
Alignment explanation
Indices: 7536979--7537113 Score: 94
Period size: 31 Copynumber: 4.3 Consensus size: 30
7536969 TAGTAATAAT
* * *
7536979 AATATAATAATAATATTATTAATTT-ATTAA
1 AATATAATAATAAT-TAATTATTTTAATTTA
* * *
7537009 AATAATAATTAATAAATTGATTATTTAAATATTC
1 AAT-ATAA-TAAT-AATTAATTATTTTAAT-TTA
* * *
7537043 ATTAAAATAATTATTAA-TATTTATAATTTA
1 AATATAATAATAATTAATTATTT-TAATTTA
*
7537073 AATATATATAATAATTAATTATTTTATTTTA
1 AATATA-ATAATAATTAATTATTTTAATTTA
*
7537104 ATTATAATAA
1 AATATAATAA
7537114 ATTATAATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
30 18 0.22
31 32 0.40
32 20 0.25
33 8 0.10
34 3 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (30 bp):
AATATAATAATAATTAATTATTTTAATTTA
Found at i:7537109 original size:27 final size:25
Alignment explanation
Indices: 7537083--7537135 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
7537073 AATATATATA
*
7537083 ATAATTAATTAT--TTTATTTTAATT
1 ATAATAAATTATAATTTA-TTTAATT
7537107 ATAATAAATTATAATTTATTTAATT
1 ATAATAAATTATAATTTATTTAATT
7537132 ATAA
1 ATAA
7537136 ATGAATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.42
25 11 0.42
26 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
ATAATAAATTATAATTTATTTAATT
Found at i:7537274 original size:13 final size:13
Alignment explanation
Indices: 7537256--7537299 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
7537246 AATATATTGT
7537256 AATTAATATTATA
1 AATTAATATTATA
7537269 AATTAATATTATA
1 AATTAATATTATA
*
7537282 ATTGTAA-ATTAT-
1 AAT-TAATATTATA
7537294 AATTAA
1 AATTAA
7537300 GATAATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 3 0.11
12 2 0.07
13 20 0.71
14 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
AATTAATATTATA
Found at i:7537286 original size:31 final size:30
Alignment explanation
Indices: 7537226--7537298 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 30
7537216 AAATTATTTA
* *
7537226 AATTAAATTATAAATATTGTAATATATTGT
1 AATTAAATTATAAATAATATAATATATTGT
*
7537256 AATTAATATTATAAATTAATATTATA-ATTGT
1 AATTAA-ATTATAAA-TAATATAATATATTGT
7537287 AAATTATAATTA
1 -AATTA-AATTA
7537299 AGATAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 6 0.17
31 13 0.36
32 16 0.44
33 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (30 bp):
AATTAAATTATAAATAATATAATATATTGT
Found at i:7537332 original size:16 final size:16
Alignment explanation
Indices: 7537307--7537355 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
7537297 TAAGATAATT
7537307 TTTAAATTAATTATAA
1 TTTAAATTAATTATAA
*
7537323 TTTAATTTAATTATAA
1 TTTAAATTAATTATAA
*
7537339 TTATATAATTATTTATA
1 TT-TA-AATTAATTATA
7537356 TTATAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 17 0.61
17 2 0.07
18 9 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTAAATTAATTATAA
Found at i:7537341 original size:22 final size:23
Alignment explanation
Indices: 7537261--7537362 Score: 70
Period size: 22 Copynumber: 4.4 Consensus size: 23
7537251 ATTGTAATTA
* *
7537261 ATATTATAAATTAATATTATAATTGT
1 ATATTAT-AATT-ATATAATTATT-T
* *
7537287 AAATTATAATTAAGATAATT-TTT
1 ATATTATAATT-ATATAATTATTT
* *
7537310 A-AAT-TAATTATA-ATTTAATTT
1 ATATTATAATTATATAATT-ATTT
7537331 A-ATTATAATTATATAATTATTT
1 ATATTATAATTATATAATTATTT
7537353 ATATTATAAT
1 ATATTATAAT
7537363 ATTATATATT
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
19 3 0.05
20 2 0.03
21 11 0.18
22 15 0.24
23 13 0.21
24 2 0.03
25 10 0.16
26 6 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATTATAATTATATAATTATTT
Found at i:7537368 original size:23 final size:24
Alignment explanation
Indices: 7537316--7537373 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 24
7537306 TTTTAAATTA
7537316 ATTATAATTTAATTTAATTATAAT
1 ATTATAATTTAATTTAATTATAAT
7537340 -TATATAA-TT-ATTTATATTATAAT
1 AT-TATAATTTAATTTA-ATTATAAT
7537363 ATTATATATTT
1 ATTATA-ATTT
7537374 GAACAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
22 5 0.17
23 15 0.52
24 7 0.24
25 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTATAATTTAATTTAATTATAAT
Found at i:7539142 original size:7 final size:7
Alignment explanation
Indices: 7539127--7539182 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
7539117 GAAAAATGAG
7539127 AAGAGAAA
1 AAGA-AAA
7539135 AAGAAAA
1 AAGAAAA
7539142 AAGGAAAA
1 AA-GAAAA
*
7539150 AA-AGAA
1 AAGAAAA
7539156 AAG-AAA
1 AAGAAAA
*
7539162 AAGGAAA
1 AAGAAAA
7539169 AAGAAAA
1 AAGAAAA
7539176 AATGAAA
1 AA-GAAA
7539183 GAATGGGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
6 10 0.24
7 16 0.39
8 15 0.37
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (7 bp):
AAGAAAA
Found at i:7539143 original size:8 final size:8
Alignment explanation
Indices: 7539127--7539182 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
7539117 GAAAAATGAG
*
7539127 AAGAGAAA
1 AAGAAAAA
7539135 AAGAAAAA
1 AAGAAAAA
*
7539143 AGGAAAAA
1 AAGAAAAA
7539151 AAGAAAAGA
1 AAGAAAA-A
7539160 AA-AAGGAAA
1 AAGAA--AAA
7539169 AAGAAAAA
1 AAGAAAAA
*
7539177 ATGAAA
1 AAGAAA
7539183 GAATGGGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 30 0.75
9 6 0.15
10 4 0.10
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:7539149 original size:27 final size:28
Alignment explanation
Indices: 7539118--7539184 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
7539108 CTAATGGATG
7539118 AAAAATGAGAAGAGAAAAAGAAAAAAGGA
1 AAAAATGAGAAGAGAAAAAGAAAAAA-GA
* *
7539147 AAAAA--AGAAAAGAAAAAGGAAAAAGA
1 AAAAATGAGAAGAGAAAAAGAAAAAAGA
7539173 AAAAATGA-AAGA
1 AAAAATGAGAAGA
7539185 ATGGGAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 7 0.21
27 20 0.61
28 1 0.03
29 5 0.15
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (28 bp):
AAAAATGAGAAGAGAAAAAGAAAAAAGA
Found at i:7539176 original size:13 final size:13
Alignment explanation
Indices: 7539130--7539176 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
7539120 AAATGAGAAG
7539130 AGAAAAAGAAAAA
1 AGAAAAAGAAAAA
7539143 AGGAAAAA-AAGAAA
1 A-GAAAAAGAA-AAA
*
7539157 AGAAAAAGGAAAA
1 AGAAAAAGAAAAA
7539170 AGAAAAA
1 AGAAAAA
7539177 ATGAAAGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AGAAAAAGAAAAA
Found at i:7540052 original size:63 final size:63
Alignment explanation
Indices: 7539964--7540189 Score: 283
Period size: 63 Copynumber: 3.6 Consensus size: 63
7539954 TTTATTATGG
* * *
7539964 AATGGCTAGTACTGAGAAGCCTATAAGTAGTGACCAAGTGATAAAAGATAGAATTTGTTCTGG
1 AATGGCTAGTGCTGAGAAGCCTATAAGTGGTGACCAAGTGATAAAAGATAGAATTTGTTCTGA
* * * *
7540027 AATGGCTAGTGCTGAGAAGCTTATAAGTGGTGACCAAGTGATAGAAGACAGAATTTGTTTTGA
1 AATGGCTAGTGCTGAGAAGCCTATAAGTGGTGACCAAGTGATAAAAGATAGAATTTGTTCTGA
* * * * * *
7540090 AATGGCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAATGATGAAGGAT-GAAATTTGTTCTGA
1 AATGGCTAGTGCTGAGAAGCCTATAAGTGGTGACCAAGTGATAAAAGATAG-AATTTGTTCTGA
* * * *
7540153 AATGGCTAGTGCTAAAAAGCCTATAAATGGTGTCCAA
1 AATGGCTAGTGCTGAGAAGCCTATAAGTGGTGACCAA
7540190 ATGCTGGAGG
Statistics
Matches: 140, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
62 1 0.01
63 139 0.99
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (63 bp):
AATGGCTAGTGCTGAGAAGCCTATAAGTGGTGACCAAGTGATAAAAGATAGAATTTGTTCTGA
Found at i:7540211 original size:63 final size:63
Alignment explanation
Indices: 7539964--7540239 Score: 255
Period size: 63 Copynumber: 4.4 Consensus size: 63
7539954 TTTATTATGG
* * * * ** * * * *
7539964 AATGGCTAGTACTGAGAAGCCTATAAGTAGTGACCAAGTGATAAAAGATAGAATTTGTTCTGG
1 AATGGCTAGTGCTAAGAAGCCTATAAGTGGTGACCAAATGATGGAGGACAAAATTTGTTCTGA
* * * * * * *
7540027 AATGGCTAGTGCTGAGAAGCTTATAAGTGGTGACCAAGTGATAGAAGACAGAATTTGTTTTGA
1 AATGGCTAGTGCTAAGAAGCCTATAAGTGGTGACCAAATGATGGAGGACAAAATTTGTTCTGA
* * * **
7540090 AATGGCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAATGATGAAGGATGAAATTTGTTCTGA
1 AATGGCTAGTGCTAAGAAGCCTATAAGTGGTGACCAAATGATGGAGGACAAAATTTGTTCTGA
* * * * * *
7540153 AATGGCTAGTGCTAAAAAGCCTATAAATGGTGTCCAAATGCTGGAGGACAAAACTTGTTTTGA
1 AATGGCTAGTGCTAAGAAGCCTATAAGTGGTGACCAAATGATGGAGGACAAAATTTGTTCTGA
* * * * *
7540216 ACTTGCTAATGTTGAGAAGCCTAT
1 AATGGCTAGTGCTAAGAAGCCTAT
7540240 GAATGATGAT
Statistics
Matches: 177, Mismatches: 36, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 177 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (63 bp):
AATGGCTAGTGCTAAGAAGCCTATAAGTGGTGACCAAATGATGGAGGACAAAATTTGTTCTGA
Found at i:7540234 original size:126 final size:126
Alignment explanation
Indices: 7539964--7540261 Score: 328
Period size: 126 Copynumber: 2.4 Consensus size: 126
7539954 TTTATTATGG
* * * * * *
7539964 AATGGCTAGTACTGAGAAGCCTATAAGTAGTGACCAAGTGATAAAAGATAGAATTTGTTCTGGAA
1 AATGGCTAATGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGAAAGATAGAATTTGTTCTGAAA
* * * * * * *
7540029 TGGCTAGTGCTGAGAAGCTTATAAGTGGTGACCAAGTGATAGAAGACAGAATTTGTTTTGA
66 TGGCTAGTGCTAAAAAGCCTATAAATGGTGACCAAATGATAGAAGACAAAACTTGTTTTGA
* * * * *
7540090 AATGGCTAGTGCTAAGAAGCCTGTGAGTGGTGACCAAATGATGAAGGAT-GAAATTTGTTCTGAA
1 AATGGCTAATGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGAAAGATAG-AATTTGTTCTGAA
* * * *
7540154 ATGGCTAGTGCTAAAAAGCCTATAAATGGTGTCCAAATGCTGGAGGACAAAACTTGTTTTGA
65 ATGGCTAGTGCTAAAAAGCCTATAAATGGTGACCAAATGATAGAAGACAAAACTTGTTTTGA
* * * * * *
7540216 ACTTGCTAATGTTGAGAAGCCTATGAATGATGATCAAGTGATGAAA
1 AATGGCTAATGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGAAA
7540262 ATGATGAGGA
Statistics
Matches: 140, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
125 1 0.01
126 139 0.99
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.28
Consensus pattern (126 bp):
AATGGCTAATGCTGAGAAGCCTATGAGTGGTGACCAAGTGATGAAAGATAGAATTTGTTCTGAAA
TGGCTAGTGCTAAAAAGCCTATAAATGGTGACCAAATGATAGAAGACAAAACTTGTTTTGA
Found at i:7540715 original size:46 final size:46
Alignment explanation
Indices: 7540658--7540839 Score: 208
Period size: 46 Copynumber: 4.0 Consensus size: 46
7540648 TTGTGAACCC
* * *
7540658 TCAAATGAGAATCTTTGAGTCACAAAAGAAAATCTTTAAGAAATCT
1 TCAAATGAGAATATTTGAGTCATAAAAGAGAATCTTTAAGAAATCT
* * *
7540704 TCAAATAAGAATCTTTGAGTCTTAAATA-AGAATCTTTAAGAAATCT
1 TCAAATGAGAATATTTGAGTCATAAA-AGAGAATCTTTAAGAAATCT
* * *
7540750 TCAAATGAGAATATTTGACT-ATTAAATGAGAATTTTTAAGAAATCT
1 TCAAATGAGAATATTTGAGTCA-TAAAAGAGAATCTTTAAGAAATCT
* * *
7540796 TCAAATGAGAATATTTGACT-ATTAAATGAGAATTTTTAAGAAAT
1 TCAAATGAGAATATTTGAGTCA-TAAAAGAGAATCTTTAAGAAAT
7540840 ACCAAAAAAA
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
46 122 0.99
47 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (46 bp):
TCAAATGAGAATATTTGAGTCATAAAAGAGAATCTTTAAGAAATCT
Found at i:7540759 original size:92 final size:92
Alignment explanation
Indices: 7540658--7540839 Score: 240
Period size: 92 Copynumber: 2.0 Consensus size: 92
7540648 TTGTGAACCC
* * *
7540658 TCAAATGAGAATCTTTGAGTCA-CAAAAGAAAATCTTTAAGAAATCTTCAAATAAGAATCTTTGA
1 TCAAATGAGAATATTTGACT-ATCAAAAGAAAATCTTTAAGAAATCTTCAAATAAGAATATTTGA
* *
7540722 GTCTTAAATAAGAATCTTTAAGAAATCT
65 CTATTAAATAAGAATCTTTAAGAAATCT
* * * * *
7540750 TCAAATGAGAATATTTGACTATTAAATGAGAATTTTTAAGAAATCTTCAAATGAGAATATTTGAC
1 TCAAATGAGAATATTTGACTATCAAAAGAAAATCTTTAAGAAATCTTCAAATAAGAATATTTGAC
* *
7540815 TATTAAATGAGAATTTTTAAGAAAT
66 TATTAAATAAGAATCTTTAAGAAAT
7540840 ACCAAAAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
91 1 0.01
92 76 0.99
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (92 bp):
TCAAATGAGAATATTTGACTATCAAAAGAAAATCTTTAAGAAATCTTCAAATAAGAATATTTGAC
TATTAAATAAGAATCTTTAAGAAATCT
Found at i:7540778 original size:21 final size:21
Alignment explanation
Indices: 7540752--7540828 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 21
7540742 AGAAATCTTC
7540752 AAATGAGAATATTTGACTATT
1 AAATGAGAATATTTGACTATT
* * *
7540773 AAATGAGAATTTTTAAGAAATCTT
1 AAATGAGAATATTT--G-ACTATT
7540797 CAAATGAGAATATTTGACTATT
1 -AAATGAGAATATTTGACTATT
7540819 AAATGAGAAT
1 AAATGAGAAT
7540829 TTTTAAGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 23 0.50
22 4 0.09
23 2 0.04
24 4 0.09
25 13 0.28
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.35
Consensus pattern (21 bp):
AAATGAGAATATTTGACTATT
Found at i:7541411 original size:19 final size:19
Alignment explanation
Indices: 7541363--7541435 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 19
7541353 ATTTAGATTA
7541363 ATAAT-ATTATAATT-ATT
1 ATAATAATTATAATTAATT
* *
7541380 A-ATTAAATATAATTAATT
1 ATAATAATTATAATTAATT
*
7541398 ATAATGATTATAATTAA-T
1 ATAATAATTATAATTAATT
*
7541416 A-GATAATTAT-ATTAATT
1 ATAATAATTATAATTAATT
7541433 ATA
1 ATA
7541436 TTGGATTAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
16 7 0.16
17 18 0.42
18 6 0.14
19 12 0.28
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATAATAATTATAATTAATT
Found at i:7541433 original size:9 final size:9
Alignment explanation
Indices: 7541341--7541485 Score: 60
Period size: 9 Copynumber: 16.6 Consensus size: 9
7541331 CCAAAATTTT
7541341 TATTAATTA
1 TATTAATTA
*
7541350 -ATTATTTA
1 TATTAATTA
* *
7541358 GATTAATAA
1 TATTAATTA
7541367 TATT-A-TA
1 TATTAATTA
7541374 -ATT-ATTA
1 TATTAATTA
*
7541381 -ATTAAATA
1 TATTAATTA
7541389 TAATTAATTA
1 T-ATTAATTA
* *
7541399 TAATGATTA
1 TATTAATTA
7541408 TAATTAA-TA
1 T-ATTAATTA
*
7541417 GA-TAATTA
1 TATTAATTA
7541425 TATTAATTA
1 TATTAATTA
*
7541434 TATTGGATTAA
1 TATT-AATT-A
7541445 TATTATATT-
1 TATTA-ATTA
*
7541454 TATTATAATA
1 TATTA-ATTA
7541464 TAATTAA-TA
1 T-ATTAATTA
*
7541473 TATTTATT-
1 TATTAATTA
7541481 TATTA
1 TATTA
7541486 CTTAAAATTA
Statistics
Matches: 104, Mismatches: 18, Indels: 29
0.69 0.12 0.19
Matches are distributed among these distances:
6 4 0.04
7 9 0.09
8 23 0.22
9 40 0.38
10 16 0.15
11 12 0.12
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (9 bp):
TATTAATTA
Found at i:7541443 original size:36 final size:36
Alignment explanation
Indices: 7541363--7541471 Score: 100
Period size: 36 Copynumber: 3.0 Consensus size: 36
7541353 ATTTAGATTA
*
7541363 ATAAT-ATTATAATTATTAATTAAATATAATTAATT
1 ATAATGATTATAATTAATAATTAAATATAATTAATT
*
7541398 ATAATGATTATAATTAATAGA-TAATTAT-ATTAATT
1 ATAATGATTATAATTAATA-ATTAAATATAATTAATT
* *
7541433 ATATTGGATTA-ATATTATATTTATTATAATATAATTAAT
1 ATAAT-GATTATA-ATTA-A-TAATTA-AATATAATTAAT
7541472 ATATTTATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
35 17 0.28
36 27 0.45
37 3 0.05
38 3 0.05
39 4 0.07
40 6 0.10
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.49
Consensus pattern (36 bp):
ATAATGATTATAATTAATAATTAAATATAATTAATT
Found at i:7541478 original size:23 final size:23
Alignment explanation
Indices: 7541344--7541480 Score: 70
Period size: 23 Copynumber: 5.7 Consensus size: 23
7541334 AAATTTTTAT
7541344 TAATTAAT-TATTTAGATTAATAATA
1 TAATTAATATATTT--ATT-ATAATA
* *
7541369 TTA-TAAT-TATTAATTA-AATA
1 TAATTAATATATTTATTATAATA
* *
7541389 TAATTAATTATAATGATTATAAT-
1 TAATTAA-TATATTTATTATAATA
* *
7541412 TAATAGATAATTATATTAATTATATTGGA
1 TAAT---TAA-TATATTTATTATAAT--A
*
7541441 TTAA-TATTATATTTATTATAATA
1 -TAATTAATATATTTATTATAATA
7541464 TAATTAATATATTTATT
1 TAATTAATATATTTATT
7541481 TATTACTTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 26
0.70 0.10 0.21
Matches are distributed among these distances:
20 6 0.07
21 4 0.05
22 7 0.08
23 24 0.27
24 11 0.12
25 15 0.17
26 18 0.20
30 3 0.03
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
TAATTAATATATTTATTATAATA
Found at i:7541494 original size:26 final size:25
Alignment explanation
Indices: 7541421--7541498 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
7541411 TTAATAGATA
* ***
7541421 ATTATATTAATTATATTGGATTAAT
1 ATTATATTTATTATATAAAATTAAT
*
7541446 ATTATATTTATTATAATATAATTAAT
1 ATTATATTTATTAT-ATAAAATTAAT
*
7541472 ATATTTATTTATTACT-TAAAATTAAT
1 AT-TATATTTATTA-TATAAAATTAAT
7541498 A
1 A
7541499 AATTATTATT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
25 13 0.30
26 20 0.45
27 10 0.23
28 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.53
Consensus pattern (25 bp):
ATTATATTTATTATATAAAATTAAT
Found at i:7541641 original size:22 final size:21
Alignment explanation
Indices: 7541614--7541659 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
7541604 AATAGGATTA
*
7541614 TTATAAATATTAATCATAATAT
1 TTATAAATATAAAT-ATAATAT
*
7541636 TTATAAATATAAATATTATAT
1 TTATAAATATAAATATAATAT
7541657 TTA
1 TTA
7541660 AATAGTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TTATAAATATAAATATAATAT
Found at i:7542515 original size:14 final size:14
Alignment explanation
Indices: 7542496--7542522 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7542486 ATAATAGTTT
7542496 ATTAATTATATTTG
1 ATTAATTATATTTG
7542510 ATTAATTATATTT
1 ATTAATTATATTT
7542523 TAATTAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
ATTAATTATATTTG
Found at i:7543104 original size:25 final size:26
Alignment explanation
Indices: 7543063--7543117 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
7543053 TTAAATACTA
* *
7543063 TATT-TAATTATATTTATAATTATAT
1 TATTATAAATATATTTATAATGATAT
7543088 TATTATAAATATA-TTATAATGATAT
1 TATTATAAATATATTTATAATGATAT
*
7543113 AATTA
1 TATTA
7543118 ATAACAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TATTATAAATATATTTATAATGATAT
Found at i:7543208 original size:17 final size:17
Alignment explanation
Indices: 7543123--7543343 Score: 86
Period size: 17 Copynumber: 13.2 Consensus size: 17
7543113 AATTAATAAC
7543123 AATTA-AATAAGTAT-TT
1 AATTATAATAA-TATATT
*
7543139 AATTATGATAA-ATATTT
1 AATTATAATAATATA-TT
7543156 AATTATAATTAAT-T-TT
1 AATTATAA-TAATATATT
*
7543172 -A-TATGAATAAT-TAAT
1 AATTAT-AATAATATATT
7543187 AATTATAATAATATATT
1 AATTATAATAATATATT
7543204 AATTAT-AT--T-TATT
1 AATTATAATAATATATT
7543217 -ATTATAATAA-ATTATT
1 AATTATAATAATA-TATT
*
7543233 AATATATAAATTAAAATATT
1 AAT-TAT-AA-TAATATATT
7543253 AAAATTTATAAATAATACTAATT
1 --AA-TTAT-AATAATA-T-ATT
*
7543276 AATTATAATAAT-TAAAT
1 AATTATAATAATAT-ATT
7543293 AATTAT--TAATATA-T
1 AATTATAATAATATATT
*
7543307 AATAATAAATAA-ATATT
1 AATTAT-AATAATATATT
* *
7543324 TATT-TTATAATATCATT
1 AATTATAATAATAT-ATT
7543341 AAT
1 AAT
7543344 AAATTAATTT
Statistics
Matches: 162, Mismatches: 11, Indels: 63
0.69 0.05 0.27
Matches are distributed among these distances:
12 5 0.03
13 6 0.04
14 15 0.09
15 15 0.09
16 27 0.17
17 48 0.30
18 7 0.04
19 8 0.05
20 11 0.07
21 7 0.04
22 9 0.06
23 4 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (17 bp):
AATTATAATAATATATT
Found at i:7543209 original size:48 final size:49
Alignment explanation
Indices: 7543138--7543236 Score: 123
Period size: 48 Copynumber: 2.0 Consensus size: 49
7543128 AATAAGTATT
* *
7543138 TAATTATGATAAATATTTAATTATAATTAATT-TTAT-ATGAATAATTAA
1 TAATTATAATAAATATTTAATTAT-ATTAATTATTATAATAAATAATTAA
* *
7543186 TAATTATAAT-AATATATTAATTATATTTATTATTATAATAAATTATTAA
1 TAATTATAATAAATAT-TTAATTATATTAATTATTATAATAAATAATTAA
7543235 TA
1 TA
7543237 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
47 11 0.25
48 21 0.48
49 12 0.27
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (49 bp):
TAATTATAATAAATATTTAATTATATTAATTATTATAATAAATAATTAA
Found at i:7543254 original size:49 final size:48
Alignment explanation
Indices: 7543138--7543254 Score: 116
Period size: 49 Copynumber: 2.4 Consensus size: 48
7543128 AATAAGTATT
* *
7543138 TAATTATGAT-AAATATTTAATTATAATTAATTTTATATGAATAATTAA
1 TAATTATAATAAAATA-TTAATTATAATTAATTTTATATAAATAATTAA
* * *
7543186 TAATTATAATAATATATTAATTAT-ATTTATTATTATAATAAATTATTAA
1 TAATTATAATAAAATATTAATTATAATTAATT-TTAT-ATAAATAATTAA
7543235 T-A-TATAAATTAAAATATTAA
1 TAATTAT-AA-TAAAATATTAA
7543255 AATTTATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
47 9 0.16
48 24 0.41
49 25 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (48 bp):
TAATTATAATAAAATATTAATTATAATTAATTTTATATAAATAATTAA
Found at i:7543301 original size:116 final size:111
Alignment explanation
Indices: 7543154--7543369 Score: 249
Period size: 108 Copynumber: 1.9 Consensus size: 111
7543144 TGATAAATAT
* *
7543154 TTAATTATAATTAATTTTATATGAATAATTAATAATTATAATAATATATTAATTATATTTATTAT
1 TTAATTATAATTAA-TTTAAATGAATAATTAAT-A-TATAATAATA-AATAA--ATATTTATT-T
* *
7543219 TATAATAAATTATTAATATATAAATTAAAATATTAAAATTTATAAATAATACTAA
59 TATAAT--ATCATTAATAAATAAATTAAAATATTAAAATTTATAAATAATACTAA
*
7543274 TTAATTATAA-TAA-TTAAAT-AATTATTAATATATAATAATAAATAAATATTTATTTTATAATA
1 TTAATTATAATTAATTTAAATGAATAATTAATATATAATAATAAATAAATATTTATTTTATAATA
* * * *
7543336 TCATTAATAAATTAATTTATATATTAATATTTAT
66 TCATTAATAAATAAATTAAAATATTAAAATTTAT
7543370 TTTTATTATA
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
108 29 0.33
110 7 0.08
111 9 0.10
113 4 0.05
114 10 0.11
115 1 0.01
116 9 0.10
117 5 0.06
119 3 0.03
120 10 0.11
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (111 bp):
TTAATTATAATTAATTTAAATGAATAATTAATATATAATAATAAATAAATATTTATTTTATAATA
TCATTAATAAATAAATTAAAATATTAAAATTTATAAATAATACTAA
Found at i:7543332 original size:25 final size:25
Alignment explanation
Indices: 7543273--7543356 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 25
7543263 AATAATACTA
*
7543273 ATTAA-TTATAATAATTAAATAATT
1 ATTAATTTATAATAATTAAATAAAT
*
7543297 ATTAATATATAATAA-TAAATAAAT
1 ATTAATTTATAATAATTAAATAAAT
*
7543321 ATTTATTTTATAATATCATT-AAT-AA-
1 A-TTAATTTATAATA--ATTAAATAAAT
7543346 ATTAATTTATA
1 ATTAATTTATA
7543357 TATTAATATT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
24 23 0.46
25 20 0.40
26 2 0.04
27 4 0.08
28 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTAATTTATAATAATTAAATAAAT
Found at i:7543449 original size:14 final size:14
Alignment explanation
Indices: 7543427--7543463 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
7543417 ATATACCAAT
7543427 AATTATATATAAATTA
1 AATTATATAT-AA-TA
7543443 AATTATATATAATA
1 AATTATATATAATA
7543457 AATTATA
1 AATTATA
7543464 ATATTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 9 0.43
15 2 0.10
16 10 0.48
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATATATAATA
Found at i:7543604 original size:23 final size:22
Alignment explanation
Indices: 7543570--7543612 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
7543560 GAATTTTAAT
7543570 AATTAAAGTTATCAGATATTATA
1 AATTAAAGTTATCAG-TATTATA
*
7543593 AATTAATA-TTATTAGTATTA
1 AATTAA-AGTTATCAGTATTA
7543613 GAATAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 5 0.28
23 12 0.67
24 1 0.06
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
AATTAAAGTTATCAGTATTATA
Found at i:7543730 original size:17 final size:16
Alignment explanation
Indices: 7543692--7543737 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 16
7543682 TATTAATATA
7543692 ATAAATTATTATAA-TT
1 ATAAA-TATTATAATTT
7543708 AT-AATATTATAATTT
1 ATAAATATTATAATTT
7543723 AGTAAATATT-TAATT
1 A-TAAATATTATAATT
7543738 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 8 0.30
15 5 0.19
16 8 0.30
17 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATAAATATTATAATTT
Found at i:7543757 original size:12 final size:12
Alignment explanation
Indices: 7543652--7543797 Score: 60
Period size: 12 Copynumber: 12.2 Consensus size: 12
7543642 TTACTAAATC
7543652 TTATAA-AATTAA
1 TTATAATAATT-A
*
7543664 TAATAAT-ATGTA
1 TTATAATAAT-TA
*
7543676 TTATTAT-ATTA
1 TTATAATAATTA
*
7543687 ATATAATAAATTA
1 TTATAAT-AATTA
*
7543700 TTATAATTATAATA
1 TTATAA-TA-ATTA
7543714 TTATAAT--TTA
1 TTATAATAATTA
* *
7543724 GTA-AATATTTAA
1 TTATAATAATT-A
7543736 TTA-AAT-ATTA
1 TTATAATAATTA
7543746 TTATAATAATTA
1 TTATAATAATTA
7543758 TTAGTTAATAATTGA
1 TTA--TAATAATT-A
*
7543773 -TATAAAAATTA
1 TTATAATAATTA
*
7543784 AT-TAATAAATTA
1 TTATAAT-AATTA
7543796 TT
1 TT
7543798 TTTTTTGAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 32
0.69 0.09 0.21
Matches are distributed among these distances:
9 3 0.03
10 8 0.08
11 18 0.17
12 42 0.40
13 12 0.12
14 20 0.19
15 1 0.01
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TTATAATAATTA
Found at i:7544386 original size:180 final size:177
Alignment explanation
Indices: 7543834--7544733 Score: 684
Period size: 180 Copynumber: 5.0 Consensus size: 177
7543824 AAACCAATTG
* *** ** * * **
7543834 TTTTATGACAAAACATAAAGTCATAATGTTTTGTGATAGATAATTGTTCAGATAGTCATAACCAT
1 TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTAT
* * * * * ** * *
7543899 TTGAACTTATTCAGTAAAAAAATTCTTTTTTTTTAATTCTCCTACTCATTGATTTTTAGAATATT
66 TTGAACTTGTTCAGTAAACATA-T-TTATTTTTTAAATCTTTTACTTATT-AATTTT--AATATT
* * *
7543964 AATAAATTAGTATTATTTTACTTCAGATAAGCTTGTATGAACT-G-AAATAATTC
126 AATAAATTAGTATTATTTTA-TTCAAATAAGCTTGTATGAA-TAGAAAAT-TTTA
* * * * * * * * * *
7544017 TTTTATTATAAAA-AAAATGTCATAATAATTTGAAATAGATAATTATTTAAATGGTCATCACTAT
1 TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTAT
7544081 TTGAACTTGTTTC-GTAAACATATTTATTTTTTAAATCTTTTACTTATTAA----AATATTAATA
66 TTGAACTTG-TTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTAATATTAATA
* * * * * * *
7544141 AATTAATATTATTTTAATCTGAATAAACTTGTATGAACAGAAACA-ATTG
130 AATTAGTATTATTTTATTC-AAATAAGCTTGTATGAATAGAAA-ATTTTA
* * * * *
7544190 TTTTATGATAAAACAAAAAGTCATAGCAAGTTGAAATAAATAATTGCTT-AAATAGCCATAATGA
1 TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTG-TTCAAATAGTCATAATTA
7544254 TTTGAACTTGTTCAGTAAACA-ATTT-TATTTTTAAATCTTTTACTTATTAATTGTCTTAATATT
65 TTTGAACTTGTTCAGTAAACATATTTAT-TTTTTAAATCTTTTACTTATTAA-T-T-TTAATATT
7544317 AATAAATTTA-TATTATTTTATTCAAAATAAGCTTGTATGAATAGAAAATTTTA
126 AATAAA-TTAGTATTATTTTATTC-AAATAAGCTTGTATGAATAGAAAATTTTA
* * * * *** * *
7544370 TTTTTTGACCAAACAAAAGGTTATAGTGATTTCAAATAAATAATTGTTCAAATAATCATAATTAT
1 TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTAT
* * ** * *
7544435 TTAAAATTGTTCAGTAAACGGATTCATTTTTTAAATCTTTTTA-TCATTAATTTTTAGATTATTA
66 TTGAACTTGTTCAGTAAACATATTTATTTTTTAAATC-TTTTACTTATTAA-TTTTA-A-TATTA
* * * * *
7544499 GTAAATTAGTATTAATTTATTTCGAATAAGCTTATATGAACT-GAACAA--TTC
127 ATAAATTAGTATTATTTTA-TTCAAATAAGCTTGTATGAA-TAGAA-AATTTTA
* * * * *
7544550 TTTTATGACAAAACAGAAAGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATGATTAT
1 TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTAT
* * * * *
7544615 TTGATCTAGTTCAGTAAACATATTTATTTTTAAAAT-TTTTACTTATTAATTGTCAATATATTAG
66 TTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATT-T-TA-ATATTAA
* * * * **
7544679 TAAATTAGTATTAGTTTAATCCAAAAAAGCTTTGTATGAACAGATTATTTTA
128 TAAATTAGTATTA-TTTTATTCAAATAAGC-TTGTATGAATAGAAAATTTTA
7544731 TTT
1 TTT
7544734 CGAATAAGCT
Statistics
Matches: 577, Mismatches: 104, Indels: 74
0.76 0.14 0.10
Matches are distributed among these distances:
172 3 0.01
173 85 0.15
174 55 0.10
175 3 0.01
178 7 0.01
179 42 0.07
180 236 0.41
181 66 0.11
182 66 0.11
183 14 0.02
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (177 bp):
TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTAT
TTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTAATATTAATAA
ATTAGTATTATTTTATTCAAATAAGCTTGTATGAATAGAAAATTTTA
Found at i:7545374 original size:41 final size:42
Alignment explanation
Indices: 7545329--7545427 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 42
7545319 TTTCAATTAG
*
7545329 TATAAACAATTATAATTAAT-TGTTATATAGTATTATA-ATAA
1 TATAAATAATTATAATTAATATGTTATATA-TATTATAGATAA
* * * *
7545370 TATAAATACTT-TATATTAATATTTTTTTTATATTATAGATAA
1 TATAAATAATTATA-ATTAATATGTTATATATATTATAGATAA
7545412 TATAATATAATTATAA
1 TATAA-ATAATTATAA
7545428 ATTATGAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
40 2 0.04
41 22 0.47
42 15 0.32
43 6 0.13
44 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (42 bp):
TATAAATAATTATAATTAATATGTTATATATATTATAGATAA
Found at i:7545468 original size:10 final size:10
Alignment explanation
Indices: 7545453--7545486 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7545443 TAAGTTATAA
7545453 TAATTAAATT
1 TAATTAAATT
7545463 TAATTATAATT
1 TAATTA-AATT
*
7545474 TAAATAAATT
1 TAATTAAATT
7545484 TAA
1 TAA
7545487 ATTTATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATTAAATT
Found at i:7545497 original size:21 final size:20
Alignment explanation
Indices: 7545447--7545497 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
7545437 TATTTCTAAG
* *
7545447 TTATAATAATTAAATTT-AA
1 TTATATTAAATAAATTTAAA
7545466 TTATAATTTAAATAAATTTAAA
1 TTAT-A-TTAAATAAATTTAAA
7545488 TTTATATTAA
1 -TTATATTAA
7545498 TAATTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 14 0.54
22 3 0.12
23 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATATTAAATAAATTTAAA
Found at i:7546613 original size:32 final size:33
Alignment explanation
Indices: 7546562--7546648 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 33
7546552 TTATTAAGCT
*
7546562 AATATCTAATACTTAATTAATTAATTTAATT-ATG
1 AATATCTAATA-AT-ATTAATTAATTTAATTAATG
* *
7546596 AATAAT-TAATAATATTAAAT-ATTTAATTAATT
1 AAT-ATCTAATAATATTAATTAATTTAATTAATG
*
7546628 AATATCTAATAATTTTAATTA
1 AATATCTAATAATATTAATTA
7546649 GCTTCGAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
31 10 0.23
32 23 0.52
33 1 0.02
34 8 0.18
35 2 0.05
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.47
Consensus pattern (33 bp):
AATATCTAATAATATTAATTAATTTAATTAATG
Found at i:7546731 original size:34 final size:34
Alignment explanation
Indices: 7546693--7546789 Score: 98
Period size: 30 Copynumber: 3.0 Consensus size: 34
7546683 ATGTTATAAA
* *
7546693 TAATATAATATTAATTTTAAGTTAACTAATTTAT
1 TAATATAATATTAATTTTAAATTAACTAATTAAT
* *
7546727 TAATATAATA--AATATT-ATTTAA-TAATTAAT
1 TAATATAATATTAATTTTAAATTAACTAATTAAT
* *
7546757 TAATATTATATT-ATTATAAATTAACTAA-TAAT
1 TAATATAATATTAATTTTAAATTAACTAATTAAT
7546789 T
1 T
7546790 TTTAATATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
30 16 0.31
31 8 0.15
32 15 0.29
33 3 0.06
34 10 0.19
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (34 bp):
TAATATAATATTAATTTTAAATTAACTAATTAAT
Found at i:7546761 original size:21 final size:21
Alignment explanation
Indices: 7546721--7546796 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 21
7546711 AAGTTAACTA
* *
7546721 ATTTATTAATATAATAAATATT
1 ATTTAATAAT-TAATTAATATT
7546743 ATTTAATAATTAATTAATATT
1 ATTTAATAATTAATTAATATT
*
7546764 ATATTATTATAAATTAACTAATAATT
1 AT-TTA--AT-AATTAATTAAT-ATT
7546790 -TTTAATA
1 ATTTAATA
7546797 TTACTATTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
21 13 0.28
22 14 0.30
24 5 0.11
25 11 0.24
26 3 0.07
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTAATAATTAATTAATATT
Found at i:7546778 original size:25 final size:25
Alignment explanation
Indices: 7546725--7546787 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
7546715 TAACTAATTT
7546725 ATTAATATAATAAATATTATTTAATA
1 ATTAAT-TAATAAATATTATTTAATA
*
7546751 ATTAATTAATATTATATTA-TT-ATAA
1 ATTAATTAATA-AATATTATTTAAT-A
*
7546776 ATTAACTAATAA
1 ATTAATTAATAA
7546788 TTTTTAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
24 2 0.06
25 18 0.56
26 12 0.38
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTAATTAATAAATATTATTTAATA
Found at i:7547531 original size:13 final size:13
Alignment explanation
Indices: 7547513--7547556 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
7547503 CTAATCTGTA
7547513 TATTAATATAAAT
1 TATTAATATAAAT
*
7547526 TATTAATATATAT
1 TATTAATATAAAT
*
7547539 TATGGAATATGAAAT
1 TAT-TAATAT-AAAT
7547554 TAT
1 TAT
7547557 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:7547615 original size:6 final size:6
Alignment explanation
Indices: 7547604--7547649 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
7547594 AGTTATATTT
7547604 TATTAA TATTAAA TAATTAA TATTAA TATTAA TA-T-A TATTAA -ATTA
1 TATTAA TATT-AA T-ATTAA TATTAA TATTAA TATTAA TATTAA TATTA
7547650 GTTTTATAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
4 3 0.08
5 6 0.17
6 18 0.50
7 6 0.17
8 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TATTAA
Found at i:7547624 original size:14 final size:12
Alignment explanation
Indices: 7547604--7547649 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 12
7547594 AGTTATATTT
7547604 TATTAATATTAAA
1 TATTAATATT-AA
7547617 TAATTAATATTAA
1 T-ATTAATATTAA
7547630 TATTAATA-T-A
1 TATTAATATTAA
7547640 TATTAA-ATTA
1 TATTAATATTA
7547650 GTTTTATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.03
10 8 0.27
11 1 0.03
12 7 0.23
13 4 0.13
14 9 0.30
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TATTAATATTAA
Found at i:7547629 original size:20 final size:22
Alignment explanation
Indices: 7547604--7547649 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
7547594 AGTTATATTT
7547604 TATTAATATTAA-ATA-ATTAA
1 TATTAATATTAATATATATTAA
7547624 TATTAATATTAATATATATTAA
1 TATTAATATTAATATATATTAA
7547646 -ATTA
1 TATTA
7547650 GTTTTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.50
21 7 0.29
22 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTAATATTAATATATATTAA
Found at i:7547744 original size:18 final size:17
Alignment explanation
Indices: 7547712--7547768 Score: 51
Period size: 19 Copynumber: 3.1 Consensus size: 17
7547702 CTAATTTATT
*
7547712 AAATTATTTTGTTAATTA
1 AAATTA-TTTATTAATTA
7547730 AAATTATTATATTAAATTA
1 AAATTATT-TATT-AATTA
*
7547749 AATATTAATTTACTAATTA
1 AA-ATT-ATTTATTAATTA
7547768 A
1 A
7547769 TAAATGTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 2 0.06
18 9 0.27
19 13 0.39
20 6 0.18
21 3 0.09
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
AAATTATTTATTAATTA
Found at i:7548235 original size:19 final size:19
Alignment explanation
Indices: 7548196--7548232 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7548186 ACATATTTAT
*
7548196 TTTTTAAATCTCTTATTAA
1 TTTTTAAATCTATTATTAA
7548215 TTTTTAAAT-TATTATTAA
1 TTTTTAAATCTATTATTAA
7548233 ATTAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTAAATCTATTATTAA
Found at i:7548464 original size:180 final size:177
Alignment explanation
Indices: 7547960--7548946 Score: 820
Period size: 180 Copynumber: 5.5 Consensus size: 177
7547950 ATGATTTTAA
* *
7547960 AGATAATTATTCAAATAGTCATAACTATTTGAACTTGCTT-AGTAAACAAATTTAGTTTTTCAAA
1 AGATAATTATTCAAATAGTCATAACTATTTGAAC-TGTTTGA-TAAACAGATTTAGTTTTT-AAA
* * * * *
7548024 TATCCTGCTTATTAATCTTTCAAA-AGTTAATAAATTAGTATTATTTTCTTTCAAATAAGCTTGT
63 TCT-CTACTTA-TAATTTTTGAAATA-TTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGT
* ** *
7548088 ATGAACTAAAACAATTATTTTATGATTAAACAAAAGGTCAAAATGATTTGAGAT
125 ATGAACTAAAACAATTGTTTTATGACAAAAC-AAAGATCAAAATGATTTGAGAT
* * * * * * *
7548142 AGATAATTATTCTAATAAT-ATTAACTATTTGAACTGATCGACAAACATATTTATTTTTTAAA--
1 AGATAATTATTCAAATAGTCA-TAACTATTTGAACTGTTTGATAAACAGATTTAGTTTTTAAATC
* * * *
7548204 TCT-CTTATTAATTTTT-AAATTATTATTAAATTAGTATTATTTTTATTT-GAATTAGCTTATAT
65 TCTACTTA-TAATTTTTGAAA-TATTAATAAATTAGTATTA-TTTTATTTCAAATAAGCTTGTAT
* *
7548266 G-A-TAAAAAAAATTTGTTTTATGACAAAACAAAGATCATAATGATTTGAGATT
127 GAACT-AAAACAA-TTGTTTTATGACAAAACAAAGATCAAAATGATTTGAGA-T
* * * * *
7548318 A-ATATTTGTTCAAATAGTCATAACTATTAGAACTGCTTTGAAAAACAGCTTTAGTTTTTAAATC
1 AGATAATTATTCAAATAGTCATAACTATTTGAACTG-TTTGATAAACAGATTTAGTTTTTAAATC
* * * * * *
7548382 TCTAACTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTTAGATAAGTTTTTATT
65 TCT-ACTT-ATAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATG
* * * *
7548447 AACCAAAACAATTGTTTTATGACAAAACAAA-ATGTCAAAATAATTTTAAAT
128 AACTAAAACAATTGTTTTATGACAAAACAAAGA--TCAAAATGATTTGAGAT
* * * * *
7548498 ATATAATTATTTAAATAGTCATAACTATTTGAAAT-TATTCAGTAAACAGATTTATTTTTTAAAA
1 AGATAATTATTCAAATAGTCATAACTATTTGAACTGT-TTGA-TAAACAGATTTAGTTTTT-AAA
* * *
7548562 TCTCTTACTT-TAATTTTTTG-AATGTTAATAAATTAGTATTGTTTTATTCCAAATAAGCTTGTA
63 TCTC-TACTTATAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTA
* * * * * *
7548625 TGAACTAAAATAATTGTTTTACGACTAAACAAAAGGAT-AGAATTATTTGAAAT
126 TGAACTAAAACAATTGTTTTATGACAAAAC-AAA-GATCAAAATGATTTGAGAT
** * * * * *
7548678 AGATAATTATTCTGATAGTCTTAACTATTTGAACTAGTTCGGCT-AACATATTTATTTTTTAAAT
1 AGATAATTATTCAAATAGTCATAACTATTTGAACT-GTT-TGATAAACAGATTTAGTTTTTAAAT
* * * * *
7548742 CTC-A--T-TAATTTTTGAAATATTATTAAATTAGTATCATTTAAATTCGAATAAGCTTGTATGA
64 CTCTACTTATAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGA
*** * * * **
7548803 AAGGAAACAATTGTTGTATGACAAAATAAAAATCATTATGATTTGAGAT
129 ACTAAAACAATTGTTTTATGACAAAACAAAGATCAAAATGATTTGAGAT
*
7548852 AGATAA-TAGTTCAAATAGTCATAACTATTTGAACTAGTTT-AGTAAATAGATTTAGTTTTTAAA
1 AGATAATTA-TTCAAATAGTCATAACTATTTGAACT-GTTTGA-TAAACAGATTTAGTTTTTAAA
*
7548915 --TCT-CTTATTAATTTTTCAAAATATTAATAAAT
63 TCTCTACTTA-TAATTTTT-GAAATATTAATAAAT
7548947 CAAAATTGTT
Statistics
Matches: 651, Mismatches: 110, Indels: 93
0.76 0.13 0.11
Matches are distributed among these distances:
172 2 0.00
173 5 0.01
174 71 0.11
175 117 0.18
176 85 0.13
177 24 0.04
178 4 0.01
179 17 0.03
180 184 0.28
181 97 0.15
182 43 0.07
183 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (177 bp):
AGATAATTATTCAAATAGTCATAACTATTTGAACTGTTTGATAAACAGATTTAGTTTTTAAATCT
CTACTTATAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAAC
TAAAACAATTGTTTTATGACAAAACAAAGATCAAAATGATTTGAGAT
Found at i:7549323 original size:180 final size:181
Alignment explanation
Indices: 7548950--7550126 Score: 1122
Period size: 180 Copynumber: 6.5 Consensus size: 181
7548940 AATAAATCAA
* * * * **
7548950 AATTGTTTTACGATAAAACAAAAGATTATAACAATTTGAAAT-GAATAATTATTCAAATAGTCAT
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAG-ATAATTATTCAAATAGTCAT
* * *
7549014 AACAATTTGAACTTGCTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAA
65 AACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAA
* * * * * *
7549079 TTTTAATAAATTAGTACTATTTTATTTTGAAA-AAGCTTTTATGACCAGAAAC
130 TATTAATAAATTA-AATTATTTTATTTCGAAATAAGCTTGTATGAACAGAAAC
* * * *
7549131 AATTGGTTTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTCTTTAAATAGTCATA
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA
* * * **
7549196 ACTATTTGAACGTGTTTAGAAAACATATTTA-TTTTTAAAAATTTTACTTATTAATTTTTGGAAT
66 ACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAAT
* *
7549260 ATTAATAAATTTAAATTATTTTA-TTCGAAATAAGCTTGCATGAACA-AAGCC
131 ATTAATAAA-TTAAATTATTTTATTTCGAAATAAGCTTGTATGAACAGAA-AC
* * *
7549311 AATTGTTTTATGACAAAACAAAAAGTCATAAT-ATTTTGAAATAGATAATTGTTCAGATAGTCAT
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGA-TTTGAAATAGATAATTATTCAAATAGTCAT
* * * * * *
7549375 AACTATTTGAACTTATTTGGTAAACATATTCT-TTTTTTTATTCTCTCACTCATTAATTTTTGGA
65 AACTATTTGAACTTGTTTGGTAAACATATT-TATTTTTTAAATCTTTTACTTATTAATTTTTGGA
* * * * *
7549439 ATATTAATAAATTAGTATTATCTTACTTC-AAATAAGCTTATATGAATTA-AAA-
129 ATATTAATAAATTA-AATTATTTTATTTCGAAATAAGCTTGTATGAA-CAGAAAC
* * * * * * * *
7549491 AAGTGTTTTATTAGAAAAGAAAAGGTCATAATGATTTGAAATAGATAATTATTGAAATATTAATG
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA
* * * * ***
7549556 ACTATTTGAACTTGTTTGGTAAATATATTTATTTTTTAAATCTTTTACCTGTTAATTGTCAAAAT
66 ACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAAT
* * *
7549621 ATTAATTAATTAATATTATTTTAATTT-G-AATAA-ATTGTATGAACAGAAAT
131 ATTAATAAATTAA-ATTATTTT-ATTTCGAAATAAGCTTGTATGAACAGAAAC
** * * ** *
7549671 AATTGTTTTATGACAAAACAAAAAATCATAA-CATGTTGAAATAAATAATTGCTCAAATAGCCAT
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGAT-TTGAAATAGATAATTATTCAAATAGTCAT
* *
7549735 AA-TGATTAGAACTTGTTTGGTAAACAAATTTATTTTTT-AATCTTTTACTTATTAATTGTCTT-
65 AACT-ATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATT-T-TTG
* ** * *
7549797 -AATATTCATAAATTTGTATTATTTTA-TTCGAAATAAGCTTAG-ATGAATAGAAAA
127 GAATATTAATAAA-TTAAATTATTTTATTTCGAAATAAGCTT-GTATGAACAGAAAC
* * * * * *
7549851 AATTCTTTTATTACAAAACAAAAGGTTATAGCT-ATTTCAAATAGATAATTATTCAAATAGTCCT
1 AATTGTTTTATGACAAAACAAAAGGTCATA-ATGATTTGAAATAGATAATTATTCAAATAGTCAT
* * * * * * *
7549915 AATTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATTAATTTTTGGA
65 AACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCT-TTTACTTATTAATTTTTGGA
* * * *
7549979 TTATTAATAAATTAATATTATTTTATTTTG-AATAAGCTTATATGAACTGAAAC
129 ATATTAATAAATTAA-ATTATTTTATTTCGAAATAAGCTTGTATGAACAGAAAC
* * ** * * *
7550032 AACTCTTTTATGACAAATTAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATTGTCATG
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA
* * * *
7550097 ATTATTTGATCTAGTGTGGTAAACATATTT
66 ACTATTTGAACTTGTTTGGTAAACATATTT
7550127 TTAAAATTTT
Statistics
Matches: 803, Mismatches: 156, Indels: 74
0.78 0.15 0.07
Matches are distributed among these distances:
177 2 0.00
178 3 0.00
179 66 0.08
180 444 0.55
181 274 0.34
182 14 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA
ACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAAT
ATTAATAAATTAAATTATTTTATTTCGAAATAAGCTTGTATGAACAGAAAC
Found at i:7549674 original size:675 final size:670
Alignment explanation
Indices: 7548326--7549643 Score: 1541
Period size: 675 Copynumber: 1.9 Consensus size: 670
7548316 TTAATATTTG
* *
7548326 TTCAAATAGTCATAACTATTAGAACTGCTTTGAAAAACAGCTTTAGTTTTTAAATCTCTAACTTA
1 TTCAAATAGTCATAACAATTAGAACTGCTTTGAAAAACAGATTTAGTTTTTAAATCTCTAACTTA
* * *
7548391 ATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTTAGATAAGTTTTTATTAACCAAAAC
66 ATAATTTTTGAAATATTAATAAAGTAGTACTATTTTATTTTAGAAAAGCTTTTATTAACCAAAAC
* * * *
7548456 AATTGTTTTATGACAAAACAAAATGTCAAAATAATTTTAAATATATAATTATTTAAATAGTCATA
131 AATTGGTTTATGACAAAACAAAAGGTCAAAATAATTTGAAATAGATAATTATTTAAATAGTCATA
* * * * *
7548521 ACTATTTGAAATTATTCAGTAAACAGATTTATTTTTTAAAATCTCTTACTTTAATTTTTTGAATG
196 ACTATTTGAAAGTATTCAGAAAACAGATTTATTTTTAAAAATCTCTTACTTTAATTTTTGGAATA
* * * * *
7548586 TTAATAAATTAGTATTGTTTTATTCCAAATAAGCTTGTATGAACTAAAATAATTGTTTTACGACT
261 TTAATAAATTAGAATTATTTTATTCCAAATAAGCTTGCATGAACTAAAACAATTGTTTTACGACA
* * *
7548651 AAACAAAAGGATAGAATTATTTGAAATAGATAATTATTCTGATAGTCTTAACTATTTGAACTAGT
326 AAACAAAAAGATAGAATTATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTGAACTAGT
*
7548716 TCGGCTAACATATTTATTTTTTAAATCTCATTAATTTTTGAAATATTATTAAATTAGTATCATTT
391 TCGGCTAACATATTTATTTTTTAAATCTCATTAATTTTTGAAATATTAATAAATTAGTATCATTT
* * * * * *
7548781 AAATTCGAATAAGCTTGTATGAAAGGAAACAATTGTTGTATGACAAAATAAAAATCATTATGATT
456 AAATTCAAATAAGCTTATATGAAAGGAAAAAAGTGTTGTATGACAAAAGAAAAATCATAATGATT
* *
7548846 TGAGATAGATAATAGTTCAAATAGTCATAACTATTTGAACTAGTTTAGTAAATAGATTTAGTTTT
521 TGAAATAGATAATAGTTCAAATAGTAATAACTATTTGAACTAGTTTAGTAAATAGATTTAGTTTT
* *
7548911 TAAATCTCTTATTAATTTTTCAAAATATTAATAAATCAAAATTGTTTTACGATAAAACAAAAGAT
586 TAAATCTCTTATTAATTTGTCAAAATATTAATAAATCAAAATTATTTTAC-ATAAAACAAAAGAT
7548976 TATAACAATTTGAAATGAATAATTA
650 TAT---AA-TTGAAATGAATAATTA
* ** * * *
7549001 TTCAAATAGTCATAACAATTTGAACTTGC-TTGGTAAACAGATTTATTTTTTAAATCTTTTACTT
1 TTCAAATAGTCATAACAATTAGAAC-TGCTTTGAAAAACAGATTTAGTTTTTAAATCTCTAACTT
* * * * *
7549065 ATTAATTTTTGGAATTTTAATAAATTAGTACTATTTTATTTT-GAAAAAGCTTTTA-TGACCAGA
65 AATAATTTTTGAAATATTAATAAAGTAGTACTATTTTATTTTAG-AAAAGCTTTTATTAACCA-A
* * * *
7549128 AACAATTGGTTTATGACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTCTTTAAATAGTC
128 AACAATTGGTTTATGACAAAACAAAAGGTCAAAATAATTTGAAATAGATAATTATTTAAATAGTC
* * * *
7549193 ATAACTATTTGAACGTGTTTAGAAAACATATTTATTTTTAAAAAT-T-TTACTTATTAATTTTTG
193 ATAACTATTTGAAAGTATTCAGAAAACAGATTTATTTTTAAAAATCTCTTAC-T-TTAATTTTTG
* *
7549256 GAATATTAATAAATTTA-AATTATTTTATTCGAAATAAGCTTGCATGAAC-AAAGCCAATTGTTT
256 GAATATTAATAAA-TTAGAATTATTTTATTCCAAATAAGCTTGCATGAACTAAA-ACAATTGTTT
* * *
7549319 TATGACAAAACAAAAAG-TCATAA-TATTTTGAAATAGATAATTGTTCAGATAGTCATAACTATT
319 TACGACAAAACAAAAAGAT-AGAATTA-TTTGAAATAGATAATTATTCAGATAGTCATAACTATT
* * ** *
7549382 TGAACTTA-TTTGG-TAAACATATTCTTTTTTTTATTCTCTCACTCATTAATTTTTGGAATATTA
382 TGAAC-TAGTTCGGCT-AACATATT-TATTTTTTA---AAT--CTCATTAATTTTTGAAATATTA
* * ** * * *
7549445 ATAAATTAGTATTATCTT-ACTTCAAATAAGCTTATATG-AATTAAAAAAGTGTTTTATTAGAAA
439 ATAAATTAGTATCAT-TTAAATTCAAATAAGCTTATATGAAAGGAAAAAAGTGTTGTATGACAAA
* * * * *
7549508 AGAAAAGGTCATAATGATTTGAAATAGATAATTA-TTGAAATATTAATGACTATTTGAACTTGTT
503 AGAAAA-ATCATAATGATTTGAAATAGATAA-TAGTTCAAATAGTAATAACTATTTGAACTAGTT
* * * * * * *
7549572 TGGTAAATATATTTATTTTTTAAATCTTTTACCTGTTAA-TTGTCAAAATATTAATTAATTAATA
566 TAGTAAATAGATTTAGTTTTTAAATCTCTTA----TTAATTTGTCAAAATATTAATAAATCAAAA
7549636 TTATTTTA
627 TTATTTTA
7549644 ATTTGAATAA
Statistics
Matches: 538, Mismatches: 81, Indels: 39
0.82 0.12 0.06
Matches are distributed among these distances:
673 4 0.01
674 15 0.03
675 319 0.59
676 16 0.03
679 1 0.00
680 23 0.04
681 124 0.23
682 4 0.01
684 28 0.05
685 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (670 bp):
TTCAAATAGTCATAACAATTAGAACTGCTTTGAAAAACAGATTTAGTTTTTAAATCTCTAACTTA
ATAATTTTTGAAATATTAATAAAGTAGTACTATTTTATTTTAGAAAAGCTTTTATTAACCAAAAC
AATTGGTTTATGACAAAACAAAAGGTCAAAATAATTTGAAATAGATAATTATTTAAATAGTCATA
ACTATTTGAAAGTATTCAGAAAACAGATTTATTTTTAAAAATCTCTTACTTTAATTTTTGGAATA
TTAATAAATTAGAATTATTTTATTCCAAATAAGCTTGCATGAACTAAAACAATTGTTTTACGACA
AAACAAAAAGATAGAATTATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTGAACTAGT
TCGGCTAACATATTTATTTTTTAAATCTCATTAATTTTTGAAATATTAATAAATTAGTATCATTT
AAATTCAAATAAGCTTATATGAAAGGAAAAAAGTGTTGTATGACAAAAGAAAAATCATAATGATT
TGAAATAGATAATAGTTCAAATAGTAATAACTATTTGAACTAGTTTAGTAAATAGATTTAGTTTT
TAAATCTCTTATTAATTTGTCAAAATATTAATAAATCAAAATTATTTTACATAAAACAAAAGATT
ATAATTGAAATGAATAATTA
Found at i:7549713 original size:360 final size:359
Alignment explanation
Indices: 7548950--7550128 Score: 1236
Period size: 360 Copynumber: 3.3 Consensus size: 359
7548940 AATAAATCAA
* * * *
7548950 AATTGTTTTACGATAAAACAAAAGATTATAACAATTTGAAAT-GAATAATTATTCAAATAGTCAT
1 AATTGTTTTATGACAAAACAAAAAATCATAACAATTTGAAATAG-ATAATTATTCAAATAGTCAT
* ** * *
7549014 AACAATTTGAACTTGCTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAA
65 AACTATTTGAACTTATTTGGTAAACATATTT-TTTTTTTAATCTTTTACTTATTAATTTTTGGAA
* * * * * *
7549079 TTTTAATAAATTAGTACTATTTTATTTTGAAA-AAGCTTTTATGACCA-GAAACAATTGGTTTAT
129 TATTAATAAATTAGTATTATTTTA--TTCAAATAAGCTTATATGA--ATGAAAAAATTGTTTTAT
* * * *
7549142 GACAAAATAAAAGGTCATAATGATTTGAAATAGATAATTCTTTAAATAGTCATAACTATTTGAAC
190 TACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
* * **
7549207 GTGTTTAGAAAACATATTTA-TTTTTAAAAATTTTACTTATTAATTTTTGGAATATTAATAAATT
255 TTGTTTAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAA-T
* * *
7549271 TAA-ATTATTTT-ATTCGAAATAAGCTTGCATGAACA-AAGCC
319 TAATATTATTTTAATTTG-AATAAGCTTGTATGAACAGAA-AC
* * * * *
7549311 AATTGTTTTATGACAAAACAAAAAGTCATAATATTTTGAAATAGATAATTGTTCAGATAGTCATA
1 AATTGTTTTATGACAAAACAAAAAATCATAACAATTTGAAATAGATAATTATTCAAATAGTCATA
* * * *
7549376 ACTATTTGAACTTATTTGGTAAACATATTCTTTTTTTTATTCTCTCACTCATTAATTTTTGGAAT
66 ACTATTTGAACTTATTTGGTAAACATATT-TTTTTTTTAATCTTTTACTTATTAATTTTTGGAAT
* * * *
7549441 ATTAATAAATTAGTATTATCTTACTTCAAATAAGCTTATATGAATTAAAAAAGTGTTTTATTAGA
130 ATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATATGAATGAAAAAATTGTTTTATTACA
* * * * *
7549506 AAAGAAAAGGTCATAATGATTTGAAATAGATAATTATTGAAATATTAATGACTATTTGAACTTGT
194 AAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGT
* * * * * *** *
7549571 TTGGTAAATATATTTATTTTTTAAATCTTTTACCTGTTAATTGTCAAAATATTAATTAATTAATA
259 TTAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTAATA
* *
7549636 TTATTTTAATTTGAATAA-ATTGTATGAACAGAAAT
324 TTATTTTAATTTGAATAAGCTTGTATGAACAGAAAC
* ** *
7549671 AATTGTTTTATGACAAAACAAAAAATCATAAC-ATGTTGAAATAAATAATTGCTCAAATAGCCAT
1 AATTGTTTTATGACAAAACAAAAAATCATAACAAT-TTGAAATAGATAATTATTCAAATAGTCAT
* * * *
7549735 AA-TGATTAGAACTTGTTTGGTAAACAAATTTATTTTTTAATCTTTTACTTATTAATTGTCTT--
65 AACT-ATTTGAACTTATTTGGTAAACATATTTTTTTTTTAATCTTTTACTTATTAATT-T-TTGG
* * * *
7549797 AATATTCATAAATTTGTATTATTTTATTCGAAATAAGCTTAGATGAATAGAAAAAATTCTTTTAT
127 AATATTAATAAATTAGTATTATTTTATTC-AAATAAGCTTATATGAAT-GAAAAAATTGTTTTAT
* * * * * *
7549862 TACAAAACAAAAGGTTATAGCT-ATTTCAAATAGATAATTATTCAAATAGTCCTAATTATTTAAA
190 TACAAAACAAAAGGTCATA-ATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
* * * * *
7549926 TTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATTAATTTTTGGATTATTAATAAA
254 CTTGTTTAGTAAACATATTTATTTTTTAAATCT-TTTACTTATTAATTTTTGGAATATTAATAAA
* * *
7549990 TTAATATTATTTTATTTTGAATAAGCTTATATGAACTGAAAC
318 TTAATATTATTTTAATTTGAATAAGCTTGTATGAACAGAAAC
* * ** ** * * *
7550032 AACTCTTTTATGACAAATTAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATTGTCATG
1 AATTGTTTTATGACAAAACAAAAAATCATAACAATTTGAAATAGATAATTATTCAAATAGTCATA
* * *
7550097 ATTATTTGATC-TAGTGTGGTAAACATATTTTT
66 ACTATTTGAACTTA-TTTGGTAAACATATTTTT
7550129 AAAATTTTTT
Statistics
Matches: 673, Mismatches: 125, Indels: 40
0.80 0.15 0.05
Matches are distributed among these distances:
358 3 0.00
359 65 0.10
360 317 0.47
361 279 0.41
362 9 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (359 bp):
AATTGTTTTATGACAAAACAAAAAATCATAACAATTTGAAATAGATAATTATTCAAATAGTCATA
ACTATTTGAACTTATTTGGTAAACATATTTTTTTTTTAATCTTTTACTTATTAATTTTTGGAATA
TTAATAAATTAGTATTATTTTATTCAAATAAGCTTATATGAATGAAAAAATTGTTTTATTACAAA
ACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTT
AGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTAATATT
ATTTTAATTTGAATAAGCTTGTATGAACAGAAAC
Found at i:7549972 original size:540 final size:539
Alignment explanation
Indices: 7548977--7550168 Score: 1334
Period size: 540 Copynumber: 2.2 Consensus size: 539
7548967 ACAAAAGATT
* * * * * *
7548977 ATAACAATTTGAAAT-GAATAATTATTCAAATAGTCATAACAATTTGAACTTGCTTGGTAAACAG
1 ATAACGATTTGAAATAG-ATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAA-AC
* * *** * * *
7549041 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATTTTAATAAATTAGTACTATTTTATTT
64 ATTTATTTTTTAAATCTTTTACCTATTAATTGTCAAAATATTAATAAATTAATACTATTTTAATT
* * * ** *
7549106 TGAAAAAGCTTTTATGACCAGAAACAATTGGTTTATGACAAAATAAAAGGTCATAATGATTTGAA
129 TGAAAAA-CTTGTATGAACAGAAACAATTGGTTTATGACAAAACAAAAAATCATAATCATTTGAA
* * * * *
7549171 ATAGATAATTCTTTAAATAGTCATAACTATTTGAACGTGTTTAGAAAACATATTTATTTTTAAAA
193 ATAAATAATTCTTCAAATAGCCATAACTATTAGAACGTGTTTAGAAAACAAATTTATTTTTAAAA
7549236 ATTTTACTTATTAATTTTTGGAATATTAATAAATTTAAATTATTTTATTCGAAATAAGCTTGCAT
258 ATTTTACTTATTAATTTTT-GAATATTAATAAATTTAAATTATTTTATTCGAAATAAGCTTGCAT
** * * *
7549301 GAACAAAGCCAATTGTTTTATGACAAAACAAAAAGTCATAATATTTTGAAATAGATAATTGTTCA
322 GAACAAAGAAAATTCTTTTATGACAAAACAAAAAGTCATAATATTTTCAAATAGATAATTATTCA
* * * * * * * *
7549366 GATAGTCATAACTATTTGAACTTATTTGGTAAACATATTCTTTTTTTTATTCTCTCACTCATTAA
387 AATAGTCATAACTATTTAAACTTATTTAGTAAACAAAGTCATTTTTTAAATCTCTCACTCATTAA
* * *
7549431 TTTTTGGAATATTAATAAATTAGTATTATCTTACTTCAAATAAGCTTATATGAA-TTAAAAAAGT
452 TTTTTGGAATATTAATAAATTAATATTATCTTACTTCAAATAAGCTTATATGAACTGAAAAAACT
* * *
7549495 GTTTTATTAGAAAAGAAAAGGTC
517 CTTTTATGACAAAAGAAAAGGTC
* * * *
7549518 ATAATGATTTGAAATAGATAATTATTGAAATATTAATGACTATTTGAACTTGTTTGGTAAATATA
1 ATAACGATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAA-ACA
* * *
7549583 TTTATTTTTTAAATCTTTTACCTGTTAATTGTCAAAATATTAATTAATTAATATTATTTTAATTT
65 TTTATTTTTTAAATCTTTTACCTATTAATTGTCAAAATATTAATAAATTAATACTATTTTAATTT
* *
7549648 GAATAAA-TTGTATGAACAGAAATAATTGTTTTATGACAAAACAAAAAATCATAA-CATGTTGAA
130 GAA-AAACTTGTATGAACAGAAACAATTGGTTTATGACAAAACAAAAAATCATAATCAT-TTGAA
* * * *
7549711 ATAAATAATTGC-TCAAATAGCCATAA-TGATTAGAACTTGTTTGGTAAACAAATTTATTTTTTA
193 ATAAATAATT-CTTCAAATAGCCATAACT-ATTAGAACGTGTTTAGAAAACAAATTTATTTTTAA
** * **
7549774 ATCTTTTACTTATTAATTGTCTT-AATATTCATAAATTTGTATTATTTTATTCGAAATAAGCTTA
256 AAATTTTACTTATTAATT-T-TTGAATATTAATAAATTTAAATTATTTTATTCGAAATAAGCTT-
* * * * *
7549838 G-ATGAATAGAA-AAAATTCTTTTATTACAAAACAAAAGGTTATAGCTA-TTTCAAATAGATAAT
318 GCATGAACA-AAGAAAATTCTTTTATGACAAAACAAAAAGTCATA-ATATTTTCAAATAGATAAT
* * * * *
7549900 TATTCAAATAGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTTTA-
381 TATTCAAATAGTCATAACTATTTAAACTTATTTAGTAAACAAAGTCATTTTTTAAATCTC-TCAC
* * * * **
7549964 TTATTAATTTTTGGATTATTAATAAATTAATATTATTTTATTTTGAATAAGCTTATATGAACTGA
445 TCATTAATTTTTGGAATATTAATAAATTAATATTATCTTACTTCAAATAAGCTTATATGAACTGA
* **
7550029 AACAACTCTTTTATGACAAATTAAAAGGTC
510 AAAAACTCTTTTATGACAAAAGAAAAGGTC
* * * *
7550059 ATAACGATTTGAAATAGATAATTATTCAAAT-TGTCATGATTATTTGATCTAGTGTGGT-AAACA
1 ATAACGATTTGAAATAGATAATTATTCAAATAT-TCATGACTATTTGAACTTGTTTGGTAAAACA
* * * *
7550122 --TATTTTTAAAATTTTTTACGTACTAATTGTCAAAATATTAATAAATT
65 TTTATTTTTTAAATCTTTTACCTATTAATTGTCAAAATATTAATAAATT
7550169 TGAAAATAAT
Statistics
Matches: 543, Mismatches: 95, Indels: 30
0.81 0.14 0.04
Matches are distributed among these distances:
537 41 0.08
539 5 0.01
540 298 0.55
541 193 0.36
542 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (539 bp):
ATAACGATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTGGTAAAACAT
TTATTTTTTAAATCTTTTACCTATTAATTGTCAAAATATTAATAAATTAATACTATTTTAATTTG
AAAAACTTGTATGAACAGAAACAATTGGTTTATGACAAAACAAAAAATCATAATCATTTGAAATA
AATAATTCTTCAAATAGCCATAACTATTAGAACGTGTTTAGAAAACAAATTTATTTTTAAAAATT
TTACTTATTAATTTTTGAATATTAATAAATTTAAATTATTTTATTCGAAATAAGCTTGCATGAAC
AAAGAAAATTCTTTTATGACAAAACAAAAAGTCATAATATTTTCAAATAGATAATTATTCAAATA
GTCATAACTATTTAAACTTATTTAGTAAACAAAGTCATTTTTTAAATCTCTCACTCATTAATTTT
TGGAATATTAATAAATTAATATTATCTTACTTCAAATAAGCTTATATGAACTGAAAAAACTCTTT
TATGACAAAAGAAAAGGTC
Found at i:7550394 original size:17 final size:18
Alignment explanation
Indices: 7550364--7550409 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
7550354 TTTAATAAAT
*
7550364 TATTGATTATAATTTATAA
1 TATTTATTATAATTT-TAA
7550383 -ATTTATTA-AATTTTAA
1 TATTTATTATAATTTTAA
7550399 TATTTATTATA
1 TATTTATTATA
7550410 TTATTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 3 0.12
17 13 0.54
18 8 0.33
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TATTTATTATAATTTTAA
Found at i:7550917 original size:19 final size:19
Alignment explanation
Indices: 7550893--7550937 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7550883 TATATTAATT
7550893 TTATAATAAGATTATA-AAA
1 TTATAATAA-ATTATATAAA
*
7550912 TTATAATAATTTATATAAA
1 TTATAATAAATTATATAAA
7550931 TTA-AATA
1 TTATAATA
7550938 TAATAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
TTATAATAAATTATATAAA
Found at i:7551088 original size:31 final size:31
Alignment explanation
Indices: 7551031--7551089 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
7551021 ATAACTATTA
* * *
7551031 TTACTTAATATTATAAATTAAGTTATATAAT
1 TTACTTAATAATATAAAGTAAATTATATAAT
7551062 TTAC-TAATAATATATAAGTAAATTATAT
1 TTACTTAATAATATA-AAGTAAATTATAT
7551090 TAGTAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (31 bp):
TTACTTAATAATATAAAGTAAATTATATAAT
Found at i:7551094 original size:13 final size:13
Alignment explanation
Indices: 7551072--7551103 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7551062 TTACTAATAA
7551072 TATATAAGTAAAT
1 TATATAAGTAAAT
*
7551085 TATATTAGTAAAT
1 TATATAAGTAAAT
7551098 TATATA
1 TATATA
7551104 TTTAGAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (13 bp):
TATATAAGTAAAT
Found at i:7551216 original size:23 final size:23
Alignment explanation
Indices: 7551190--7551241 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
7551180 GAAATTGTAT
*
7551190 TAATTA-TAGTTCTAATTATTATA
1 TAATTATTAGTT-TAATCATTATA
* *
7551213 TAATTATTTGTTTAATCCTTATA
1 TAATTATTAGTTTAATCATTATA
7551236 TAATTA
1 TAATTA
7551242 AATTAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.54
Consensus pattern (23 bp):
TAATTATTAGTTTAATCATTATA
Found at i:7551496 original size:16 final size:17
Alignment explanation
Indices: 7551475--7551508 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7551465 AAAATAATAA
7551475 ATAATATAGT-ATAATT
1 ATAATATAGTAATAATT
*
7551491 ATAATATATTAATAATT
1 ATAATATAGTAATAATT
7551508 A
1 A
7551509 ATTAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATAATATAGTAATAATT
Found at i:7551556 original size:20 final size:20
Alignment explanation
Indices: 7551512--7551552 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7551502 ATAATTAATT
7551512 AATTATATAAGATAAATTTA
1 AATTATATAAGATAAATTTA
* *
7551532 AATTATCTAATAT-AATTTA
1 AATTATATAAGATAAATTTA
7551551 AA
1 AA
7551553 ATTAATATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
AATTATATAAGATAAATTTA
Found at i:7552854 original size:21 final size:21
Alignment explanation
Indices: 7552828--7552867 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7552818 AGCCTTACCC
7552828 GATCGATCCCTTGCTTGAGGG
1 GATCGATCCCTTGCTTGAGGG
7552849 GATCGATCCCTTGCTTGAG
1 GATCGATCCCTTGCTTGAG
7552868 CAATCGATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.30
Consensus pattern (21 bp):
GATCGATCCCTTGCTTGAGGG
Found at i:7552880 original size:21 final size:21
Alignment explanation
Indices: 7552829--7552878 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
7552819 GCCTTACCCG
**
7552829 ATCGATCCCTTGCTTGAGGGG
1 ATCGATCCCTTGCTTGAGGCA
7552850 ATCGATCCCTTGCTTGA-GCA
1 ATCGATCCCTTGCTTGAGGCA
7552870 ATCGATCCC
1 ATCGATCCC
7552879 CTATGTGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.18, C:0.30, G:0.24, T:0.28
Consensus pattern (21 bp):
ATCGATCCCTTGCTTGAGGCA
Found at i:7553934 original size:17 final size:17
Alignment explanation
Indices: 7553912--7553956 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7553902 CCATTTATGA
7553912 AATATTAGA-TAATTAAT
1 AATATTA-ATTAATTAAT
7553929 AATATTAATTAATTAAT
1 AATATTAATTAATTAAT
*
7553946 ATTTATTAATT
1 A-ATATTAATT
7553957 TAATATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 1 0.04
17 16 0.64
18 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
AATATTAATTAATTAAT
Found at i:7553945 original size:14 final size:14
Alignment explanation
Indices: 7553921--7553963 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7553911 AAATATTAGA
7553921 TAATTAA-TAATAT
1 TAATTAATTAATAT
7553934 TAATTAATTAATAT
1 TAATTAATTAATAT
*
7553948 TTATTAATTTAATAT
1 TAATTAA-TTAATAT
7553963 T
1 T
7553964 TTATCATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 7 0.26
14 12 0.44
15 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:7554336 original size:29 final size:27
Alignment explanation
Indices: 7554297--7554355 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
7554287 AAAAATCTTT
*
7554297 TAATATATTAATCAAATATAATTATATAA
1 TAATATATTAAACAAATA-AATT-TATAA
* *
7554326 TAATTTATTAAACCAATAAATTTATAA
1 TAATATATTAAACAAATAAATTTATAA
7554353 TAA
1 TAA
7554356 AATTAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 8 0.30
28 4 0.15
29 15 0.56
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (27 bp):
TAATATATTAAACAAATAAATTTATAA
Found at i:7554623 original size:13 final size:14
Alignment explanation
Indices: 7554605--7554636 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7554595 AATTCTTATG
7554605 ATTTAAA-TATATA
1 ATTTAAATTATATA
7554618 ATTTAAATTATATA
1 ATTTAAATTATATA
7554632 ATTTA
1 ATTTA
7554637 TTAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTAAATTATATA
Found at i:7554661 original size:24 final size:24
Alignment explanation
Indices: 7554626--7554682 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
7554616 TAATTTAAAT
7554626 TATATAATTTATTAAATTATTAA-C
1 TATATAATTTATTAAATTA-TAATC
*
7554650 TATA-AATATTATTCAATTATAATC
1 TATATAAT-TTATTAAATTATAATC
*
7554674 TATACAATT
1 TATATAATT
7554683 AATCTATACT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 6 0.21
24 20 0.69
25 3 0.10
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (24 bp):
TATATAATTTATTAAATTATAATC
Found at i:7554731 original size:16 final size:16
Alignment explanation
Indices: 7554710--7554759 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
7554700 TTTAAACAAA
7554710 AATTTTAAATAATATT
1 AATTTTAAATAATATT
* *
7554726 AATTTTAATTAATTTT
1 AATTTTAAATAATATT
7554742 AATTCTATAAATAA-ATT
1 AATT-T-TAAATAATATT
7554759 A
1 A
7554760 GACTTAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 18 0.64
17 4 0.14
18 6 0.21
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTTAAATAATATT
Found at i:7554828 original size:25 final size:24
Alignment explanation
Indices: 7554792--7554845 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
7554782 TATATTATAG
7554792 TATTAAATATAACTAGTAAAAATA
1 TATTAAATATAACTAGTAAAAATA
* * *
7554816 TATTTAATAATAATTATTAAAAATA
1 TATTAAAT-ATAACTAGTAAAAATA
7554841 T-TTAA
1 TATTAA
7554846 TTCAATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (24 bp):
TATTAAATATAACTAGTAAAAATA
Found at i:7554992 original size:12 final size:12
Alignment explanation
Indices: 7554941--7555001 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 12
7554931 TCATTTAATA
7554941 ATTATAAA-TA-
1 ATTATAAATTAT
7554951 ATTAT-AATTAT
1 ATTATAAATTAT
*
7554962 -TT-TATATTAT
1 ATTATAAATTAT
*
7554972 -TTAT-TATTAT
1 ATTATAAATTAT
7554982 ATTATAAATTAT
1 ATTATAAATTAT
7554994 ATTATAAA
1 ATTATAAA
7555002 AACTACAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
9 3 0.07
10 22 0.51
11 5 0.12
12 13 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTATAAATTAT
Found at i:7555125 original size:26 final size:27
Alignment explanation
Indices: 7555081--7555141 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
7555071 CTACTCTTTT
7555081 TTTAT-ATAGAATTTAATTATATATAAA
1 TTTATAATAGAATTTAATTATA-ATAAA
*
7555108 -TTATAATAGTATTT-ATTATAATAAA
1 TTTATAATAGAATTTAATTATAATAAA
7555133 TTTATAATA
1 TTTATAATA
7555142 ATCCATATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
25 5 0.16
26 18 0.58
27 8 0.26
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
TTTATAATAGAATTTAATTATAATAAA
Found at i:7555217 original size:14 final size:14
Alignment explanation
Indices: 7555180--7555221 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
7555170 GAATGTTAAT
7555180 AATTCAAAAT-TTTA
1 AATT-AAAATATTTA
*
7555194 AATTTTAAATATTTA
1 AA-TTAAAATATTTA
7555209 AATTAAAATATTT
1 AATTAAAATATTT
7555222 CATTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:7555397 original size:27 final size:27
Alignment explanation
Indices: 7555365--7555427 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
7555355 ATATACATTT
* *
7555365 AATTATTATACT-ATTTGATTATCATAA
1 AATTATTA-ACTAATTTAATTATAATAA
*
7555392 AATTATTAACTAATTTAATTGTAATAA
1 AATTATTAACTAATTTAATTATAATAA
*
7555419 ATTTATTAA
1 AATTATTAA
7555428 AATATACAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (27 bp):
AATTATTAACTAATTTAATTATAATAA
Found at i:7555736 original size:18 final size:18
Alignment explanation
Indices: 7555715--7555779 Score: 57
Period size: 19 Copynumber: 3.8 Consensus size: 18
7555705 ACACTAATTT
* * *
7555715 ATTAAATTATTTTGTTTA
1 ATTAAATTATTATATTAA
7555733 ATTAAAATTATTATATTAA
1 ATT-AAATTATTATATTAA
7555752 ATTAAA-TATTA-ATT-A
1 ATTAAATTATTATATTAA
*
7555767 ATTATA-TATTATA
1 ATTAAATTATTATA
7555780 ATTTACTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 11 0.27
16 4 0.10
17 5 0.12
18 6 0.15
19 15 0.37
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATTAAATTATTATATTAA
Found at i:7555775 original size:15 final size:17
Alignment explanation
Indices: 7555741--7555779 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
7555731 TAATTAAAAT
7555741 TATTATATTAAATTAAA
1 TATTATATTAAATTAAA
*
7555758 TATTA-ATT-AATTATA
1 TATTATATTAAATTAAA
7555773 TATTATA
1 TATTATA
7555780 ATTTACTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 11 0.55
16 4 0.20
17 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATATTAAATTAAA
Found at i:7556247 original size:180 final size:177
Alignment explanation
Indices: 7555927--7556689 Score: 551
Period size: 180 Copynumber: 4.2 Consensus size: 177
7555917 TTAAATTAAC
* * * * ** * *
7555927 AATGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
1 AATGATTTGAAATAGATAATTATTCTAATAATCATAACTA-TT-AAAATGATCTG-AAACAAATT
* * * * * * * * *
7555992 CAGTTTTTCAACTATCCTACTTATTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTC
63 TA-TTTTTTAAATCTCTTACTTATTAAT-TTTTAAAATATTAATAAATTAGTATTATTTTATCT-
* *
7556056 GAATAAGCTTATATGAATTGAAACAATTATTTTATGATTAAACAAAAGGTTAG
125 GAATAAGCTTATATGAATTGAAACAATTATTTTATGACTAAACAAAAGGTCAG
* * *
7556109 AACT-ATTTGAAATAGATAATTATTCTAATAATCTTAACTATTCAAATTGATCTGCAAACACATT
1 AA-TGATTTGAAATAGATAATTATTCTAATAATCATAACTATT-AAAATGATCTG-AAACAAATT
*
7556173 TATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTTATCTGA
63 TATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTA-TTTTATCTGA
* * * * *
7556238 ATTAGCTTATATG-A-TAAAAAAATTATTTTATGAC-AAA-ATAAAGATCAT
127 ATAAGCTTATATGAATTGAAACAATTATTTTATGACTAAACA-AAAGGTCAG
* * * * * * * * * *
7556286 AATGATTTGAGATTA-ATATTTGTTCAAATAGTAATAACTA-TAGAACTGCTTTGAAAAATAACT
1 AATGATTTGA-AATAGATAATTATTCTAATAATCATAACTATTA-AAATGATCTGAAACA-AA-T
* * * * * * * *
7556349 TTAGTTTTTAAATATCTTGCTTAATAATTTTTGAAATATTAATAAAATAGTATTATTTTATTTCA
62 TTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATCTGA
* * * * * * * * *
7556414 GATAAGTTTTTGTTAAATGAAACAATTGTTTTATGACAAAACAAAATGTCAA
127 -ATAAGCTTATATGAATTGAAACAATTATTTTATGACTAAACAAAAGGTCAG
* * * * * * * *
7556466 AATAATTTGAAACAGATAATTGTT-TAAATAGTCATATCTATTTGAAAATGTTCAGTAAACAGAT
1 AATGATTTGAAATAGATAATTATTCT-AATAATCATAACTA-TT-AAAATGATCTG-AAACAAAT
* ** * *
7556530 TTATTTTTTTAAATCTCTTGC-T-TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCC
62 TTA-TTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTA-TCT
* * * * *
7556593 AAATAAGCTTGTATGAATTGAAATAATTGTTTTATGACTAAAGAAAAGGAT-AG
125 GAATAAGCTTATATGAATTGAAACAATTATTTTATGACTAAACAAAAGG-TCAG
* * *
7556646 AATGATTTGAAATAGATTATTATTCTGATAATCTTAACTATTAA
1 AATGATTTGAAATAGATAATTATTCTAATAATCATAACTATTAA
7556690 TTTATAATTG
Statistics
Matches: 456, Mismatches: 101, Indels: 52
0.75 0.17 0.09
Matches are distributed among these distances:
175 5 0.01
176 19 0.04
177 93 0.20
178 23 0.05
179 29 0.06
180 190 0.42
181 35 0.08
182 56 0.12
183 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
AATGATTTGAAATAGATAATTATTCTAATAATCATAACTATTAAAATGATCTGAAACAAATTTAT
TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATCTGAATAA
GCTTATATGAATTGAAACAATTATTTTATGACTAAACAAAAGGTCAG
Found at i:7556814 original size:15 final size:14
Alignment explanation
Indices: 7556752--7556850 Score: 59
Period size: 15 Copynumber: 7.2 Consensus size: 14
7556742 TAAATATTTT
*
7556752 ATTATTATATTATA
1 ATTATAATATTATA
7556766 A-TATAATATTATA
1 ATTATAATATTATA
* * *
7556779 GTCA-AA-ATTGT-
1 ATTATAATATTATA
7556790 -TTAT-ATATTATA
1 ATTATAATATTATA
7556802 ATTATTAATATTATA
1 ATTA-TAATATTATA
7556817 ACTTATAATAATTA-A
1 A-TTATAAT-ATTATA
*
7556832 ATTAAAAATATTATTA
1 ATT-ATAATATTA-TA
7556848 ATT
1 ATT
7556851 TGTTATATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
10 3 0.05
11 4 0.06
12 4 0.06
13 16 0.24
14 9 0.14
15 19 0.29
16 11 0.17
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (14 bp):
ATTATAATATTATA
Found at i:7557201 original size:24 final size:24
Alignment explanation
Indices: 7557152--7557211 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
7557142 CTTAATAATT
*
7557152 TAATA-AATTAGTTACAACTAATTA
1 TAATATAATTA-TTACAACTAACTA
7557176 TAATATAATTATTAACAA-TAACTA
1 TAATATAATTATT-ACAACTAACTA
7557200 TAA-ATTAATTAT
1 TAATA-TAATTAT
7557212 ATTATAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.03
24 22 0.69
25 9 0.28
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (24 bp):
TAATATAATTATTACAACTAACTA
Found at i:7558317 original size:181 final size:181
Alignment explanation
Indices: 7557999--7558336 Score: 430
Period size: 182 Copynumber: 1.9 Consensus size: 181
7557989 TAACAATTTC
* ** * * *
7557999 AAAAATTAATAAGTAAGAGTTTAAAAAATGAATCTGTTTACTGAACCAGTTTAAATAGTTATGAC
1 AAAAATTAATAACTAAGAGTTTAAAAAATGAATCTGTTTACCAAACCAATTCAAATAGTTAAGAC
* * * * *
7558064 TATATGAACAATTCTATACTTCATATCATTATAACCTTTTGTTTTGTCATAAAACAATTATTTAT
66 TATATGAACAATTATATAATTCAAATCATTATAACCTTTTATCTTGTCATAAAACAATTATTTAT
*
7558129 GTTCATACAAGCTTATTCAAAATAAAAACAATAGGAATCTAATAATATTCA
131 ATTCATACAAGCTTATTCAAAATAAAAACAATAGGAATCTAATAATATTCA
* * * * *
7558180 AAAAATTAATAACTAAGGGATTTAAAAAATTAATTTGTTTGCCAAATCAATTCAAATAGTTAAGA
1 AAAAATTAATAACTAAGAG-TTTAAAAAATGAATCTGTTTACCAAACCAATTCAAATAGTTAAGA
* * *
7558245 CTATATGAACAATTATCTAATTCAAATCGTTATGACC-TTTATCTTGTCATAAAACAATT-TTCT
65 CTATATGAACAATTATATAATTCAAATCATTATAACCTTTTATCTTGTCATAAAACAATTATT-T
* *
7558308 CA-ATTCATACTAGCTTATTCGAAATAAAA
129 -ATATTCATACAAGCTTATTCAAAATAAAA
7558337 TAAAACAAAT
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
180 2 0.02
181 62 0.47
182 68 0.52
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (181 bp):
AAAAATTAATAACTAAGAGTTTAAAAAATGAATCTGTTTACCAAACCAATTCAAATAGTTAAGAC
TATATGAACAATTATATAATTCAAATCATTATAACCTTTTATCTTGTCATAAAACAATTATTTAT
ATTCATACAAGCTTATTCAAAATAAAAACAATAGGAATCTAATAATATTCA
Found at i:7558363 original size:181 final size:182
Alignment explanation
Indices: 7557994--7558364 Score: 414
Period size: 181 Copynumber: 2.1 Consensus size: 182
7557984 ACAATTAACA
* ** * *
7557994 ATTTC-AAAAATTAATAAGTAAGAGTTTAAAAAATGAATCTGTTTACTGAACCAGTTTAAATAGT
1 ATTTCAAAAAATTAATAACTAAGAGTTTAAAAAATGAATCTGTTTACCAAACCAATTCAAATAGT
* * * * * *
7558058 TATGACTATATGAACAATTCTATACTTCATATCATTATAACCTTTTGTTTTGTCATAAAACAATT
66 TAAGACTATATGAACAATTATATAATTCAAATCATTATAACCTTTTATCTTGTCATAAAACAATT
* **
7558123 ATTTATGTTCATACAAGCTTATTCAAAATAAAAACAATAGGAATCTAATAAT
131 ATTTATATTCATACAAGCTTATTCAAAATAAAAACAATACAAATCTAATAAT
* * * * *
7558175 A-TTCAAAAAATTAATAACTAAGGGATTTAAAAAATTAATTTGTTTGCCAAATCAATTCAAATAG
1 ATTTCAAAAAATTAATAACTAAGAG-TTTAAAAAATGAATCTGTTTACCAAACCAATTCAAATAG
* * *
7558239 TTAAGACTATATGAACAATTATCTAATTCAAATCGTTATGACC-TTTATCTTGTCATAAAACAAT
65 TTAAGACTATATGAACAATTATATAATTCAAATCATTATAACCTTTTATCTTGTCATAAAACAAT
* * * **
7558303 T-TTCTCA-ATTCATACTAGCTTATTCGAAATAAAATA-AA-ACAAATTTGTTAAT
130 TATT-T-ATATTCATACAAGCTTATTCAAAATAAAA-ACAATACAAATCTAATAAT
7558355 ATTTCAAAAA
1 ATTTCAAAAA
7558365 TAATTATGTT
Statistics
Matches: 157, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
180 15 0.10
181 73 0.46
182 69 0.44
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.36
Consensus pattern (182 bp):
ATTTCAAAAAATTAATAACTAAGAGTTTAAAAAATGAATCTGTTTACCAAACCAATTCAAATAGT
TAAGACTATATGAACAATTATATAATTCAAATCATTATAACCTTTTATCTTGTCATAAAACAATT
ATTTATATTCATACAAGCTTATTCAAAATAAAAACAATACAAATCTAATAAT
Found at i:7558490 original size:156 final size:155
Alignment explanation
Indices: 7558199--7558521 Score: 339
Period size: 156 Copynumber: 2.1 Consensus size: 155
7558189 TAACTAAGGG
* * * * * *
7558199 ATTTAAAAAATTAATTTGTTTGCCAAATCAATTCAAATAGTTAAGACTATATGAACAATTATCTA
1 ATTTCAAAAA-TAATTTGTTTACCAAACCAATTCAAAAAATTAAGACTATATGAACAATTATATA
*
7558264 ATTCAAATCGTTATGACCTTTATCTTGTCATAAAACAATTTTCTCAATTCATACTAGCTTATTCG
65 ATTCAAATCATTATGACCTTTATCTTGTCATAAAACAATTTTCTCAATTCATACTAGCTTATTCG
* *
7558329 AAATAAAATAAAACAAATTTGTTAAT
130 AAATAAAATAAAACAAATCTATTAAT
* * *
7558355 ATTTCAAAAATAATTATGTTTACCTAACCAATTCAAAAAATT-ATACTATTTGAACAATTATATA
1 ATTTCAAAAATAATT-TGTTTACCAAACCAATTCAAAAAATTAAGACTATATGAACAATTATATA
* * * * * ** *
7558419 TTTCAAATCATTATTACTTTTTGTTTTGTCATAAAACAAATGTTT-T-TGTTCATA-TAAGTTTA
65 ATTCAAATCATTATGAC-CTTTATCTTGTCATAAAAC-AAT-TTTCTCAATTCATACT-AGCTTA
* * * * *
7558481 TTTGGAATAAAGTAATACTAATCTATTAAT
126 TTCGAAATAAAATAAAACAAATCTATTAAT
7558511 ATTTCAAAAAT
1 ATTTCAAAAAT
7558522 TAATAAGTGA
Statistics
Matches: 137, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
155 39 0.28
156 91 0.66
157 4 0.03
158 3 0.02
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.41
Consensus pattern (155 bp):
ATTTCAAAAATAATTTGTTTACCAAACCAATTCAAAAAATTAAGACTATATGAACAATTATATAA
TTCAAATCATTATGACCTTTATCTTGTCATAAAACAATTTTCTCAATTCATACTAGCTTATTCGA
AATAAAATAAAACAAATCTATTAAT
Found at i:7558676 original size:177 final size:176
Alignment explanation
Indices: 7558386--7558706 Score: 428
Period size: 177 Copynumber: 1.8 Consensus size: 176
7558376 ACCTAACCAA
*
7558386 TTCAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCAT
1 TTCAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATGACTTTTTGTTTTGTCAT
* * * * * *
7558451 AAAACAAATGTTTTTGTTCATATAAGTTTATTTGGAATAAAGTAATACTAATCTATTAATATTTC
66 AAAACAAATGTTTCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATCTATTAATATTTC
7558516 AAAAATTAATAAGTGATTTAAAAAATAAATATATGTATCAAACTAG
131 AAAAATTAATAAGTGATTTAAAAAATAAATATATGTATCAAACTAG
* ** * *
7558562 TTCAAAAAGTTATGACTATTTGAGTAATTACT-TATTTCAAATCGTTATGACTTTTTGTTTTGTT
1 TTCAAAAAATTAT-ACTATTTGAACAATTA-TATATTTCAAATCATTATGACTTTTTGTTTTGTC
* * * * * *
7558626 ATAAAATAATTGTTTCTATTTATACAAGCTTATTTAGATTAAAATAATACTAATTTGTTAATATT
64 ATAAAACAAATGTTTCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATCTATTAATATT
** *
7558691 TTGACAATTAATAAGT
129 TCAAAAATTAATAAGT
7558707 AAAAAATTTT
Statistics
Matches: 122, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
176 12 0.10
177 109 0.89
178 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (176 bp):
TTCAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATGACTTTTTGTTTTGTCAT
AAAACAAATGTTTCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATCTATTAATATTTC
AAAAATTAATAAGTGATTTAAAAAATAAATATATGTATCAAACTAG
Found at i:7559673 original size:21 final size:21
Alignment explanation
Indices: 7559649--7559714 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
7559639 ATATAATCTA
*
7559649 TAATATAATTATTTTAATAAT
1 TAATATAATTATATTAATAAT
* * *
7559670 TAATACAAATATAATAATAAT
1 TAATATAATTATATTAATAAT
7559691 TAATATTAATTATATTAATAAT
1 TAATA-TAATTATATTAATAAT
7559713 TA
1 TA
7559715 CTTATTAATG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATATAATTATATTAATAAT
Found at i:7559732 original size:22 final size:22
Alignment explanation
Indices: 7559664--7559741 Score: 56
Period size: 22 Copynumber: 3.6 Consensus size: 22
7559654 TAATTATTTT
**
7559664 AATAATTAATACAAAT-ATA-A
1 AATAATTAATATTAATGATATA
* *
7559684 TAATAATTAATATTAATTATATT
1 -AATAATTAATATTAATGATATA
*
7559707 AATAATTACTTATTAATGA-ATA
1 AATAATTA-ATATTAATGATATA
*
7559729 AATAAAT-ATATTA
1 AATAATTAATATTA
7559742 TTTAAGATAA
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
20 5 0.11
21 14 0.30
22 19 0.41
23 8 0.17
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (22 bp):
AATAATTAATATTAATGATATA
Found at i:7560125 original size:26 final size:26
Alignment explanation
Indices: 7560079--7560133 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
7560069 AATTACAATT
7560079 TTATAAGCATTAAAATTATAATATTA
1 TTATAAGCATTAAAATTATAATATTA
*
7560105 TTATATGC-TTAAAATTAATAATATTA
1 TTATAAGCATTAAAATT-ATAATATTA
7560131 TTA
1 TTA
7560134 ATAATTGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (26 bp):
TTATAAGCATTAAAATTATAATATTA
Found at i:7560152 original size:26 final size:26
Alignment explanation
Indices: 7560087--7560159 Score: 69
Period size: 25 Copynumber: 2.8 Consensus size: 26
7560077 TTTTATAAGC
* *
7560087 ATTAAAAT-TATAATATTATTATATG
1 ATTAAAATAAATAATATTATTATATA
* *
7560112 CTTAAAATTAATAATATTATTA-ATA
1 ATTAAAATAAATAATATTATTATATA
*
7560137 ATTGAAATAAATTAATCATTATT
1 ATTAAAATAAA-TAAT-ATTATT
7560160 TATTTTTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 17 0.44
26 16 0.41
27 6 0.15
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (26 bp):
ATTAAAATAAATAATATTATTATATA
Found at i:7560851 original size:21 final size:20
Alignment explanation
Indices: 7560827--7560873 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
7560817 ATTTATAGTT
*
7560827 ATTATTAATAATTATATTATA
1 ATTATT-ATAACTATATTATA
*
7560848 ATTAGTTGTAACTATATTATA
1 ATTA-TTATAACTATATTATA
7560869 ATTAT
1 ATTAT
7560874 AAATTGAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 20 0.87
22 2 0.09
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
ATTATTATAACTATATTATA
Found at i:7561033 original size:18 final size:17
Alignment explanation
Indices: 7561003--7561052 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
7560993 TAAAATAGTT
*
7561003 TAATATCATTATATGAATA
1 TAATATTATTATAT-AA-A
7561022 TAAT-TTATTATATAAA
1 TAATATTATTATATAAA
7561038 TAATATTA-TATATAA
1 TAATATTATTATATAA
7561053 TTAACATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 12 0.41
17 5 0.17
18 8 0.28
19 4 0.14
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (17 bp):
TAATATTATTATATAAA
Found at i:7561277 original size:22 final size:22
Alignment explanation
Indices: 7561246--7561288 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7561236 AATATAAACA
*
7561246 ATTATTATAATTACAATATTTT
1 ATTATAATAATTACAATATTTT
**
7561268 ATTATAATAATTTTAATATTT
1 ATTATAATAATTACAATATTT
7561289 ATAAATATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTATAATAATTACAATATTTT
Found at i:7561702 original size:22 final size:23
Alignment explanation
Indices: 7561646--7561702 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 23
7561636 AATTCTAATT
* *
7561646 ATTAAGTTAT-AATAATAATAAT
1 ATTAAATTATGAATAATAATAAA
7561668 ATT--ATTATG--TAATAA-AAA
1 ATTAAATTATGAATAATAATAAA
7561686 ATTAAATTATGAATAAT
1 ATTAAATTATGAATAAT
7561703 TTAATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
18 5 0.18
19 6 0.21
20 10 0.36
22 7 0.25
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.40
Consensus pattern (23 bp):
ATTAAATTATGAATAATAATAAA
Found at i:7562077 original size:28 final size:28
Alignment explanation
Indices: 7562024--7562080 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
7562014 TTTTAGCTTT
* *
7562024 TATTTAATTAATTGTTAATTAAATATTA
1 TATTTAATTAATTGATAAATAAATATTA
*
7562052 TATTTATTTAATT-ATAAAT-AATA-TA
1 TATTTAATTAATTGATAAATAAATATTA
7562077 TATT
1 TATT
7562081 ATTCAATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 6 0.23
26 4 0.15
27 4 0.15
28 12 0.46
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
TATTTAATTAATTGATAAATAAATATTA
Found at i:7562993 original size:10 final size:10
Alignment explanation
Indices: 7562962--7563008 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
7562952 ATAAATAGAA
7562962 TTATATAAAT
1 TTATATAAAT
* *
7562972 TGATTTAAAT
1 TTATATAAAT
7562982 TTATATAAAT
1 TTATATAAAT
7562992 TTA-ATAATAT
1 TTATATAA-AT
7563002 TTATATA
1 TTATATA
7563009 TTGTTTGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
9 4 0.13
10 24 0.77
11 3 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
TTATATAAAT
Found at i:7563638 original size:13 final size:13
Alignment explanation
Indices: 7563620--7563648 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7563610 TACTATTAGT
7563620 TTAACAATTTGTA
1 TTAACAATTTGTA
7563633 TTAACAATTTGTA
1 TTAACAATTTGTA
7563646 TTA
1 TTA
7563649 GTTTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTAACAATTTGTA
Done.