Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 45 of 106
Found at i:7817288 original size:114 final size:113
Alignment explanation
Indices: 7817155--7817362 Score: 283
Period size: 114 Copynumber: 1.8 Consensus size: 113
7817145 AATGATTAAT
* * * *
7817155 TTTAAGGAAAAATTAATATTTTAATTTTTTTTTTCAAA-TCTTTGAAATTACTTTTCATTTTAAG
1 TTTAAGGAAAAATTAATATTTCAACTTTTTTCTCCAAACTCTTTGAAATTA-TTTTCATTTTAA-
* *
7817219 AAAAAAATGGATATTTTATCTTTTTCTTCAAAAATTTGAAATTATTTTCA
64 AAAAAAATGAATATTCTATCTTTTTCTTCAAAAATTTGAAATTATTTTCA
* * *
7817269 TTTAAGGAAAAATTGATATTTCAACTTTTTTCTCCAAACTTTTTTGAAATTATTTTTATTTTAAA
1 TTTAAGGAAAAATTAATATTTCAACTTTTTTCTCCAAAC-TCTTTGAAATTATTTTCATTTTAAA
* *
7817334 GAAAAATTAATATTCTATCTTTTTCTTCA
65 AAAAAATGAATATTCTATCTTTTTCTTCA
7817363 TTTCTTGAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
114 59 0.73
115 11 0.14
116 11 0.14
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.50
Consensus pattern (113 bp):
TTTAAGGAAAAATTAATATTTCAACTTTTTTCTCCAAACTCTTTGAAATTATTTTCATTTTAAAA
AAAAATGAATATTCTATCTTTTTCTTCAAAAATTTGAAATTATTTTCA
Found at i:7817393 original size:114 final size:111
Alignment explanation
Indices: 7817155--7817439 Score: 276
Period size: 114 Copynumber: 2.5 Consensus size: 111
7817145 AATGATTAAT
* * * * * * *
7817155 TTTAAGGAAAAATTAATATTTTAATTTTTTTTTTCAAA-TCTTTGAAATTACTTTTCATTTTAAG
1 TTTAAAGAAAAATTGATATTTCAA-CTTTTTTCTCAAATTTTTTGAAATTA-TTTTTATTTTAAG
* *
7817219 AAAAAAATGGATATTTTATCTTTTTCTTCAAAAATTTGAAATTATTTTCA
64 AAAAAAATGAATATTCTATCTTTTTCTTC-AAAATTTGAAATTATTTT-A
*
7817269 TTTAAGGAAAAATTGATATTTCAACTTTTTTCTCCAAACTTTTTTGAAATTATTTTTATTTTAA-
1 TTTAAAGAAAAATTGATATTTCAACTTTTTTCT-CAAA-TTTTTTGAAATTATTTTTATTTTAAG
* * **
7817333 AGAAAAATTAATATTCTATCTTTTTCTTC-ATTTCTTGAAATTATCTTT-
64 AAAAAAATGAATATTCTATCTTTTTCTTCAAAAT-TTGAAATTAT-TTTA
* * *
7817381 TTGTATAAGAAAATTTGATATTTCAAC-ATTTTCT-TAATATTTTTGAAATTATTTTTATT
1 TT-TA-AAGAAAAATTGATATTTCAACTTTTTTCTCAAAT-TTTTTGAAATTATTTTTATT
7817440 ATATTTTTTT
Statistics
Matches: 147, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
110 1 0.01
111 22 0.15
112 4 0.03
113 25 0.17
114 73 0.50
115 11 0.07
116 11 0.07
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (111 bp):
TTTAAAGAAAAATTGATATTTCAACTTTTTTCTCAAATTTTTTGAAATTATTTTTATTTTAAGAA
AAAAATGAATATTCTATCTTTTTCTTCAAAATTTGAAATTATTTTA
Found at i:7817402 original size:55 final size:54
Alignment explanation
Indices: 7817254--7817436 Score: 131
Period size: 55 Copynumber: 3.3 Consensus size: 54
7817244 CTTCAAAAAT
* * * * *
7817254 TTGAAATTATTTTCATT-TAAGGAAAAATTGATATTTCAACTTTTTTCTCCAA-ACTTTT
1 TTGAAATTATTTT--TTGTAAAGAAAAATTAATATTTCAAC-ATTTTCT-TAATA--TTC
* * * *
7817312 TTGAAATTATTTTTATTTTAAAGAAAAATTAATA-TTCTATCTTTTTCTTCAT-TTC
1 TTGAAATTA-TTTT-TTGTAAAGAAAAATTAATATTTC-AACATTTTCTTAATATTC
* * *
7817367 TTGAAATTATCTTTTTGTATAAGAAAATTTGATATTTCAACATTTTCTTAATATTT
1 TTGAAATTAT-TTTTTGTA-AAGAAAAATTAATATTTCAACATTTTCTTAATATTC
7817423 TTGAAATTATTTTT
1 TTGAAATTATTTTT
7817437 ATTATATTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
54 5 0.05
55 41 0.39
56 15 0.14
57 1 0.01
58 22 0.21
59 20 0.19
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (54 bp):
TTGAAATTATTTTTTGTAAAGAAAAATTAATATTTCAACATTTTCTTAATATTC
Found at i:7819661 original size:3 final size:3
Alignment explanation
Indices: 7819643--7819725 Score: 78
Period size: 3 Copynumber: 26.7 Consensus size: 3
7819633 TAATTTAATT
* * * *
7819643 TTA TTA TTT TTCA TTA TTA TTA TGA TTA TTA TTA TTA TTTA TCA ATA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
*
7819690 TTA TTTA TCTA TTA CTA TTA TT- TTA TTA TTA TTA TT
1 TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TT
7819726 TTCTTTTAGT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.03
3 52 0.80
4 11 0.17
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7819678 original size:31 final size:31
Alignment explanation
Indices: 7819643--7819724 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
7819633 TAATTTAATT
7819643 TTATTATTTTTCATTATTATTATGAT-TATTA
1 TTATTATTTTTCATTATTATTAT-ATCTATTA
* *
7819674 TTATTATTTATCAATATTATT-TATCTATTA
1 TTATTATTTTTCATTATTATTATATCTATTA
*
7819704 CTATTA-TTTT-ATTATTATTAT
1 TTATTATTTTTCATTATTATTAT
7819725 TTTCTTTTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
28 8 0.18
29 6 0.14
30 11 0.25
31 19 0.43
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (31 bp):
TTATTATTTTTCATTATTATTATATCTATTA
Found at i:7819738 original size:14 final size:14
Alignment explanation
Indices: 7819643--7819770 Score: 77
Period size: 14 Copynumber: 8.9 Consensus size: 14
7819633 TAATTTAATT
*
7819643 TTATTATT-TTTCA
1 TTATTATTATTTTA
*
7819656 TTATTATTATGATTA
1 TTATTATTAT-TTTA
7819671 TTATTATTATTTATCA
1 TTATTATTATTT-T-A
* *
7819687 ATATTATT-TATCTA
1 TTATTATTAT-TTTA
*
7819701 TTACTATTATTTTA
1 TTATTATTATTTTA
*
7819715 TTATTATTATTTTC
1 TTATTATTATTTTA
7819729 TT-TTAGTTATTTGT-
1 TTATTA-TTATTT-TA
*
7819743 TAATATATT-TATTTA
1 TTAT-TATTAT-TTTA
*
7819758 TTATTTTTATTTT
1 TTATTATTATTTT
7819771 TATCTTTTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 25
0.70 0.10 0.20
Matches are distributed among these distances:
13 11 0.12
14 41 0.46
15 26 0.29
16 11 0.12
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.66
Consensus pattern (14 bp):
TTATTATTATTTTA
Found at i:7819778 original size:13 final size:13
Alignment explanation
Indices: 7819642--7819773 Score: 53
Period size: 13 Copynumber: 10.1 Consensus size: 13
7819632 TTAATTTAAT
7819642 TTTATTATTTTTCA
1 TTTATTATTTTT-A
* *
7819656 -TTATTATTATGA
1 TTTATTATTTTTA
*
7819668 -TTATTATTATTA
1 TTTATTATTTTTA
* * *
7819680 TTTATCAATATTA
1 TTTATTATTTTTA
**
7819693 TTTATCTATTACTA
1 TTTAT-TATTTTTA
*
7819707 -TTATT-TTATTA
1 TTTATTATTTTTA
7819718 -TTATTATTTTCT-
1 TTTATTATTTT-TA
7819730 TTTAGTTATTTGTTAA
1 TTTA-TTATTT-TT-A
*
7819746 TATATTTATTTATTA
1 TTTA-TTATTT-TTA
7819761 TTT-TTATTTTTA
1 TTTATTATTTTTA
7819773 T
1 T
7819774 CTTTTTTTCT
Statistics
Matches: 95, Mismatches: 14, Indels: 20
0.74 0.11 0.16
Matches are distributed among these distances:
11 10 0.11
12 20 0.21
13 38 0.40
14 12 0.13
15 4 0.04
16 11 0.12
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (13 bp):
TTTATTATTTTTA
Found at i:7820520 original size:3 final size:3
Alignment explanation
Indices: 7820509--7820542 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
7820499 TATTTTTTTA
7820509 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7820543 TAGAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:7820524 original size:10 final size:10
Alignment explanation
Indices: 7820509--7820586 Score: 60
Period size: 9 Copynumber: 8.3 Consensus size: 10
7820499 TATTTTTTTA
7820509 ATTATTTATT
1 ATTATTTATT
7820519 ATTA-TTATT
1 ATTATTTATT
7820528 ATTA-TTATT
1 ATTATTTATT
**
7820537 ATTATTTAGA
1 ATTATTTATT
**
7820547 ATTATTTGGT
1 ATTATTTATT
7820557 ATT-TCTTATT
1 ATTAT-TTATT
7820567 A-T-TTTATT
1 ATTATTTATT
*
7820575 -TTATTTCTT
1 ATTATTTATT
7820584 ATT
1 ATT
7820587 TCTTATTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
8 6 0.11
9 26 0.46
10 24 0.43
ACGTcount: A:0.27, C:0.03, G:0.04, T:0.67
Consensus pattern (10 bp):
ATTATTTATT
Found at i:7820597 original size:20 final size:20
Alignment explanation
Indices: 7820556--7820595 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7820546 AATTATTTGG
*
7820556 TATTTCTTATTATTTTATTT
1 TATTTCTTATTATCTTATTT
7820576 TATTTCTTATT-TCTTATTT
1 TATTTCTTATTATCTTATTT
7820595 T
1 T
7820596 TAATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.75
Consensus pattern (20 bp):
TATTTCTTATTATCTTATTT
Found at i:7820690 original size:14 final size:15
Alignment explanation
Indices: 7820671--7820704 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7820661 CTTAAAAAAA
7820671 TAAAAT-AAAATTTC
1 TAAAATAAAAATTTC
7820685 TAAAATAAAAATTTC
1 TAAAATAAAAATTTC
*
7820700 CAAAA
1 TAAAA
7820705 GCATTTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAATAAAAATTTC
Found at i:7832834 original size:127 final size:129
Alignment explanation
Indices: 7832496--7832848 Score: 325
Period size: 127 Copynumber: 2.8 Consensus size: 129
7832486 GTTCGTTACC
* ** * * * *
7832496 TCTGTTTAGAGGAGTTATTTAT-TTTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGC--AATTT
1 TCTGTTTAGAAGAGCAATTTATCTCTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTATTT
* * ***
7832557 A-TTTTC-CAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTAAAAGCTGTGATGCT
66 ATTTTTCTAAAAATTGTTAAGCCTCTGTTTAGAGGAGCAATTTACTTTTAAAAGCTGTGATGCT
* ** * * *
7832619 TCTGTTTAGAGGAGTTATTTATTTCTTCAAAAGTTGTTAAGCCTTTGATTAGAGGAGCTTTGTTT
1 TCTGTTTAGAAGAGCAATTTATCTCTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTATTT
* * * * * * * *
7832684 ATTTTTCTCAAAGTTGTTGAGCCTTTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
66 ATTTTTCTAAAAATTGTTAAGCCTCTGTTTAGAGGAGCAATTTACTTTTAAAAGCTGTGATG-CT
* *
7832749 T-TGTTTAGAAGAGCAATTTA-CT-TTCAAAAGTTG-TATTGCCTCTG-TCTAGAGTAGCTTTAT
1 TCTGTTTAGAAGAGCAATTTATCTCTTCAAAAGTTGTTA-AGCCTCTGAT-TAGAGGAGCTTTAT
*
7832809 TTATTTCTT-TAAAAATTGTTAAGCCTCTGATTAGAGGAGC
64 TTATTT-TTCTAAAAATTGTTAAGCCTCTGTTTAGAGGAGC
7832849 TTTGTTTATT
Statistics
Matches: 194, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
123 22 0.11
124 4 0.02
125 26 0.13
126 3 0.02
127 65 0.34
128 8 0.04
129 63 0.32
130 3 0.02
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (129 bp):
TCTGTTTAGAAGAGCAATTTATCTCTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTATTT
ATTTTTCTAAAAATTGTTAAGCCTCTGTTTAGAGGAGCAATTTACTTTTAAAAGCTGTGATGCT
Found at i:7832882 original size:45 final size:43
Alignment explanation
Indices: 7832479--7833174 Score: 445
Period size: 41 Copynumber: 16.5 Consensus size: 43
7832469 AGCCATTTAC
7832479 TTTC-AAAGTTCGTT-A-CCTCTGTTTAGAGGAG-TTATTTATT
1 TTTCAAAAGTT-GTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
*
7832519 TTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGC-AATTTA-T
1 TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
* * * * *
7832559 TTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC-AATTTACT
1 TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
* *
7832601 TTT-AAAAGCTG-TGATGCTTCTGTTTAGAGGAG-TTATTTATT
1 TTTCAAAAGTTGTTGA-GCCTCTGTTTAGAGGAGCTTATTTATT
* * * *
7832642 TCTTCAAAAGTTGTTAAGCCTTTGATTAGAGGAGCTTTGTTTATT
1 T-TTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGC-TTATTTATT
* * *
7832687 TTTCTCAAAGTTGTTGAGCCTTTGTTTAGAGGAGC-AATTTATT
1 TTTC-AAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
* * * * * *
7832730 TTTC-AAAGTTGTGGTGCCTTTGTTTAGAAGAGC-AATTTA-C
1 TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
* * *
7832770 TTTCAAAAGTTGTAT-TGCCTCTGTCTAGAGTAGCTTTATTTATT
1 TTTCAAAAGTTGT-TGAGCCTCTGTTTAGAGGAGC-TTATTTATT
* * * * *
7832814 TCTTTAAAAATTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATT
1 T-TTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGC-TTATTTATT
* * *
7832859 TTTCTTAAAGTTGTTGAGTCTCTGTTTACG-GGAGC-AATTTATT
1 TTTC-AAAAGTTGTTGAGCCTCTGTTTA-GAGGAGCTTATTTATT
* * * * *
7832902 TTTC-AAAGTT-ATGATGCCTCTGTTTAAAAGAGC-AATTTA-C
1 TTTCAAAAGTTGTTGA-GCCTCTGTTTAGAGGAGCTTATTTATT
* * *
7832942 TTTCAAAAGTTGTATTA-CCTCTGTCTAGATGAGCTTTATTTATTT
1 TTTCAAAAGTTGT-TGAGCCTCTGTTTAGAGGAGC-TTATTTA-TT
* *
7832987 TTTCAAAA---GTTGAGCCTCTGTTTAGAGGAGCTTTGTTTACT
1 TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGC-TTATTTATT
** *** *
7833028 TTTC-AAAGTCATTGAGCCTCTACCTAGA-GAG-TAATTT-TCT
1 TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTAT-T
* * *
7833068 TTTCAAAAGTCGTTGAGTCTCTATTTAGAGGAGC---TTTATT
1 TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
* * * * *
7833108 TTTCAAAAGTCGTTGAACCTCT-TCCTAGAGGAACTTTGTTTATT
1 TTTCAAAAGTTGTTGAGCCTCTGT-TTAGAGGAGC-TTATTTATT
*
7833152 TTACTC-AAAGTCGTTGAGCCTCT
1 TT--TCAAAAGTTGTTGAGCCTCT
7833175 ACCTAGAAGA
Statistics
Matches: 529, Mismatches: 80, Indels: 89
0.76 0.11 0.13
Matches are distributed among these distances:
39 4 0.01
40 72 0.14
41 212 0.40
42 36 0.07
43 67 0.13
44 17 0.03
45 118 0.22
46 3 0.01
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (43 bp):
TTTCAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTATTTATT
Found at i:7832895 original size:172 final size:171
Alignment explanation
Indices: 7832494--7833048 Score: 756
Period size: 172 Copynumber: 3.3 Consensus size: 171
7832484 AAGTTCGTTA
* *
7832494 CCTCTGTTTAGAGGAG--TTATTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAGGAGCAATT
1 CCTCTGATTAGAGGAGCTTTGTTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCAATT
* * * * *
7832556 TATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTAAAAGCTGTGA-TGCTT
66 TATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAAGAGCAATTTACTTTCAAAAGTTGT-ATTGCCT
* * * *
7832620 CTGTTTAGAGGAG--TTATTTATTTCTTCAAAAGTTGTTAAG
130 CTGTCTAGAGTAGCTTTATTTATTTCTTTAAAAATTGTTAAG
* *
7832660 CCTTTGATTAGAGGAGCTTTGTTTATTTTTCTCAAAGTTGTTGAGCCTTTGTTTAGAGGAGCAAT
1 CCTCTGATTAGAGGAGCTTTGTTTATTTTTCT-AAAGTTGTTGAGCCTCTGTTTAGAGGAGCAAT
*
7832725 TTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGAAGAGCAATTTACTTTCAAAAGTTGTATTGCCT
65 TTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAAGAGCAATTTACTTTCAAAAGTTGTATTGCCT
7832790 CTGTCTAGAGTAGCTTTATTTATTTCTTTAAAAATTGTTAAG
130 CTGTCTAGAGTAGCTTTATTTATTTCTTTAAAAATTGTTAAG
*
7832832 CCTCTGATTAGAGGAGCTTTGTTTATTTTTCTTAAAGTTGTTGAGTCTCTGTTTACG-GGAGCAA
1 CCTCTGATTAGAGGAGCTTTGTTTATTTTTC-TAAAGTTGTTGAGCCTCTGTTTA-GAGGAGCAA
* * * *
7832896 TTTATTTTTCAAAGTTATGATGCCTCTGTTTAAAAGAGCAATTTACTTTCAAAAGTTGTATTACC
64 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAAGAGCAATTTACTTTCAAAAGTTGTATTGCC
* *
7832961 TCTGTCTAGA-TGAGCTTTATTTATTT-TTTCAAAA--GTTGAG
129 TCTGTCTAGAGT-AGCTTTATTTATTTCTTTAAAAATTGTTAAG
* * **
7833001 CCTCTGTTTAGAGGAGCTTTGTTTACTTTTC-AAAGTCATTGAGCCTCT
1 CCTCTGATTAGAGGAGCTTTGTTTATTTTTCTAAAGTTGTTGAGCCTCT
7833049 ACCTAGAGAG
Statistics
Matches: 350, Mismatches: 29, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
166 14 0.04
167 14 0.04
168 12 0.03
169 35 0.10
170 99 0.28
171 8 0.02
172 166 0.47
173 2 0.01
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.43
Consensus pattern (171 bp):
CCTCTGATTAGAGGAGCTTTGTTTATTTTTCTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCAATT
TATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAAGAGCAATTTACTTTCAAAAGTTGTATTGCCTC
TGTCTAGAGTAGCTTTATTTATTTCTTTAAAAATTGTTAAG
Found at i:7833180 original size:45 final size:40
Alignment explanation
Indices: 7833022--7833181 Score: 137
Period size: 40 Copynumber: 3.9 Consensus size: 40
7833012 AGGAGCTTTG
* *
7833022 TTTACTTTTCAAAGTCATTGAGCCTCTACCTAGAGAGTAA-T
1 TTTATTTTTCAAAGTCGTTGAGCCTCTACCTAGAG-G-AACT
* * ** *
7833063 TTT-CTTTTCAAAAGTCGTTGAGTCTCTATTTAGAGGAGC-
1 TTTATTTTTC-AAAGTCGTTGAGCCTCTACCTAGAGGAACT
* *
7833102 TTTATTTTTCAAAAGTCGTTGAACCTCTTCCTAGAGGAACTTT
1 TTTATTTTTC-AAAGTCGTTGAGCCTCTACCTAGAGGAAC--T
7833145 GTTTATTTTACTCAAAGTCGTTGAGCCTCTACCTAGA
1 -TTTATTTT--TCAAAGTCGTTGAGCCTCTACCTAGA
7833182 AGAGTTTTAA
Statistics
Matches: 96, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
39 4 0.04
40 36 0.38
41 24 0.25
44 8 0.08
45 22 0.23
46 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (40 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTACCTAGAGGAACT
Found at i:7833223 original size:14 final size:15
Alignment explanation
Indices: 7833206--7833241 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
7833196 AAGTTTAACT
*
7833206 AAAAAACAACAAAA-
1 AAAAAAAAACAAAAC
7833220 AAAAAAAAACAAAAC
1 AAAAAAAAACAAAAC
7833235 AAAAAAA
1 AAAAAAA
7833242 GTGTTGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAACAAAAC
Found at i:7833228 original size:17 final size:17
Alignment explanation
Indices: 7833206--7833241 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7833196 AAGTTTAACT
7833206 AAAAAACAACAA-AAAAA
1 AAAAAACAA-AACAAAAA
7833223 AAAAAACAAAACAAAAA
1 AAAAAACAAAACAAAAA
7833240 AA
1 AA
7833242 GTGTTGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAACAAAACAAAAA
Found at i:7833411 original size:5 final size:5
Alignment explanation
Indices: 7833401--7833430 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
7833391 TCCTTTTCCT
*
7833401 TTTAA TTTAA TTTAA TTTAA ATTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA
7833431 ATTTTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTTAA
Found at i:7833452 original size:3 final size:3
Alignment explanation
Indices: 7833434--7833569 Score: 95
Period size: 3 Copynumber: 44.7 Consensus size: 3
7833424 AATTTAAATT
* *
7833434 TTA TTA TTT TTCA TTA TTA TTA TGA TTA TTA TTA TTA TTA TTTA TCTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA
* *
7833482 TTA ATA TT- TT- TTA TCTA TTA TTA TT- TTA TTA TTA TTA TT- TTC
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
7833524 TT- TTA GTTA TCTG TTA ATA -TA TTTA TCTA TTA TTT TTA TTA TTA TT
1 TTA TTA -TTA T-TA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TT
7833570 TTTTCTTGAT
Statistics
Matches: 109, Mismatches: 11, Indels: 26
0.75 0.08 0.18
Matches are distributed among these distances:
2 12 0.11
3 76 0.70
4 21 0.19
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7833477 original size:48 final size:48
Alignment explanation
Indices: 7833425--7833520 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
7833415 ATTTAAATTA
* *
7833425 ATTTAAATTTTATTATTTTTCAT-TATTATTATGATTATTATTATTATT
1 ATTTAAATATTAATATTTTTCATCTATTATTAT-ATTATTATTATTATT
** * *
7833473 ATTTATCTATTAATATTTTTTATCTATTATTATTTTATTATTATTATT
1 ATTTAAATATTAATATTTTTCATCTATTATTATATTATTATTATTATT
7833521 TTCTTTTAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 32 0.78
49 9 0.22
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (48 bp):
ATTTAAATATTAATATTTTTCATCTATTATTATATTATTATTATTATT
Found at i:7833522 original size:31 final size:30
Alignment explanation
Indices: 7833434--7833573 Score: 101
Period size: 31 Copynumber: 4.4 Consensus size: 30
7833424 AATTTAAATT
* *
7833434 TTATTATT-TTTCATTATTATTATGATTATTA
1 TTATTATTATTTTATTATTATTAT--TTTTTA
*
7833465 TTATTATTA-TTTATCTATTAATATTTTTTA
1 TTATTATTATTTTAT-TATTATTATTTTTTA
7833495 TCTATTATTATTTTATTATTATTATTTTCTT-
1 T-TATTATTATTTTATTATTATTATTTT-TTA
*
7833526 TTAGTTATCTGTTAATATATTTATCTATTA-TTTTTA
1 TTA-TTAT-TATT--T-TA-TTAT-TATTATTTTTTA
7833562 TTATTATT-TTTT
1 TTATTATTATTTT
7833574 CTTGATAAAT
Statistics
Matches: 91, Mismatches: 5, Indels: 27
0.74 0.04 0.22
Matches are distributed among these distances:
30 9 0.10
31 37 0.41
32 18 0.20
33 2 0.02
34 2 0.02
35 8 0.09
36 10 0.11
37 5 0.05
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.67
Consensus pattern (30 bp):
TTATTATTATTTTATTATTATTATTTTTTA
Found at i:7833541 original size:55 final size:55
Alignment explanation
Indices: 7833432--7833576 Score: 165
Period size: 55 Copynumber: 2.7 Consensus size: 55
7833422 TTAATTTAAA
* * * *
7833432 TTTTAT-TATTTTTCATTATTATTATGATTATTATTATTATTATTTATCTATTAATATT
1 TTTTATCTATTATT-ATT-TTATTATTATTATT-TTCTTATTAGTTATCTATTAATA-T
*
7833490 TTTTATCTATTATTATTTTATTATTATTATTTTCTT-TTAGTTATCTGTTAATAT
1 TTTTATCTATTATTATTTTATTATTATTATTTTCTTATTAGTTATCTATTAATAT
*
7833544 ATTTATCTATTA-T-TTTTATTATTATT-TTTTCTT
1 TTTTATCTATTATTATTTTATTATTATTATTTTCTT
7833577 GATAAATTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
51 7 0.09
52 13 0.16
53 1 0.01
54 12 0.15
55 15 0.19
56 4 0.05
57 13 0.16
58 9 0.11
59 6 0.08
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (55 bp):
TTTTATCTATTATTATTTTATTATTATTATTTTCTTATTAGTTATCTATTAATAT
Found at i:7834488 original size:14 final size:15
Alignment explanation
Indices: 7834469--7834502 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7834459 CTTAAAAAAA
7834469 TAAAAT-AAAATTTC
1 TAAAATAAAAATTTC
7834483 TAAAATAAAAATTTC
1 TAAAATAAAAATTTC
*
7834498 CAAAA
1 TAAAA
7834503 GCATTTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAATAAAAATTTC
Found at i:7835254 original size:21 final size:22
Alignment explanation
Indices: 7835217--7835283 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 22
7835207 AATGTTATGA
* *
7835217 CAAAGACGTTATTAAAATTTTAT
1 CAAAGA-GTTATCAAAATTATAT
7835240 CAAAGA-TTATCAAAATTATAT
1 CAAAGAGTTATCAAAATTATAT
* *
7835261 -AAATAGTTACCAAAATTATAT
1 CAAAGAGTTATCAAAATTATAT
7835282 CA
1 CA
7835284 TAAGTTGCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
20 4 0.11
21 27 0.71
22 1 0.03
23 6 0.16
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.34
Consensus pattern (22 bp):
CAAAGAGTTATCAAAATTATAT
Found at i:7835289 original size:21 final size:20
Alignment explanation
Indices: 7835230--7835348 Score: 69
Period size: 21 Copynumber: 5.7 Consensus size: 20
7835220 AGACGTTATT
* *
7835230 AAAATTTTATCAAAGATTATC
1 AAAATTATATCAAAG-TTACC
*
7835251 AAAATTATATAAATAGTTACC
1 AAAATTATATCAA-AGTTACC
*
7835272 AAAATTATATCATAAGTT-GC
1 AAAATTATATCA-AAGTTACC
* * *
7835292 TAAATTAATATGGAATGTTACC
1 AAAATT-ATAT-CAAAGTTACC
* * * *
7835314 AAATTTGTATTGAAAGTTATC
1 AAAATTATA-TCAAAGTTACC
*
7835335 AAAATTTTATCAAA
1 AAAATTATATCAAA
7835349 AATTTTTTAA
Statistics
Matches: 75, Mismatches: 17, Indels: 13
0.71 0.16 0.12
Matches are distributed among these distances:
20 10 0.13
21 55 0.73
22 10 0.13
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.37
Consensus pattern (20 bp):
AAAATTATATCAAAGTTACC
Found at i:7835613 original size:2 final size:2
Alignment explanation
Indices: 7835606--7835636 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7835596 TATAAAATTA
7835606 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7835637 GATAATGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7840516 original size:19 final size:20
Alignment explanation
Indices: 7840488--7840532 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
7840478 TTTTGTTTTG
* *
7840488 TTTTTTGTTTG-TGTTCTTA
1 TTTTTGGTTTGATGTTATTA
*
7840507 TTTTTGGTTTGATTTTATTA
1 TTTTTGGTTTGATGTTATTA
7840527 TTTTTG
1 TTTTTG
7840533 CCTGGGGGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.09, C:0.02, G:0.16, T:0.73
Consensus pattern (20 bp):
TTTTTGGTTTGATGTTATTA
Found at i:7852294 original size:26 final size:26
Alignment explanation
Indices: 7852265--7852317 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7852255 AGATCGATTG
7852265 AAATTGCCTCAGCATTACAATAAGGT
1 AAATTGCCTCAGCATTACAATAAGGT
7852291 AAATTGCCTCAGCATTACAATAAGGT
1 AAATTGCCTCAGCATTACAATAAGGT
7852317 A
1 A
7852318 CATCATTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (26 bp):
AAATTGCCTCAGCATTACAATAAGGT
Found at i:7853993 original size:23 final size:23
Alignment explanation
Indices: 7853909--7854179 Score: 154
Period size: 23 Copynumber: 11.2 Consensus size: 23
7853899 TTTACTTATA
7853909 AATATTAT--TATATTAATAAAT
1 AATATTATAATATATTAATAAAT
* * *
7853930 AAATAATATATTATTAATAAATAATAT
1 -AATATTATAATA-T-ATTAATAA-AT
*
7853957 ACTATTAATATAATATATTAATAAAT
1 AATATT-ATA--ATATATTAATAAAT
* *
7853983 AATATTCTAATAAATTAATAAAT
1 AATATTATAATATATTAATAAAT
* *
7854006 AATATTATAATCTATTAACAAAT
1 AATATTATAATATATTAATAAAT
* * *
7854029 AATATTATATTAATAAATAATATAT
1 AATATTATAAT-AT-ATTAATAAAT
* *
7854054 AAATCAATATTATTATATTAATAAAT
1 -AAT-ATTA-TAATATATTAATAAAT
* * * *
7854080 ATTATAATAATATATTAACATAT
1 AATATTATAATATATTAATAAAT
* *
7854103 AAT-TTATTAT-TAATAAATAATAT
1 AATATTATAATAT-ATTAATAA-AT
* *
7854126 ACTGTTAATATAATATATTAATAAAT
1 AATATT-ATA--ATATATTAATAAAT
* *
7854152 AATAGTATAATATATTAATAGAT
1 AATATTATAATATATTAATAAAT
7854175 AATAT
1 AATAT
7854180 AAAGAATAAT
Statistics
Matches: 188, Mismatches: 41, Indels: 39
0.70 0.15 0.15
Matches are distributed among these distances:
21 1 0.01
22 17 0.09
23 78 0.41
24 7 0.04
25 17 0.09
26 34 0.18
27 26 0.14
28 6 0.03
29 2 0.01
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (23 bp):
AATATTATAATATATTAATAAAT
Found at i:7854048 original size:41 final size:40
Alignment explanation
Indices: 7853996--7854125 Score: 141
Period size: 41 Copynumber: 3.4 Consensus size: 40
7853986 ATTCTAATAA
7853996 ATTAATAAATAATATTATAATCTATTAACAAATAATATTAT
1 ATTAATAAATAATATTATAAT-TATTAACAAATAATATTAT
*
7854037 ATTAATAAATAATA-TATAA--A-T--C-AATATTATTAT
1 ATTAATAAATAATATTATAATTATTAACAAATAATATTAT
* * *
7854070 ATTAATAAATATTATAATAATATATTAACATATAAT-TTATT
1 ATTAATAAATAATATTATAAT-TATTAACAAATAATATTA-T
7854111 ATTAATAAATAATAT
1 ATTAATAAATAATAT
7854126 ACTGTTAATA
Statistics
Matches: 74, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
33 23 0.31
34 5 0.07
36 1 0.01
37 2 0.03
38 1 0.01
40 9 0.12
41 33 0.45
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (40 bp):
ATTAATAAATAATATTATAATTATTAACAAATAATATTAT
Found at i:7854171 original size:31 final size:31
Alignment explanation
Indices: 7853927--7854171 Score: 113
Period size: 31 Copynumber: 7.9 Consensus size: 31
7853917 TATATTAATA
* * *
7853927 AATAAATAATATATTATTAATAAATAATATACT
1 AATAAATAATATACTAATAAT--ATAATATATT
* *
7853960 ATTAATATAATATATTAATAA-ATAATAT-TCT
1 AATAA-ATAATATACTAATAATATAATATAT-T
* * *
7853991 AATAAATTAATA-AATAATATTATAATCTATT
1 AATAAA-TAATATACTAATAATATAATATATT
* *
7854022 AACAAATAATATTA-TATTAATA-AATA-A-T
1 AATAAATAATA-TACTAATAATATAATATATT
* *
7854050 ATATAAATCAATATTA-TTATATTAATAA-ATATT
1 A-ATAAAT-AATA-TACTAATAAT-ATAATATATT
* *
7854083 -AT-AATAATATATTAA-CATATAATTTATTATT
1 AATAAATAATATACTAATAATATAA--TA-TATT
**
7854114 AATAAATAATATACTGTTAATATAATATATT
1 AATAAATAATATACTAATAATATAATATATT
7854145 AATAAATAATAGTA-TAAT-ATATTAATA
1 AATAAATAATA-TACTAATAATA-TAATA
7854172 GATAATATAA
Statistics
Matches: 165, Mismatches: 24, Indels: 48
0.70 0.10 0.20
Matches are distributed among these distances:
27 4 0.02
28 5 0.03
29 12 0.07
30 33 0.20
31 65 0.39
32 11 0.07
33 15 0.09
34 20 0.12
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (31 bp):
AATAAATAATATACTAATAATATAATATATT
Found at i:7854253 original size:19 final size:19
Alignment explanation
Indices: 7854208--7854253 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7854198 TTATTTTAAG
*
7854208 TATTTTTATATTAACATAA
1 TATTTTAATATTAACATAA
*
7854227 TATTTTAATATTAA-ATAT
1 TATTTTAATATTAACATAA
7854245 TATTATTAA
1 TATT-TTAA
7854254 AATATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTTAATATTAACATAA
Found at i:7854311 original size:26 final size:24
Alignment explanation
Indices: 7854281--7854339 Score: 82
Period size: 26 Copynumber: 2.4 Consensus size: 24
7854271 ATATTAATAA
7854281 ATTTAATAATAAATAATTTCAACAT
1 ATTTAATAATAAATAATTTCAA-AT
* *
7854306 ACTTTAATAATAAATTATTTTAAAT
1 A-TTTAATAATAAATAATTTCAAAT
7854331 ATTTAATAA
1 ATTTAATAA
7854340 GTTATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 8 0.26
25 4 0.13
26 19 0.61
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (24 bp):
ATTTAATAATAAATAATTTCAAAT
Found at i:7854339 original size:21 final size:23
Alignment explanation
Indices: 7854313--7854363 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
7854303 CATACTTTAA
*
7854313 TAATAAATTATTTTAA-A-TATT
1 TAATAAATTATATTAATATTATT
*
7854334 TAATAAGTTATATTAATATTATT
1 TAATAAATTATATTAATATTATT
7854357 TAA-AAAT
1 TAATAAAT
7854364 AAATTTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 14 0.56
22 4 0.16
23 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TAATAAATTATATTAATATTATT
Found at i:7854478 original size:13 final size:13
Alignment explanation
Indices: 7854456--7854488 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7854446 AATATGAATA
7854456 TATTTTT-AAAAT
1 TATTTTTAAAAAT
7854468 TATTGTTTAAAAAT
1 TATT-TTTAAAAAT
7854482 TATTTTT
1 TATTTTT
7854489 CGCGAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 6 0.32
14 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (13 bp):
TATTTTTAAAAAT
Found at i:7855162 original size:17 final size:17
Alignment explanation
Indices: 7855126--7855181 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
7855116 CTCCTTGTTT
* *
7855126 TTTTTTTTTTAATTTC-
1 TTTTTTATTTGATTTCA
*
7855142 TTTTTTATTTGGTTTCA
1 TTTTTTATTTGATTTCA
* *
7855159 -TTTTTATTTTATTTTA
1 TTTTTTATTTGATTTCA
7855175 TTTTTTA
1 TTTTTTA
7855182 GATAAATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
16 26 0.81
17 6 0.19
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTTTTATTTGATTTCA
Found at i:7859746 original size:19 final size:19
Alignment explanation
Indices: 7859720--7859769 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
7859710 AGTTTTTTTA
7859720 TATAATATTTTAATAAGATT
1 TATAATATTTTAATAA-ATT
*
7859740 T-TAATATATATAATAAATT
1 TATAATAT-TTTAATAAATT
7859759 TATATATATTT
1 TATA-ATATTT
7859770 ATTATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 10 0.40
20 11 0.44
21 4 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TATAATATTTTAATAAATT
Found at i:7860438 original size:19 final size:20
Alignment explanation
Indices: 7860414--7860463 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
7860404 TGTCCCAAAA
* *
7860414 AAAATAAAAATAATA-ATAC
1 AAAATAAAAAAAAAATATAC
7860433 AAAATACAAAAAAAAATATAC
1 AAAATA-AAAAAAAAATATAC
*
7860454 AAAACAAAAA
1 AAAATAAAAA
7860464 GAAGAAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 6 0.23
20 11 0.42
21 9 0.35
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAATAAAAAAAAAATATAC
Found at i:7861931 original size:16 final size:16
Alignment explanation
Indices: 7861909--7861989 Score: 92
Period size: 16 Copynumber: 4.9 Consensus size: 16
7861899 AAACCCCATA
*
7861909 AAAATCCAAAATCTCT
1 AAAATCCAAAATCCCT
*
7861925 TAAATCC-AAATCCCCT
1 AAAATCCAAAAT-CCCT
*
7861941 AAAATCCAAAACCCCT
1 AAAATCCAAAATCCCT
*
7861957 AAAATCCAAAACCTCCCC
1 AAAATCCAAAA--TCCCT
7861975 AAAATCCAAAATCCC
1 AAAATCCAAAATCCC
7861990 AAACTTTTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
15 4 0.07
16 34 0.62
17 3 0.05
18 14 0.25
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAATCCAAAATCCCT
Found at i:7861947 original size:32 final size:33
Alignment explanation
Indices: 7861909--7861989 Score: 103
Period size: 32 Copynumber: 2.5 Consensus size: 33
7861899 AAACCCCATA
* *
7861909 AAAATCCAAAATCTCTTAAATCC-AAA-TCCCC
1 AAAATCCAAAATCCCTAAAATCCAAAACTCCCC
*
7861940 TAAAATCCAAAACCCCTAAAATCCAAAACCTCCCC
1 -AAAATCCAAAATCCCTAAAATCCAAAA-CTCCCC
7861975 AAAATCCAAAATCCC
1 AAAATCCAAAATCCC
7861990 AAACTTTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 20 0.48
33 3 0.07
34 14 0.33
35 5 0.12
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.17
Consensus pattern (33 bp):
AAAATCCAAAATCCCTAAAATCCAAAACTCCCC
Found at i:7862053 original size:15 final size:16
Alignment explanation
Indices: 7861909--7862045 Score: 86
Period size: 16 Copynumber: 8.6 Consensus size: 16
7861899 AAACCCCATA
*
7861909 AAAATCCAAAATCTCT
1 AAAATCCAAAACCTCT
* * *
7861925 TAAATCCAAATCCCCT
1 AAAATCCAAAACCTCT
*
7861941 AAAATCCAAAACCCCT
1 AAAATCCAAAACCTCT
*
7861957 AAAATCCAAAACCTCCCC
1 AAAATCCAAAACCT--CT
7861975 AAAATCCAAAATCC-C-
1 AAAATCCAAAA-CCTCT
* ***
7861990 AAACTTTTAAA-CTCT
1 AAAATCCAAAACCTCT
* *
7862005 TAAA-CCTAAACCTTCT
1 AAAATCCAAAACC-TCT
*
7862021 -AAATCCAAAATCTCT
1 AAAATCCAAAACCTCT
7862036 AAAATCCAAA
1 AAAATCCAAA
7862046 CCCTTAAATC
Statistics
Matches: 94, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
13 1 0.01
14 5 0.05
15 16 0.17
16 58 0.62
18 12 0.13
19 2 0.02
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATCCAAAACCTCT
Found at i:7862088 original size:14 final size:15
Alignment explanation
Indices: 7862054--7862082 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7862044 AACCCTTAAA
7862054 TCAAAACTCCAAACC
1 TCAAAACTCCAAACC
7862069 TCAAAAC-CCAAACC
1 TCAAAACTCCAAACC
7862083 CTAAAATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.41, G:0.00, T:0.10
Consensus pattern (15 bp):
TCAAAACTCCAAACC
Found at i:7862197 original size:12 final size:13
Alignment explanation
Indices: 7862180--7862214 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
7862170 ACCTTCAAAA
7862180 CCTATACTCAAG-
1 CCTATACTCAAGC
7862192 CCTATACTCAAGC
1 CCTATACTCAAGC
7862205 CCT-TACTCAA
1 CCTATACTCAA
7862215 AACCTCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 19 0.86
13 3 0.14
ACGTcount: A:0.31, C:0.37, G:0.06, T:0.26
Consensus pattern (13 bp):
CCTATACTCAAGC
Found at i:7868448 original size:8 final size:8
Alignment explanation
Indices: 7868435--7868480 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
7868425 TGGGGCATAA
7868435 AAAAAAAC
1 AAAAAAAC
7868443 AAAAAAAC
1 AAAAAAAC
*
7868451 AAAACAAGC
1 AAAA-AAAC
*
7868460 AAAAAAAAA
1 -AAAAAAAC
7868469 AAAAAAAC
1 AAAAAAAC
7868477 AAAA
1 AAAA
7868481 GGGACATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 23 0.72
9 5 0.16
10 4 0.12
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:7870636 original size:23 final size:22
Alignment explanation
Indices: 7870609--7870736 Score: 107
Period size: 23 Copynumber: 5.7 Consensus size: 22
7870599 GTCAATTCTA
*
7870609 TAAGACCTCCGAGACATGATTTC
1 TAAGACCTCCG-GGCATGATTTC
* *
7870632 TAAGATCTCCGGGCATGATTCTA
1 TAAGACCTCCGGGCATGATT-TC
7870655 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* ** *
7870677 TAAGATCTTTGGGCA--ATTTTG
1 TAAGACCTCCGGGCATGA-TTTC
* * *
7870698 TAAAACCTTCGGGCATGATTCTA
1 TAAGACCTCCGGGCATGATT-TC
*
7870721 TAAGATCTCCGGGCAT
1 TAAGACCTCCGGGCAT
7870737 AAATTTGATT
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
20 1 0.01
21 15 0.18
22 23 0.27
23 45 0.54
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:7870938 original size:21 final size:22
Alignment explanation
Indices: 7870912--7870959 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
7870902 TATCCCAGTA
7870912 GATTC-TAAAACCTCCGAGCAT
1 GATTCGTAAAACCTCCGAGCAT
* *
7870933 GATTCTGTAAGACCTCCGGGCAT
1 GATTC-GTAAAACCTCCGAGCAT
7870956 GATT
1 GATT
7870960 TTTAAGACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 5 0.22
23 18 0.78
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (22 bp):
GATTCGTAAAACCTCCGAGCAT
Found at i:7870968 original size:22 final size:23
Alignment explanation
Indices: 7870921--7870974 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
7870911 AGATTCTAAA
*
7870921 ACCTCCGAGCATGATTCTGTAAG
1 ACCTCCGGGCATGATTCTGTAAG
*
7870944 ACCTCCGGGCATGATT-TTTAAG
1 ACCTCCGGGCATGATTCTGTAAG
*
7870966 ACCTTCGGG
1 ACCTCCGGG
7870975 TATAATTTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (23 bp):
ACCTCCGGGCATGATTCTGTAAG
Found at i:7870982 original size:22 final size:22
Alignment explanation
Indices: 7870921--7870982 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7870911 AGATTCTAAA
* * *
7870921 ACCTCCGAGCATGATTCTGTAAG
1 ACCTCCGGGCATAATT-TTTAAG
*
7870944 ACCTCCGGGCATGATTTTTAAG
1 ACCTCCGGGCATAATTTTTAAG
* *
7870966 ACCTTCGGGTATAATTT
1 ACCTCCGGGCATAATTT
7870983 CGATTCACGG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 19 0.56
23 15 0.44
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (22 bp):
ACCTCCGGGCATAATTTTTAAG
Found at i:7871075 original size:22 final size:23
Alignment explanation
Indices: 7871043--7871112 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 23
7871033 ATCCTAGTCA
*
7871043 ATTTTGTAAGACCTTCGGGCATG
1 ATTTTGTAAGACCTCCGGGCATG
7871066 ATTTT-TAAGACCTCCGGGCA--
1 ATTTTGTAAGACCTCCGGGCATG
* * * *
7871086 ATTCTGTAAGATCTCCGAGCATA
1 ATTTTGTAAGACCTCCGGGCATG
7871109 ATTT
1 ATTT
7871113 CAATTCACGG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 4 0.10
21 13 0.33
22 14 0.36
23 8 0.21
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (23 bp):
ATTTTGTAAGACCTCCGGGCATG
Found at i:7871208 original size:22 final size:23
Alignment explanation
Indices: 7871172--7871239 Score: 104
Period size: 22 Copynumber: 3.0 Consensus size: 23
7871162 TTATCCCAAT
*
7871172 TGATTCTGTAAGACCTTTGGGCA
1 TGATTCTCTAAGACCTTTGGGCA
*
7871195 TGATTCT-TAAGACCTATGGGCA
1 TGATTCTCTAAGACCTTTGGGCA
7871217 TGATT-TCTAAGACCTTTGGGCA
1 TGATTCTCTAAGACCTTTGGGCA
7871239 T
1 T
7871240 AAATTCGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
21 1 0.02
22 34 0.81
23 7 0.17
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (23 bp):
TGATTCTCTAAGACCTTTGGGCA
Found at i:7871281 original size:131 final size:130
Alignment explanation
Indices: 7870802--7871281 Score: 461
Period size: 131 Copynumber: 3.7 Consensus size: 130
7870792 TATCTCAATC
* * *
7870802 GATTCTGTAAGACCTCCGAGTATGATTTTGAAGACCTCCGGGCATAAATTCGATTCGC-GATGTT
1 GATTCT-TAAGACCTCCGGGCATGATTTT-AAGACCTCCGGGCATAAATTCGATTCACAG-TGTT
* * * * *
7870866 ATCTTGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAGTAGATTC--TAAAACCTCCGA
63 ATCTCGATCGATTCTTTAT-TTTTGACTTGCGATGTTATCCCAGTAGATTCTGTAAGACCTTCGG
7870929 GCAT
127 GCAT
* * * * *
7870933 GATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTTCGGGTATAATTTCGATTCACGGTGTTG
1 GATTCT-TAAGACCTCCGGGCATGA-TTTTAAGACCTCCGGGCATAAATTCGATTCACAGTGTTA
* * * * *
7870998 TCCCGATCGATTGTTTATTTTTAACTTGCGATGTTATCCTAGTCA-ATTTTGTAAGACCTTCGGG
64 TCTCGATCGATTCTTTATTTTTGACTTGCGATGTTATCCCAGT-AGATTCTGTAAGACCTTCGGG
7871062 CAT
128 CAT
* * * * * *
7871065 GATTTTTAAGACCTCCGGGCA--ATTCTGTAAGATCTCCGAGCATAATTTCAATTCACGGTGTTA
1 GATTCTTAAGACCTCCGGGCATGATT-T-TAAGACCTCCGGGCATAAATTCGATTCACAGTGTTA
* * * * *
7871128 TCTCGATCAATT-TCTTATTTTTTGACTTGTGATGTTATCCCAATTGATTCTGTAAGACCTTTGG
64 TCTCGATCGATTCT-TTA-TTTTTGACTTGCGATGTTATCCCAGTAGATTCTGTAAGACCTTCGG
7871192 GCAT
127 GCAT
** ** * * *
7871196 GATTCTTAAGACCTATGGGCATGATTTCTAAGACCTTTGGGCATAAATTCGATTCGCACTATTAT
1 GATTCTTAAGACCTCCGGGCATGATTT-TAAGACCTCCGGGCATAAATTCGATTCACAGTGTTAT
* *
7871261 CTCAATCGATTCATTATTTTT
65 CTCGATCGATTCTTTATTTTT
7871282 CAACTTATGG
Statistics
Matches: 286, Mismatches: 50, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
128 2 0.01
129 3 0.01
130 68 0.24
131 147 0.51
132 63 0.22
133 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (130 bp):
GATTCTTAAGACCTCCGGGCATGATTTTAAGACCTCCGGGCATAAATTCGATTCACAGTGTTATC
TCGATCGATTCTTTATTTTTGACTTGCGATGTTATCCCAGTAGATTCTGTAAGACCTTCGGGCAT
Found at i:7871461 original size:21 final size:20
Alignment explanation
Indices: 7871432--7871481 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
7871422 TTGTCCCAAA
* *
7871432 AAAATAAAAATAATA-ATAC
1 AAAATAAAAAAAAAATATAC
7871451 AAAATACAAAAAAAAATATAC
1 AAAATA-AAAAAAAAATATAC
7871472 AAAATAAAAA
1 AAAATAAAAA
7871482 GAAGAAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 11 0.41
21 10 0.37
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAATAAAAAAAAAATATAC
Found at i:7872910 original size:33 final size:34
Alignment explanation
Indices: 7872873--7872960 Score: 121
Period size: 32 Copynumber: 2.7 Consensus size: 34
7872863 CCAAGTTTTT
* *
7872873 AAAACCCCCTAAAATTCAAAATCCCTT-CAATCC
1 AAAACCCCCTAAAATCCAAAATCCCTTAAAATCC
7872906 AAAA-CCCCTAAAATCCAAAA-CCCTTAAAATCC
1 AAAACCCCCTAAAATCCAAAATCCCTTAAAATCC
7872938 AAAACCTCCC-AAAATCCAAAATC
1 AAAACC-CCCTAAAATCCAAAATC
7872961 TCAAACTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
31 5 0.10
32 24 0.49
33 16 0.33
34 4 0.08
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.17
Consensus pattern (34 bp):
AAAACCCCCTAAAATCCAAAATCCCTTAAAATCC
Found at i:7872953 original size:17 final size:16
Alignment explanation
Indices: 7872873--7872958 Score: 100
Period size: 16 Copynumber: 5.2 Consensus size: 16
7872863 CCAAGTTTTT
*
7872873 AAAACCCCCTAAAATTC
1 AAAA-CCCCTAAAATCC
* **
7872890 AAAATCCCTTCAATCC
1 AAAACCCCTAAAATCC
7872906 AAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
*
7872922 AAAACCCTTAAAATCC
1 AAAACCCCTAAAATCC
*
7872938 AAAACCTCCCAAAATCC
1 AAAACC-CCTAAAATCC
7872955 AAAA
1 AAAA
7872959 TCTCAAACTT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
16 42 0.72
17 16 0.28
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:7873012 original size:14 final size:14
Alignment explanation
Indices: 7872971--7873017 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
7872961 TCAAACTTTT
*
7872971 AAACTCTTAAA-CC
1 AAACCCTTAAATCC
*
7872984 TAAACCCCCTAAATCC
1 -AAA-CCCTTAAATCC
7873000 AAACCCTTAAATCC
1 AAACCCTTAAATCC
7873014 AAAC
1 AAAC
7873018 TCCAAACCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 17 0.61
15 9 0.32
16 2 0.07
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACCCTTAAATCC
Found at i:7874076 original size:31 final size:31
Alignment explanation
Indices: 7874038--7874099 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
7874028 TTCAAGATCA
*
7874038 AGCAAGTCGTAAGTATAATAAAATCTTACTT
1 AGCAAGTCGTAAGTACAATAAAATCTTACTT
7874069 AGCAAGTCGTAAGTACAATAAAATCTTACTT
1 AGCAAGTCGTAAGTACAATAAAATCTTACTT
7874100 TGGATTACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.31
Consensus pattern (31 bp):
AGCAAGTCGTAAGTACAATAAAATCTTACTT
Found at i:7880525 original size:13 final size:13
Alignment explanation
Indices: 7880509--7880659 Score: 57
Period size: 13 Copynumber: 11.2 Consensus size: 13
7880499 AGTATAATTT
7880509 TATTTATAAATAA
1 TATTTATAAATAA
*
7880522 TATTACATAAATAAA
1 TATT-TATAAAT-AA
*
7880537 TAATATTATATTATAA
1 T-AT-TTATA-AATAA
*
7880553 TTTATTAATAAATAA
1 --TATTTATAAATAA
7880568 TA--TAT-AAT-A
1 TATTTATAAATAA
*
7880577 TATTAATAAATAA
1 TATTTATAAATAA
7880590 TATACTCT-TAATATAA
1 TAT--T-TATAA-ATAA
*
7880606 TATATTAATAAATAT
1 TAT-TT-ATAAATAA
*
7880621 TATTAATAAATAA
1 TATTTATAAATAA
7880634 TA-TTAT-AAT-A
1 TATTTATAAATAA
**
7880644 TATCCATAAATAA
1 TATTTATAAATAA
7880657 TAT
1 TAT
7880660 AAAGAATAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 40
0.65 0.09 0.25
Matches are distributed among these distances:
9 3 0.03
10 6 0.06
11 9 0.09
12 9 0.09
13 23 0.22
14 8 0.08
15 18 0.17
16 21 0.20
17 5 0.05
18 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (13 bp):
TATTTATAAATAA
Found at i:7880576 original size:53 final size:51
Alignment explanation
Indices: 7880518--7880644 Score: 129
Period size: 53 Copynumber: 2.5 Consensus size: 51
7880508 TTATTTATAA
*
7880518 ATAATATTACATAAATAA-ATAATATTATATTATAATTTATTAATAAATAATAT
1 ATAATATTA-ATAAATAATATAATATTA-A-TATAATATATTAATAAATAATAT
* * *
7880571 ATAATATATTAATAAATAATATACTCTTAATATAATATATTAATAAATATTAT
1 AT-A-ATATTAATAAATAATATAATATTAATATAATATATTAATAAATAATAT
*
7880624 -TAATA--AAT-AATATTATAATAT
1 ATAATATTAATAAATAATATAATAT
7880645 ATCCATAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
47 10 0.16
48 3 0.05
50 3 0.05
51 1 0.02
52 1 0.02
53 23 0.36
54 10 0.16
55 13 0.20
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (51 bp):
ATAATATTAATAAATAATATAATATTAATATAATATATTAATAAATAATAT
Found at i:7880620 original size:50 final size:54
Alignment explanation
Indices: 7880513--7880616 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 54
7880503 TAATTTTATT
*
7880513 TATAAATAATATTACATAAATAAATAATATTATATTATAATTTATTAATAAATAA
1 TATAAATAATATTACATAAATAAATAATATTATATTATAATATATTAAT-AATAA
* *
7880568 TATATAAT-ATATTA-ATAAATAATATACTCTTA-A-TATAATATATTAATAA
1 TATA-AATAATATTACATAAATAA-ATAATATTATATTATAATATATTAATAA
7880617 ATATTATTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
52 2 0.05
53 13 0.30
54 9 0.20
55 17 0.39
56 3 0.07
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (54 bp):
TATAAATAATATTACATAAATAAATAATATTATATTATAATATATTAATAATAA
Found at i:7880761 original size:16 final size:16
Alignment explanation
Indices: 7880688--7880810 Score: 57
Period size: 15 Copynumber: 7.8 Consensus size: 16
7880678 TATTTTAAGT
7880688 ATTTTT-ATATTAACATA
1 ATTTTTAATATT-A-ATA
*
7880705 ATATTTTAGTATTAAATA
1 AT-TTTTAATATT-AATA
* * *
7880723 TTATTATTAAAATATAATG
1 --ATTTTTAATAT-TAATA
7880742 ATTTTTAATATTAATA
1 ATTTTTAATATTAATA
*
7880758 A-TTTTAATAAT-A-A
1 ATTTTTAATATTAATA
7880771 ATTATTTAA-A-T-AT-
1 ATT-TTTAATATTAATA
*
7880784 A-TTTTAATAATAATA
1 ATTTTTAATATTAATA
7880799 ATTTTTAATATT
1 ATTTTTAATATT
7880811 TTAATAATTA
Statistics
Matches: 83, Mismatches: 10, Indels: 27
0.69 0.08 0.22
Matches are distributed among these distances:
11 5 0.06
12 2 0.02
13 6 0.07
14 5 0.06
15 15 0.18
16 14 0.17
17 11 0.13
18 7 0.08
19 15 0.18
20 3 0.04
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.52
Consensus pattern (16 bp):
ATTTTTAATATTAATA
Found at i:7880764 original size:9 final size:9
Alignment explanation
Indices: 7880747--7880819 Score: 50
Period size: 9 Copynumber: 8.6 Consensus size: 9
7880737 TAATGATTTT
*
7880747 TAATATTAA
1 TAATTTTAA
7880756 TAATTTTAA
1 TAATTTTAA
*
7880765 TAA--TAAA
1 TAATTTTAA
* *
7880772 TTATTTAAA
1 TAATTTTAA
7880781 TATATTTTAA
1 TA-ATTTTAA
7880791 TAA---TAA
1 TAATTTTAA
7880797 TAATTTTTAA
1 TAA-TTTTAA
7880807 T-ATTTTAA
1 TAATTTTAA
7880815 TAATT
1 TAATT
7880820 ATATTAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
6 6 0.12
7 5 0.10
8 7 0.14
9 21 0.41
10 12 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TAATTTTAA
Found at i:7880790 original size:26 final size:25
Alignment explanation
Indices: 7880754--7880845 Score: 82
Period size: 25 Copynumber: 3.7 Consensus size: 25
7880744 TTTTAATATT
7880754 AATA-ATTTTAATAATAAATTATTTA
1 AATATATTTTAATAAT-AATTATTTA
* *
7880779 AATATATTTTAATAATAATAATTTT
1 AATATATTTTAATAATAATTATTTA
* * *
7880804 TA-ATATTTTAATAATTA-TATTAA
1 AATATATTTTAATAATAATTATTTA
* *
7880827 AATTATTTTTTAAAAATAA
1 AA-TATATTTTAATAATAA
7880846 ATTTTTCAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
23 4 0.08
24 14 0.26
25 24 0.45
26 11 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
AATATATTTTAATAATAATTATTTA
Found at i:7880830 original size:57 final size:60
Alignment explanation
Indices: 7880716--7880834 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 60
7880706 TATTTTAGTA
* *
7880716 TTAAATATTATTATTAAAATATAATGATTTTTAATATTAATAATTTTAATAATAAATTAT
1 TTAAATATTATTATTAAAATATAATAATTTTTAATATTAATAATTATAATAATAAATTAT
* *
7880776 TTAAATA-TATT-TTAATA-ATAATAATTTTTAATATTTTAATAATTAT-ATTA-AAATTAT
1 TTAAATATTATTATTAAAATATAATAATTTTTAATA--TTAATAATTATAATAATAAATTAT
7880833 TT
1 TT
7880835 TTTAAAAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
57 24 0.45
58 8 0.15
59 14 0.26
60 7 0.13
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (60 bp):
TTAAATATTATTATTAAAATATAATAATTTTTAATATTAATAATTATAATAATAAATTAT
Found at i:7882685 original size:17 final size:17
Alignment explanation
Indices: 7882654--7882692 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7882644 ATATAGGATG
*
7882654 ATATT-ATATTATAATC
1 ATATTCATAATATAATC
7882670 ATATTCATAATATAATC
1 ATATTCATAATATAATC
*
7882687 TTATTC
1 ATATTC
7882693 TATCCTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATTCATAATATAATC
Found at i:7883979 original size:6 final size:6
Alignment explanation
Indices: 7883970--7883997 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7883960 CTTTTTCCAT
7883970 CTTTTC CTTTTC CTTTTC CTTTTC CTTT
1 CTTTTC CTTTTC CTTTTC CTTTTC CTTT
7883998 CTTCTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
CTTTTC
Found at i:7884000 original size:28 final size:27
Alignment explanation
Indices: 7883956--7884013 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
7883946 TTTTGTTTGA
*
7883956 TTTTCTTTTTCCATCTT-TTCCTTTTCC
1 TTTTCCTTTTCCATCTTCTT-CTTTTCC
* *
7883983 TTTTCCTTTTCCTTTCTTCTTCTTTTGC
1 TTTTCCTTTTCC-ATCTTCTTCTTTTCC
7884011 TTT
1 TTT
7884014 CAATTTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 11 0.42
28 13 0.50
29 2 0.08
ACGTcount: A:0.02, C:0.28, G:0.02, T:0.69
Consensus pattern (27 bp):
TTTTCCTTTTCCATCTTCTTCTTTTCC
Found at i:7889558 original size:30 final size:30
Alignment explanation
Indices: 7889522--7889579 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7889512 AATGCCTCGT
* * *
7889522 AGTTAAATTTGGTCAAACTTAGTCAAACAA
1 AGTTAAATTTAGTCAAAATTAATCAAACAA
7889552 AGTTAAATTTAGTCAAAATTAATCAAAC
1 AGTTAAATTTAGTCAAAATTAATCAAAC
7889580 TTAATCGGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (30 bp):
AGTTAAATTTAGTCAAAATTAATCAAACAA
Found at i:7891713 original size:19 final size:19
Alignment explanation
Indices: 7891660--7891748 Score: 81
Period size: 20 Copynumber: 4.6 Consensus size: 19
7891650 CCCTTAAGCC
*
7891660 CTAAACTAAACCCCAAACT
1 CTAAACAAAACCCCAAACT
*
7891679 TTAAACCAAAACCCCAAACT
1 CTAAA-CAAAACCCCAAACT
*
7891699 CTAAACAAAATCCCAAAC-
1 CTAAACAAAACCCCAAACT
* * * *
7891717 CTTGAACCAAAATCGCAAACC
1 C-T-AAACAAAACCCCAAACT
7891738 CTAAACAAAAC
1 CTAAACAAAAC
7891749 ACCACCTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.02
19 24 0.41
20 32 0.55
21 1 0.02
ACGTcount: A:0.51, C:0.34, G:0.02, T:0.13
Consensus pattern (19 bp):
CTAAACAAAACCCCAAACT
Found at i:7891714 original size:39 final size:39
Alignment explanation
Indices: 7891658--7891748 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 39
7891648 AACCCTTAAG
* *
7891658 CCCTAAACTAAACCCCAAACTTTAAACCAAAACCCCAAA
1 CCCTAAACAAAACCCCAAACCTTAAACCAAAACCCCAAA
* * * * *
7891697 CTCTAAACAAAATCCCAAACCTTGAACCAAAATCGCAAA
1 CCCTAAACAAAACCCCAAACCTTAAACCAAAACCCCAAA
7891736 CCCTAAACAAAAC
1 CCCTAAACAAAAC
7891749 ACCACCTAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.49, C:0.35, G:0.02, T:0.13
Consensus pattern (39 bp):
CCCTAAACAAAACCCCAAACCTTAAACCAAAACCCCAAA
Found at i:7893142 original size:162 final size:162
Alignment explanation
Indices: 7892735--7893719 Score: 913
Period size: 162 Copynumber: 6.1 Consensus size: 162
7892725 AAACATATGG
* * ** * *
7892735 TTTATGTGTTTTTAGGATTTTTTTTATCATAAAAAGGC-AAAAATGTAAATTTGTTACTATATTT
1 TTTATGTGTTTTTAGGACTTTTTATGCCGT-AAAAGGCTAAAAAAGTAAATTTGTTACTATATTT
* * * * * * * *
7892799 CTATTTCAATAGCTTAAATAGCTCAAATCCATAATATTAAACTTGTCTAAATGGTTAAACTTGGT
65 CTATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTGTCCAAATGGTTAAACTTGGT
* * * *
7892864 TGTCATGCTTGGTATGTGTA--AAAATATTAT-A
130 TATCATGCTTGATATGT-TATGAATATATAATGA
* * * * *
7892895 GTTTATATGTTTTTAGGACTTTTTGTGTCGTAAAAGGATAAAAATA-TAAATTTGCTACTATATT
1 -TTTATGTGTTTTTAGGACTTTTTATGCCGTAAAAGGCTAAAAA-AGTAAATTTGTTACTATATT
* *
7892959 T-TCATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTATCCAAATAGTTAAACTTG
64 TCT-ATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTGTCCAAATGGTTAAACTTG
* * * * **
7893023 GTTGTTATGCTTGACATGTAATGAATATATAACAA
128 GTTATCATGCTTGATATGTTATGAATATATAATGA
* *
7893058 TTTATGTGTTTTTAGGACATTTTATGCCG-AAAAGCGCTAAAAAAGTAAAGTTGTTACTATATTT
1 TTTATGTGTTTTTAGGACTTTTTATGCCGTAAAAG-GCTAAAAAAGTAAATTTGTTACTATATTT
* ** * * * * * *
7893122 CTATTTTAATAACTTAGATAACTTGAATATATGATATTAAATTTTTCTAAATGGTTGAACTTGGC
65 CTATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTGTCCAAATGGTTAAACTTGGT
* * * * *
7893187 TA-CCTCGCTTGATATGGT-TGAAAATATTACGA
130 TATCAT-GCTTGATATGTTATGAATATATAATGA
* * * * * *
7893219 TTTATGTGTTTTTAGGACTTTTTGTGCCATAAAAATG-TAAAAATGGAAATTTGTTGCTATATTT
1 TTTATGTGTTTTTAGGACTTTTTATGCCGT-AAAAGGCTAAAAAAGTAAATTTGTTACTATATTT
* ** * * * * * *
7893283 CTATTTTAACGACTTAGATAGTTCTAATACATGATATTAAACTTGTTCGAATTGTTGAACTTGGC
65 CTATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTGTCCAAATGGTTAAACTTGGT
*
7893348 TATCATGCTTGATATGTTATGAATATATAATGG
130 TATCATGCTTGATATGTTATGAATATATAATGA
* * *
7893381 TTTATATGTTTTTAAGACTTTTTATGCCGTAAAAGGGC-AAAAACA-TAAATTTGCTACTATATT
1 TTTATGTGTTTTTAGGACTTTTTATGCCGTAAAA-GGCTAAAAA-AGTAAATTTGTTACTATATT
* * * ** *
7893444 TTTGTTTTAACAACTTAGGTAACTCAAATACATGATATTAAAC-TGATTTGAAA-GGTTGAACTT
64 TCTATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTG--TCCAAATGGTTAAACTT
* ** * *
7893507 GGCTAAAATGCTTGATATGTTACGAACATATAATGA
127 GGTTATCATGCTTGATATGTTATGAATATATAATGA
* * * *
7893543 TTTATTTGTTTTTAGGACTTTTTATGTCGTAAAACGG-TAAAAAAGTAAATTTATCT-CTATTTT
1 TTTATGTGTTTTTAGGACTTTTTATGCCGTAAAA-GGCTAAAAAAGTAAATTTGT-TACTATATT
* * * * ** * * *
7893606 TTTGTTTTAACAGCTTAGATGACTTGAATACATGATAATAAACTTGTCCAAATAGTTAAACTTAG
64 TCTATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTGTCCAAATGGTTAAACTTGG
*
7893671 TTACCATGCTTGATATGTTATGAATATATAATGA
129 TTATCATGCTTGATATGTTATGAATATATAATGA
7893705 TTTATGTGTTTTTAG
1 TTTATGTGTTTTTAG
7893720 AGTGCGTTTG
Statistics
Matches: 674, Mismatches: 126, Indels: 47
0.80 0.15 0.06
Matches are distributed among these distances:
160 8 0.01
161 258 0.38
162 395 0.59
163 13 0.02
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (162 bp):
TTTATGTGTTTTTAGGACTTTTTATGCCGTAAAAGGCTAAAAAAGTAAATTTGTTACTATATTTC
TATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTGTCCAAATGGTTAAACTTGGTT
ATCATGCTTGATATGTTATGAATATATAATGA
Found at i:7893323 original size:323 final size:317
Alignment explanation
Indices: 7892766--7893719 Score: 1013
Period size: 323 Copynumber: 3.0 Consensus size: 317
7892756 TTTTATCATA
* * * * * *
7892766 AAAAGGCAAAAATGTAAATTTGTTACTATATTTCTATTTCAATAGCTTAAATAGCTCAAATCCAT
1 AAAAGGCAAAAAAGTAAATTTGTTACTATATTTCTATTTTAATAACTTAGATAACTCAAATACAT
* * * * * ** * * *
7892831 AATATTAAACTTGTCTAAATGGTTAAACTTGGTTGTCATGCTTGGTATGTGTAAAAATATTATAG
66 GATATTAAATTTTTCTAAATGGTTGAACTTGGCTAACATGCTTGATATGT-TGAAAATATTAGA-
* *
7892896 TTTATATGTTTTTAGGACTTTTTGTGTCGT-AAAAGGATAAAAATATAAATTTGCTACTATATTT
129 TTTATATGTTTTTAGGACTTTTTGTGTCGTAAAAAGG-TAAAAATGTAAATTTG-TTCTATATTT
* *
7892960 TCATTTTAACAACTTAGATAACTCAAATACATGATATTAAACTTATCCAAATAGTTAAACTTGGT
192 T-ATTTTAAC-ACTTAGATAATTCAAATACATGATATTAAACTTGTCCAAATAGTTAAACTTGGT
* * * * **
7893025 TGTTATGCTTGACATGTAATGAATATATAACAATTTATGTGTTTTTAGGACATTTTATGCCG-
255 TATCATGCTTGATATGTTATGAATATATAATGATTTATGTGTTTTTAGGACATTTTATGCCGT
* ** *
7893087 AAAAGCGCTAAAAAAGTAAAGTTGTTACTATATTTCTATTTTAATAACTTAGATAACTTGAATAT
1 AAAAG-GC-AAAAAAGTAAATTTGTTACTATATTTCTATTTTAATAACTTAGATAACTCAAATAC
*
7893152 ATGATATTAAATTTTTCTAAATGGTTGAACTTGGCT-ACCTCGCTTGATATGGTTGAAAATATTA
64 ATGATATTAAATTTTTCTAAATGGTTGAACTTGGCTAACAT-GCTTGATAT-GTTGAAAATATTA
* * * * *
7893216 CGATTTATGTGTTTTTAGGACTTTTTGTGCCATAAAAATGTAAAAATGGAAATTTGTTGCTATAT
127 -GATTTATATGTTTTTAGGACTTTTTGTGTCGTAAAAAGGTAAAAATGTAAATTTGTT-CTATAT
* * * * * *
7893281 TTCTATTTTAACGACTTAGATAGTTCTAATACATGATATTAAACTTGTTCGAATTGTTGAACTTG
190 TT-TATTTTAAC-ACTTAGATAATTCAAATACATGATATTAAACTTGTCCAAATAGTTAAACTTG
* * * * *
7893346 GCTATCATGCTTGATATGTTATGAATATATAATGGTTTATATGTTTTTAAGACTTTTTATGCCGT
253 GTTATCATGCTTGATATGTTATGAATATATAATGATTTATGTGTTTTTAGGACATTTTATGCCGT
* * * * *
7893411 AAAAGGGCAAAAACA-TAAATTTGCTACTATATTTTTGTTTTAACAACTTAGGTAACTCAAATAC
1 AAAA-GGCAAAAA-AGTAAATTTGTTACTATATTTCTATTTTAATAACTTAGATAACTCAAATAC
* * * *
7893475 ATGATATTAAACTGATTT-GAAA-GGTTGAACTTGGCTAAAATGCTTGATATGTTACGAACATAT
64 ATGATATTAAA-T-TTTTCTAAATGGTTGAACTTGGCTAACATGCTTGATATGTT--GAAAATAT
* * * * * *
7893538 AATGATTTATTTGTTTTTAGGACTTTTTATGTCGTAAAACGGTAAAAAAGTAAATTTATCTCTAT
125 TA-GATTTATATGTTTTTAGGACTTTTTGTGTCGTAAAAAGGTAAAAATGTAAATTTGT-TCTA-
* * * * *
7893603 TTTTTTGTTTTAACAGCTTAGATGACTT-GAATACATGATAATAAACTTGTCCAAATAGTTAAAC
187 TATTTTATTTTAACA-CTTAGAT-AATTCAAATACATGATATTAAACTTGTCCAAATAGTTAAAC
* *
7893667 TTAGTTACCATGCTTGATATGTTATGAATATATAATGATTTATGTGTTTTTAG
250 TTGGTTATCATGCTTGATATGTTATGAATATATAATGATTTATGTGTTTTTAG
7893720 AGTGCGTTTG
Statistics
Matches: 526, Mismatches: 87, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
321 5 0.01
322 8 0.02
323 329 0.63
324 172 0.33
325 12 0.02
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (317 bp):
AAAAGGCAAAAAAGTAAATTTGTTACTATATTTCTATTTTAATAACTTAGATAACTCAAATACAT
GATATTAAATTTTTCTAAATGGTTGAACTTGGCTAACATGCTTGATATGTTGAAAATATTAGATT
TATATGTTTTTAGGACTTTTTGTGTCGTAAAAAGGTAAAAATGTAAATTTGTTCTATATTTTATT
TTAACACTTAGATAATTCAAATACATGATATTAAACTTGTCCAAATAGTTAAACTTGGTTATCAT
GCTTGATATGTTATGAATATATAATGATTTATGTGTTTTTAGGACATTTTATGCCGT
Found at i:7894778 original size:15 final size:16
Alignment explanation
Indices: 7894748--7894788 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
7894738 AATGAAAGAA
*
7894748 AAGAAAGAGAATGATG
1 AAGAAAAAGAATGATG
7894764 -AGAAGAAAGAA-GATG
1 AAGAA-AAAGAATGATG
7894779 AAGAAAAAGA
1 AAGAAAAAGA
7894789 GGAGGGCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.07
Consensus pattern (16 bp):
AAGAAAAAGAATGATG
Found at i:7906038 original size:27 final size:27
Alignment explanation
Indices: 7906003--7906055 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7905993 TAAGGTACTT
* * *
7906003 ATTCTTTTCCCTCTTGGGGGATCATAG
1 ATTCATTTCCCTATTAGGGGATCATAG
7906030 ATTCATTTCCCTATTAGGGGATCATA
1 ATTCATTTCCCTATTAGGGGATCATA
7906056 AACCTCTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTCATTTCCCTATTAGGGGATCATAG
Found at i:7906065 original size:27 final size:27
Alignment explanation
Indices: 7906008--7906068 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
7905998 TACTTATTCT
* * * *
7906008 TTTCCCTCTTGGGGGATCATAGATTCA
1 TTTCCCTATTAGGGGATCATAAACTCA
7906035 TTTCCCTATTAGGGGATCATAAACCTC-
1 TTTCCCTATTAGGGGATCATAAA-CTCA
7906062 TTTCCCT
1 TTTCCCT
7906069 TTTTGCAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (27 bp):
TTTCCCTATTAGGGGATCATAAACTCA
Found at i:7910260 original size:19 final size:19
Alignment explanation
Indices: 7910236--7910272 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7910226 TTGAAAACTC
7910236 ATTTGAAAAGCTTTTTTTT
1 ATTTGAAAAGCTTTTTTTT
*
7910255 ATTTGAAAAGGTTTTTTT
1 ATTTGAAAAGCTTTTTTT
7910273 ATATATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.14, T:0.57
Consensus pattern (19 bp):
ATTTGAAAAGCTTTTTTTT
Found at i:7910413 original size:14 final size:14
Alignment explanation
Indices: 7910393--7910424 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
7910383 GAAAAAGAGC
7910393 TAAAAAAATA-AAA
1 TAAAAAAATAGAAA
7910406 TAAAAAAATAGAAA
1 TAAAAAAATAGAAA
7910420 TAAAA
1 TAAAA
7910425 TCGAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (14 bp):
TAAAAAAATAGAAA
Found at i:7911351 original size:37 final size:37
Alignment explanation
Indices: 7911295--7911451 Score: 93
Period size: 37 Copynumber: 4.5 Consensus size: 37
7911285 TAGAAATAGA
* *
7911295 AATAAAAATA-TAAT-ATAATATAATA-ATATGATAAT
1 AATAATAATACTAATAATAATATAATACA-ATAATAAT
**
7911330 AATAATAATACTAATAATAATATGGTACAATAATAAT
1 AATAATAATACTAATAATAATATAATACAATAATAAT
* * *
7911367 ATTAATAATGCT-ATAATAAT-T--TACAATAGT-AT
1 AATAATAATACTAATAATAATATAATACAATAATAAT
* * *
7911399 ACCATAATATTA-T-ATTATAATAT-ATACTATAATAAT
1 A--ATAATAATACTAATAATAATATAATACAATAATAAT
* * *
7911435 AACAAAAATATTAATAA
1 AATAATAATACTAATAA
7911452 CAAAAGAAAT
Statistics
Matches: 95, Mismatches: 17, Indels: 19
0.73 0.13 0.15
Matches are distributed among these distances:
32 3 0.03
33 16 0.17
34 13 0.14
35 18 0.19
36 18 0.19
37 26 0.27
38 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (37 bp):
AATAATAATACTAATAATAATATAATACAATAATAAT
Found at i:7911367 original size:3 final size:3
Alignment explanation
Indices: 7911295--7911351 Score: 59
Period size: 3 Copynumber: 20.3 Consensus size: 3
7911285 TAGAAATAGA
* *
7911295 AAT AAA AAT -AT AAT -AT AAT -AT AAT AAT -AT GAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
7911339 ACT AAT AAT AAT A
1 AAT AAT AAT AAT A
7911352 TGGTACAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
2 8 0.18
3 37 0.82
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7912075 original size:119 final size:119
Alignment explanation
Indices: 7911699--7912120 Score: 495
Period size: 121 Copynumber: 3.5 Consensus size: 119
7911689 TCAAGGTTGA
* * * * * *
7911699 AAATGACTGGGACAAAACCACGAATCATAAGATATGATCTAGACTAAGCCAAGATCATGTGACCA
1 AAATGATTGGGACAAAACCATGAATCATAAGAAATGATCTAGACTAAGCCAAAATCAGGTGACCG
* * * ** *
7911764 GGATGAAACCACAAGTAAAAAATGAAGCGACCAAGATTAAGTCAAGGTTAAAAAT
66 GGATGAAACCATAGGT-CAAAATGAAGCGACCAAGACCAAGTCAAGGTAAAAAAT
* * * * * * *
7911819 AGATGATTGGGACAAAACCATGAATCATAAGAAATGATATGGACTGAGCCAAGATCAGATGATCG
1 AAATGATTGGGACAAAACCATGAATCATAAGAAATGATCTAGACTAAGCCAAAATCAGGTGACCG
* * ** *
7911884 AGGATGAAACCAT-GAGTCAAAAATGAAGCGACTAGGACCAAGTTGAGGTCAAAAAT
66 -GGATGAAACCATAG-GTC-AAAATGAAGCGACCAAGACCAAGTCAAGGTAAAAAAT
* ** * * *
7911940 AAATGATTAGGATGAAACCAAGAATCATAAGAAATGATCTGGACTAAGCCAAAATTAGGTGACCG
1 AAATGATTGGGACAAAACCATGAATCATAAGAAATGATCTAGACTAAGCCAAAATCAGGTGACCG
* *
7912005 GGACGAAACCATAGGTCAAAATGAAGCGACCAAGACCGAGTCAAGGTAAAAAAT
66 GGATGAAACCATAGGTCAAAATGAAGCGACCAAGACCAAGTCAAGGTAAAAAAT
**
7912059 AAATGATTGGGATGAAACCATGAATCATAAGAAATGATCTAGACTAAGCCAAAATCAGGTGA
1 AAATGATTGGGACAAAACCATGAATCATAAGAAATGATCTAGACTAAGCCAAAATCAGGTGA
7912121 GTGAATAAAG
Statistics
Matches: 255, Mismatches: 43, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
119 89 0.35
120 68 0.27
121 98 0.38
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (119 bp):
AAATGATTGGGACAAAACCATGAATCATAAGAAATGATCTAGACTAAGCCAAAATCAGGTGACCG
GGATGAAACCATAGGTCAAAATGAAGCGACCAAGACCAAGTCAAGGTAAAAAAT
Found at i:7912940 original size:56 final size:56
Alignment explanation
Indices: 7912830--7912999 Score: 209
Period size: 56 Copynumber: 3.0 Consensus size: 56
7912820 TTGAACTTTC
* * * * *
7912830 TTTGGGTCCAAGCCACCCTTTTTGGGTTTTCAACTTAAACTCTTCTTTT-T-TTTTTG
1 TTTGGGTTCAAGCCACCC-TTTCGAGTTTTCAACTTGAACT-TTTTTTTCTCTTTTTG
* *
7912886 TTTGGGTTCAAGCCACCCTTTCGTGTATTCAACTTGAACTTTTTTTTCTCTTTTTG
1 TTTGGGTTCAAGCCACCCTTTCGAGTTTTCAACTTGAACTTTTTTTTCTCTTTTTG
*
7912942 TTTGGGTTCAAGCCACCTTTTCGAGTTTTCAACTTGAACTTTTCTTTTTTCTCTTTTT
1 TTTGGGTTCAAGCCACCCTTTCGAGTTTTCAACTTGAAC--TT-TTTTTTCTCTTTTT
7913000 TTGTTGCTTT
Statistics
Matches: 100, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
54 6 0.06
55 19 0.19
56 59 0.59
58 2 0.02
59 14 0.14
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.51
Consensus pattern (56 bp):
TTTGGGTTCAAGCCACCCTTTCGAGTTTTCAACTTGAACTTTTTTTTCTCTTTTTG
Found at i:7919894 original size:14 final size:15
Alignment explanation
Indices: 7919875--7919908 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7919865 GGTGAGGTAA
7919875 TTTTCTC-TATTGCC
1 TTTTCTCTTATTGCC
*
7919889 TTTTCTCTTTTTGCC
1 TTTTCTCTTATTGCC
7919904 TTTTC
1 TTTTC
7919909 CAAGGCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.03, C:0.26, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTCTCTTATTGCC
Found at i:7922764 original size:39 final size:38
Alignment explanation
Indices: 7922708--7922831 Score: 131
Period size: 39 Copynumber: 3.2 Consensus size: 38
7922698 GTATATATAC
* * *
7922708 AATAAATAAATAGTTAAGCAAATATAAGCAATGAAGAAA
1 AATAAATGAATAATTAAGCAAGTATAAGCAATGAA-AAA
* ** *
7922747 AATAAATGAGTAATTAAGCAAGTATAAATAGTGAAAAGGA
1 AATAAATGAATAATTAAGCAAGTATAAGCAATGAAAA--A
* *
7922787 ACAAAAATGAATAATAAAGCAAGTATAAGCAATGAAAAA
1 A-ATAAATGAATAATTAAGCAAGTATAAGCAATGAAAAA
7922826 AATAAA
1 AATAAA
7922832 ATAATTTCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
38 6 0.09
39 30 0.44
40 2 0.03
41 30 0.44
ACGTcount: A:0.61, C:0.05, G:0.15, T:0.19
Consensus pattern (38 bp):
AATAAATGAATAATTAAGCAAGTATAAGCAATGAAAAA
Found at i:7922823 original size:41 final size:38
Alignment explanation
Indices: 7922723--7922833 Score: 114
Period size: 41 Copynumber: 2.8 Consensus size: 38
7922713 ATAAATAGTT
* * * *
7922723 AAGCAAATATAAGCAATGAAGAAAAATAAATGAGTAATT
1 AAGCAAGTATAAGCAATGAA-AAAAAAAAATGAATAATA
** *
7922762 AAGCAAGTATAAATAGTGAAAAGGAACAAAAATGAATAATA
1 AAGCAAGTATAAGCAATGAAAA--AA-AAAAATGAATAATA
7922803 AAGCAAGTATAAGCAATGAAAAAAATAAAAT
1 AAGCAAGTATAAGCAATGAAAAAAA-AAAAT
7922834 AATTTCAAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
38 3 0.05
39 23 0.40
40 2 0.03
41 30 0.52
ACGTcount: A:0.61, C:0.05, G:0.15, T:0.18
Consensus pattern (38 bp):
AAGCAAGTATAAGCAATGAAAAAAAAAAATGAATAATA
Found at i:7923543 original size:11 final size:11
Alignment explanation
Indices: 7923527--7923552 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7923517 GCTTAAAATA
7923527 TTTTTTTTAAT
1 TTTTTTTTAAT
7923538 TTTTTTTTAAT
1 TTTTTTTTAAT
7923549 TTTT
1 TTTT
7923553 GAAAACTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTTAAT
Found at i:7923596 original size:19 final size:18
Alignment explanation
Indices: 7923561--7923598 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7923551 TTGAAAACTC
7923561 ATTTGAAAAGATTTTTTT
1 ATTTGAAAAGATTTTTTT
*
7923579 ATTTGAAAAGGTTTTTTT
1 ATTTGAAAAGATTTTTTT
7923597 AT
1 AT
7923599 ATATATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (18 bp):
ATTTGAAAAGATTTTTTT
Found at i:7923722 original size:14 final size:13
Alignment explanation
Indices: 7923703--7923745 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
7923693 GTGAAAACTA
*
7923703 AAAAAATTAAAGCT
1 AAAAAATTAAA-AT
7923717 AAAAAA-TAAAAT
1 AAAAAATTAAAAT
*
7923729 AAAAAATAAAAAT
1 AAAAAATTAAAAT
7923742 AAAA
1 AAAA
7923746 TGAAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 7 0.27
13 13 0.50
14 6 0.23
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (13 bp):
AAAAAATTAAAAT
Found at i:7923731 original size:12 final size:13
Alignment explanation
Indices: 7923716--7923745 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7923706 AAATTAAAGC
7923716 TAAAAAAT-AAAA
1 TAAAAAATAAAAA
7923728 TAAAAAATAAAAA
1 TAAAAAATAAAAA
7923741 TAAAA
1 TAAAA
7923746 TGAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:7923739 original size:18 final size:19
Alignment explanation
Indices: 7923718--7923753 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
7923708 ATTAAAGCTA
7923718 AAAAATAAAAT-AAAAAAT
1 AAAAATAAAATGAAAAAAT
7923736 AAAAATAAAATGAAAAAA
1 AAAAATAAAATGAAAAAA
7923754 AGGAAACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (19 bp):
AAAAATAAAATGAAAAAAT
Found at i:7924685 original size:18 final size:20
Alignment explanation
Indices: 7924645--7924696 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
7924635 ATATGGTACA
*
7924645 ATAATAATATTAATAATACT
1 ATAATAATATTAACAATACT
*
7924665 ATAATAAT-TT-ACAATAGT
1 ATAATAATATTAACAATACT
7924683 ATACCATAATATTA
1 ATA--ATAATATTA
7924697 TATTATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 9 0.35
19 2 0.08
20 13 0.50
21 2 0.08
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (20 bp):
ATAATAATATTAACAATACT
Found at i:7924686 original size:23 final size:23
Alignment explanation
Indices: 7924645--7924721 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
7924635 ATATGGTACA
7924645 ATAATAATATT--AATA-ATACT
1 ATAATAATATTACAATATATACT
*
7924665 ATAATAAT-TTACAATAGTATACC
1 ATAATAATATTACAATA-TATACT
*
7924688 ATAATATTATATTATAATATATACT
1 ATAATA--ATATTACAATATATACT
7924713 ATAATAATA
1 ATAATAATA
7924722 ACAAAAATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
19 2 0.04
20 8 0.17
21 4 0.09
23 13 0.28
25 13 0.28
26 7 0.15
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.40
Consensus pattern (23 bp):
ATAATAATATTACAATATATACT
Found at i:7926127 original size:63 final size:62
Alignment explanation
Indices: 7925976--7926179 Score: 155
Period size: 63 Copynumber: 3.3 Consensus size: 62
7925966 TTTATTGATT
** * *
7925976 AAAATGCCTTGAATAATCTTTTC-TAAAAATTTGAAGTGATTACTGAAGGCATTTTTAGCAA
1 AAAATGCCTTGAATAATCTCCTCATAAAAATATGAAGGGATTACTGAAGGCATTTTTAGCAA
** * * * * *
7926037 AAAACACTTTGAATAATC-CCATTATAAAAATGGAT-AAGGGATTACTGAAGGTATTTTTTGCAT
1 AAAATGCCTTGAATAATCTCC-TCATAAAAAT--ATGAAGGGATTACTGAAGGCATTTTTAGCAA
* * * * * *
7926100 ACAATGCCTTGAATAATCTCCTCATAAAAA-ATGTAGGCGATTATTAAAGACATTTTTTTGCAA
1 AAAATGCCTTGAATAATCTCCTCATAAAAATATGAAGG-GATTACTGAAGGCA-TTTTTAGCAA
* * *
7926163 GAAACGCCTTTAATAAT
1 AAAATGCCTTGAATAAT
7926180 TTTGCTAAAA
Statistics
Matches: 109, Mismatches: 26, Indels: 14
0.73 0.17 0.09
Matches are distributed among these distances:
60 2 0.02
61 19 0.17
62 17 0.16
63 68 0.62
64 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (62 bp):
AAAATGCCTTGAATAATCTCCTCATAAAAATATGAAGGGATTACTGAAGGCATTTTTAGCAA
Found at i:7946305 original size:28 final size:27
Alignment explanation
Indices: 7946269--7946321 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
7946259 ACATTTCGTA
*
7946269 AATTTATAAATCAATGTCAAAATATGTT
1 AATTCATAAATCAATG-CAAAATATGTT
*
7946297 AATTCATAAATCATTGCAAAATATG
1 AATTCATAAATCAATGCAAAATATG
7946322 CTACCATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (27 bp):
AATTCATAAATCAATGCAAAATATGTT
Found at i:7946450 original size:16 final size:15
Alignment explanation
Indices: 7946421--7946456 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
7946411 CTTTAAAATC
7946421 ATCATAAACATCATA
1 ATCATAAACATCATA
*
7946436 ATCATAAATCATCATT
1 ATCATAAA-CATCATA
7946452 ATCAT
1 ATCAT
7946457 TCTTTTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.33
Consensus pattern (15 bp):
ATCATAAACATCATA
Found at i:7960270 original size:18 final size:18
Alignment explanation
Indices: 7960247--7960283 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7960237 AGAGACCTTG
*
7960247 AATTTAGGTGGAATGACC
1 AATTTAGGCGGAATGACC
7960265 AATTTAGGCGGAATGACC
1 AATTTAGGCGGAATGACC
7960283 A
1 A
7960284 CTTCCTGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (18 bp):
AATTTAGGCGGAATGACC
Found at i:7962546 original size:18 final size:18
Alignment explanation
Indices: 7962508--7962544 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7962498 TGTGTGTGAA
7962508 TTTATTTGCTTTTTATTT
1 TTTATTTGCTTTTTATTT
7962526 TTTATTTG-TTTTT-TTT
1 TTTATTTGCTTTTTATTT
7962542 TTT
1 TTT
7962545 TTTTTTACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 5 0.26
18 8 0.42
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.84
Consensus pattern (18 bp):
TTTATTTGCTTTTTATTT
Found at i:7964864 original size:13 final size:13
Alignment explanation
Indices: 7964842--7964946 Score: 60
Period size: 12 Copynumber: 8.3 Consensus size: 13
7964832 GCCATCCTCA
*
7964842 ATTTTT-TTTTCT
1 ATTTTTATTTTGT
7964854 ATTTTTATTTT-T
1 ATTTTTATTTTGT
7964866 -TTTTGTATTTTTGT
1 ATTTT-TA-TTTTGT
*
7964880 -TTTGTATTTTGT
1 ATTTTTATTTTGT
* * *
7964892 ATTATT-CTTGGT
1 ATTTTTATTTTGT
*
7964904 ATTTTT-TCTTGT
1 ATTTTTATTTTGT
*
7964916 ATTTCATATTTTGT
1 ATTT-TTATTTTGT
* *
7964930 ATTTATATTTCGT
1 ATTTTTATTTTGT
7964943 ATTT
1 ATTT
7964947 ATTTATTTAT
Statistics
Matches: 74, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
11 4 0.05
12 31 0.42
13 26 0.35
14 13 0.18
ACGTcount: A:0.14, C:0.05, G:0.09, T:0.72
Consensus pattern (13 bp):
ATTTTTATTTTGT
Found at i:7964866 original size:17 final size:18
Alignment explanation
Indices: 7964842--7964882 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7964832 GCCATCCTCA
7964842 ATTTTTTTTTCTATTTTT
1 ATTTTTTTTTCTATTTTT
*
7964860 ATTTTTTTTTGTATTTTT
1 ATTTTTTTTTCTATTTTT
*
7964878 GTTTT
1 ATTTT
7964883 GTATTTTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.02, G:0.05, T:0.83
Consensus pattern (18 bp):
ATTTTTTTTTCTATTTTT
Found at i:7964874 original size:12 final size:13
Alignment explanation
Indices: 7964855--7964889 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7964845 TTTTTTTCTA
7964855 TTTT-TATTTTT-
1 TTTTGTATTTTTG
7964866 TTTTGTATTTTTG
1 TTTTGTATTTTTG
7964879 TTTTGTATTTT
1 TTTTGTATTTT
7964890 GTATTATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 4 0.18
12 7 0.32
13 11 0.50
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.83
Consensus pattern (13 bp):
TTTTGTATTTTTG
Found at i:7964889 original size:31 final size:31
Alignment explanation
Indices: 7964842--7964919 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
7964832 GCCATCCTCA
* * * *
7964842 ATTTTTTTTTCTATTTT-TATTTTTTTTTGT
1 ATTTTTTTTTGTATTTTGTATTATTCTTGGT
7964872 ATTTTTGTTTTGTATTTTGTATTATTCTTGGT
1 ATTTTT-TTTTGTATTTTGTATTATTCTTGGT
*
7964904 ATTTTTTCTTGTATTT
1 ATTTTTTTTTGTATTT
7964920 CATATTTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
30 6 0.15
31 19 0.46
32 16 0.39
ACGTcount: A:0.12, C:0.04, G:0.09, T:0.76
Consensus pattern (31 bp):
ATTTTTTTTTGTATTTTGTATTATTCTTGGT
Found at i:7964940 original size:20 final size:21
Alignment explanation
Indices: 7964915--7964956 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7964905 TTTTTTCTTG
7964915 TATTTCATATTT-TGTATTTA
1 TATTTCATATTTATGTATTTA
* *
7964935 TATTTCGTATTTATTTATTTA
1 TATTTCATATTTATGTATTTA
7964956 T
1 T
7964957 TATGGATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTTCATATTTATGTATTTA
Found at i:7964947 original size:13 final size:13
Alignment explanation
Indices: 7964914--7964948 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7964904 ATTTTTTCTT
*
7964914 GTATTTCATATTTT
1 GTATTT-ATATTTC
7964928 GTATTTATATTTC
1 GTATTTATATTTC
7964941 GTATTTAT
1 GTATTTAT
7964949 TTATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.23, C:0.06, G:0.09, T:0.63
Consensus pattern (13 bp):
GTATTTATATTTC
Found at i:7967874 original size:20 final size:19
Alignment explanation
Indices: 7967846--7967883 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7967836 CTAGTTGTCA
*
7967846 TCACCGCCACCGTCGTTGG
1 TCACCGCCACCATCGTTGG
7967865 TCACCGGCCACCATCGTTG
1 TCACC-GCCACCATCGTTG
7967884 ATGACCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.13, C:0.42, G:0.24, T:0.21
Consensus pattern (19 bp):
TCACCGCCACCATCGTTGG
Found at i:7968123 original size:25 final size:26
Alignment explanation
Indices: 7968095--7968144 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
7968085 CTTTTTTTTA
7968095 TAGAAAGCTTTTTTTTTTA-TTTTGG
1 TAGAAAGCTTTTTTTTTTAGTTTTGG
***
7968120 TAGAATTTTTTTTTTTTTAGTTTTG
1 TAGAAAGCTTTTTTTTTTAGTTTTG
7968145 CAAAGTTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.18, C:0.02, G:0.14, T:0.66
Consensus pattern (26 bp):
TAGAAAGCTTTTTTTTTTAGTTTTGG
Found at i:7968428 original size:15 final size:14
Alignment explanation
Indices: 7968408--7968453 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
7968398 TAAACTTGAT
7968408 AAGGAAAAGAAGAAA
1 AAGGAAAAGAA-AAA
*
7968423 AAGGAAAAAGAAAGA
1 AAGG-AAAAGAAAAA
*
7968438 AAGAAAAAGAAAAA
1 AAGGAAAAGAAAAA
7968452 AA
1 AA
7968454 TAGAAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 11 0.41
15 9 0.33
16 7 0.26
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (14 bp):
AAGGAAAAGAAAAA
Found at i:7968446 original size:10 final size:9
Alignment explanation
Indices: 7968412--7968480 Score: 68
Period size: 10 Copynumber: 7.2 Consensus size: 9
7968402 CTTGATAAGG
7968412 AAAAGAAGAA
1 AAAAGAA-AA
*
7968422 AAAGGAAAA
1 AAAAGAAAA
7968431 AGAAAGAAAGA
1 A-AAAGAAA-A
7968442 AAAAGAAAA
1 AAAAGAAAA
7968451 AAATAG-AAA
1 AAA-AGAAAA
*
7968460 AATAGAAAA
1 AAAAGAAAA
7968469 AGAAAGAAAA
1 A-AAAGAAAA
7968479 AA
1 AA
7968481 TAAAAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
8 2 0.04
9 17 0.34
10 29 0.58
11 2 0.04
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:7968458 original size:24 final size:24
Alignment explanation
Indices: 7968426--7968479 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
7968416 GAAGAAAAAG
7968426 GAAAAAGAAAGAA-AGAAAAAGAAA
1 GAAAAAGAAA-AATAGAAAAAGAAA
7968450 -AAAATAGAAAAATAGAAAAAGAAA
1 GAAAA-AGAAAAATAGAAAAAGAAA
7968474 GAAAAA
1 GAAAAA
7968480 ATAAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 6 0.22
24 17 0.63
25 4 0.15
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.04
Consensus pattern (24 bp):
GAAAAAGAAAAATAGAAAAAGAAA
Found at i:7968468 original size:18 final size:17
Alignment explanation
Indices: 7968412--7968486 Score: 73
Period size: 18 Copynumber: 4.2 Consensus size: 17
7968402 CTTGATAAGG
*
7968412 AAAAG-AAGAAAAAGGA
1 AAAAGAAAGAAAAAAGA
7968428 AAAAGAAAGAAAGAAAAAGA
1 AAAAGAAAG--A-AAAAAGA
7968448 AAAA-AATAGAAAAATAGA
1 AAAAGAA-AGAAAAA-AGA
*
7968466 AAAAGAAAGAAAAAATA
1 AAAAGAAAGAAAAAAGA
7968483 AAAA
1 AAAA
7968487 ATATAATAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
16 5 0.10
17 13 0.26
18 15 0.30
19 5 0.10
20 12 0.24
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (17 bp):
AAAAGAAAGAAAAAAGA
Found at i:7968497 original size:3 final size:3
Alignment explanation
Indices: 7968489--7968545 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
7968479 AATAAAAAAT
7968489 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7968537 ATA ATA ATA
1 ATA ATA ATA
7968546 CAAAATGGTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7968814 original size:48 final size:48
Alignment explanation
Indices: 7968740--7968979 Score: 287
Period size: 48 Copynumber: 5.0 Consensus size: 48
7968730 ACTTTTGAAA
*
7968740 ATTT-AAAAAGGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTC
1 ATTTGAAAAA-GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATCTC
*
7968788 ATTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAAC-TTAAAAATCTT
1 ATTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATCTC
* * * *
7968835 ATCTAGAAAAGGCTCTTCTAAGTAGAGGCTTAACAACTTTAAAAA----
1 AT-TTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATCTC
*
7968880 ATTT-AAAAAGGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTCATC
1 ATTTGAAAAA-GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATC-TC
* * * *
7968929 ATCTTGGAAAAGCTCCTCTAAGCAGATGCTCAATAACTTTAAAAATCTC
1 AT-TTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATCTC
7968978 AT
1 AT
7968980 CGTAGAGGCT
Statistics
Matches: 165, Mismatches: 16, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.02
44 32 0.19
45 2 0.01
47 12 0.07
48 59 0.36
49 18 0.11
50 34 0.21
51 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.28
Consensus pattern (48 bp):
ATTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAAATCTC
Found at i:7968816 original size:92 final size:93
Alignment explanation
Indices: 7968696--7968979 Score: 282
Period size: 92 Copynumber: 3.0 Consensus size: 93
7968686 ACTTTTGAAA
* ** * *
7968696 ATTTAAAGAGGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAAT-TTAAAAAGGCTCCTCTAA
1 ATTTAAAAAGGCTCCTCTAAGTAGAGGCTCAACAACTTTTAAAAATATTAAAAAGGCTCCTCTAA
7968760 GCAGAGGCTCAACAACTTTAAAAATCTC
66 GCAGAGGCTCAACAACTTTAAAAATCTC
7968788 ATTTGAAAAA-GCTCCTCTAAGTAGAGGCTCAACAAC--TTAAAAATCTTATCTAGAAAAGGCTC
1 ATTT-AAAAAGGCTCCTCTAAGTAGAGGCTCAACAACTTTTAAAAA---TAT-TA-AAAAGGCTC
* * *
7968850 TTCTAAGTAGAGGCTTAACAACTTTAAAAA----
60 CTCTAAGCAGAGGCTCAACAACTTTAAAAATCTC
*
7968880 ATTTAAAAAGGCTCCTCTAAGTAGAGGCTCAACAAC-TTTAAAATTCATCATCTTGGAAAA-GCT
1 ATTTAAAAAGGCTCCTCTAAGTAGAGGCTCAACAACTTTTAAAA---AT-A--TT-AAAAAGGCT
* *
7968943 CCTCTAAGCAGATGCTCAATAACTTTAAAAATCTC
59 CCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTC
7968978 AT
1 AT
7968980 CGTAGAGGCT
Statistics
Matches: 158, Mismatches: 14, Indels: 34
0.77 0.07 0.17
Matches are distributed among these distances:
90 6 0.04
91 5 0.03
92 57 0.36
93 12 0.08
94 31 0.20
95 7 0.04
96 38 0.24
98 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (93 bp):
ATTTAAAAAGGCTCCTCTAAGTAGAGGCTCAACAACTTTTAAAAATATTAAAAAGGCTCCTCTAA
GCAGAGGCTCAACAACTTTAAAAATCTC
Found at i:7968919 original size:44 final size:44
Alignment explanation
Indices: 7968680--7968922 Score: 274
Period size: 44 Copynumber: 5.3 Consensus size: 44
7968670 CTCCTGAAGT
** * ** *
7968680 TCAACAACTTTTGAAAATTTAAAGAGGCTCCTCTAAACAAAGGC
1 TCAACAACTTTAAAAAATTTAAAAAGGCTCCTCTAAGTAGAGGC
** *
7968724 TCAACAACTTTTGAAAATTTAAAAAGGCTCCTCTAAGCAGAGGC
1 TCAACAACTTTAAAAAATTTAAAAAGGCTCCTCTAAGTAGAGGC
7968768 TCAACAACTTTAAAAATCTCATTTGAAAAA-GCTCCTCTAAGTAGAGGC
1 TCAACAACTTTAAAAA----ATTT-AAAAAGGCTCCTCTAAGTAGAGGC
* *
7968816 TCAACAAC-TTAAAAATCTTATCTAGAAAAGGCTCTTCTAAGTAGAGGC
1 TCAACAACTTTAAAAA----ATTTA-AAAAGGCTCCTCTAAGTAGAGGC
*
7968864 TTAACAACTTTAAAAAATTTAAAAAGGCTCCTCTAAGTAGAGGC
1 TCAACAACTTTAAAAAATTTAAAAAGGCTCCTCTAAGTAGAGGC
7968908 TCAACAACTTTAAAA
1 TCAACAACTTTAAAA
7968923 TTCATCATCT
Statistics
Matches: 178, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
44 91 0.51
45 4 0.02
46 1 0.01
47 17 0.10
48 53 0.30
49 12 0.07
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.26
Consensus pattern (44 bp):
TCAACAACTTTAAAAAATTTAAAAAGGCTCCTCTAAGTAGAGGC
Found at i:7969055 original size:81 final size:81
Alignment explanation
Indices: 7968900--7969053 Score: 204
Period size: 80 Copynumber: 1.9 Consensus size: 81
7968890 GCTCCTCTAA
* * * *
7968900 GTAGAGGCTCAACAACTTTAAAATTCATCATCTTGGAAAAGCTCCTCTAAGCAGATGCTCAATAA
1 GTAGAGGCTCAACAACTTTAAAAATCATCATCTTGGAAAAGCTCCTCTAACCAGAGGCTCAACAA
7968965 CTTTAAAAATCTCATC
66 CTTTAAAAATCTCATC
* * * **
7968981 GTAGAGGCTCAACAACTTTAAAAATC-TTATC-TGGAAAAGGTTCCTTTAACCAGAGGCTTTACA
1 GTAGAGGCTCAACAACTTTAAAAATCATCATCTTGGAAAA-GCTCCTCTAACCAGAGGCTCAACA
7969044 ACTTTAAAAA
65 ACTTTAAAAA
7969054 ATTTAAAAAG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 7 0.11
80 31 0.49
81 25 0.40
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (81 bp):
GTAGAGGCTCAACAACTTTAAAAATCATCATCTTGGAAAAGCTCCTCTAACCAGAGGCTCAACAA
CTTTAAAAATCTCATC
Found at i:7969145 original size:173 final size:172
Alignment explanation
Indices: 7968808--7969152 Score: 496
Period size: 174 Copynumber: 2.0 Consensus size: 172
7968798 GCTCCTCTAA
**
7968808 GTAGAGGCTCAACAACTTAAAAATCTTATCTAGAAAAGGCTCTTCTAAGTAGAGGCTTAACAACT
1 GTAGAGGCTCAACAACTTAAAAATCTTATCTAGAAAAGGCTCTTCTAACCAGAGGCTTAACAACT
* ** * *
7968873 TTAAAAAATTTAAAAAGGCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCATCTTGGAA
66 TTAAAAAATTTAAAAAGGCTCATCTAACCAGAAGCTCAACAACTTTAAAACTCATCATCTTGGAA
* * *
7968938 AAGCTCCTCTAAGCAGATGCTCAATAACTTTAAAAATCTCATC
131 AAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAAT-TCATC
* * *
7968981 GTAGAGGCTCAACAACTTTAAAAATCTTATCTGGAAAAGGTTCCTT-TAACCAGAGGCTTTACAA
1 GTAGAGGCTCAACAAC-TTAAAAATCTTATCTAGAAAAGGCT-CTTCTAACCAGAGGCTTAACAA
* *
7969045 CTTTAAAAAATTTAAAAAGGCTCATCTAACCAGAAGTTCAACAACTTTAAAACTC-TTATCTTGG
64 CTTTAAAAAATTTAAAAAGGCTCATCTAACCAGAAGCTCAACAACTTTAAAACTCATCATCTTGG
* *
7969109 AAAAGCTCCTCTAAGCAAAGGCTCGACAATTTTAAAAATTCATC
129 AAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTCATC
7969153 TTGAAAAAGC
Statistics
Matches: 153, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
172 5 0.03
173 58 0.38
174 87 0.57
175 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (172 bp):
GTAGAGGCTCAACAACTTAAAAATCTTATCTAGAAAAGGCTCTTCTAACCAGAGGCTTAACAACT
TTAAAAAATTTAAAAAGGCTCATCTAACCAGAAGCTCAACAACTTTAAAACTCATCATCTTGGAA
AAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTCATC
Found at i:7969162 original size:48 final size:49
Alignment explanation
Indices: 7968985--7969202 Score: 182
Period size: 49 Copynumber: 4.6 Consensus size: 49
7968975 CTCATCGTAG
* * * * * * *
7968985 AGGCTCAACAACTTTAAAAATCTTATCTGGAAAAGGTTCCTTTAACCAG
1 AGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTAAGCAA
** * *
7969034 AGGCTTTACAACTTTAAAAA----AT-TT-AAAAAGGCTCATCTAACCAGA
1 AGGCTCAACAACTTTAAAAATCTCATCTTGAAAAA-GCTCCTCTAAGCA-A
* * * *
7969079 A-GTTCAACAACTTTAAAACTCTTATCTTGGAAAAGCTCCTCTAAGCAA
1 AGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTAAGCAA
* * * *
7969127 AGGCTCGACAATTTTAAAAAT-TCATCTTGAAAAAGCTCCTTTAAGCAG
1 AGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTAAGCAA
*
7969175 AGGCTCAATAACTTTAAAAATCTCATCT
1 AGGCTCAACAACTTTAAAAATCTCATCT
7969203 GTTCTTGAAA
Statistics
Matches: 133, Mismatches: 26, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.03
44 25 0.19
45 3 0.02
48 45 0.34
49 52 0.39
50 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (49 bp):
AGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTAAGCAA
Found at i:7980296 original size:15 final size:14
Alignment explanation
Indices: 7980278--7980310 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7980268 AATTTTTTTC
7980278 TTTTTGTTTTTGA-T
1 TTTTTGTTTTT-ACT
7980292 TTTTTGTTTTTACT
1 TTTTTGTTTTTACT
7980306 TTTTT
1 TTTTT
7980311 TGTTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.06, C:0.03, G:0.09, T:0.82
Consensus pattern (14 bp):
TTTTTGTTTTTACT
Found at i:7981325 original size:14 final size:15
Alignment explanation
Indices: 7981303--7981332 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7981293 ATTTTTCCTT
7981303 TTTTATTTTTATAAA
1 TTTTATTTTTATAAA
7981318 TTTT-TTTTTATAAA
1 TTTTATTTTTATAAA
7981332 T
1 T
7981333 ACTCCAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTATTTTTATAAA
Found at i:7983398 original size:34 final size:34
Alignment explanation
Indices: 7983356--7983437 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
7983346 AAAATTTAAC
* *
7983356 CAAAATAATATTGTTATACAAAAATTTTTGCAAT
1 CAAAATAATATTGTTACACAAAAACTTTTGCAAT
* * *
7983390 CAAAATAATATTATTACATAAAAACTTTTGTAAT
1 CAAAATAATATTGTTACACAAAAACTTTTGCAAT
*
7983424 CAAAAT-TTATTGTT
1 CAAAATAATATTGTT
7983438 GCTAAAATAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 6 0.15
34 35 0.85
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (34 bp):
CAAAATAATATTGTTACACAAAAACTTTTGCAAT
Found at i:7990464 original size:16 final size:17
Alignment explanation
Indices: 7990435--7990466 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7990425 AATCAAGATA
7990435 AAGAAAGTAGAAATAAT
1 AAGAAAGTAGAAATAAT
7990452 AAGAAAG-AGAAATAA
1 AAGAAAGTAGAAATAA
7990467 CAAAGGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12
Consensus pattern (17 bp):
AAGAAAGTAGAAATAAT
Found at i:7992522 original size:3 final size:3
Alignment explanation
Indices: 7992514--7992550 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
7992504 ATAATTTTGT
7992514 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTGA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
7992551 ATTAATTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7993452 original size:11 final size:11
Alignment explanation
Indices: 7993428--7993478 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
7993418 TTTCATTTTC
**
7993428 TATTTTTATTT
1 TATTTTTAAGT
7993439 TATTTTTAAGT
1 TATTTTTAAGT
7993450 TA-TTTTAAGT
1 TATTTTTAAGT
* *
7993460 TATTTGTTTATT
1 TATTT-TTAAGT
7993472 TATTTTT
1 TATTTTT
7993479 TCTATTGTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
10 10 0.29
11 15 0.44
12 9 0.26
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.73
Consensus pattern (11 bp):
TATTTTTAAGT
Done.