Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 43 of 106
Found at i:7565160 original size:24 final size:24
Alignment explanation
Indices: 7565133--7565181 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7565123 GTATTAATTT
7565133 TAATACAATATATAATAATATATA
1 TAATACAATATATAATAATATATA
* * * *
7565157 TAATATAATATTTATTATTATATA
1 TAATACAATATATAATAATATATA
7565181 T
1 T
7565182 TAATTAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
TAATACAATATATAATAATATATA
Found at i:7565241 original size:23 final size:21
Alignment explanation
Indices: 7565214--7565289 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 21
7565204 TAATAAATTA
7565214 TTATTATAATTAAAAATTGATAT
1 TTATTATAATT-AAAATT-ATAT
*
7565237 TTATTATAATATCAAATTCTTATAT
1 TTATTATAAT-T-AAA--ATTATAT
* *
7565262 TAATTAAAATTAAAATTATAT
1 TTATTATAATTAAAATTATAT
7565283 ATTATTA
1 -TTATTA
7565290 AACAATTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
21 6 0.14
22 5 0.12
23 13 0.30
24 5 0.12
25 12 0.28
26 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (21 bp):
TTATTATAATTAAAATTATAT
Found at i:7565403 original size:15 final size:14
Alignment explanation
Indices: 7565374--7565409 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7565364 ATATATATTA
*
7565374 TAATTACTTTAAAT
1 TAATTATTTTAAAT
7565388 TAATTATTTATAAAT
1 TAATTATTT-TAAAT
7565403 TAATTAT
1 TAATTAT
7565410 AATAATAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATTATTTTAAAT
Found at i:7565843 original size:22 final size:22
Alignment explanation
Indices: 7565817--7565873 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
7565807 ATATAATAAA
7565817 ATAATTATATATATTACTTT-T
1 ATAATTATATATATTACTTTAT
*
7565838 -T-ATAATATATATTACTTTAT
1 ATAATTATATATATTACTTTAT
7565858 A-AATTCATATATATTA
1 ATAATT-ATATATATTA
7565874 TAATAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 16 0.53
20 2 0.07
21 2 0.07
22 10 0.33
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTATATATATTACTTTAT
Found at i:7566948 original size:19 final size:18
Alignment explanation
Indices: 7566891--7566953 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 18
7566881 ATTAAAAATT
*
7566891 ATAATAACTAATTAATATAA
1 ATAATAA-TAAGTAAT-TAA
7566911 ATATATAATAAG-AATTTAA
1 ATA-ATAATAAGTAA-TTAA
7566930 ATTAATAATAAGTAATTAA
1 A-TAATAATAAGTAATTAA
7566949 TATAA
1 -ATAA
7566954 ATATTAGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
19 21 0.57
20 12 0.32
21 4 0.11
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.37
Consensus pattern (18 bp):
ATAATAATAAGTAATTAA
Found at i:7567109 original size:27 final size:28
Alignment explanation
Indices: 7567052--7567108 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
7567042 TATTTTTTAA
* * *
7567052 TTAATTTACTTATTATATAATTAAAATT
1 TTAATTAAATTATTATATAAGTAAAATT
7567080 TTAATTAAATTATTA-ATAAGTATAAATT
1 TTAATTAAATTATTATATAAGTA-AAATT
7567108 T
1 T
7567109 ATTTATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (28 bp):
TTAATTAAATTATTATATAAGTAAAATT
Found at i:7567953 original size:14 final size:13
Alignment explanation
Indices: 7567885--7567965 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 13
7567875 ATTGTTCATT
*
7567885 TTAATTAATATTCA
1 TTAA-TAATATTAA
7567899 TT-ATAA-ATTAA
1 TTAATAATATTAA
*
7567910 -T-ATTATACTTAA
1 TTAATAATA-TTAA
7567922 TT-ATAATATTAA
1 TTAATAATATTAA
7567934 --AATAATCATTAA
1 TTAATAAT-ATTAA
7567946 TTAATAATGATTTAA
1 TTAATAAT-A-TTAA
7567961 TTAAT
1 TTAAT
7567966 TAAATAATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
10 4 0.07
11 10 0.18
12 16 0.29
13 7 0.13
14 9 0.16
15 9 0.16
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (13 bp):
TTAATAATATTAA
Found at i:7567973 original size:23 final size:23
Alignment explanation
Indices: 7567941--7567990 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7567931 TAAAATAATC
*
7567941 ATTAATTAATAATGATTTAAT-TA
1 ATTAAATAATAAT-ATTTAATATA
* *
7567964 ATTAAATAATTATATTTAGTATA
1 ATTAAATAATAATATTTAATATA
7567987 ATTA
1 ATTA
7567991 CGAATAACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
ATTAAATAATAATATTTAATATA
Found at i:7568263 original size:26 final size:26
Alignment explanation
Indices: 7568225--7568300 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
7568215 TATTATTCTA
* *
7568225 TATGTTCTGAATATATAATAATATAT
1 TATGTTATTAATATATAATAATATAT
* *
7568251 TATGTTATTAATAAATCATAATATAT
1 TATGTTATTAATATATAATAATATAT
*
7568277 TATATTATATAATAT-TAAATAATA
1 TATGTTAT-TAATATAT-AATAATA
7568301 ATATCATATT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 30 0.73
27 11 0.27
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (26 bp):
TATGTTATTAATATATAATAATATAT
Found at i:7568309 original size:18 final size:17
Alignment explanation
Indices: 7568234--7568316 Score: 53
Period size: 18 Copynumber: 4.7 Consensus size: 17
7568224 ATATGTTCTG
7568234 AATATATAATAAT-ATAT
1 AATAT-TAATAATAATAT
* * *
7568251 TATGTTATTAATAAATCAT
1 AATATTAATAAT-AAT-AT
* *
7568270 AATA-TATTATATTATAT
1 AATATTAATA-ATAATAT
7568287 AATATTAAATAATAATAT
1 AATATT-AATAATAATAT
*
7568305 CATATTAATAAT
1 AATATTAATAAT
7568317 TGTCTACATT
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
16 6 0.12
17 15 0.29
18 21 0.41
19 9 0.18
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (17 bp):
AATATTAATAATAATAT
Found at i:7568468 original size:20 final size:21
Alignment explanation
Indices: 7568435--7568474 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7568425 AATATAGAAT
* *
7568435 ATTTTATTACTTATTTAATAA
1 ATTTAATTACTTATATAATAA
7568456 ATTTAATTA-TTATATAATA
1 ATTTAATTACTTATATAATA
7568475 TTATTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTAATTACTTATATAATAA
Found at i:7569782 original size:162 final size:163
Alignment explanation
Indices: 7569586--7569916 Score: 409
Period size: 162 Copynumber: 2.0 Consensus size: 163
7569576 TGAACTGGTC
* * ** * * *
7569586 ATAATTATTTAAACTAGTTTGGTAAATAGATTTATTTTTTAAATCGCTTAGTTATTAATTTTTTA
1 ATAATTATTTAAACTAGTTTGATAAATAGATTTATTTTTTAAATCACCAACTTATCAATTTTTGA
* * * *
7569651 AATAGTAATAAATTAGTATTATTTTATTTT-AATAAGCTTGTA-CGATCAAAAATAATTGTTTTA
66 AATAGTAATAAAGTAATATTATTTTATTTTGAATAAG-TTGTATCGAACAAAAACAATTGTTTTA
7569714 TAATAAAACAAAAAGTCATAATGATTTAAAATAA
130 TAATAAAACAAAAAGTCATAATGATTTAAAATAA
* *
7569748 ATAATTATTTGAACT-GATTTGATAAACT-GATTTATTTTTTAAATCACCAACTTCTCAATTTTT
1 ATAATTATTTAAACTAG-TTTGATAAA-TAGATTTATTTTTTAAATCACCAACTTATCAATTTTT
** * * **
7569811 GAAATAGTAATAAAGTAATATTATTTTATTTTGGGTAAGTTTTATTGAACTGAAACAATTGTTTT
64 GAAATAGTAATAAAGTAATATTATTTTATTTTGAATAAGTTGTATCGAACAAAAACAATTGTTTT
* * *
7569876 ATAATAAAACAAAAGGTCATAATGATTTTAAATAG
129 ATAATAAAACAAAAAGTCATAATGATTTAAAATAA
7569911 ATAATT
1 ATAATT
7569917 GTTCAAATAG
Statistics
Matches: 143, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
161 1 0.01
162 84 0.59
163 58 0.41
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (163 bp):
ATAATTATTTAAACTAGTTTGATAAATAGATTTATTTTTTAAATCACCAACTTATCAATTTTTGA
AATAGTAATAAAGTAATATTATTTTATTTTGAATAAGTTGTATCGAACAAAAACAATTGTTTTAT
AATAAAACAAAAAGTCATAATGATTTAAAATAA
Found at i:7570088 original size:19 final size:19
Alignment explanation
Indices: 7570064--7570102 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7570054 TAATAATCAT
*
7570064 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
7570083 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
7570102 T
1 T
7570103 GGCTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:7570224 original size:23 final size:23
Alignment explanation
Indices: 7570181--7570225 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7570171 TTTTCTATTA
**
7570181 TAATTATAATAAATATTAATAAT
1 TAATTATAATAAATACAAATAAT
*
7570204 TAATTATAATTAATACAAATAA
1 TAATTATAATAAATACAAATAA
7570226 ATCTCTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
TAATTATAATAAATACAAATAAT
Found at i:7570482 original size:24 final size:24
Alignment explanation
Indices: 7570434--7570480 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
7570424 ATTATTATAG
*
7570434 AATTACTATATAATAAATTTAAAT
1 AATTACTATATAATAAAATTAAAT
7570458 AATTACTAT-TAAATACAAATTAA
1 AATTACTATAT-AATA-AAATTAA
7570481 TACTTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 13 0.65
25 6 0.30
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (24 bp):
AATTACTATATAATAAAATTAAAT
Found at i:7570519 original size:14 final size:14
Alignment explanation
Indices: 7570500--7570529 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7570490 AATAATTAAG
*
7570500 ATAATAATATATTT
1 ATAATAATATAATT
7570514 ATAATAATATAATT
1 ATAATAATATAATT
7570528 AT
1 AT
7570530 TTAGTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATAATATAATT
Found at i:7570589 original size:23 final size:22
Alignment explanation
Indices: 7570518--7570597 Score: 63
Period size: 23 Copynumber: 3.4 Consensus size: 22
7570508 ATATTTATAA
7570518 TAATATAATTATTTAGTTTTATATT
1 TAAT-TAATTATTTA-TTTTA-ATT
* *
7570543 TAATTAATTAATGATTATCT-ATT
1 TAATTAATTATTTATT-T-TAATT
*
7570566 TACTTAATTATTTATTCTTAATT
1 TAATTAATTATTTATT-TTAATT
*
7570589 TAAATAATT
1 TAATTAATT
7570598 GCAATGGTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
22 1 0.02
23 29 0.66
24 9 0.20
25 5 0.11
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.56
Consensus pattern (22 bp):
TAATTAATTATTTATTTTAATT
Found at i:7570707 original size:22 final size:22
Alignment explanation
Indices: 7570682--7570730 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
7570672 TAATATATTT
*
7570682 TAAATTTAGTA-TTAAAATTAAA
1 TAAATTTAATATTTAAAA-TAAA
*
7570704 TAAA-ATAATATTTAAAATAAA
1 TAAATTTAATATTTAAAATAAA
7570725 TAAATT
1 TAAATT
7570731 ATTAATCATG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
TAAATTTAATATTTAAAATAAA
Found at i:7570762 original size:16 final size:16
Alignment explanation
Indices: 7570699--7570766 Score: 57
Period size: 16 Copynumber: 4.1 Consensus size: 16
7570689 AGTATTAAAA
* *
7570699 TTAAATAAAATAATAT
1 TTAAATAAATTATTAT
*
7570715 TTAAAATAAATAAATTA-
1 TT-AAATAAAT-TATTAT
*
7570732 TTAATCATGAATTATTAT
1 TTAA--ATAAATTATTAT
7570750 TTAAATAAATTATTAT
1 TTAAATAAATTATTAT
7570766 T
1 T
7570767 ATCTTTATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
16 16 0.39
17 13 0.32
18 12 0.29
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (16 bp):
TTAAATAAATTATTAT
Found at i:7570780 original size:20 final size:19
Alignment explanation
Indices: 7570742--7570784 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
7570732 TTAATCATGA
7570742 ATTATTATTTAAATAAATT
1 ATTATTATTTAAATAAATT
* *
7570761 ATTATTATCTTTATTAAATT
1 ATTATTAT-TTAAATAAATT
7570781 ATTA
1 ATTA
7570785 ATTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTATTATTTAAATAAATT
Found at i:7570865 original size:21 final size:20
Alignment explanation
Indices: 7570805--7570867 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
7570795 AATGAATTCT
*
7570805 TTATAT-TATAAATTAAATATA
1 TTATATATATAAATT-TATA-A
7570826 TTAT-TA-AT-AATTATATAA
1 TTATATATATAAATT-TATAA
7570844 TTATATATATAAATTTACTAA
1 TTATATATATAAATTTA-TAA
7570865 TTA
1 TTA
7570868 ATCAATCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
18 5 0.14
19 10 0.28
20 7 0.19
21 14 0.39
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATATATATAAATTTATAA
Found at i:7571162 original size:41 final size:41
Alignment explanation
Indices: 7571077--7571156 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 41
7571067 TATGTATCAA
* *
7571077 ATTATTAATGTAGAATTAATTAATATAATATTAAATCAAAT
1 ATTATTAATATAGAATTAATTAATATAATATAAAATCAAAT
7571118 ATTATTAATAT-GAA-TAATTAATATATAATATAATAATCA
1 ATTATTAATATAGAATTAATT-A-ATATAATATAA-AATCA
7571157 TTATTAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
39 5 0.15
40 4 0.12
41 20 0.59
42 5 0.15
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.41
Consensus pattern (41 bp):
ATTATTAATATAGAATTAATTAATATAATATAAAATCAAAT
Found at i:7571424 original size:19 final size:19
Alignment explanation
Indices: 7571379--7571431 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
7571369 GTTATTTGTT
* * *
7571379 TATTATCTAATATTCATTTA
1 TATTAT-TAATAATAATTAA
*
7571399 TAATATTAATAATAATTAA
1 TATTATTAATAATAATTAA
*
7571418 TATTATTATTAATA
1 TATTATTAATAATA
7571432 TAATTATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 22 0.81
20 5 0.19
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATTAATAATAATTAA
Found at i:7571443 original size:21 final size:21
Alignment explanation
Indices: 7571402--7571452 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
7571392 TCATTTATAA
*
7571402 TATTAATAATAATTAATATTAT
1 TATTAAT-ATAATTAATATTAC
7571424 TATTAATATAATT-ATAATTAC
1 TATTAATATAATTAAT-ATTAC
*
7571445 TACTAATA
1 TATTAATA
7571453 AAATATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 17 0.65
22 7 0.27
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TATTAATATAATTAATATTAC
Found at i:7571662 original size:27 final size:28
Alignment explanation
Indices: 7571627--7571682 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
7571617 AAATATAATT
7571627 TAATAAATATTGATATT-ATTAATATTAA
1 TAATAAATATTGATATTAATT-ATATTAA
*
7571655 TAAT-AATATTGTTATTAATTATATTAA
1 TAATAAATATTGATATTAATTATATTAA
7571682 T
1 T
7571683 TAAAATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (28 bp):
TAATAAATATTGATATTAATTATATTAA
Found at i:7571689 original size:27 final size:26
Alignment explanation
Indices: 7571622--7571689 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
7571612 TCAAAAAATA
7571622 TAAT-TTAAT-AAATATTGATATTAT
1 TAATATTAATAAAATATTGATATTAT
*
7571646 TAATATTAATAATAATATTGTTATTAAT
1 TAATATTAATAA-AATATTGATATT-AT
7571674 T-ATATTAATTAAAATA
1 TAATATTAA-TAAAATA
7571690 AATAATTATA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 4 0.11
25 5 0.13
26 1 0.03
27 22 0.58
28 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (26 bp):
TAATATTAATAAAATATTGATATTAT
Found at i:7571695 original size:22 final size:22
Alignment explanation
Indices: 7571670--7571745 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
7571660 ATATTGTTAT
7571670 TAATTATATTAATTAAAATAAA
1 TAATTATATTAATTAAAATAAA
*
7571692 TAATTATAATT-ATTTAAAT-AA
1 TAATTAT-ATTAATTAAAATAAA
* *
7571713 TAATTTAAATTTATTTAATAATAGAA
1 TAA-TTATA-TTAATTAA-AATA-AA
7571739 TAATTAT
1 TAATTAT
7571746 TAATAATATT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
21 6 0.14
22 19 0.45
23 6 0.14
24 3 0.07
25 3 0.07
26 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (22 bp):
TAATTATATTAATTAAAATAAA
Found at i:7571859 original size:16 final size:15
Alignment explanation
Indices: 7571839--7571917 Score: 60
Period size: 16 Copynumber: 5.4 Consensus size: 15
7571829 AATATAGTAT
*
7571839 AAATATTATATACTA
1 AAATATTATATAATA
*
7571854 ATAATA-AATATAATA
1 A-AATATTATATAATA
*
7571869 ATATATTA-ATTATATA
1 AAATATTATA-TA-ATA
7571885 AAATATTA-ATAATA
1 AAATATTATATAATA
*
7571899 AAATATT-T-TAATT
1 AAATATTATATAATA
7571912 AAATAT
1 AAATAT
7571918 ATTAAAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
13 10 0.19
14 14 0.26
15 14 0.26
16 15 0.28
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATATTATATAATA
Found at i:7571868 original size:5 final size:5
Alignment explanation
Indices: 7571809--7571868 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
7571799 TATTGTTATA
* * * * *
7571809 AATAT AAAAT AATAT AGTAT AATAT AGTAT AAATAT TATAT ACTAAT AATA-
1 AATAT AATAT AATAT AATAT AATAT AATAT -AATAT AATAT AAT-AT AATAT
7571860 AATAT AATA
1 AATAT AATA
7571869 ATATATTAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
4 4 0.10
5 30 0.71
6 8 0.19
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (5 bp):
AATAT
Found at i:7571897 original size:19 final size:19
Alignment explanation
Indices: 7571804--7571897 Score: 51
Period size: 19 Copynumber: 5.1 Consensus size: 19
7571794 TTTATTATTG
*
7571804 TTATA-AAT-ATAAAATAA
1 TTATATAATAATATAATAA
7571821 TATAGTATAATATAGTATAA-ATA
1 T-TA-TATAATA-A-TATAATA-A
*
7571844 TTATATACT-A-ATAATAA
1 TTATATAATAATATAATAA
*
7571861 --ATATAATAATATATTAA
1 TTATATAATAATATAATAA
7571878 TTATATAA-AATATTAATAA
1 TTATATAATAATA-TAATAA
7571897 T
1 T
7571898 AAAATATTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 24
0.67 0.06 0.27
Matches are distributed among these distances:
15 6 0.10
16 1 0.02
17 12 0.20
18 7 0.12
19 15 0.25
20 3 0.05
21 5 0.08
22 4 0.07
23 6 0.10
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.40
Consensus pattern (19 bp):
TTATATAATAATATAATAA
Found at i:7571914 original size:14 final size:14
Alignment explanation
Indices: 7571863--7571905 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
7571853 AATAATAAAT
*
7571863 ATAATAATATATTA
1 ATAATAAAATATTA
7571877 ATTATATAAAATATTA
1 A-TA-ATAAAATATTA
7571893 ATAATAAAATATT
1 ATAATAAAATATT
7571906 TTAATTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 11 0.42
15 4 0.15
16 11 0.42
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAATAAAATATTA
Found at i:7571915 original size:13 final size:13
Alignment explanation
Indices: 7571846--7571922 Score: 50
Period size: 13 Copynumber: 5.7 Consensus size: 13
7571836 TATAAATATT
*
7571846 ATATACTAATAATA
1 ATATATTAATAA-A
*
7571860 A-ATA-TAATAAT
1 ATATATTAATAAA
7571871 ATATTAATTATATAAA
1 ATA-T-ATTA-ATAAA
*
7571887 ATATTAATAATAAA
1 ATA-TATTAATAAA
* *
7571901 ATATTTTAATTAA
1 ATATATTAATAAA
7571914 ATATATTAA
1 ATATATTAA
7571923 AATTTATTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
11 1 0.02
12 7 0.14
13 19 0.37
14 10 0.20
15 5 0.10
16 9 0.18
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATATTAATAAA
Found at i:7572403 original size:14 final size:15
Alignment explanation
Indices: 7572377--7572421 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
7572367 TATTTTCACT
7572377 ATTTATATTTAATTA
1 ATTTATATTTAATTA
7572392 ATTTAT-TTTAATTA
1 ATTTATATTTAATTA
* *
7572406 AGTAATATTTGAATTA
1 ATTTATATTT-AATTA
7572422 CTTAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 12 0.46
15 9 0.35
16 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
ATTTATATTTAATTA
Found at i:7572967 original size:19 final size:19
Alignment explanation
Indices: 7572945--7573025 Score: 60
Period size: 19 Copynumber: 4.2 Consensus size: 19
7572935 TATTTGCTAA
7572945 TTATAATAAATTATAATAT
1 TTATAATAAATTATAATAT
* *
7572964 TTATGATAAA-TATTATA-
1 TTATAATAAATTATAATAT
*
7572981 TTA-AATAATTTAACTAATAT
1 TTATAATAAATT-A-TAATAT
*
7573001 AATTATTATAAATTATAATAAT
1 --TTATAATAAATTATAAT-AT
7573023 TTA
1 TTA
7573026 AATTTATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 15
0.68 0.10 0.22
Matches are distributed among these distances:
16 4 0.09
17 4 0.09
18 7 0.15
19 13 0.28
20 3 0.06
21 4 0.09
22 6 0.13
23 6 0.13
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (19 bp):
TTATAATAAATTATAATAT
Found at i:7573019 original size:16 final size:15
Alignment explanation
Indices: 7572943--7573029 Score: 50
Period size: 16 Copynumber: 5.3 Consensus size: 15
7572933 GTTATTTGCT
7572943 AATTATAATAAATTATA
1 AATTATAAT-AATT-TA
*
7572960 ATATTTATGATAAATATTA
1 A-A-TTATAAT-AAT-TTA
*
7572979 TATTA-AATAATTTA
1 AATTATAATAATTTA
* *
7572993 ACTAATATAATTATTATA
1 A--ATTATAATAATT-TA
7573011 AATTATAATAATTTA
1 AATTATAATAATTTA
7573026 AATT
1 AATT
7573030 TATTTTTATA
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
14 3 0.05
15 9 0.16
16 15 0.27
17 10 0.18
18 5 0.09
19 12 0.22
20 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (15 bp):
AATTATAATAATTTA
Found at i:7573209 original size:25 final size:23
Alignment explanation
Indices: 7573165--7573210 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
7573155 ATTAAGTAGG
7573165 ATAAATTTAATCTAATAATATTT
1 ATAAATTTAATCTAATAATATTT
*
7573188 ATAAATTATAATTTAAATAATAT
1 ATAAATT-TAATCT-AATAATAT
7573211 ACTTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 8 0.40
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAAATTTAATCTAATAATATTT
Found at i:7573541 original size:28 final size:27
Alignment explanation
Indices: 7573509--7573564 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
7573499 TAAATTGTAT
*
7573509 TAATAAT-TGTTATTAATTGATATAATTA
1 TAATAATAT-TTATTAATT-AAATAATTA
7573537 TAATAATATTTATTAATTAAATAATTA
1 TAATAATATTTATTAATTAAATAATTA
7573564 T
1 T
7573565 TATTATGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 9 0.35
28 16 0.62
29 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (27 bp):
TAATAATATTTATTAATTAAATAATTA
Found at i:7573804 original size:33 final size:33
Alignment explanation
Indices: 7573736--7573805 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 33
7573726 AAAACTATTA
* *
7573736 ATTATTTTATCAAATAAAATTTATATTATTTAT
1 ATTATTTTATCAAATAAAATTTATATTAATAAT
7573769 ATTATTTTAATACAAATAAAATTT-TA-TAATAAT
1 ATTATTTT-AT-CAAATAAAATTTATATTAATAAT
7573802 ATTA
1 ATTA
7573806 ACAATAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 17 0.52
34 4 0.12
35 12 0.36
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (33 bp):
ATTATTTTATCAAATAAAATTTATATTAATAAT
Found at i:7574879 original size:33 final size:29
Alignment explanation
Indices: 7574841--7574905 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 29
7574831 AACACTATTA
*
7574841 ATAAATTTAATTATTATTTATTAATAATTTAAT
1 ATAAATTAAATTA-TATTTA--AATAA-TTAAT
7574874 ATAAATTAAATTATATTTAAATAATTAAT
1 ATAAATTAAATTATATTTAAATAATTAAT
7574903 ATA
1 ATA
7574906 TTTAATATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 8 0.26
30 5 0.16
32 6 0.19
33 12 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
ATAAATTAAATTATATTTAAATAATTAAT
Found at i:7574924 original size:19 final size:18
Alignment explanation
Indices: 7574860--7574924 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 18
7574850 ATTATTATTT
7574860 ATTAATA-ATTTAATATAA
1 ATTAATATATTTAATAT-A
7574878 ATTAAATTATATTTAA-ATA
1 ATT-AA-TATATTTAATATA
7574897 ATTAATATATTTAATATA
1 ATTAATATATTTAATATA
*
7574915 GTTCAATATA
1 ATT-AATATA
7574925 ATCTTACATA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
17 9 0.22
18 10 0.24
19 12 0.29
20 4 0.10
21 6 0.15
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
ATTAATATATTTAATATA
Found at i:7575326 original size:18 final size:21
Alignment explanation
Indices: 7575279--7575369 Score: 59
Period size: 21 Copynumber: 4.4 Consensus size: 21
7575269 ATCTATTTCA
*
7575279 AATA-ATACTATAATATTATT
1 AATATATATTATAATATTATT
7575299 AATATATATTATAA-ATT-TT
1 AATATATATTATAATATTATT
*
7575318 AAT-TATATTTACTAATA-AATT
1 AATATATA-TTA-TAATATTATT
*
7575339 ATTATGATATTAGTAATTATTA-T
1 AATAT-ATATTA-TAA-TATTATT
*
7575362 ATTATATA
1 AATATATA
7575370 AATATAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
18 4 0.07
19 8 0.14
20 10 0.18
21 13 0.23
22 10 0.18
23 11 0.19
24 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AATATATATTATAATATTATT
Found at i:7575921 original size:16 final size:17
Alignment explanation
Indices: 7575877--7575923 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
7575867 TTTTTAATAT
7575877 TTATTAATT-TATTAACA
1 TTATTAATTATATT-ACA
*
7575894 TT-TTATTTATATTAC-
1 TTATTAATTATATTACA
7575909 TTATTAATTATATTA
1 TTATTAATTATATTA
7575924 AATAATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.08
16 18 0.69
17 6 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTAATTATATTACA
Found at i:7576005 original size:24 final size:25
Alignment explanation
Indices: 7575964--7576013 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
7575954 TTTAATATAA
* *
7575964 TTATTATAAATAACTAATTTTAAAT
1 TTATAATAAATAACTAATTATAAAT
*
7575989 TTATAATAAAT-ATTAATTATAAAT
1 TTATAATAAATAACTAATTATAAAT
7576013 T
1 T
7576014 GTCATAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATAATAAATAACTAATTATAAAT
Found at i:7577067 original size:14 final size:14
Alignment explanation
Indices: 7577032--7577075 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7577022 TTCATATTAA
7577032 ATTATTATTAATAT
1 ATTATTATTAATAT
*
7577046 GAAT-TTATTAATAT
1 -ATTATTATTAATAT
*
7577060 ATTATTATAAATAT
1 ATTATTATTAATAT
7577074 AT
1 AT
7577076 AAAAATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 2 0.08
14 21 0.84
15 2 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
ATTATTATTAATAT
Found at i:7577231 original size:28 final size:28
Alignment explanation
Indices: 7577167--7577231 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
7577157 AATATAATAT
**
7577167 TATATTTATTGTTTAATATATTTATTAA
1 TATATTTATTGTTTAATATACGTATTAA
*
7577195 TACTA-TTATTGTCTTATTATACGT-TTAA
1 TA-TATTTATTGT-TTAATATACGTATTAA
7577223 TATATTTAT
1 TATATTTAT
7577232 AAATAATTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.06
28 19 0.61
29 10 0.32
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (28 bp):
TATATTTATTGTTTAATATACGTATTAA
Found at i:7577494 original size:20 final size:18
Alignment explanation
Indices: 7577471--7577521 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 18
7577461 TATTTTAACA
7577471 TAATTAATTATATATAATAT
1 TAATTAATTATATAT-A-AT
*
7577491 TAATTTAA-TATGTATAAT
1 TAA-TTAATTATATATAAT
*
7577509 TATTTAATTATAT
1 TAATTAATTATAT
7577522 TAAAATTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 4 0.15
18 8 0.31
19 1 0.04
20 9 0.35
21 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTAATTATATATAAT
Found at i:7578528 original size:17 final size:17
Alignment explanation
Indices: 7578485--7578529 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7578475 AACAAGCTCG
7578485 AATAATTATGGTTATTTA
1 AATAATTAT-GTTATTTA
*
7578503 AACAATTAT-TTATTTAA
1 AATAATTATGTTATTT-A
7578520 AATAATTATG
1 AATAATTATG
7578530 ACCATTTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 6 0.26
17 9 0.39
18 8 0.35
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (17 bp):
AATAATTATGTTATTTA
Found at i:7578591 original size:182 final size:177
Alignment explanation
Indices: 7577952--7578917 Score: 518
Period size: 182 Copynumber: 5.4 Consensus size: 177
7577942 GAATAAATTA
* * ** *
7577952 AAATAGATT-TGGTTATTTAAACAATTATCTATTT-AAAGTCGTTATGACCTTTTGTTTTGTCAT
1 AAATA-ATTATGGCTATTTAAACAATTATTTATTTCAAA-TTATTATAACCTTTTGTTTTGTCAT
* **** * *** * * *
7578015 AAAACAATTGTTTCAGTTTATAAAAACTTATTTGAAATAAAATAATACTACTTTATTAATATTTT
64 AAAACAATTGTTTTACAACATAAAAGCTTATCCAAAATAAAATAATACCAATTTATTAATA-TTC
* * * * * * *
7578080 GAAAATTAATAAGCAAT-ATTTTTAAAAACTAAAATTGTTTTCCAAATCAGTTC
128 AAAAATTAATAA--TATGAATTTAAAAAAAT-AAATAGTTTACCAAA-CAGTTC
* * * ** * * * * * * *
7578133 AAATAATTATGGCTATTTGAATAAATATCAATCTCAAATTGTTTTGATC-TTTATTTTCTCATAA
1 AAATAATTATGGCTATTTAAACAATTATTTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
* * * ** ** * * * *
7578197 AATAATTATTTCT-TATTATATAAA-CTTAT-TTAGATAAAAATATTACTAATTTAATAATATTT
66 AACAATTGTTT-TACAACATA-AAAGCTTATCCAAAAT-AAAATAATACCAATTTATTAATA-TT
* *
7578259 CAAAAATTAATAAGA-G-A-TT-AAAAAA-AAATGTGTTTACCAAACCAGTTC
127 CAAAAATTAATAATATGAATTTAAAAAAATAAAT-AGTTTACCAAA-CAGTTC
* * * * * * * * * * **
7578307 AAAT-AGT-T---TATTTGAATAATTATTAATTTCAAATCATTTTGACATTTTCTTTTGTCGTGT
1 AAATAATTATGGCTATTTAAACAATTATTTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
* * * *** * **** * *
7578367 AATAATTGCTTCAGTTCATACAAGCTTATTTGGAAGAAAATAATACCAATTTATTAACATTCAAA
66 AACAATTGTTTTACAACATAAAAGCTTATCCAAAATAAAATAATACCAATTTATTAATATTC-AA
*
7578432 AAATTAATAATCATGAGATTTAAAAAAATAAATATGTTTACCAAACAAGCTC
130 AAATTAATAAT-ATGA-ATTTAAAAAAATAAATA-GTTTACCAAAC-AGTTC
* * * * * *
7578484 GAATAATTATGGTTATTTAAACAATTATTTATTTAAAATAATTATGACCATTTGTTTTGTCATAA
1 AAATAATTATGGCTATTTAAACAATTATTTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
*** * * * *
7578549 AACAATTGTTTTAGTTCATAAAAGTTTATCCAAAATAAAATAATACTACTTTAGTAATATTTCAA
66 AACAATTGTTTTACAACATAAAAGCTTATCCAAAATAAAATAATACCAATTTATTAATA-TTCAA
* *
7578614 AAATTAATAAGTAACT-AATTTAAAAGAATAAATCAGTTTACCCAATCAGTTC
130 AAATTAATAA-T-A-TGAATTTAAAAAAATAAAT-AGTTTA-CCAAACAGTTC
* * * * * *
7578666 AAATAATTATAGCCATTTAAACAACTATCTATTTCAAATTGTTATTACCTTTTGTTTTGTCATAA
1 AAATAATTATGGCTATTTAAACAATTATTTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
* * *** *
7578731 AACAATTGTTTTTCAACATACAAGCTTATTTGAAATAAAATAATACCAATTTATTAATATTTTAA
66 AACAATTGTTTTACAACATAAAAGCTTATCCAAAATAAAATAATACCAATTTATTAATA-TTCAA
* ** **
7578796 GAATTAAT-A-A-GACATTT-AAAAAATAAACTAGTTTATTGAATTAGTTC
130 AAATTAATAATATGA-ATTTAAAAAAATAAA-TAGTTTA-CCAAACAGTTC
* * * * *
7578843 AAATAGTTATGGCTATTTAAACAATTTTTTATTTCAAATTATTACAACCTTTTGTTCTATCATAA
1 AAATAATTATGGCTATTTAAACAATTATTTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
7578908 AACAATTGTT
66 AACAATTGTT
7578918 AATAATTTAA
Statistics
Matches: 619, Mismatches: 132, Indels: 72
0.75 0.16 0.09
Matches are distributed among these distances:
169 34 0.05
170 59 0.10
171 3 0.00
172 2 0.00
173 6 0.01
174 21 0.03
175 7 0.01
176 9 0.01
177 109 0.18
178 9 0.01
179 5 0.01
180 69 0.11
181 36 0.06
182 237 0.38
183 12 0.02
184 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
AAATAATTATGGCTATTTAAACAATTATTTATTTCAAATTATTATAACCTTTTGTTTTGTCATAA
AACAATTGTTTTACAACATAAAAGCTTATCCAAAATAAAATAATACCAATTTATTAATATTCAAA
AATTAATAATATGAATTTAAAAAAATAAATAGTTTACCAAACAGTTC
Found at i:7578987 original size:18 final size:19
Alignment explanation
Indices: 7578947--7578992 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
7578937 ATATATAAAT
* *
7578947 TAATTATAATATAATAATA
1 TAATTATAAAATAAGAATA
7578966 -AATTATAAAAT-AGAATA
1 TAATTATAAAATAAGAATA
*
7578983 TAATTTTAAA
1 TAATTATAAA
7578993 TGTTATATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TAATTATAAAATAAGAATA
Found at i:7580233 original size:16 final size:15
Alignment explanation
Indices: 7580197--7580239 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
7580187 TAAATAATAA
7580197 TATAATTATAA-TAT
1 TATAATTATAATTAT
7580211 TAT-ATTATAATTAT
1 TATAATTATAATTAT
7580225 TATAAATTATAATTA
1 TAT-AATTATAATTA
7580240 ACTTATTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 7 0.27
14 9 0.35
16 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATAATTATAATTAT
Found at i:7580303 original size:12 final size:12
Alignment explanation
Indices: 7580288--7580341 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
7580278 ATATAATAAC
7580288 AATATTAATTAT
1 AATATTAATTAT
*
7580300 AATATTTATTAT
1 AATATTAATTAT
*
7580312 AA-ATTATTTAT
1 AATATTAATTAT
*
7580323 AATTACT-ATTAT
1 AA-TATTAATTAT
7580335 AATATTA
1 AATATTA
7580342 TCTAACATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
11 12 0.36
12 19 0.58
13 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
AATATTAATTAT
Found at i:7581033 original size:179 final size:180
Alignment explanation
Indices: 7580711--7581098 Score: 541
Period size: 179 Copynumber: 2.1 Consensus size: 180
7580701 AAAGTAGTTG
* *
7580711 TTGGAATATTATTAAATTAGTATTATTTTATGTTGAATAAGCTTATATAGACAGAAAAAAATTGG
1 TTGGAATATTAATAAATTA--ATTATTTTATGTAGAATAAGCTTATATAGACAGAAAAAAATTGG
* * *
7580776 TTCAACACAAAACAAAAGGTTATAACTATTTGAAATAGATAATTATTCAAATAGTCATATATATT
64 TTCAACACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCAGATATATT
** *
7580841 TGAACATGTTCAAAAAATAAATTTA-TTTTTAAAATTTTTACTTATTAAATT
129 CAAACATGTTCAAAAAACAAATTTATTTTTTAAAATTTTTACTTATTAAATT
* * * *
7580892 TTGGAATATTAATAAATGTAATTATTTTAT-TCAGAATAAGCTTGTATGGATAG-AAACAATTGG
1 TTGGAATATTAATAAAT-TAATTATTTTATGT-AGAATAAGCTTATATAGACAGAAAAAAATTGG
* * * *
7580955 TTTATCATAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTCAGA-ACTAT
64 TTCAACACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCAGATA-TAT
7581019 TCAAACATGTTCAAAAAACAAATTTATTTTTTAAAATTTTTACTTATTAAATT
128 TCAAACATGTTCAAAAAACAAATTTATTTTTTAAAATTTTTACTTATTAAATT
*
7581072 TTGGAATATTAATTAATTTAATTATTT
1 TTGGAATATTAA-TAAATTAATTATTT
7581099 CAAATAATTA
Statistics
Matches: 185, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
178 1 0.01
179 88 0.48
180 74 0.40
181 20 0.11
182 2 0.01
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (180 bp):
TTGGAATATTAATAAATTAATTATTTTATGTAGAATAAGCTTATATAGACAGAAAAAAATTGGTT
CAACACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCAGATATATTCA
AACATGTTCAAAAAACAAATTTATTTTTTAAAATTTTTACTTATTAAATT
Found at i:7581246 original size:16 final size:16
Alignment explanation
Indices: 7581199--7581278 Score: 76
Period size: 15 Copynumber: 5.1 Consensus size: 16
7581189 TATATCTAAG
7581199 TAAAAATTAAATATTAT
1 TAAAAATTAAATA-TAT
*
7581216 TAAAAATGAAA-ATAT
1 TAAAAATTAAATATAT
*
7581231 TAAAAATTTAATATAT
1 TAAAAATTAAATATAT
**
7581247 TTTAAATT-AATA-AT
1 TAAAAATTAAATATAT
* *
7581261 TAAATATTAAAAATAT
1 TAAAAATTAAATATAT
7581277 TA
1 TA
7581279 CTTAATAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
14 7 0.14
15 19 0.37
16 15 0.29
17 10 0.20
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (16 bp):
TAAAAATTAAATATAT
Found at i:7581337 original size:11 final size:11
Alignment explanation
Indices: 7581321--7581356 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
7581311 TAGTTCAGTA
*
7581321 TAATAATTACT
1 TAATAATTAAT
*
7581332 TAATAATCAAT
1 TAATAATTAAT
7581343 TAATAATTAAT
1 TAATAATTAAT
7581354 TAA
1 TAA
7581357 AGATTCAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (11 bp):
TAATAATTAAT
Found at i:7581461 original size:11 final size:11
Alignment explanation
Indices: 7581430--7581472 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7581420 GATTATATGT
*
7581430 TATTATATTAA
1 TATTATAATAA
7581441 TATTATAATAA
1 TATTATAATAA
7581452 TAATTA-AATAA
1 T-ATTATAATAA
7581463 TTATTATAAT
1 -TATTATAAT
7581473 TATTTGGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TATTATAATAA
Found at i:7581535 original size:15 final size:14
Alignment explanation
Indices: 7581515--7581552 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
7581505 TGGAATTATT
7581515 ATATTAATTACAATA
1 ATATTAATTA-AATA
7581530 ATATTAATT-AATA
1 ATATTAATTAAATA
*
7581543 TTATTAATTA
1 ATATTAATTA
7581553 TTTTACATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
15 9 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTAATTAAATA
Found at i:7581797 original size:15 final size:16
Alignment explanation
Indices: 7581777--7581816 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
7581767 ATTATTGTTT
7581777 ATTAATTAAATATT-A
1 ATTAATTAAATATTAA
7581792 ATTAATT-AATATTAA
1 ATTAATTAAATATTAA
7581807 ATTGAATTAA
1 ATT-AATTAA
7581817 CAAAAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 11 0.50
16 4 0.18
17 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
ATTAATTAAATATTAA
Found at i:7582375 original size:15 final size:16
Alignment explanation
Indices: 7582340--7582384 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 16
7582330 TTTAATAAGG
7582340 TAAATATTTATAA-T-
1 TAAATATTTATAATTA
7582354 T-AATATTTA-AATTA
1 TAAATATTTATAATTA
7582368 TAAATATTTATAATTA
1 TAAATATTTATAATTA
7582384 T
1 T
7582385 TTTAATGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.07
13 9 0.33
14 2 0.07
15 8 0.30
16 6 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TAAATATTTATAATTA
Found at i:7582457 original size:14 final size:15
Alignment explanation
Indices: 7582434--7582468 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
7582424 TTTAACACAT
7582434 TAATAATATTATTA-
1 TAATAATATTATTAC
*
7582448 TAATATTATTATTAC
1 TAATAATATTATTAC
7582463 TAATAA
1 TAATAA
7582469 CATATATAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATAATATTATTAC
Found at i:7582636 original size:22 final size:22
Alignment explanation
Indices: 7582603--7582645 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7582593 CTTTTAGTTA
*
7582603 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
7582625 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
7582646 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:7582911 original size:16 final size:16
Alignment explanation
Indices: 7582892--7582926 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7582882 TAAATGTTCA
7582892 AATAATAATATTA-TTT
1 AATAATAAT-TTAGTTT
7582908 AATAATAATTTAGTTT
1 AATAATAATTTAGTTT
7582924 AAT
1 AAT
7582927 TTATCAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AATAATAATTTAGTTT
Found at i:7583396 original size:177 final size:181
Alignment explanation
Indices: 7582976--7583466 Score: 491
Period size: 177 Copynumber: 2.7 Consensus size: 181
7582966 TAATATTTGA
** *
7582976 ATTAATAAATTAGTATTATTTTATTTCAAATTAA-CTTGTATGATAAAAAATAATTGTTTTATGA
1 ATTAATAAATTAGTATTATTTTATTTCAAA-TAAGCTTGTATGAT-TGAAACAATTGTTTTATGA
* * * ** * *
7583040 CAAAACAAAAGGTCATAACGATTTAAAATCGATGATCGTTCAAATGGTCATAATTATTTGAAC-T
64 CAAAAAAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAGTCATAAATATTTGAACTT
*
7583104 GATTCGATAAACTAATTTATGTTTTAAAGCTCTAACTTATCAATTTTTATAAT
129 GATTCGATAAACTAATTTATGTTCTAAAGCTCTAACTTATCAATTTTTATAAT
* * * * *
7583157 ATTAATAAAGTAATATTATTTTATTTCAGATAAGCTTTTATGAACTGAAACAATTGTTTTATGA-
1 ATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATG-ATTGAAACAATTGTTTTATGAC
* * * * *
7583221 TAAATATAAGGTCATAACGATTTTAAATAGATAATTATTCAAATAGTCAAAAATATTTGAACTTG
65 AAAAAAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAGTCATAAATATTTGAACTTG
* * ** *
7583286 -TTTGGTAAA-TATATTT-T-TTCT-AATTTCTTACTTAAT-AATTTTT-TGAAT
130 ATTCGATAAACTA-ATTTATGTTCTAAAGCTCTAACTT-ATCAATTTTTAT-AAT
* * * * *
7583334 GTTAATAAATTAGTACTATTTTATTTCAAATAAGCATGTATGAGTTGAAGCAATTATTTTATGAC
1 ATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGA-TTGAAACAATTGTTTTATGAC
* * * * ** * *
7583399 CAAAAAAAAGGTCAAAACAATTTGAAATAGATAATTATTCTCATAGTCTTAACTATTTGAAC-TG
65 AAAAAAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAGTCATAAATATTTGAACTTG
7583463 ATTC
130 ATTC
7583467 AGTAAACACA
Statistics
Matches: 254, Mismatches: 47, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
176 2 0.01
177 73 0.29
178 58 0.23
179 3 0.01
180 65 0.26
181 52 0.20
182 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (181 bp):
ATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATTGAAACAATTGTTTTATGACA
AAAAAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAGTCATAAATATTTGAACTTGA
TTCGATAAACTAATTTATGTTCTAAAGCTCTAACTTATCAATTTTTATAAT
Found at i:7584617 original size:15 final size:15
Alignment explanation
Indices: 7584593--7584622 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7584583 CCTTTTGTAA
*
7584593 TATTATAATTATAAT
1 TATTACAATTATAAT
7584608 TATTACAATTATAAT
1 TATTACAATTATAAT
7584623 AAATTAGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTACAATTATAAT
Found at i:7584988 original size:22 final size:20
Alignment explanation
Indices: 7584935--7584992 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 20
7584925 ATAAATGAAG
*
7584935 ATTA-ATATTATTATTATAT
1 ATTATATATTATTATTATAA
* *
7584954 ATTAT-TATAATTATTGTAAA
1 ATTATATATTATTATTAT-AA
7584974 ATTGATATATTATTATTAT
1 ATT-ATATATTATTATTAT
7584993 CGATAATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
19 14 0.47
20 4 0.13
21 2 0.07
22 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
ATTATATATTATTATTATAA
Found at i:7585343 original size:25 final size:25
Alignment explanation
Indices: 7585288--7585344 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
7585278 TGTATATAAT
*
7585288 TAATTAAAATAATAAATATATTTAT
1 TAATTAAAATAATAAATATATTTAA
*
7585313 TCATTACAAATAA-AAATAT-TTGTAA
1 TAATTA-AAATAATAAATATATT-TAA
7585338 TAATTAA
1 TAATTAA
7585345 TATTATTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
24 3 0.11
25 18 0.67
26 6 0.22
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (25 bp):
TAATTAAAATAATAAATATATTTAA
Found at i:7585553 original size:24 final size:24
Alignment explanation
Indices: 7585508--7585553 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
7585498 TATATACAAT
* * *
7585508 ATATTATTTATACAATTGTTTTTA
1 ATATTATTAAAACAATTCTTTTTA
*
7585532 ATATTATTAAAACTATTCTTTT
1 ATATTATTAAAACAATTCTTTT
7585554 ATTATAAGTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.57
Consensus pattern (24 bp):
ATATTATTAAAACAATTCTTTTTA
Found at i:7585607 original size:21 final size:20
Alignment explanation
Indices: 7585574--7585617 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
7585564 AATAGAAAAG
7585574 ATAATAATAAACAATAAATT
1 ATAATAATAAACAATAAATT
*
7585594 ATAATAATTAAACAATATATT
1 ATAATAA-TAAACAATAAATT
7585615 ATA
1 ATA
7585618 TATTGTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAATAATAAACAATAAATT
Found at i:7585906 original size:19 final size:19
Alignment explanation
Indices: 7585882--7585918 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7585872 CCAAGTATCG
*
7585882 TAATAAAATTATAATATTA
1 TAATAAAAATATAATATTA
*
7585901 TAATAAAAATATTATATT
1 TAATAAAAATATAATATT
7585919 GTTTAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATAAAAATATAATATTA
Found at i:7586429 original size:15 final size:15
Alignment explanation
Indices: 7586399--7586447 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
7586389 TTATATAATC
* *
7586399 TATTTAATGATTAAA
1 TATTTAATAATAAAA
*
7586414 TATTTTATAATAAAA
1 TATTTAATAATAAAA
* *
7586429 TATTTAATATTAAAT
1 TATTTAATAATAAAA
7586444 TATT
1 TATT
7586448 ACAATTGTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TATTTAATAATAAAA
Found at i:7586559 original size:25 final size:25
Alignment explanation
Indices: 7586526--7586595 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 25
7586516 TTATAAAATT
**
7586526 TATTCAAATATT-TTATATAATTATAG
1 TATT-AAATATTATTA-ATAAAAATAG
7586552 TATTAAATATTATTAATAAAAATAG
1 TATTAAATATTATTAATAAAAATAG
7586577 TATTAATATATTACTTAAT
1 TATTAA-ATATTA-TTAAT
7586596 TAATATAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 21 0.54
26 13 0.33
27 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (25 bp):
TATTAAATATTATTAATAAAAATAG
Found at i:7586836 original size:22 final size:22
Alignment explanation
Indices: 7586787--7586836 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7586777 TATAGTCAAT
* * *
7586787 TAATAATTGATTAATTTTATTA
1 TAATATTTGATTAAATTAATTA
7586809 TAATATTTG-TTAAATTAATTA
1 TAATATTTGATTAAATTAATTA
7586830 CTAATAT
1 -TAATAT
7586837 AATTAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (22 bp):
TAATATTTGATTAAATTAATTA
Found at i:7586980 original size:10 final size:10
Alignment explanation
Indices: 7586947--7586999 Score: 63
Period size: 10 Copynumber: 5.3 Consensus size: 10
7586937 TTTATCTAAA
7586947 TATATTATAAT
1 TATA-TATAAT
* **
7586958 TATTTATTTT
1 TATATATAAT
7586968 TATATATAAT
1 TATATATAAT
7586978 TATATATAAT
1 TATATATAAT
7586988 TATAT-TAAT
1 TATATATAAT
7586997 TAT
1 TAT
7587000 TTAATTAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
9 7 0.19
10 26 0.72
11 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATATATAAT
Found at i:7587018 original size:13 final size:13
Alignment explanation
Indices: 7586986--7587025 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
7586976 ATTATATATA
*
7586986 ATTATATTAATTAT
1 ATTA-ATTAATAAT
7587000 -TTAATTAATAAT
1 ATTAATTAATAAT
7587012 ATTAATTAATAAT
1 ATTAATTAATAAT
7587025 A
1 A
7587026 ATATATGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 8 0.33
13 16 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAATTAATAAT
Found at i:7587356 original size:15 final size:16
Alignment explanation
Indices: 7587325--7587372 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
7587315 TGTATTCAAA
7587325 TAATATATTAATAATT
1 TAATATATTAATAATT
*
7587341 TAATAT-TTAATTATT
1 TAATATATTAATAATT
7587356 T-ATCATAATTAATAATT
1 TAAT-AT-ATTAATAATT
7587373 ATTTATATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 2 0.07
15 11 0.41
16 6 0.22
17 8 0.30
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATATTAATAATT
Found at i:7587757 original size:25 final size:23
Alignment explanation
Indices: 7587725--7587777 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
7587715 ATAGCATAAC
*
7587725 AATAATAAGA-AATTTTAATATTA
1 AATAATAAAATAATTTT-ATATTA
7587748 TAATATATAAAATAATTTTATATTA
1 -AATA-ATAAAATAATTTTATATTA
7587773 AATAA
1 AATAA
7587778 AATTATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 1 0.04
24 8 0.31
25 11 0.42
26 6 0.23
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
AATAATAAAATAATTTTATATTA
Found at i:7587768 original size:20 final size:20
Alignment explanation
Indices: 7587740--7587789 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
7587730 TAAGAAATTT
* *
7587740 TAATATTATAATATATAAAA
1 TAATTTTATAATAAATAAAA
*
7587760 TAATTTTATATTAAATAAAA
1 TAATTTTATAATAAATAAAA
*
7587780 TTATTTTATA
1 TAATTTTATA
7587790 TATTTTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATTTTATAATAAATAAAA
Found at i:7587819 original size:14 final size:14
Alignment explanation
Indices: 7587768--7587845 Score: 53
Period size: 14 Copynumber: 5.9 Consensus size: 14
7587758 AATAATTTTA
*
7587768 TATTA-AATAAAAT
1 TATTATAATATAAT
*
7587781 TATT-TTATAT-AT
1 TATTATAATATAAT
7587793 T-TT-TAAT-TAAT
1 TATTATAATATAAT
7587804 TATTATAA-ATATAT
1 TATTATAATATA-AT
*
7587818 TATAATAATATAAT
1 TATTATAATATAAT
*
7587832 TATTTTATATATAA
1 TATTATA-ATATAA
7587846 ATAATTTATA
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
10 1 0.02
11 8 0.16
12 5 0.10
13 12 0.24
14 16 0.31
15 9 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTATAATATAAT
Found at i:7587826 original size:23 final size:22
Alignment explanation
Indices: 7587774--7587826 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
7587764 TTTATATTAA
* *
7587774 ATAA-AATTATTTTATATATTT
1 ATAATAATTATTATAAATATTT
*
7587795 TTAATTAATTATTATAAATATATT
1 ATAA-TAATTATTATAAATAT-TT
7587819 ATAATAAT
1 ATAATAAT
7587827 ATAATTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 3 0.12
23 17 0.68
24 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATAATTATTATAAATATTT
Found at i:7587829 original size:19 final size:19
Alignment explanation
Indices: 7587807--7587862 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
7587797 AATTAATTAT
7587807 TATAAATATATTATAATAA
1 TATAAATATATTATAATAA
* *
7587826 TATAATTATTTTATATATAA
1 TATAAATATATTATA-ATAA
*
7587846 -AT-AATTTA-TATAATAA
1 TATAAATATATTATAATAA
7587862 T
1 T
7587863 TTATATTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 3 0.10
19 15 0.50
20 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATAAATATATTATAATAA
Found at i:7587845 original size:15 final size:15
Alignment explanation
Indices: 7587825--7587863 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7587815 TATTATAATA
*
7587825 ATATAATTATTTTAT
1 ATATAATTAATTTAT
*
7587840 ATATAAATAATTTAT
1 ATATAATTAATTTAT
7587855 ATAATAATT
1 AT-ATAATT
7587864 TATATTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTAATTTAT
Found at i:7587862 original size:12 final size:13
Alignment explanation
Indices: 7587839--7587868 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7587829 AATTATTTTA
7587839 TATATAAATAATT
1 TATATAAATAATT
7587852 TATAT-AATAATT
1 TATATAAATAATT
7587864 TATAT
1 TATAT
7587869 TGTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:7587868 original size:51 final size:47
Alignment explanation
Indices: 7587747--7587869 Score: 113
Period size: 51 Copynumber: 2.5 Consensus size: 47
7587737 TTTTAATATT
* * **
7587747 ATAATATATAAAATAATTTTATATTAAATAAAATTATTTTATATATTT
1 ATAATTTATATAATAA-TTTATATTAAATAAAATTATTTTATATATAA
* * * *
7587795 TTAATTAATTATTATAA-ATATATTATAATAATATAATTATTTTATATATAA
1 ATAATTTA-TATAATAATTTATATTA-AAT-A-A-AATTATTTTATATATAA
7587846 ATAATTTATATAATAATTTATATT
1 ATAATTTATATAATAATTTATATT
7587870 GTTATTTAAG
Statistics
Matches: 57, Mismatches: 12, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
47 7 0.12
48 8 0.14
49 7 0.12
50 8 0.14
51 27 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (47 bp):
ATAATTTATATAATAATTTATATTAAATAAAATTATTTTATATATAA
Found at i:7588061 original size:17 final size:16
Alignment explanation
Indices: 7588039--7588094 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
7588029 TTTATTTGAT
7588039 AATTTATATATATTATA
1 AATTTATATATA-TATA
*
7588056 AATTTATATTTATAT-
1 AATTTATATATATATA
*
7588071 AA-TTATAAATAATATA
1 AATTTATATAT-ATATA
7588087 TAATTTAT
1 -AATTTAT
7588095 TAATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 3 0.09
17 13 0.41
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTATATATATATA
Found at i:7588066 original size:31 final size:32
Alignment explanation
Indices: 7588025--7588094 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
7588015 ATAGTAATTA
* * * *
7588025 ATAATTTAT-TTGATA-ATTTATATATATTAT
1 ATAATTTATATTTATATAATTATAAATAATAT
7588055 A-AATTTATATTTATATAATTATAAATAATAT
1 ATAATTTATATTTATATAATTATAAATAATAT
7588086 ATAATTTAT
1 ATAATTTAT
7588095 TAATTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.21
30 6 0.18
31 13 0.39
32 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (32 bp):
ATAATTTATATTTATATAATTATAAATAATAT
Found at i:7588086 original size:23 final size:23
Alignment explanation
Indices: 7588040--7588087 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
7588030 TTATTTGATA
*
7588040 ATTTATATATATTATAAATTTAT
1 ATTTATATATATTATAAATATAT
7588063 ATTTATATA-ATTATAAATAATAT
1 ATTTATATATATTATAAAT-ATAT
7588086 AT
1 AT
7588088 AATTTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATATATATTATAAATATAT
Found at i:7588088 original size:25 final size:23
Alignment explanation
Indices: 7588032--7588099 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 23
7588022 TTAATAATTT
7588032 ATTTGATAATTTATATATATTATAA
1 ATTT-ATAATTTATATA-ATTATAA
7588057 ATTTAT-ATTTATATAATTATAA
1 ATTTATAATTTATATAATTATAA
7588079 ATAATATATAATTTAT-TAATT
1 AT--T-TATAATTTATATAATT
7588100 TTTATTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.23
23 9 0.23
24 3 0.08
25 12 0.31
26 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTTATAATTTATATAATTATAA
Found at i:7589245 original size:21 final size:21
Alignment explanation
Indices: 7589199--7589246 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
7589189 TTATATTACA
*
7589199 AATTTAATAAATTAATTAAAT
1 AATTAAATAAATTAATTAAAT
* * *
7589220 TATTAAATATATTAATTAACT
1 AATTAAATAAATTAATTAAAT
7589241 AATTAA
1 AATTAA
7589247 CTTATATGTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AATTAAATAAATTAATTAAAT
Found at i:7589490 original size:20 final size:19
Alignment explanation
Indices: 7589452--7589489 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7589442 AATGATTTGA
*
7589452 AACTTAATTATTTATATAT
1 AACTTAATGATTTATATAT
7589471 AACTTAATGATTT-TATAT
1 AACTTAATGATTTATATAT
7589489 A
1 A
7589490 TTACTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (19 bp):
AACTTAATGATTTATATAT
Found at i:7590040 original size:12 final size:12
Alignment explanation
Indices: 7590006--7590040 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
7589996 GTTATTCATA
7590006 TAATATAATTTAT
1 TAATATAA-TTAT
7590019 TAA-ATAATTAT
1 TAATATAATTAT
7590030 TAATATAATTA
1 TAATATAATTA
7590041 ATAACATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 11 0.52
13 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATATAATTAT
Found at i:7590182 original size:17 final size:17
Alignment explanation
Indices: 7590160--7590220 Score: 70
Period size: 17 Copynumber: 3.4 Consensus size: 17
7590150 ACAATTATAG
7590160 TATTATTAATAATTAAT
1 TATTATTAATAATTAAT
*
7590177 TATTATTAATTAATAATATT
1 TATTATTAA-TAAT--TAAT
7590197 TATTATT-ATAATTAAT
1 TATTATTAATAATTAAT
7590213 TAATTATT
1 T-ATTATT
7590221 TTATAATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 4 0.11
17 15 0.39
18 8 0.21
19 1 0.03
20 10 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTATTAATAATTAAT
Found at i:7590210 original size:26 final size:25
Alignment explanation
Indices: 7590173--7590237 Score: 85
Period size: 26 Copynumber: 2.6 Consensus size: 25
7590163 TATTAATAAT
*
7590173 TAATTATTATTAATTAATAATATTTA
1 TAATTATAATTAATTAATAAT-TTTA
* *
7590199 TTATTATAATTAATTAATTATTTTA
1 TAATTATAATTAATTAATAATTTTA
*
7590224 TAATTATAAATAAT
1 TAATTATAATTAAT
7590238 AATTGTATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 16 0.47
26 18 0.53
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TAATTATAATTAATTAATAATTTTA
Found at i:7591144 original size:25 final size:24
Alignment explanation
Indices: 7591094--7591141 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
7591084 ATAAGAGTTA
7591094 AATTTAAAGCTTAAATATTAATAAT
1 AATTTAAA-CTTAAATATTAATAAT
7591119 AATTTAAA-TTATAATATTAATAA
1 AATTTAAACTTA-AATATTAATAA
7591142 ATAGTCATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.14
24 11 0.50
25 8 0.36
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (24 bp):
AATTTAAACTTAAATATTAATAAT
Found at i:7591368 original size:10 final size:10
Alignment explanation
Indices: 7591355--7591380 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7591345 TATGAACTAA
7591355 AATAATTATT
1 AATAATTATT
7591365 AATAATTATT
1 AATAATTATT
7591375 AATAAT
1 AATAAT
7591381 AGAATATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATAATTATT
Found at i:7602318 original size:20 final size:20
Alignment explanation
Indices: 7602269--7602334 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 20
7602259 TTATTTTTAA
7602269 TATAAATATAAAATTAAATATAT
1 TATAAATAT-AAA-TAAATA-AT
*
7602292 GTATAAATATATATAAATAAT
1 -TATAAATATAAATAAATAAT
7602313 TATAAA-ATTAAATAAATAAT
1 TATAAATA-TAAATAAATAAT
7602333 TA
1 TA
7602335 AAAAATTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 1 0.03
20 19 0.49
21 2 0.05
22 6 0.15
23 2 0.05
24 9 0.23
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
TATAAATATAAATAAATAAT
Found at i:7602339 original size:20 final size:20
Alignment explanation
Indices: 7602304--7602342 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7602294 ATAAATATAT
*
7602304 ATAAATAATTATAAAATTAA
1 ATAAATAATTAAAAAATTAA
7602324 ATAAATAATTAAAAAATTA
1 ATAAATAATTAAAAAATTA
7602343 TTTTTATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAATAATTAAAAAATTAA
Found at i:7607323 original size:355 final size:356
Alignment explanation
Indices: 7606881--7607598 Score: 1068
Period size: 355 Copynumber: 2.0 Consensus size: 356
7606871 TATAACAAAT
* *
7606881 TATTGAAGGCATTTTATAATAAAATATGCTTTTAATAATCTCAAAATTTTTTTTAAAGAAATTAT
1 TATTGAAGGCATTTTATAATAAAAGATGCCTTTAATAATCTCAAAATTTTTTTTAAAGAAATTAT
* *
7606946 TGAAGGCATTGTTATCTGCAAACGCCTTCACTAATTATCTACAAAATCTAATATG-AATTATTAA
66 TGAAGGCATTGCTATCTGCAAACGCCTTCACTAATTATCTACAAAATCTAATA-GCAAATATTAA
* * *
7607010 AGACGTTTTTCTTGAATATACGCCTTCAATAACTATCACAAAATTTGTGTGACTGTATATTGAAG
130 AGACATTTTTCTTGAATATACACCTTCAATAACTATCACAAAATTTGTGTGACGGTATATTGAAG
* *** *
7607075 GCATTTTACAGTAAAAGATGCCTTTAATAATTTTTCAAAATTTTTTGAGGAAAAATATTGAAGGC
195 GCATTTTACAGTAAAAGACGCCTTTAATAATGCCT-AAAATTTTTAGAGGAAAAATATTGAAGGC
* *
7607140 GTCTGTTATTAGA-AAATGCCTT-CAGTAATGGATTACTAAGTTTAAAGATATATTGAAGGTGCT
259 GTCTGTTATTA-ACAAACGCCTTCCA-TAATGGATTACTAAGTTTAAAGATATATTGAAGGTGCA
7607203 TTTTCGAATAAACGCCTTCTATAACCATCGTGGTA
322 TTTTCGAATAAACGCCTTCTATAACCATCGTGGTA
* *
7607238 TATTGAAGGCATTTTATAATAAAAGATGCCTTTAATAATCT-TAAA-TTTTTTTAATGAAATTAT
1 TATTGAAGGCATTTTATAATAAAAGATGCCTTTAATAATCTCAAAATTTTTTTTAAAGAAATTAT
* * *
7607301 TGAAGGCATTGCTATTTGCAAACGCTTTCACTGATTATCTACAAAATCTAATAGCAAATATTAAA
66 TGAAGGCATTGCTATCTGCAAACGCCTTCACTAATTATCTACAAAATCTAATAGCAAATATTAAA
* * * ***
7607366 GGCATTTTTCTTGAATATACACCTTCAATAATTGTGTTAAAATTTGTGTGACGGTATATTGAAGG
131 GACATTTTTCTTGAATATACACCTTCAATAACTATCACAAAATTTGTGTGACGGTATATTGAAGG
* * *
7607431 CATTTTATAGTAGAAGACGCCTTTAATAATGCCTAAAATTTTTAGAGGGAAAATATTGAAGGCGT
196 CATTTTACAGTAAAAGACGCCTTTAATAATGCCTAAAATTTTTAGAGGAAAAATATTGAAGGCGT
* *
7607496 CTGTTATTAACAAACGCCTTCCATAATGGATTACTAAGTTTAAGGGTATATTGAAGGTGCATTTT
261 CTGTTATTAACAAACGCCTTCCATAATGGATTACTAAGTTTAAAGATATATTGAAGGTGCATTTT
** *
7607561 CGAATAAACGCCTTCTATGGCCATTGTGGTA
326 CGAATAAACGCCTTCTATAACCATCGTGGTA
7607592 TATTGAA
1 TATTGAA
7607599 AGTGTTTTAC
Statistics
Matches: 325, Mismatches: 33, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
353 1 0.00
354 121 0.37
355 161 0.50
356 3 0.01
357 39 0.12
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (356 bp):
TATTGAAGGCATTTTATAATAAAAGATGCCTTTAATAATCTCAAAATTTTTTTTAAAGAAATTAT
TGAAGGCATTGCTATCTGCAAACGCCTTCACTAATTATCTACAAAATCTAATAGCAAATATTAAA
GACATTTTTCTTGAATATACACCTTCAATAACTATCACAAAATTTGTGTGACGGTATATTGAAGG
CATTTTACAGTAAAAGACGCCTTTAATAATGCCTAAAATTTTTAGAGGAAAAATATTGAAGGCGT
CTGTTATTAACAAACGCCTTCCATAATGGATTACTAAGTTTAAAGATATATTGAAGGTGCATTTT
CGAATAAACGCCTTCTATAACCATCGTGGTA
Found at i:7616393 original size:2 final size:2
Alignment explanation
Indices: 7616386--7616414 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7616376 AAATGAACTG
7616386 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7616415 GATTGCTCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7624075 original size:16 final size:16
Alignment explanation
Indices: 7624044--7624077 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7624034 ATACAAACTA
* *
7624044 GAAAAAAAAGTTAAAG
1 GAAAAAAAAATCAAAG
7624060 GAAAAAAAAATCAAAG
1 GAAAAAAAAATCAAAG
7624076 GA
1 GA
7624078 TATTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.09
Consensus pattern (16 bp):
GAAAAAAAAATCAAAG
Found at i:7629155 original size:11 final size:11
Alignment explanation
Indices: 7629139--7629168 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
7629129 ATCCTATAAA
7629139 AGATTTGTTTG
1 AGATTTGTTTG
7629150 AGATTTGTTTG
1 AGATTTGTTTG
7629161 AGATTTGT
1 AGATTTGT
7629169 CAGATATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:7629281 original size:52 final size:52
Alignment explanation
Indices: 7629193--7629349 Score: 190
Period size: 52 Copynumber: 3.0 Consensus size: 52
7629183 TGGACAAGAA
* * * *
7629193 GACTTGCAAAAGAAGAATT-TCAAGAGAAAAATGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCT-AAGAGGAAAAGGATTCTTAATAGGCAAGTTT
* *
7629245 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGCAAGTTT
* * * * * *
7629297 GACTTACAGGAAAAGAATTCTAAGAGGAGATGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGCAAGTTT
7629349 G
1 G
7629350 TATGGTTACA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 90 0.99
53 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGCAAGTTT
Found at i:7630233 original size:11 final size:11
Alignment explanation
Indices: 7630217--7630244 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7630207 ATCCTATAAA
7630217 AGATTTGTTTG
1 AGATTTGTTTG
7630228 AGATTTGTTTG
1 AGATTTGTTTG
7630239 AGATTT
1 AGATTT
7630245 ATCAGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:7630358 original size:52 final size:52
Alignment explanation
Indices: 7630271--7630427 Score: 181
Period size: 52 Copynumber: 3.0 Consensus size: 52
7630261 TGGACAAGAA
* * * *
7630271 GACTTGCAAAAGAAGAATT-TCAAGAGAAAAAAGATTTTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCT-AAGAGGAAAAAGATTCTTAATAGGCAAGTTT
* *
7630323 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAAAGATTCTTAATAGGCAAGTTT
* * * * ** *
7630375 GACTTACAGGAAAAGAATTCTAAGAGGAGATGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAAAGATTCTTAATAGGCAAGTTT
7630427 G
1 G
7630428 TATGGTTACA
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
52 89 0.99
53 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAAAGATTCTTAATAGGCAAGTTT
Found at i:7631314 original size:11 final size:11
Alignment explanation
Indices: 7631298--7631325 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7631288 AATCCTATAA
7631298 AGATTTGTTTG
1 AGATTTGTTTG
7631309 AGATTTGTTTG
1 AGATTTGTTTG
7631320 AGATTT
1 AGATTT
7631326 ATCAGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:7631438 original size:51 final size:51
Alignment explanation
Indices: 7631352--7631506 Score: 204
Period size: 51 Copynumber: 3.0 Consensus size: 51
7631342 TGGACAAGAA
* * * *
7631352 GACTTGCAAAAGAAGAATT-TCAAGAGAAAAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCT-AAGAGGAAAGGATTCTTAATAGGCAAGTTT
*
7631403 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGATTCTTAATAGGCAAGTTT
* * * *
7631454 GACTTACAGGAAAAGAATTCTAAGAGGAAATGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAA-GGATTCTTAATAGGCAAGTTT
7631506 G
1 G
7631507 TATGGTTATA
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
51 70 0.76
52 22 0.24
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.26
Consensus pattern (51 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGATTCTTAATAGGCAAGTTT
Found at i:7632390 original size:11 final size:11
Alignment explanation
Indices: 7632374--7632401 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7632364 ATCCTATAAA
7632374 AGATTTGTTTG
1 AGATTTGTTTG
7632385 AGATTTGTTTG
1 AGATTTGTTTG
7632396 AGATTT
1 AGATTT
7632402 ATCAGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:7632516 original size:52 final size:52
Alignment explanation
Indices: 7632428--7632584 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
7632418 TGGACAAGAA
* * * *
7632428 GACTTGCAAAAGAAGAATT-T-CAAGAGAAAAATGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAG-GAAATA-GATTCTTAATAGGCAAGTTT
7632480 GACTTGCAAGAGAAGAATTCTAAAAGGAAATAGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAATAGATTCTTAATAGGCAAGTTT
* * * * * *
7632532 GACTTACAGGAAAAGAATTCTAAGAGGAAATGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAATAGATTCTTAATAGGCAAGTTT
7632584 G
1 G
7632585 TATGGTTACA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 84 0.90
53 6 0.06
54 3 0.03
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGGAAATAGATTCTTAATAGGCAAGTTT
Found at i:7633478 original size:11 final size:11
Alignment explanation
Indices: 7633462--7633489 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7633452 ATCCTATAAA
7633462 AGATTTGTTTG
1 AGATTTGTTTG
7633473 AGATTTGTTTG
1 AGATTTGTTTG
7633484 AGATTT
1 AGATTT
7633490 CAGATATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:7633600 original size:51 final size:51
Alignment explanation
Indices: 7633514--7633667 Score: 195
Period size: 51 Copynumber: 3.0 Consensus size: 51
7633504 TGGACAAGAA
* * * *
7633514 GACTTGCAAAAGAAGAATTC-AAGAGAAAAAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAG-GAAAGGATTCTTAATAGGCAAGTTT
*
7633565 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGATTCTTAATAGGCAAGTTT
* * * *
7633616 GACTTACAGGA-AAGAATTCTAAGAGGAGATGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGA-AAGGATTCTTAATAGGCAAGTTT
7633667 G
1 G
7633668 TATGGTTATA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
50 15 0.16
51 72 0.79
52 4 0.04
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (51 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGATTCTTAATAGGCAAGTTT
Found at i:7634557 original size:11 final size:11
Alignment explanation
Indices: 7634541--7634570 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
7634531 ATCCTATAAA
7634541 AGATTTGTTTG
1 AGATTTGTTTG
7634552 AGATTTGTTTG
1 AGATTTGTTTG
7634563 AGATTTGT
1 AGATTTGT
7634571 CAGATATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:7634682 original size:52 final size:52
Alignment explanation
Indices: 7634595--7634751 Score: 199
Period size: 52 Copynumber: 3.0 Consensus size: 52
7634585 TGGACAAGAA
* * **
7634595 GACTTGCAAAAGAAGAATT-TCAAAAGAAAAAGGATTCTTAATAGATAAGTTT
1 GACTTGCAAGAGAAGAATTCT-AAAAGGAAAAGGATTCTTAATAGGCAAGTTT
*
7634647 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
* * * * * *
7634699 GACTTACAGGAAAAGAATTCTAAGAGGAGATGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
7634751 G
1 G
7634752 TATGGTTATA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
52 92 0.99
53 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGCAAGTTT
Found at i:7638623 original size:46 final size:46
Alignment explanation
Indices: 7638571--7638666 Score: 165
Period size: 46 Copynumber: 2.1 Consensus size: 46
7638561 TATTTTAATA
*
7638571 CATAAACTATCTTTAATAAAATTAAAAATTAATGTCTTAGTTCATG
1 CATAAACTATCTTCAATAAAATTAAAAATTAATGTCTTAGTTCATG
* *
7638617 CATAAACTATCTTCAATAAAATTAAAAATTAATGTCTTGGTTTATG
1 CATAAACTATCTTCAATAAAATTAAAAATTAATGTCTTAGTTCATG
7638663 CATA
1 CATA
7638667 TATTATATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (46 bp):
CATAAACTATCTTCAATAAAATTAAAAATTAATGTCTTAGTTCATG
Found at i:7641673 original size:13 final size:14
Alignment explanation
Indices: 7641612--7641689 Score: 51
Period size: 13 Copynumber: 5.9 Consensus size: 14
7641602 AATAAATATT
7641612 AAATCATATCATGC
1 AAATCATATCATGC
7641626 TAAA--ATGATCATGC
1 -AAATCAT-ATCATGC
* *
7641640 AAAT-ATATTAT-A
1 AAATCATATCATGC
*
7641652 AAATTATATCATGC
1 AAATCATATCATGC
**
7641666 -AATCATATCATAA
1 AAATCATATCATGC
7641679 AAATCAT-TCAT
1 AAATCATATCAT
7641690 ACAATTATAC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
12 4 0.08
13 29 0.57
14 15 0.29
15 3 0.06
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.33
Consensus pattern (14 bp):
AAATCATATCATGC
Found at i:7641689 original size:26 final size:26
Alignment explanation
Indices: 7641633--7641703 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
7641623 TGCTAAAATG
* *
7641633 ATCATGCAAATATATTAT-AAAATTAT
1 ATCATGC-AATATATCATAAAAATCAT
7641659 ATCATGCAATCATATCATAAAAATCAT
1 ATCATGCAAT-ATATCATAAAAATCAT
*
7641686 -TCATACAAT-TATACATAA
1 ATCATGCAATATAT-CATAA
7641704 TTATACAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 3 0.08
25 8 0.21
26 21 0.54
27 7 0.18
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (26 bp):
ATCATGCAATATATCATAAAAATCAT
Found at i:7641709 original size:18 final size:17
Alignment explanation
Indices: 7641688--7641721 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7641678 AAAATCATTC
*
7641688 ATACAATTATACATAATT
1 ATACAATAATA-ATAATT
7641706 ATACAATAATAATAAT
1 ATACAATAATAATAAT
7641722 CATATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (17 bp):
ATACAATAATAATAATT
Found at i:7642080 original size:41 final size:41
Alignment explanation
Indices: 7642027--7642288 Score: 255
Period size: 41 Copynumber: 6.3 Consensus size: 41
7642017 AATAAAATAG
* ** *
7642027 ACATGTAATTAAATATATAATCACACAATTAACAATGTAAA
1 ACATGCAATTAAATATATAATCATGCAATTAACAATATAAA
* * *
7642068 ACATGCAATTAAATATCTAATTATGCAATTAACAATGTAAA
1 ACATGCAATTAAATATATAATCATGCAATTAACAATATAAA
* **
7642109 ATATGCAAACAAATATATAATCATGCAATT-A-AATATATAA
1 ACATGCAATTAAATATATAATCATGCAATTAACAATATA-AA
*
7642149 TCATGCAATT-AATAATATAAATCATGCAATT-A-AATATATAA
1 ACATGCAATTAAAT-ATAT-AATCATGCAATTAACAATATA-AA
**
7642190 TTATGCAATTAACAATATATAATCATGCAATTAACAATATAAA
1 ACATGCAATT-A-AATATATAATCATGCAATTAACAATATAAA
* * * *
7642233 TCATGTAATTAAATATATAATCATGCAAATAATAATATATAA
1 ACATGCAATTAAATATATAATCATGCAATTAACAATATA-AA
*
7642275 ATCATGCAAATAAA
1 A-CATGCAATTAAA
7642289 CAAGCAATTA
Statistics
Matches: 188, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
39 8 0.04
40 13 0.07
41 118 0.63
42 15 0.08
43 25 0.13
44 9 0.05
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (41 bp):
ACATGCAATTAAATATATAATCATGCAATTAACAATATAAA
Found at i:7642095 original size:20 final size:20
Alignment explanation
Indices: 7642028--7642390 Score: 255
Period size: 20 Copynumber: 18.4 Consensus size: 20
7642018 ATAAAATAGA
*
7642028 CATGTAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
** * *
7642048 CACACAATTAACA-ATGTAAAA
1 CATGCAATTAA-ATATAT-AAT
*
7642069 CATGCAATTAAATATCTAAT
1 CATGCAATTAAATATATAAT
* * *
7642089 TATGCAATTAACAATGTAAAAT
1 CATGCAATT-A-AATATATAAT
**
7642111 -ATGCAAACAAATATATAAT
1 CATGCAATTAAATATATAAT
7642130 CATGCAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
7642150 CATGCAATT-AATAATATAAAT
1 CATGCAATTAAAT-ATAT-AAT
7642171 CATGCAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
*
7642191 TATGCAATTAACAATATATAAT
1 CATGCAATT-A-AATATATAAT
7642213 CATGCAATTAACA-ATATAAAT
1 CATGCAATTAA-ATATAT-AAT
*
7642234 CATGTAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
*
7642254 CATGCAAATAATAATATATAAAT
1 CATGC-AATTA-AATATAT-AAT
7642277 CATGC-----AA-ATA-AA-
1 CATGCAATTAAATATATAAT
*
7642289 CAAGCAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
7642309 CATG-----AAA-ATA-AA-
1 CATGCAATTAAATATATAAT
7642321 CATGCAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
* *
7642341 CATGTAAATAATAATATATAAAT
1 CATG-CAATTA-AATATAT-AAT
* *
7642364 CATGCAAATATAATAT-TAGT
1 CATGCAATTA-AATATATAAT
7642384 CATGCAA
1 CATGCAA
7642391 ATTCATGCAA
Statistics
Matches: 275, Mismatches: 32, Indels: 72
0.73 0.08 0.19
Matches are distributed among these distances:
12 8 0.03
13 4 0.01
14 3 0.01
15 6 0.02
16 2 0.01
17 5 0.02
18 6 0.02
19 15 0.05
20 93 0.34
21 67 0.24
22 51 0.19
23 15 0.05
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.31
Consensus pattern (20 bp):
CATGCAATTAAATATATAAT
Found at i:7642143 original size:102 final size:103
Alignment explanation
Indices: 7642028--7642288 Score: 330
Period size: 102 Copynumber: 2.5 Consensus size: 103
7642018 ATAAAATAGA
* *
7642028 CATGTAATTAAATATATAATCACACAATTAACAATGTAAAACATGCAATTAAATATCTAATTATG
1 CATGTAATTAAATATATAATCACACAATTAACAATATAAAACATGCAATTAAATATATAATTATG
*
7642093 CAATTAACAATGTAAAAT-ATGC-A-AACAAATATATAAT
66 CAATTAACAATATAAAATCATGCAATAAC-AATATA-AAT
* ** * *
7642130 CATGCAATTAAATATATAATCATGCAATTAATAATATAAATCATGCAATTAAATATATAATTATG
1 CATGTAATTAAATATATAATCACACAATTAACAATATAAAACATGCAATTAAATATATAATTATG
*
7642195 CAATTAACAATATATAATCATGCAATTAACAATATAAAT
66 CAATTAACAATATAAAATCATGCAA-TAACAATATAAAT
** * * *
7642234 CATGTAATTAAATATATAATCATGCAAATAATAATATATAAATCATGCAAATAAA
1 CATGTAATTAAATATATAATCACACAATTAACAATATA-AAA-CATGCAATTAAA
7642289 CAAGCAATTA
Statistics
Matches: 140, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
102 74 0.53
103 4 0.03
104 40 0.29
105 8 0.06
106 14 0.10
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (103 bp):
CATGTAATTAAATATATAATCACACAATTAACAATATAAAACATGCAATTAAATATATAATTATG
CAATTAACAATATAAAATCATGCAATAACAATATAAAT
Found at i:7642220 original size:63 final size:61
Alignment explanation
Indices: 7642069--7642390 Score: 296
Period size: 63 Copynumber: 5.1 Consensus size: 61
7642059 CAATGTAAAA
* * * **
7642069 CATGCAATTAAATATCTAATTATGCAATTAACAATGTAAAAT-ATGCAAACAAATATATAAT
1 CATGCAATTAAATATATAATCATGCAATTAACAATAT-AAATCATGCAATTAAATATATAAT
*
7642130 CATGCAATTAAATATATAATCATGCAATTAATAATATAAATCATGCAATTAAATATATAAT
1 CATGCAATTAAATATATAATCATGCAATTAACAATATAAATCATGCAATTAAATATATAAT
* *
7642191 TATGCAATTAACAATATATAATCATGCAATTAACAATATAAATCATGTAATTAAATATATAAT
1 CATGCAATT-A-AATATATAATCATGCAATTAACAATATAAATCATGCAATTAAATATATAAT
* * * **
7642254 CATGCAAATAATAATATATAAATCATGCAAATAAACAAGCAATTAAAT-ATATAATCATGAAA-A
1 CATGC-AATTA-AATATAT-AATCATGC-AATTAACAA--TA-TAAATCATGCAAT--T-AAATA
7642317 TA-AA-
56 TATAAT
* * * * *
7642321 CATGCAATTAAATATATAATCATGTAAATAATAATATATAAATCATGCAAATATAATAT-TAGT
1 CATGCAATTAAATATATAATCATGCAATTAA-CA-ATATAAATCATGCAATTA-AATATATAAT
7642384 CATGCAA
1 CATGCAA
7642391 ATTCATGCAA
Statistics
Matches: 217, Mismatches: 25, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
60 5 0.02
61 61 0.28
62 9 0.04
63 77 0.35
64 19 0.09
65 16 0.07
66 4 0.02
67 12 0.06
68 7 0.03
69 4 0.02
70 3 0.01
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (61 bp):
CATGCAATTAAATATATAATCATGCAATTAACAATATAAATCATGCAATTAAATATATAAT
Found at i:7642310 original size:32 final size:32
Alignment explanation
Indices: 7642266--7642351 Score: 136
Period size: 32 Copynumber: 2.7 Consensus size: 32
7642256 TGCAAATAAT
*
7642266 AATATATAAATCATGCAAATAAACAAGCAATTA
1 AATATAT-AATCATGAAAATAAACAAGCAATTA
*
7642299 AATATATAATCATGAAAATAAACATGCAATTA
1 AATATATAATCATGAAAATAAACAAGCAATTA
*
7642331 AATATATAATCATGTAAATAA
1 AATATATAATCATGAAAATAA
7642352 TAATATATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
32 43 0.86
33 7 0.14
ACGTcount: A:0.57, C:0.09, G:0.06, T:0.28
Consensus pattern (32 bp):
AATATATAATCATGAAAATAAACAAGCAATTA
Found at i:7643370 original size:43 final size:41
Alignment explanation
Indices: 7643310--7643485 Score: 199
Period size: 42 Copynumber: 4.1 Consensus size: 41
7643300 TTTTTTTAGA
*
7643310 AAAATGCTCCCTTACAACTGAAGCTTTGAAACTTTTAAAAAAT
1 AAAATGCTCCCCTACAACT-AAGCTTTGAAACTTTT-AAAAAT
* * *
7643353 AAAATGCTCCCCCACAACTAAGACTTTGGAACTTTTGAAAAT
1 AAAATGCTCCCCTACAACTAAG-CTTTGAAACTTTTAAAAAT
* * * *
7643395 AAAATACTCTCCTACAACTAAGGCTTTGGAACTTTTAAAAAG
1 AAAATGCTCCCCTACAACTAA-GCTTTGAAACTTTTAAAAAT
* * *
7643437 AAAATCCTCCCCTACAACTGAGGCTTTGAAACTTTTGGAAAAT
1 AAAATGCTCCCCTACAACT-AAGCTTTGAAACTTTT-AAAAAT
7643480 AAAATG
1 AAAATG
7643486 AGATCATACC
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 73 0.65
43 40 0.35
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (41 bp):
AAAATGCTCCCCTACAACTAAGCTTTGAAACTTTTAAAAAT
Done.