Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 46 of 106
Found at i:7993515 original size:3 final size:3
Alignment explanation
Indices: 7993507--7993537 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7993497 ATTTTGTTGA
*
7993507 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7993538 TTAAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7993750 original size:20 final size:19
Alignment explanation
Indices: 7993727--7993784 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
7993717 AATTTTGGCT
*
7993727 AAATAATAATAATAATAATA
1 AAATAATAA-AAAAATAATA
*
7993747 AAATTATAAAAAAAATAA-A
1 AAATAAT-AAAAAAATAATA
*
7993766 AAA-AATAAGAAAATAATA
1 AAATAATAAAAAAATAATA
7993784 A
1 A
7993785 GTTGTTTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.28
18 4 0.12
19 4 0.12
20 13 0.41
21 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (19 bp):
AAATAATAAAAAAATAATA
Found at i:7993906 original size:18 final size:19
Alignment explanation
Indices: 7993877--7993912 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7993867 AATTTTTTCG
*
7993877 AATTTCACCATAGAGTTGA
1 AATTTCACCATAAAGTTGA
7993896 AATTT-ACCATAAAGTTG
1 AATTTCACCATAAAGTTG
7993913 GAATAATCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (19 bp):
AATTTCACCATAAAGTTGA
Found at i:8004332 original size:73 final size:73
Alignment explanation
Indices: 8004246--8004401 Score: 215
Period size: 73 Copynumber: 2.1 Consensus size: 73
8004236 AGATTTTTGA
* ** * * *
8004246 ATTTAAAGTTCGTTGCCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTT-GTTGCCTTTAGTT
1 ATTTAAAGTTCGTTACCTCTAGTCAGAAAAACCTTTTAA-ATTTAAAGTTTCATTGCCTTTAGTC
8004310 AAATGAGCC
65 AAATGAGCC
* * *
8004319 ATTTAAAGTTCGTTACCTTTGGTCAGAAAAACCTTTTAAATTTAAAGTTTCATTGCCTTTGGTCA
1 ATTTAAAGTTCGTTACCTCTAGTCAGAAAAACCTTTTAAATTTAAAGTTTCATTGCCTTTAGTCA
8004384 AATGAGCC
66 AATGAGCC
8004392 ATTTAAAGTT
1 ATTTAAAGTT
8004402 TTATAGCCTC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
72 11 0.15
73 62 0.85
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (73 bp):
ATTTAAAGTTCGTTACCTCTAGTCAGAAAAACCTTTTAAATTTAAAGTTTCATTGCCTTTAGTCA
AATGAGCC
Found at i:8004397 original size:40 final size:39
Alignment explanation
Indices: 8004240--8004398 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 39
8004230 CCTCATAGAT
* * * *
8004240 TTTTGAATTTAAAGTTCGTTGCCTCTAGTCAGAGGAGCC
1 TTTTAAATTTAAAGTTCGTTGCCTTTAGTCAAATGAGCC
* *
8004279 TTTTAACATTTAAAGTTTGTTGCCTTTAGTTAAATGAGCC
1 TTTTAA-ATTTAAAGTTCGTTGCCTTTAGTCAAATGAGCC
* * * *
8004319 ------ATTTAAAGTTCGTTACCTTTGGTCAGAA-AAACC
1 TTTTAAATTTAAAGTTCGTTGCCTTTAGTCA-AATGAGCC
* *
8004352 TTTTAAATTTAAAGTTTCATTGCCTTTGGTCAAATGAGCC
1 TTTTAAATTTAAAG-TTCGTTGCCTTTAGTCAAATGAGCC
*
8004392 ATTTAAA
1 TTTTAAA
8004399 GTTTTATAGC
Statistics
Matches: 93, Mismatches: 17, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
33 24 0.26
34 2 0.02
39 15 0.16
40 52 0.56
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (39 bp):
TTTTAAATTTAAAGTTCGTTGCCTTTAGTCAAATGAGCC
Found at i:8004401 original size:34 final size:34
Alignment explanation
Indices: 8004358--8004424 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
8004348 AACCTTTTAA
* *
8004358 ATTTAAAGTTTCATTGCCTTTGGTCAAATGAGCC
1 ATTTAAAGTTTCATAGCCTCTGGTCAAATGAGCC
* *
8004392 ATTTAAAGTTTTATAGCCTCTGGTCAGATGAGC
1 ATTTAAAGTTTCATAGCCTCTGGTCAAATGAGC
8004425 TTTTTTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (34 bp):
ATTTAAAGTTTCATAGCCTCTGGTCAAATGAGCC
Found at i:8004428 original size:73 final size:73
Alignment explanation
Indices: 8004246--8004428 Score: 212
Period size: 73 Copynumber: 2.5 Consensus size: 73
8004236 AGATTTTTGA
* * * *
8004246 ATTTAAAGTTCGTT-GCCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTGCCTTTAGTT
1 ATTTAAAGTTCGTTAGCCTCTGGTCAGAAGAG-CTTTTAACATTTAAAGTTTATTGCCTTTAGTC
8004310 AAATGAGCC
65 AAATGAGCC
* * * *
8004319 ATTTAAAGTTCGTTA-CCTTTGGTCAGAAAAACCTTTTAA-ATTTAAAGTTTCATTGCCTTTGGT
1 ATTTAAAGTTCGTTAGCCTCTGGTCAG-AAGAGCTTTTAACATTTAAAGTTT-ATTGCCTTTAGT
8004382 CAAATGAGCC
64 CAAATGAGCC
* *
8004392 ATTTAAAGTT-TTATAGCCTCTGGTCAGATGAGCTTTT
1 ATTTAAAGTTCGT-TAGCCTCTGGTCAGAAGAGCTTTT
8004429 TTAATTTTAA
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
72 12 0.13
73 68 0.74
74 12 0.13
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.39
Consensus pattern (73 bp):
ATTTAAAGTTCGTTAGCCTCTGGTCAGAAGAGCTTTTAACATTTAAAGTTTATTGCCTTTAGTCA
AATGAGCC
Found at i:8004597 original size:33 final size:33
Alignment explanation
Indices: 8004526--8004597 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
8004516 TCTTTTTTTA
* * * *
8004526 ATTTAAAATTTGTTGCCTTTGGTTAAATGAGCC
1 ATTTAAAATTCGTTGCCTTTAGCTAAATAAGCC
* *
8004559 ATTTAAAGTTCGTTGCCTTTAGCTAGATAAGCC
1 ATTTAAAATTCGTTGCCTTTAGCTAAATAAGCC
*
8004592 TTTTAA
1 ATTTAA
8004598 CATTTAAAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
ATTTAAAATTCGTTGCCTTTAGCTAAATAAGCC
Found at i:8004632 original size:40 final size:40
Alignment explanation
Indices: 8004588--8004833 Score: 173
Period size: 40 Copynumber: 6.2 Consensus size: 40
8004578 TAGCTAGATA
*
8004588 AGCCTTTTAACATTTAAAGTTTCATTGCCTCTGGTAGAGG
1 AGCCTTTTAACATTTAAAGTTTTATTGCCTCTGGTAGAGG
** *** * *
8004628 AGCCTTTT-GGATTTAAAG-TCCGTTGCCTTTAGTTAGA-G
1 AGCCTTTTAACATTTAAAGTTTTATTGCCTCT-GGTAGAGG
* * * * *
8004666 AGCCTTTTAACATTTAAA-ATTTGTTGTCTCTGGTCATAAG
1 AGCCTTTTAACATTTAAAGTTTTATTGCCTCTGGT-AGAGG
* * * * *
8004706 AGCTTTTTAACATTTCAAGTTTTATTGCTTATGGTTAAAGG
1 AGCCTTTTAACATTTAAAGTTTTATTGCCTCTGG-TAGAGG
* * *
8004747 AACCTTCTAA-ATTTAAAGTTTTATTGCCTCTAGTTAGAGG
1 AGCCTTTTAACATTTAAAGTTTTATTGCCTCT-GGTAGAGG
* * * *
8004787 AGCCTTTTGA-ATTTAAAGTTTTATAGCCTTTGTTTAGAGG
1 AGCCTTTTAACATTTAAAGTTTTATTGCCTCTG-GTAGAGG
8004827 AG-CTTTT
1 AGCCTTTT
8004834 CAAATTTTCT
Statistics
Matches: 161, Mismatches: 36, Indels: 19
0.75 0.17 0.09
Matches are distributed among these distances:
38 20 0.12
39 36 0.22
40 83 0.52
41 21 0.13
42 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (40 bp):
AGCCTTTTAACATTTAAAGTTTTATTGCCTCTGGTAGAGG
Found at i:8005982 original size:3 final size:3
Alignment explanation
Indices: 8005974--8006001 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8005964 ATTTTGTTGC
8005974 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8006002 TTAGAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8005986 original size:24 final size:24
Alignment explanation
Indices: 8005933--8005983 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
8005923 ATGTTATTTG
*
8005933 TTTATTTATTTTTTCTATTGTCTA
1 TTTATTTATTTTTTCTATTATCTA
8005957 TTTATTTATTTTGTTGCTATTAT-TA
1 TTTATTTATTTT-TT-CTATTATCTA
8005982 TT
1 TT
8005984 ATTATTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 12 0.50
25 6 0.25
26 6 0.25
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71
Consensus pattern (24 bp):
TTTATTTATTTTTTCTATTATCTA
Found at i:8006190 original size:3 final size:3
Alignment explanation
Indices: 8006182--8006208 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8006172 TAATTTTTGC
8006182 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
8006209 AATTATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8007686 original size:3 final size:3
Alignment explanation
Indices: 8007678--8007730 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
8007668 TAGTTTTGGC
** *
8007678 AAT AAT AAT AAT AAT AAT AAT GGT AAT AAT AAA AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8007726 AAT AA
1 AAT AA
8007731 CAAATTCTGC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8009547 original size:12 final size:13
Alignment explanation
Indices: 8009531--8009573 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
8009521 TTTTTATATA
8009531 ATTTTATGATGAT
1 ATTTTATGATGAT
*
8009544 -TTTTATTATGAT
1 ATTTTATGATGAT
8009556 ATTTT-TGCATGAT
1 ATTTTATG-ATGAT
8009569 ATTTT
1 ATTTT
8009574 GCATGGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (13 bp):
ATTTTATGATGAT
Found at i:8009547 original size:25 final size:25
Alignment explanation
Indices: 8009519--8009573 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
8009509 TTATGGTTTA
8009519 TTTTTTTAT-ATAATTTTATG-ATGAT
1 TTTTTTTATGAT-ATTTT-TGCATGAT
*
8009544 TTTTATTATGATATTTTTGCATGAT
1 TTTTTTTATGATATTTTTGCATGAT
*
8009569 ATTTT
1 TTTTT
8009574 GCATGGGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 2 0.08
25 21 0.84
26 2 0.08
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (25 bp):
TTTTTTTATGATATTTTTGCATGAT
Found at i:8009639 original size:47 final size:47
Alignment explanation
Indices: 8009533--8009639 Score: 112
Period size: 47 Copynumber: 2.3 Consensus size: 47
8009523 TTTATATAAT
**
8009533 TTTATGATGATTTTTATTATGATATTTTTGCATGATATTTTGCATGGGA
1 TTTATGAT-ATTTGCATTATGATATTTTTGCATGATATTTTGCAT-GGA
* * *
8009582 TTTAT-TTATTTGCATTATGAT-TTTATTGTATGATTATTTTTCAT-GA
1 TTTATGATATTTGCATTATGATATTT-TTGCATGA-TATTTTGCATGGA
8009628 TTTATGATATTT
1 TTTATGATATTT
8009640 TTGGCATGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
46 10 0.20
47 24 0.49
48 10 0.20
49 5 0.10
ACGTcount: A:0.24, C:0.04, G:0.14, T:0.58
Consensus pattern (47 bp):
TTTATGATATTTGCATTATGATATTTTTGCATGATATTTTGCATGGA
Found at i:8009649 original size:21 final size:20
Alignment explanation
Indices: 8009610--8009651 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
8009600 GATTTTATTG
8009610 TATGATTATTTTTCATGATT
1 TATGATTATTTTTCATGATT
8009630 TATGA-TATTTTTGGCATGATT
1 TATGATTATTTTT--CATGATT
8009651 T
1 T
8009652 TATTATGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 5 0.25
21 8 0.40
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (20 bp):
TATGATTATTTTTCATGATT
Found at i:8012994 original size:34 final size:35
Alignment explanation
Indices: 8012943--8013023 Score: 103
Period size: 34 Copynumber: 2.3 Consensus size: 35
8012933 TATTGATCTA
* *
8012943 AGCACTATTCATTAACTCGAT-ACTA-TGCTAACTC
1 AGCACTATTCATCAACTC-ATCACTATTGATAACTC
* *
8012977 AGTACTATTCATCAACTCATCACTATTGATGACTC
1 AGCACTATTCATCAACTCATCACTATTGATAACTC
8013012 AGCACTATTCAT
1 AGCACTATTCAT
8013024 TTTCTTCATT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
33 2 0.05
34 20 0.50
35 18 0.45
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (35 bp):
AGCACTATTCATCAACTCATCACTATTGATAACTC
Found at i:8012995 original size:18 final size:17
Alignment explanation
Indices: 8012946--8013023 Score: 63
Period size: 18 Copynumber: 4.5 Consensus size: 17
8012936 TGATCTAAGC
8012946 ACTATTCATTAACTC-GAT
1 ACTATTCA-TAACTCAG-T
*
8012964 ACTATGC-TAACTCAGT
1 ACTATTCATAACTCAGT
8012980 ACTATTCATCAACTCA-T
1 ACTATTCAT-AACTCAGT
* * *
8012997 CACTATTGATGACTCAGC
1 -ACTATTCATAACTCAGT
8013015 ACTATTCAT
1 ACTATTCAT
8013024 TTTCTTCATT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
16 13 0.27
17 16 0.33
18 20 0.41
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.35
Consensus pattern (17 bp):
ACTATTCATAACTCAGT
Found at i:8015201 original size:323 final size:321
Alignment explanation
Indices: 8014519--8015967 Score: 1366
Period size: 323 Copynumber: 4.5 Consensus size: 321
8014509 AAAAACACAT
* * * ** * *
8014519 TATTGAAGCTATCCAAACTGTTAAAATAGAATAATAATAATAAATTTGTATTTTTGCCTTTTAAC
1 TATTGAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAAT
** ** *
8014584 GGTACAAAAAATCCTAAACAT-TCCCTAAACAATAA-TTTTTCACACATATCAACTATGAAAACC
66 GACACAAAAAGCCCTAAACATAT--GTAAACAATAACTTTTTCACACATATCAACT-TGAAAACC
* * * * * * *
8014647 AAATTCAATCATTCAGACAAGTTTAGTATAATGTATTTAAGCTATCGAAGCT-ATTAAAATAGAA
128 AAGTTCAATCATTCAGACAAGTTTAATATCATATATTTAAGCTACCCAA-ATGATTAAAATAGAA
** * ** * * ** * * **
8014711 TGATAATAGCAAATTTGCA-TTTTGCCATTTAACGGCATAAAAAAGCCTTAAACAAATGTAAAC-
192 CAATAACAATAAATTTGTATTTTTGCCTTTTAACAACA-CAAAAAGCCCTAAACAAACCTAAACG
* * **
8014774 AGTAACTTTTTTACACATATCAA-TAGTGAAAACTAAGTTCAATCATTTGAACAAGTTTTGTATC
256 A-TAACTTTTTCACACATATCAACT-GTGAAAACCAAGTTCAATCATTTGAACAAGTTTAATATC
8014838 ATG
319 ATG
*
8014841 TATTTAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAAT
1 TATTGAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAAT
* * * * * * *
8014906 GATATAAAAGGCCCTAAACATATGTAAACAATAACTTTTTAACACATATGAACCTTGGAAACTAA
66 GACACAAAAAGCCCTAAACATATGTAAACAATAACTTTTTCACACATATCAA-CTTGAAAACCAA
* * * *
8014971 GTTCAATCATTAAGACAAGTTTAGTATCATATATTTAAGCTATCGAAACT-ATTAAAATAGAACA
130 GTTCAATCATTCAGACAAGTTTAATATCATATATTTAAGCTACCCAAA-TGATTAAAATAGAACA
* * * * * * * *
8015035 ATAGCAATAAATTTATATTTTTTCCTTTTAACAACACAAACAGTCTTAAATAGACCCTAAACGAT
194 ATAACAATAAATTTGTATTTTTGCCTTTTAACAACACAAAAAGCCCTAAACA-AACCTAAACGAT
*
8015100 AACTTTTTCACACATATCAACTGTGAAAACTAAGTTCAATCATTTGAACAAGTTTAATATCATG
258 AACTTTTTCACACATATCAACTGTGAAAACCAAGTTCAATCATTTGAACAAGTTTAATATCATG
* * *
8015164 TATTGAAGCTATCGAAACTGTTAAAACATAATAATAATAGCAAATTTGTATTTTTGCCTTTTAAT
1 TATTGAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAAT
* * * * * ** * *
8015229 GGCACAAAAAGTCCTTAACAAACGTAAATGATAACTTTTTCACACATATCAATTGTGAAAACAAA
66 GACACAAAAAGCCCTAAACATATGTAAACAATAACTTTTTCACACATATCAACT-TGAAAACCAA
* * * *
8015294 GTTCAATCATT-TGAACAAGTTTAATATCATATATTTAAGCTACCCAAATGGTTAAAACAAAACA
130 GTTCAATCATTCAG-ACAAGTTTAATATCATATATTTAAGCTACCCAAATGATTAAAATAGAACA
* * * * * *
8015358 ATAACAATAAATTTGTATTTTTGCATTTTAACAGCATAAAAAGTCCTAAACAGACCCCAAACGAT
194 ATAACAATAAATTTGTATTTTTGCCTTTTAACAACACAAAAAGCCCTAAACA-AACCTAAACGAT
* * * *
8015423 AACTTTTTCACACATGTCAACTGTGAAAACCAAATTCAATCA-TTGAGACAAGTTTAGTATTATG
258 AACTTTTTCACACATATCAACTGTGAAAACCAAGTTCAATCATTTGA-ACAAGTTTAATATCATG
* * * * * *
8015487 CATTTAAGCTATCAAAACTGTTAAAACAAAACAATAATAGTACATTTACATTTTTGCCTTTTAA-
1 TATTGAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAAT
* * ** * * *
8015551 CAGCACAAAAAGCCTTAAACAGGTGTAAATAGTAACTTTTTCACACACATCAA-TAGTGAAAACC
66 GA-CACAAAAAGCCCTAAACATATGTAAACAATAACTTTTTCACACATATCAACT--TGAAAACC
* * *
8015615 AAGTTCAATCATTCAGACAAATTTAATATCATGTATTTAAGCTACCCAAATGGTTAAAATAGAAC
128 AAGTTCAATCATTCAGACAAGTTTAATATCATATATTTAAGCTACCCAAATGATTAAAATAGAAC
* ** * * ** *
8015680 AATAATAGGAAATTTGTATTTTTTCCTTTTAACTACACAAAAAGCCCTAAACAAATGTAAATGAT
193 AATAACAATAAATTTGTATTTTTGCCTTTTAACAACACAAAAAGCCCTAAACAAACCTAAACGAT
* * * *
8015745 AA-ATTTTCACACATATTAACTGT-AAAAGCCAAGTTTAATCATTTGAATAAGTTTAATATCATG
258 AACTTTTTCACACATATCAACTGTGAAAA-CCAAGTTCAATCATTTGAACAAGTTTAATATCATG
* * * * * * * *
8015808 TATTG-AGATTATCCAAATTGTTAAAATAGAACAATAATAGCCAATTTGCATTTTGGCCTTTTAA
1 TATTGAAG-CTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAA
* * *** * * * *** *
8015872 -CACCATAAAAAGTTATAAACAAATGTTAATAGCCACTTTTTC-CACATATCAACCGTG-AAACT
65 TGA-CACAAAAAGCCCTAAACATATGTAAACAATAACTTTTTCACACATATCAA-CTTGAAAAC-
* * * *
8015934 CAAGTTCAAACAGTCAAATAAGTTTAATATCATA
127 CAAGTTCAATCATTCAGACAAGTTTAATATCATA
8015968 AGCTTACTTT
Statistics
Matches: 942, Mismatches: 164, Indels: 44
0.82 0.14 0.04
Matches are distributed among these distances:
319 4 0.00
320 45 0.05
321 134 0.14
322 196 0.21
323 560 0.59
324 3 0.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (321 bp):
TATTGAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAAT
GACACAAAAAGCCCTAAACATATGTAAACAATAACTTTTTCACACATATCAACTTGAAAACCAAG
TTCAATCATTCAGACAAGTTTAATATCATATATTTAAGCTACCCAAATGATTAAAATAGAACAAT
AACAATAAATTTGTATTTTTGCCTTTTAACAACACAAAAAGCCCTAAACAAACCTAAACGATAAC
TTTTTCACACATATCAACTGTGAAAACCAAGTTCAATCATTTGAACAAGTTTAATATCATG
Found at i:8015589 original size:484 final size:480
Alignment explanation
Indices: 8014524--8015884 Score: 1526
Period size: 484 Copynumber: 2.8 Consensus size: 480
8014514 CACATTATTG
* * * * *
8014524 AAGCTATCCAAACTGTTAAAATAGAATAATAATAATAAATTTGTATTTTTGCCTTTTAACGGTAC
1 AAGCTATCAAAACTGTTAAAATAGAACAATAATAATAAATTTATATTTTTGCCTTTTAACAGCAC
* * * * * *
8014589 AAAAAATCC-TAAACATTCCCTAAACAATAA-TTTTTCACACATATCAACTATGAAAACCAAATT
66 -AAAAAGCCTTAAACA-GCTCTAAA-AGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTT
* * * * *
8014652 CAATCATTCAGACAAGTTTAGTATAATGTATTTAAGCTATCGAAGCTATTAAAATAGAATGATAA
128 CAATCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCGAAACTGTTAAAATAGAATAATAA
* * * * *
8014717 TAGCAAATTTGCA-TTTTGCCATTTAACGGCATAAAAAAGCCTTAAACAAATGTAAA-CAGTAAC
193 TAGCAAATTTGTATTTTTGCCTTTTAATGGCA-CAAAAAGCCTT-AACAAATGTAAATGA-TAAC
* * * **
8014780 TTTTTTACACATATCAATAGTGAAAACTAAGTTCAATCATTTGAACAAGTTTTGTATCATGTATT
255 TTTTTCACACATATCAATTGTGAAAACAAAGTTCAATCATTTGAACAAGTTTAATATCATGTATT
* * *
8014845 TAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAA-TG-A
320 TAAGCTATCCAAA-TGTTAAAACAAAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACAGCA
* * *** * * * *
8014908 TATAAAAGGCCCTAAACATATGTAAACAATAACTTTTTAACACATATGAACCTTGGAAACTAAGT
384 TA-AAAA-GTCCTAAACAGACCCAAACAATAACTTTTTAACACATATCAACCTTGAAAACCAAAT
*
8014973 TCAATCATTAAGACAAGTTTAGTATCATATATTT
447 TCAATCATTAAGACAAGTTTAGTATCATACATTT
* * ** * *
8015007 AAGCTATCGAAACTATTAAAATAGAACAATAGCAATAAATTTATATTTTTTCCTTTTAACAACAC
1 AAGCTATCAAAACTGTTAAAATAGAACAATAATAATAAATTTATATTTTTGCCTTTTAACAGCAC
* * * * * *
8015072 AAACAGTCTTAAATAGACCCTAAACGATAACTTTTTCACACATATCAACTGTGAAAACTAAGTTC
66 AAAAAGCCTTAAACAG-CTCTAAAAG-TAACTTTTTCACACATATCAACTGTGAAAACCAAGTTC
* * * *
8015137 AATCATT-TGAACAAGTTTAATATCATGTATTGAAGCTATCGAAACTGTTAAAACATAATAATAA
129 AATCATTCAG-ACAAGTTTAATATCATGTATTTAAGCTATCGAAACTGTTAAAATAGAATAATAA
*
8015201 TAGCAAATTTGTATTTTTGCCTTTTAATGGCACAAAAAGTCCTTAACAAACGTAAATGATAACTT
193 TAGCAAATTTGTATTTTTGCCTTTTAATGGCACAAAAAG-CCTTAACAAATGTAAATGATAACTT
*
8015266 TTTCACACATATCAATTGTGAAAACAAAGTTCAATCATTTGAACAAGTTTAATATCATATATTTA
257 TTTCACACATATCAATTGTGAAAACAAAGTTCAATCATTTGAACAAGTTTAATATCATGTATTTA
* * ** * *
8015331 AGCTACCCAAATGGTTAAAACAAAACAATAACAATAAATTTGTATTTTTGCATTTTAACAGCATA
322 AGCTATCCAAAT-GTTAAAACAAAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACAGCATA
* * *
8015396 AAAAGTCCTAAACAGACCCCAAACGATAACTTTTTCACACATGTCAA-CTGTGAAAACCAAATTC
386 AAAAGTCCTAAACAGA-CCCAAACAATAACTTTTTAACACATATCAACCT-TGAAAACCAAATTC
* * *
8015460 AATCATTGAGACAAGTTTAGTATTATGCATTT
449 AATCATTAAGACAAGTTTAGTATCATACATTT
* * * * *
8015492 AAGCTATCAAAACTGTTAAAACAAAACAATAATAGTACATTTACATTTTTGCCTTTTAACAGCAC
1 AAGCTATCAAAACTGTTAAAATAGAACAATAATAATAAATTTATATTTTTGCCTTTTAACAGCAC
* * *
8015557 AAAAAGCCTTAAACAGGTGTAAATAGTAACTTTTTCACACACATCAA-TAGTGAAAACCAAGTTC
66 AAAAAGCCTTAAACAGCTCTAAA-AGTAACTTTTTCACACATATCAACT-GTGAAAACCAAGTTC
* * * *
8015621 AATCATTCAGACAAATTTAATATCATGTATTTAAGCTACCCAAA-TGGTTAAAATAGAACAATAA
129 AATCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCGAAACT-GTTAAAATAGAATAATAA
* * * * *
8015685 TAGGAAATTTGTATTTTTTCCTTTTAACT-ACACAAAAAGCCCTAAACAAATGTAAATGATAA-A
193 TAGCAAATTTGTATTTTTGCCTTTTAA-TGGCACAAAAAG-CCTTAACAAATGTAAATGATAACT
* * * * *
8015748 TTTTCACACATATTAACTGT-AAAAGCCAAGTTTAATCATTTGAATAAGTTTAATATCATGTA-T
256 TTTTCACACATATCAATTGTGAAAA-CAAAGTTCAATCATTTGAACAAGTTTAATATCATGTATT
* * * * * * *
8015811 TGAGATTATCCAAATTGTTAAAATAGAACAATAATAGCCAATTTGCATTTTGGCCTTTTAACACC
320 TAAG-CTATCCAAA-TGTTAAAACAAAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACAGC
8015876 ATAAAAAGT
383 ATAAAAAGT
8015885 TATAAACAAA
Statistics
Matches: 737, Mismatches: 120, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
482 13 0.02
483 180 0.24
484 383 0.52
485 158 0.21
486 3 0.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (480 bp):
AAGCTATCAAAACTGTTAAAATAGAACAATAATAATAAATTTATATTTTTGCCTTTTAACAGCAC
AAAAAGCCTTAAACAGCTCTAAAAGTAACTTTTTCACACATATCAACTGTGAAAACCAAGTTCAA
TCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCGAAACTGTTAAAATAGAATAATAATAG
CAAATTTGTATTTTTGCCTTTTAATGGCACAAAAAGCCTTAACAAATGTAAATGATAACTTTTTC
ACACATATCAATTGTGAAAACAAAGTTCAATCATTTGAACAAGTTTAATATCATGTATTTAAGCT
ATCCAAATGTTAAAACAAAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACAGCATAAAAAG
TCCTAAACAGACCCAAACAATAACTTTTTAACACATATCAACCTTGAAAACCAAATTCAATCATT
AAGACAAGTTTAGTATCATACATTT
Found at i:8015920 original size:160 final size:161
Alignment explanation
Indices: 8014519--8015966 Score: 1216
Period size: 161 Copynumber: 9.0 Consensus size: 161
8014509 AAAAACACAT
* * * * * **
8014519 TATTGAAGCTATCCAAACTGTTAAAATAGAATAATAATAATAAATTTGTATTTTTGCCTTTTAAC
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* * * * * * * *
8014584 GGTACAAAAAATCCTAAAC-ATTCCCTAAACAATAA-TTTTTCACACATATCAACTATGAAAACC
66 AGCACAAAAAGTCCTAAACAAAT--GTAAATAGTAACTTTTTCACACATATCAACTGTGAAAACC
* * * *
8014647 AAATTCAATCA-TTCAGACAAGTTTAGTATAATG
129 AAGTTCAATCATTTGA-ACAAGTTTAATATCATG
* ** * * * ** * *
8014680 TATTTAAGCTATCGAAGCTATTAAAATAGAATGATAATAGCAAATTTGCA-TTTTGCCATTTAAC
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* * * *
8014744 GGCATAAAAAAG-CCTTAAACAAATGTAAACAGTAACTTTTTTACACATATCAA-TAGTGAAAAC
66 AGCA-CAAAAAGTCC-TAAACAAATGTAAATAGTAACTTTTTCACACATATCAACT-GTGAAAAC
* **
8014807 TAAGTTCAATCATTTGAACAAGTTTTGTATCATG
128 CAAGTTCAATCATTTGAACAAGTTTAATATCATG
* * * *
8014841 TATTTAAGCTATCAAAACTGTTAAAACAAAATAATAATAGCAAATTTGCATTTTTGCCTTTTAA-
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* * * * * * * * *
8014905 TG-ATATAAAAGGCCCTAAACATATGTAAACAATAACTTTTTAACACATATGAACCT-TGGAAAC
66 AGCACA-AAAA-GTCCTAAACAAATGTAAATAGTAACTTTTTCACACATATCAA-CTGTGAAAAC
* * * *
8014968 TAAGTTCAATCA-TTAAGACAAGTTTAGTATCATA
128 CAAGTTCAATCATTTGA-ACAAGTTTAATATCATG
* * * * * ** ** * *
8015002 TATTTAAGCTATCGAAACTATTAAAATAGAACAATAGCAATAAATTTATATTTTTTCCTTTTAAC
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* * * * *** * *
8015067 AACACAAACAGTCTTAAATAGACCCTAAA-CGATAACTTTTTCACACATATCAACTGTGAAAACT
66 AGCACAAAAAGTCCTAAACA-AATGTAAATAG-TAACTTTTTCACACATATCAACTGTGAAAACC
8015131 AAGTTCAATCATTTGAACAAGTTTAATATCATG
129 AAGTTCAATCATTTGAACAAGTTTAATATCATG
* * * * * *
8015164 TATTGAAGCTATCGAAACTGTTAAAACATAATAATAATAGCAAATTTGTATTTTTGCCTTTTAAT
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* * * * *
8015229 GGCACAAAAAGTCCTTAACAAACGTAAAT-GATAACTTTTTCACACATATCAATTGTGAAAACAA
66 AGCACAAAAAGTCCTAAACAAATGTAAATAG-TAACTTTTTCACACATATCAACTGTGAAAACCA
*
8015293 AGTTCAATCATTTGAACAAGTTTAATATCATA
130 AGTTCAATCATTTGAACAAGTTTAATATCATG
* * * ** *
8015325 TATTTAAGCTACCCAAATGGTTAAAACAAAACAATAACAATAAATTTGTATTTTTGCATTTTAAC
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* **** * *
8015390 AGCATAAAAAGTCCTAAACAGACCCCAAA-CGATAACTTTTTCACACATGTCAACTGTGAAAACC
66 AGCACAAAAAGTCCTAAACA-AATGTAAATAG-TAACTTTTTCACACATATCAACTGTGAAAACC
* * *
8015454 AAATTCAATCA-TTGAGACAAGTTTAGTATTATG
129 AAGTTCAATCATTTGA-ACAAGTTTAATATCATG
* * * * * **
8015487 CATTTAAGCTATCAAAACTGTTAAAACAAAACAATAATAGTACATTTACATTTTTGCCTTTTAAC
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
** *
8015552 AGCACAAAAAG-CCTTAAACAGGTGTAAATAGTAACTTTTTCACACACATCAA-TAGTGAAAACC
66 AGCACAAAAAGTCC-TAAACAAATGTAAATAGTAACTTTTTCACACATATCAACT-GTGAAAACC
* *
8015615 AAGTTCAATCA-TTCAGACAAATTTAATATCATG
129 AAGTTCAATCATTTGA-ACAAGTTTAATATCATG
* * * * * *
8015648 TATTTAAGCTACCCAAATGGTTAAAATAGAACAATAATAGGAAATTTGTATTTTTTCCTTTTAAC
1 TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
* * *
8015713 TA-CACAAAAAGCCCTAAACAAATGTAAAT-GATAA-ATTTTCACACATATTAACTGT-AAAAGC
66 -AGCACAAAAAGTCCTAAACAAATGTAAATAG-TAACTTTTTCACACATATCAACTGTGAAAA-C
* *
8015774 CAAGTTTAATCATTTGAATAAGTTTAATATCATG
128 CAAGTTCAATCATTTGAACAAGTTTAATATCATG
* * * * * * *
8015808 TA-TTGAGATTATCCAAATTGTTAAAATAGAACAATAATAGCCAATTTGCATTTTGGCCTTTTAA
1 TATTTAAG-CTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAA
* * ** * ** *
8015872 CACCATAAAAAGTTATAAACAAATGTTAATAGCCACTTTTTC-CACATATCAACCGTG-AAACTC
65 CAGCACAAAAAGTCCTAAACAAATGTAAATAGTAACTTTTTCACACATATCAACTGTGAAAAC-C
* * ** *
8015935 AAGTTCAAACAGTCAAATAAGTTTAATATCAT
129 AAGTTCAATCATTTGAACAAGTTTAATATCAT
8015967 AAGCTTACTT
Statistics
Matches: 1061, Mismatches: 188, Indels: 77
0.80 0.14 0.06
Matches are distributed among these distances:
159 11 0.01
160 198 0.19
161 567 0.53
162 279 0.26
163 6 0.01
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (161 bp):
TATTTAAGCTATCCAAATTGTTAAAACAAAACAATAATAGCAAATTTGTATTTTTGCCTTTTAAC
AGCACAAAAAGTCCTAAACAAATGTAAATAGTAACTTTTTCACACATATCAACTGTGAAAACCAA
GTTCAATCATTTGAACAAGTTTAATATCATG
Found at i:8019383 original size:21 final size:21
Alignment explanation
Indices: 8019359--8019405 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8019349 TCTCATTACT
*
8019359 TTGAACATCAAAATCACTAAC
1 TTGAACATCAAAATCACCAAC
** *
8019380 TTGAGTATCAATATCACCAAC
1 TTGAACATCAAAATCACCAAC
8019401 TTGAA
1 TTGAA
8019406 TAATAGGAGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (21 bp):
TTGAACATCAAAATCACCAAC
Found at i:8026517 original size:13 final size:13
Alignment explanation
Indices: 8026499--8026523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8026489 TAAAACAATC
8026499 TCAAACAATATTG
1 TCAAACAATATTG
8026512 TCAAACAATATT
1 TCAAACAATATT
8026524 CAAATTGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
TCAAACAATATTG
Found at i:8037956 original size:14 final size:14
Alignment explanation
Indices: 8037937--8037973 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8037927 TTTTCTTTAT
*
8037937 TTTTTATTTAGAAA
1 TTTTTATTTAAAAA
8037951 TTTTTATTTAAAAA
1 TTTTTATTTAAAAA
*
8037965 GTTTTATTT
1 TTTTTATTT
8037974 TATTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TTTTTATTTAAAAA
Found at i:8038602 original size:53 final size:53
Alignment explanation
Indices: 8038522--8038624 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
8038512 CAAGAATTTC
* *
8038522 TATATATATAACTTGAGTCATGTTTGATGTATAGAATTATAAACAAAATAGGT
1 TATATATATAACTTGAATCATGTTTGATGCATAGAATTATAAACAAAATAGGT
*
8038575 TATATATATAACTTGAATCATGTTTGATGCATAGAATTATAGACAAAATA
1 TATATATATAACTTGAATCATGTTTGATGCATAGAATTATAAACAAAATA
8038625 AGATAATAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.37
Consensus pattern (53 bp):
TATATATATAACTTGAATCATGTTTGATGCATAGAATTATAAACAAAATAGGT
Found at i:8044628 original size:14 final size:14
Alignment explanation
Indices: 8044605--8044637 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8044595 CCATTAAAGC
8044605 ATTTTTAAAAAA-T
1 ATTTTTAAAAAATT
8044618 ATTTCTTAAAAAATT
1 ATTT-TTAAAAAATT
8044633 ATTTT
1 ATTTT
8044638 AACAATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 9 0.50
15 5 0.28
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTAAAAAATT
Found at i:8044681 original size:18 final size:17
Alignment explanation
Indices: 8044647--8044679 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8044637 TAACAATTGG
8044647 ATTTCAATTTTTAAAAT
1 ATTTCAATTTTTAAAAT
*
8044664 ATTTTAATTTTTAAAA
1 ATTTCAATTTTTAAAA
8044680 ATCATATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTCAATTTTTAAAAT
Found at i:8044739 original size:24 final size:23
Alignment explanation
Indices: 8044695--8044739 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
8044685 ATTTCTTGAA
*
8044695 TTTTTTAACAATTGAATTTTAAT
1 TTTTTTAACAATTAAATTTTAAT
8044718 TTTTTTAAACAA-TAAATATTTA
1 TTTTTT-AACAATTAAAT-TTTA
8044740 GAATATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTTTTAACAATTAAATTTTAAT
Found at i:8044800 original size:19 final size:19
Alignment explanation
Indices: 8044736--8044800 Score: 64
Period size: 18 Copynumber: 3.5 Consensus size: 19
8044726 ACAATAAATA
*
8044736 TTTAGAATATTTTTTA--T
1 TTTAAAATATTTTTTATTT
*
8044753 TTTAAAAAATTAATTTTATTT
1 TTTAAAATATT--TTTTATTT
*
8044774 TTT-CAATATTTTTTATTT
1 TTTAAAATATTTTTTATTT
8044792 TTTAAAATA
1 TTTAAAATA
8044801 ATATTTCTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
17 9 0.24
18 11 0.29
19 9 0.24
20 5 0.13
21 4 0.11
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTAAAATATTTTTTATTT
Found at i:8044934 original size:37 final size:37
Alignment explanation
Indices: 8044891--8044961 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
8044881 TATTAAAAAC
*
8044891 TAAAATTTTT-TAACTTTTCTAAAAAATTAGATATTTT
1 TAAAATTTTTATAA-TTTTCTAAAAAATTAAATATTTT
* *
8044928 TAAAATTTTTATAATTTTTTAAAATATTAAATAT
1 TAAAATTTTTATAATTTTCTAAAAAATTAAATAT
8044962 AATATTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
37 27 0.90
38 3 0.10
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (37 bp):
TAAAATTTTTATAATTTTCTAAAAAATTAAATATTTT
Found at i:8045159 original size:29 final size:30
Alignment explanation
Indices: 8045113--8045199 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 30
8045103 AAATATTGGC
* * *
8045113 AAAAAAATTAATACTTTTCTAAAGAAATTTGA
1 AAAAAAATT--TACTTTTCTAAAAAAATATAA
*
8045145 AAAAAAATTTA-TTTTTTAAAAAAATATAA
1 AAAAAAATTTACTTTTCTAAAAAAATATAA
8045174 AAAAATAATTTAACGTTTT-TAAAAAA
1 AAAAA-AATTT-AC-TTTTCTAAAAAA
8045200 TCCAAAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
29 19 0.40
30 7 0.15
31 1 0.02
32 16 0.34
33 4 0.09
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAAAAATTTACTTTTCTAAAAAAATATAA
Found at i:8045845 original size:17 final size:17
Alignment explanation
Indices: 8045833--8045872 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
8045823 TATCATTTAA
8045833 ATAATATTATCATAAAT
1 ATAATATTATCATAAAT
8045850 ATAATATTA--ATAAAT
1 ATAATATTATCATAAAT
8045865 AGTAATAT
1 A-TAATAT
8045873 GATATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.32
16 6 0.27
17 9 0.41
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (17 bp):
ATAATATTATCATAAAT
Found at i:8045893 original size:14 final size:15
Alignment explanation
Indices: 8045874--8045914 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
8045864 TAGTAATATG
8045874 ATATTTAAT-TTAAA
1 ATATTTAATATTAAA
8045888 ATATTTAATATTAAA
1 ATATTTAATATTAAA
*
8045903 TTAATTTAATAT
1 AT-ATTTAATAT
8045915 ATCGTATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 9 0.38
15 6 0.25
16 9 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATTTAATATTAAA
Found at i:8046076 original size:35 final size:33
Alignment explanation
Indices: 8045994--8046080 Score: 88
Period size: 33 Copynumber: 2.5 Consensus size: 33
8045984 TTAAATATTT
* *
8045994 AATATTTATTTAAATATTTCATATTATATAATTT
1 AATATTTAATTAAATA-TTCATATTATATAATTA
*
8046028 AATA-TTAATTTAAATATTCATATTTTAT-ATTGCAA
1 AATATTTAA-TTAAATATTCATATTATATAATT---A
8046063 AATATTTAATTAAATATT
1 AATATTTAATTAAATATT
8046081 TAATATTTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
32 3 0.07
33 14 0.31
34 11 0.24
35 13 0.29
36 4 0.09
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (33 bp):
AATATTTAATTAAATATTCATATTATATAATTA
Found at i:8046126 original size:6 final size:7
Alignment explanation
Indices: 8045956--8046203 Score: 119
Period size: 7 Copynumber: 35.4 Consensus size: 7
8045946 TATTACCTTA
8045956 AATATTTT
1 AATA-TTT
8045964 AATATTT
1 AATATTT
*
8045971 AATATTA
1 AATATTT
*
8045978 AATTCATTA
1 AA-T-ATTT
8045987 AATATTT
1 AATATTT
8045994 AATATTT
1 AATATTT
*
8046001 -AT-TTA
1 AATATTT
8046006 AATATTT
1 AATATTT
*
8046013 CATA-TT
1 AATATTT
8046019 ATATAATTT
1 A-AT-ATTT
8046028 AATA-TT
1 AATATTT
*
8046034 AAT-TTA
1 AATATTT
8046040 AATA-TT
1 AATATTT
*
8046046 CATATTT
1 AATATTT
* *
8046053 TATATTGCAA
1 AATATT---T
8046063 AATATTT
1 AATATTT
*
8046070 -A-ATTA
1 AATATTT
8046075 AATATTT
1 AATATTT
8046082 AATATTTGGT
1 AATA-TT--T
* *
8046092 ATTATAT
1 AATATTT
8046099 AATATTT
1 AATATTT
*
8046106 ATTATTT
1 AATATTT
8046113 -ATATTT
1 AATATTT
*
8046119 AATATTA
1 AATATTT
*
8046126 AACTCATTA
1 AA-T-ATTT
8046135 AATATTT
1 AATATTT
*
8046142 AATGTTT
1 AATATTT
8046149 AATATTT
1 AATATTT
*
8046156 CATATTT
1 AATATTT
8046163 AATATTT
1 AATATTT
8046170 AATGA---
1 AAT-ATTT
8046175 AATATTT
1 AATATTT
8046182 AATA-TT
1 AATATTT
8046188 -ATATTT
1 AATATTT
*
8046194 AATGTTT
1 AATATTT
8046201 AAT
1 AAT
8046204 TAATTCAATT
Statistics
Matches: 185, Mismatches: 28, Indels: 55
0.69 0.10 0.21
Matches are distributed among these distances:
4 1 0.01
5 11 0.06
6 30 0.16
7 104 0.56
8 14 0.08
9 16 0.09
10 9 0.05
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (7 bp):
AATATTT
Found at i:8046180 original size:12 final size:13
Alignment explanation
Indices: 8046135--8046197 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 13
8046125 AAACTCATTA
*
8046135 AATATTTAATGTTT
1 AATATTTAATG-AT
*
8046149 AATATTTCATAT-TT
1 AATATTT-A-ATGAT
8046163 AATATTTAATGA-
1 AATATTTAATGAT
8046175 AATATTTAAT-AT
1 AATATTTAATGAT
*
8046187 TATATTTAATG
1 AATATTTAATG
8046198 TTTAATTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
11 1 0.02
12 21 0.50
13 1 0.02
14 16 0.38
15 1 0.02
16 2 0.05
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (13 bp):
AATATTTAATGAT
Found at i:8046231 original size:10 final size:10
Alignment explanation
Indices: 8046211--8046250 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
8046201 AATTAATTCA
8046211 ATTAT-TAAT
1 ATTATATAAT
8046220 ATTATATAAT
1 ATTATATAAT
*
8046230 ATT-TA-AAC
1 ATTATATAAT
8046238 ATTATATAAT
1 ATTATATAAT
8046248 ATT
1 ATT
8046251 TGACTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
8 5 0.19
9 9 0.35
10 12 0.46
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTATATAAT
Found at i:8046231 original size:52 final size:52
Alignment explanation
Indices: 8046136--8046244 Score: 127
Period size: 52 Copynumber: 2.1 Consensus size: 52
8046126 AACTCATTAA
* *
8046136 ATATTTAATGTTTAATATTTCATATTTAATATTTAATGAAATATTT-AATATT
1 ATATTTAATGTTTAATAATTCATATTTAATATTTAAT-AAATATTTAAACATT
8046188 ATATTTAATGTTTAATTAATTCA-ATTATTAATA-TT-ATATAATATTTAAACATT
1 ATATTTAATGTTTAA-TAATTCATA-T-TTAATATTTAATA-AATATTTAAACATT
8046241 ATAT
1 ATAT
8046245 AATATTTGAC
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
51 1 0.02
52 25 0.50
53 18 0.36
54 6 0.12
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (52 bp):
ATATTTAATGTTTAATAATTCATATTTAATATTTAATAAATATTTAAACATT
Found at i:8046316 original size:30 final size:30
Alignment explanation
Indices: 8046280--8046409 Score: 101
Period size: 30 Copynumber: 4.5 Consensus size: 30
8046270 TCGTATTATA
*
8046280 TAATATTTAATTAATTAACTAATTAATATT
1 TAATATTTAATTAATTAAATAATTAATATT
* * * *
8046310 TAATATTCCAATAAAATAAATAAATAATA-T
1 TAATATT-TAATTAATTAAATAATTAATATT
* * **
8046340 TAA-A-TTAA-AAATTTAATACCTAATATT
1 TAATATTTAATTAATTAAATAATTAATATT
* *
8046367 TAAT-TTTAAATTAATTAAATATTTACTATT
1 TAATATTT-AATTAATTAAATAATTAATATT
8046397 TAATA-TTAATTAA
1 TAATATTTAATTAA
8046410 ATATTTAATA
Statistics
Matches: 78, Mismatches: 15, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
26 13 0.17
27 6 0.08
28 3 0.04
29 9 0.12
30 31 0.40
31 16 0.21
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (30 bp):
TAATATTTAATTAATTAAATAATTAATATT
Found at i:8046397 original size:25 final size:23
Alignment explanation
Indices: 8046361--8046418 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 23
8046351 TTTAATACCT
8046361 AATATTTAATTTTAA-ATTAATTA
1 AATATTTAA-TTTAATATTAATTA
8046384 AATATTTACTATTTAATATTAATTA
1 AATATTTA--ATTTAATATTAATTA
8046409 AATATTTAAT
1 AATATTTAAT
8046419 AATATAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
23 10 0.31
24 5 0.16
25 17 0.53
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATTTAATTTAATATTAATTA
Found at i:8046651 original size:17 final size:17
Alignment explanation
Indices: 8046626--8046676 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
8046616 TTGTTGTTTG
8046626 AAAAAAAAACTAAAAAC
1 AAAAAAAAACTAAAAAC
* * *
8046643 AAAACAAAATTAAAAAT
1 AAAAAAAAACTAAAAAC
8046660 AAAATTAAAAA-TAAAAA
1 AAAA--AAAAACTAAAAA
8046677 GGATACCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 18 0.64
18 6 0.21
19 4 0.14
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAAAAACTAAAAAC
Found at i:8046658 original size:12 final size:12
Alignment explanation
Indices: 8046643--8046675 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8046633 AACTAAAAAC
*
8046643 AAAACAAAATTA
1 AAAATAAAATTA
8046655 AAAATAAAATTA
1 AAAATAAAATTA
8046667 AAAATAAAA
1 AAAATAAAA
8046676 AGGATACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAATAAAATTA
Found at i:8047105 original size:10 final size:10
Alignment explanation
Indices: 8047092--8047135 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
8047082 TCAAATCGAA
8047092 TTATATATTT
1 TTATATATTT
8047102 TTAT-TAGTTT
1 TTATATA-TTT
8047112 TTATATATTT
1 TTATATATTT
*
8047122 TT-TAAATTT
1 TTATATATTT
8047131 TTATA
1 TTATA
8047136 AAATAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
9 10 0.33
10 18 0.60
11 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TTATATATTT
Found at i:8054151 original size:188 final size:185
Alignment explanation
Indices: 8053416--8054739 Score: 1349
Period size: 188 Copynumber: 7.1 Consensus size: 185
8053406 TATAACAAAT
* *
8053416 TATTAAAGGCGTTTTTCAATAGAAGATGCCTTTAATAATCTCAAAATTTTTT-AAAAAAATATAT
1 TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAATC-CAAAATTTTTTAAAAAAAAT-TAT
* * * *
8053480 AGAAGACATTTATTAT-AAAAAATACCTTCAATAATTATGTACAAAAATTAAAACGAATTAGTGA
64 AGAAGGCGTTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGTGA
* * * * * *
8053544 AGGCGTTTTCCTAGAATAAATACCTTTATTAACCT-TCTTAAAATTTGAGTAATGGTA
129 AGGCATTTTCCTAGAATAAATGCCTTCACTAA-CTATCTTAAAATTTGAGTACTGATA
* * **
8053601 TATTGAAGGCGTTTTTCAATAGAAAACACCTTTAATAATCCTAAAATTTTTTAAAAAGAAATTAT
1 TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAATCC-AAAATTTTTTAAAAA-AAATTAT
** *
8053666 AGAAGATGTTTGTTATAAAAAAAAATACCTTTAATAATTATGTACAAAAATTAAAATGAATTAGT
64 AGAAGGCGTTTGTTAT--AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGT
* * * * *
8053731 GAAAGCATTTTCCTAGAATAAATACCTACACTAACCATCTTAAAATTTGAGTACCGATA
127 GAAGGCATTTTCCTAGAATAAATGCCTTCACTAACTATCTTAAAATTTGAGTACTGATA
*
8053790 TATTGAATGCATTTTTCAATAGAAGATGCCTTTAATAATCTCAAAAAATTTTTT-AAAAAAATTA
1 TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAATC-C--AAAATTTTTTAAAAAAAATTA
* *
8053854 TTGAAGGTGTTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGTG
63 TAGAAGGCGTTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGTG
* ** * *
8053919 AATGCATTTTCCTAGAATAAACACCTTCACTAACTGTCTTAAAATTTGAGTACTGGTA
128 AAGGCATTTTCCTAGAATAAATGCCTTCACTAACTATCTTAAAATTTGAGTACTGATA
* * * * *
8053977 TATTGAATGTATTTTTCAGTAGAAGATGTCTTTAATAATACCAAAATTTTTTTAAAAAAAACTAT
1 TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAAT-CCAAAA-TTTTTTAAAAAAAATTAT
*
8054042 AGAAGGCGTTTGTTATAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATTAATTAGTG
64 AGAAGGCGTTTGTTAT-AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGTG
* * *
8054107 AAAGCATTTTCCTAGAATAAATGCCTCCACTAACTATTTTAAAATTTGAGTACT-AGTA
128 AAGGCATTTTCCTAGAATAAATGCCTTCACTAACTATCTTAAAATTTGAGTACTGA-TA
* * * * * * *
8054165 TATTGAATGCGTTTTTTAGTAGAAGATGCCTTTAATAATCTTAAAATTTTCTAAAAGGAAATTAT
1 TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAATC-CAAAATTTTTTAAAA-AAAATTA-
* * ** * * *
8054230 TA-AAGGCATTTGTTATCAAAAAAATGCCTTCAATAATTATGTTTAAAATTTAAAAAGAATTATT
63 TAGAAGGCGTTTGTTAT-AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGT
* * * * * * *
8054294 GAAGGCGTTTTCTTGGAATAAACGTCTTCATTAACTATCTTAAAATTTGAGTACTAATA
127 GAAGGCATTTTCCTAGAATAAATGCCTTCACTAACTATCTTAAAATTTGAGTACTGATA
* * * **
8054353 TATTGAAGGCATTTTTTACTAGAAGACGCCTTTAATAATCCCAAAAAATTTTAGAAAAAAATTAT
1 TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAAT-CCAAAATTTTTTA-AAAAAAATTAT
* * * * * * * * ** *
8054418 TGAAGGCGTTTGTTATCAATAAATGCCTTCAATAATTATGAATAAAATTTAAAA-AAAAAATTGA
64 AGAAGGCGTTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGTGA
* * * * * * * *
8054482 AGGTATTTTTCTAGAATAAATGTCTTCACTAACCATCTTAAAATTTCAATAATGAAA
129 AGGCATTTTCCTAGAATAAATGCCTTCACTAACTATCTTAAAATTTGAGTACTGATA
* ** * * *
8054539 TATTAAAGGTGTTTTTCACT-GAAAAACT-CCTTTAATAATACCAAAA-ATTTTAAAAGAAAATT
1 TATTGAAGGCATTTTTCAATAG-AAGA-TGCCTTTAATAAT-CCAAAATTTTTTAAAA-AAAATT
* * * * * *
8054601 ATTGAATGCGTTTGTTATCAAAAAACACCTACAATAATTATGTACATAAATTAAAA-GAAATTAG
62 ATAGAAGGCGTTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATG-AATTAG
** * * * * ** * *
8054665 TGAAGGTGTTTTTCTACAATACATGCCTTCACTAA-TCATTTTAAAATTTGAACAGTGAAA
126 TGAAGGCATTTTCCTAGAATAAATGCCTTCACTAACT-ATCTTAAAATTTGAGTACTGATA
*
8054725 TATTGAAGGTATTTT
1 TATTGAAGGCATTTT
8054740 ACATTAAAAA
Statistics
Matches: 977, Mismatches: 136, Indels: 51
0.84 0.12 0.04
Matches are distributed among these distances:
184 4 0.00
185 110 0.11
186 179 0.18
187 208 0.21
188 306 0.31
189 155 0.16
190 5 0.01
191 10 0.01
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (185 bp):
TATTGAAGGCATTTTTCAATAGAAGATGCCTTTAATAATCCAAAATTTTTTAAAAAAAATTATAG
AAGGCGTTTGTTATAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAATGAATTAGTGAAG
GCATTTTCCTAGAATAAATGCCTTCACTAACTATCTTAAAATTTGAGTACTGATA
Found at i:8054473 original size:62 final size:62
Alignment explanation
Indices: 8054223--8054489 Score: 161
Period size: 62 Copynumber: 4.3 Consensus size: 62
8054213 TTCTAAAAGG
* * * **
8054223 AAATTATTAAAGGCATTTGTTATCAAAAAAATGCCTTCAATAATTATGTTTAAAATTTAAAAA
1 AAATTATTGAAGGCATTTGTTATC-AATAAACGCCTTCAATAATTATGAATAAAATTTAAAAA
* * * * * * ** ** *
8054286 GAATTATTGAAGGCGTTT-TCT-TGGAATAAACGTCTTCATTAACTAT-CTTAAAATTTGAGTAC
1 AAATTATTGAAGGCATTTGT-TAT-CAATAAACGCCTTCAATAATTATGAATAAAATTT-AAAAA
* * * * * ***
8054348 TAATATATTGAAGGCATTTTTTA-CTAGAAGACGCCTTTAATAA-TCCCAA-AAAATTTTAGAAA
1 AAAT-TATTGAAGGCATTTGTTATCAATAA-ACGCCTTCAATAATTATGAATAAAA-TTTA-AAA
8054410 A
62 A
* *
8054411 AAATTATTGAAGGCGTTTGTTATCAATAAATGCCTTCAATAATTATGAATAAAATTTAAAAA
1 AAATTATTGAAGGCATTTGTTATCAATAAACGCCTTCAATAATTATGAATAAAATTTAAAAA
* *
8054473 AAA-AATTGAAGGTATTT
1 AAATTATTGAAGGCATTT
8054490 TTCTAGAATA
Statistics
Matches: 150, Mismatches: 41, Indels: 28
0.68 0.19 0.13
Matches are distributed among these distances:
61 20 0.13
62 67 0.45
63 58 0.39
64 5 0.03
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (62 bp):
AAATTATTGAAGGCATTTGTTATCAATAAACGCCTTCAATAATTATGAATAAAATTTAAAAA
Found at i:8062620 original size:33 final size:33
Alignment explanation
Indices: 8062557--8062620 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
8062547 CGTCTCAAAT
* *
8062557 ATACAAATGCCACTAATATATCAACGTTTTTAG
1 ATACAAATGCCACTAATATAACAACATTTTTAG
*
8062590 ATACAAATGCCACTAA-AGTAACATCATTTTT
1 ATACAAATGCCACTAATA-TAACAACATTTTT
8062621 CTTATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (33 bp):
ATACAAATGCCACTAATATAACAACATTTTTAG
Found at i:8067978 original size:15 final size:16
Alignment explanation
Indices: 8067958--8067987 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8067948 TGGGATTTTT
8067958 AAAAATT-AATGATTG
1 AAAAATTCAATGATTG
8067973 AAAAATTCAATGATT
1 AAAAATTCAATGATT
8067988 ACAGAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.33
Consensus pattern (16 bp):
AAAAATTCAATGATTG
Found at i:8068261 original size:12 final size:11
Alignment explanation
Indices: 8068246--8068279 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8068236 TATTTTTTAA
8068246 TTTTTAATTTCT
1 TTTTTAATTT-T
8068258 TTTTTAATTTT
1 TTTTTAATTTT
*
8068269 TTTCTAATTTT
1 TTTTTAATTTT
8068280 GACTTCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTAATTTT
Found at i:8068279 original size:19 final size:19
Alignment explanation
Indices: 8068219--8068279 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
8068209 TTCCAAAATA
*
8068219 TTTTAATATTTTCTTTATATT
1 TTTTAAT-TTTTATTTA-ATT
*
8068240 TTTTAATTTTTAATTT-CTT
1 TTTTAATTTTT-ATTTAATT
8068259 TTTTAATTTTT-TTCTAATT
1 TTTTAATTTTTATT-TAATT
8068278 TT
1 TT
8068280 GACTTCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 17 0.50
20 4 0.12
21 10 0.29
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTAATTTTTATTTAATT
Found at i:8070599 original size:2 final size:2
Alignment explanation
Indices: 8070594--8070628 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8070584 TCTCAAACAA
*
8070594 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8070629 GAGAGAGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8075990 original size:21 final size:21
Alignment explanation
Indices: 8075965--8076012 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
8075955 CTCCTATTAT
*
8075965 TCAAGTTGGTGATACTGATAC
1 TCAAGTTGGTGATAATGATAC
8075986 TCAAGTTGGTGATAATGATAC
1 TCAAGTTGGTGATAATGATAC
8076007 TCAAGT
1 TCAAGT
8076013 GATTAGGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (21 bp):
TCAAGTTGGTGATAATGATAC
Found at i:8080075 original size:161 final size:161
Alignment explanation
Indices: 8079354--8080220 Score: 883
Period size: 161 Copynumber: 5.4 Consensus size: 161
8079344 AAGTTTATGG
* * * * * * **
8079354 TATTAAACTTATTCAAATAATTGAACTTGATTTTCATTGTTGATATGTGTGAAAAAGTCACAATT
1 TATTAAACTTGTTCGAATGATTGAACTTGATTTCCATAGTTGATATGTGTGAAAAAGTTACTGTT
* * * *
8079419 TATGTCTATTTAGGACTTTTTGTGCCATTAAAAAGTAAAAATGTAAATTTGC-AGTTATTGTTCT
66 TATGTCTGTTTAGGACTTTTTGTGCCATTAAAAAGCAAAAATGTAAAATT-CTTGTTATTGTTCT
* * *
8079483 ATTTTAACAGTTTTGATAGTTTCAATATATGA
130 ATTTTAACAGTTTGGATAGCTTCAATACATGA
* * * * * * *
8079515 TATTAAACTTGTTTGAATGATTGAACTTGATTTTCACAATTGATATATGTGAAAAAATTATTG-T
1 TATTAAACTTGTTCGAATGATTGAACTTGATTTCCATAGTTGATATGTGTGAAAAAGTTACTGTT
* * * * * *
8079579 TATGTCTGTTTAGAACTTTTTATACAATT-AAAAGTCAAAAATGCAAATTTGC-TGTTATTGTTC
66 TATGTCTGTTTAGGACTTTTTGTGCCATTAAAAAG-CAAAAATGTAAAATT-CTTGTTATTGTTC
*
8079642 TATTTTAACATTTTGGATAGCTTCAATACATGA
129 TATTTTAACAGTTTGGATAGCTTCAATACATGA
* * *
8079675 TATTAAACTTGTCCGAATGATTGAACTT-AGTTTCCATAGTTGATTTGTGTGAAAAAGAGTACTG
1 TATTAAACTTGTTCGAATGATTGAACTTGA-TTTCCATAGTTGATATGTGTGAAAAAG-TTACTG
** * * * * *
8079739 TTTACATCTATTTAGGATTTTTTGTACTATTAAAAAGCAAAAATGTAAAATTTGTTGTTATTGCT
64 TTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAAGCAAAAATGTAAAA-TTCTTGTTATTG-T
* * * *
8079804 T-TATTTTAACAATTTAGACAACTTCAATACATGA
127 TCTATTTTAACAGTTTGGATAGCTTCAATACATGA
* * *
8079838 TATTAAACTTGTTCCAAATGATTGAACTTGATTTCCACAGTTGATAAGTGTGAAAAAGTTA-TCG
1 TATTAAACTTGTT-CGAATGATTGAACTTGATTTCCATAGTTGATATGTGTGAAAAAGTTACT-G
* * * * *
8079902 TTTATGTCTGTTTAAGACTTTTTGTGCCGTTAAAAAGCAAAAAAGCAAAATTCTTGTTTTTGTTC
64 TTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAAGCAAAAATGTAAAATTCTTGTTATTGTTC
* *
8079967 TATTTTAATAGTTTGGATAGCTTTAATACATGA
129 TATTTTAACAGTTTGGATAGCTTCAATACATGA
* * * *
8080000 TATTAAACTTGTTTGAATGATTGAATTTGGTTGT-CAT-GATTTATATGTGTGAAAAAGTTACTG
1 TATTAAACTTGTTCGAATGATTGAACTTGATT-TCCATAG-TTGATATGTGTGAAAAAGTTACTG
** ** * * * *
8080063 TTTACATCTGTTTAGGACTTTTTGTGCTGTT-AAAAGGAAAAA-ATACAAATTTTATGTTATTAT
64 TTTATGTCTGTTTAGGACTTTTTGTGCCATTAAAAAGCAAAAATGTA-AAATTCT-TGTTATTGT
* * *
8080126 TCTATTTTAATAGTTTGAATAGCTTCAATACATAA
127 TCTATTTTAACAGTTTGGATAGCTTCAATACATGA
* * * * *
8080161 TATTAAACTTGTCCAAATGATTGAACTTGATTTTCACAGTTGATATGTGTAAAAAAGTTA
1 TATTAAACTTGTTCGAATGATTGAACTTGATTTCCATAGTTGATATGTGTGAAAAAGTTA
8080221 TCGTTTACTT
Statistics
Matches: 586, Mismatches: 101, Indels: 38
0.81 0.14 0.05
Matches are distributed among these distances:
159 7 0.01
160 144 0.25
161 207 0.35
162 88 0.15
163 99 0.17
164 40 0.07
165 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (161 bp):
TATTAAACTTGTTCGAATGATTGAACTTGATTTCCATAGTTGATATGTGTGAAAAAGTTACTGTT
TATGTCTGTTTAGGACTTTTTGTGCCATTAAAAAGCAAAAATGTAAAATTCTTGTTATTGTTCTA
TTTTAACAGTTTGGATAGCTTCAATACATGA
Found at i:8080364 original size:137 final size:137
Alignment explanation
Indices: 8080101--8080357 Score: 367
Period size: 137 Copynumber: 1.9 Consensus size: 137
8080091 GTTAAAAGGA
*
8080101 AAAAATACAAATTTTATGTTATTATTCTATTTTAATAGTTTGAATAGCTTCAATACATAATATTA
1 AAAAATACAAATTTTATGTTATTATTCTATTTTAACAGTTTGAATAGCTTCAATACATAATATTA
* *
8080166 AACTTGTCCAAATGATTGAACTTGATTTTCACAGTTGATATGTGTAAAAAAGTTATCGTTTACTT
66 AACTTGTCCAAATGATTGAACTTGATTTTCACAATTGATATGTATAAAAAAGTTATCGTTTACTT
8080231 CGGTTGC
131 CGGTTGC
* * * * *
8080238 AAAAATGCAAA-TTTATTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATA-T
1 AAAAATACAAATTTTA-TGTTATTATTCTATTTTAACAGTTTGAATAGCTTCAATACATAATATT
* * *
8080301 AAAGCTTGTTCGAATGATTGAACTT-AGTTTTCACAATTGATATGTATGAAAAAGTTA
65 AAA-CTTGTCCAAATGATTGAACTTGA-TTTTCACAATTGATATGTATAAAAAAGTTA
8080358 CTGTTTATGT
Statistics
Matches: 106, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
136 9 0.08
137 97 0.92
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (137 bp):
AAAAATACAAATTTTATGTTATTATTCTATTTTAACAGTTTGAATAGCTTCAATACATAATATTA
AACTTGTCCAAATGATTGAACTTGATTTTCACAATTGATATGTATAAAAAAGTTATCGTTTACTT
CGGTTGC
Found at i:8080652 original size:161 final size:161
Alignment explanation
Indices: 8080236--8081547 Score: 1174
Period size: 161 Copynumber: 8.1 Consensus size: 161
8080226 TACTTCGGTT
* * * * *
8080236 GCAAAAATGCAAATTTATTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATA-
1 GCAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATAT
* * *
8080300 TAAAGCTTGT-TCGAATGATTGAACTTAGTTTTCACA--ATTGATATGTATGAAAAAGTTACTGT
66 TAAA-CTTGTCT-GAATGATTGAACTT-GATTTC-CATGATTGATATGTGTGAAAAAGTTACCGT
* *
8080362 TTATGTCTATTTAAGACTTTTTGTGCTGTTAAAAG
127 TTATGTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
** * *
8080397 GCAGAAAGATAAAAATACAAATTGCTATTATTATTCTATTTTAACAGTTTGGATAGCTTCAATAC
1 GCA-AAA-ATGCAAAT-----TTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * *
8080462 ATGATATTAAACTTGT-TCAAATGATTGAACTTGATTTCCGTGATTAATATGTGTGAAAAAGTTA
59 ATGATATTAAACTTGTCT-GAATGATTGAACTTGATTTCCATGATTGATATGTGTGAAAAAGTTA
* *
8080526 CCGTTTATGTTTGTTT-AGAACTTTTTGTGTTGTTAAAAA
123 CCGTTTATGTCTGTTTAAG-ACTTTTTGTGCTGTTAAAAA
* * * * *
8080565 GCAAAAATGCAAACTTGTTATTATTATTCTATTTTAATAGTTTAGATAGCTTCAATTCATGATAT
1 GCAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATAT
* * * * *
8080630 TAAACTTGTTTGCATAATTGAACTT-AGTTTTCATGATTGATATGTGTGAAAAAAGTTATCGTTT
66 TAAACTTGTCTGAATGATTGAACTTGA-TTTCCATGATTGATATGTGTG-AAAAAGTTACCGTTT
* ** *
8080694 ATGTCTGTTTAAGACTTTTTATGCCATTAAAAG
129 ATGTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
* ** * * * * *
8080727 GTAAAAATATAAAATTGTTGTTATTATTTTGTTTTAACAGTTTGGATAGCCTCAATACATAATAT
1 GCAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATAT
* * * * * *
8080792 AAAACTTGTCTAAATAATTGAACTTAATTTTCATGGTTGATATGTGTGAAAAAGTTACCGTTTAT
66 TAAACTTGTCTGAATGATTGAACTTGATTTCCATGATTGATATGTGTGAAAAAGTTACCGTTTAT
* * * *
8080857 GTCTGTTTAAGATTTTTTATACCGTTAAAAA
131 GTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
* * * * * * * * * * *
8080888 ACAAAAATGAAAAATTGCTATTATTGTTCTATTTAAATAGTTAGGATAGCTTCAATACACGATAG
1 GCAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATAT
* * ** * * *
8080953 TAAACTTGTTTGAATGATTGAACTTGGTTTATAT-AGTTGATATATGTGACAAAGTTATCGTTTA
66 TAAACTTGTCTGAATGATTGAACTTGATTTCCATGA-TTGATATGTGTGAAAAAGTTACCGTTTA
** * * *
8081017 CATTTGTTTAAGACTTTTTATGCTATT-AAAA
130 TGTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
* * * * *
8081048 GATAAAAATACAAATTTGCTGTTATTATTCTGTTTTAACA-TTTGGATAGTTTCAATACATGATA
1 G-CAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATA
* * * ** * *
8081112 TTAAACTTATCTAAATGATTGAACTTGGTTTCCACCATTAATATGTGTG-AAAAGTTACTGTTTA
65 TTAAACTTGTCTGAATGATTGAACTTGATTTCCATGATTGATATGTGTGAAAAAGTTACCGTTTA
** * ** * *
8081176 CATATAATTAAGACTTTTTGTACCGTT-AAAA
130 TGTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
* * * * * * * *
8081207 GACAAAAAATGTAAATTTGTTGTTTTTGTTATATTTTAACAATTTAGACAGCTTTAATACATGAT
1 G-C-AAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGAT
* * * * * *
8081272 ATTAAAATTGTCTGAATGAGTGAACTTGATTTTCACGGTTGATATATGTGAAAAAGTTACCGTTT
64 ATTAAACTTGTCTGAATGATTGAACTTGATTTCCATGATTGATATGTGTGAAAAAGTTACCGTTT
* * * * *
8081337 ACGTCTATTTAGGACGTTTTGAGCCT-TTAAAAA
129 ATGTCTGTTTAAGACTTTTTGTG-CTGTTAAAAA
* **
8081370 GCAAAAAAGCAAATTTGTTGTTATTATTCTATTTTAATTGTTTGGATAGCTTCAATACATGATAT
1 GCAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATAT
* * * * * * *
8081435 TAAACTTGTCCGAATGATTGAACTTGGTTTTCATGGTTGATATGTGTGAAAAAGTTATCATTTAC
66 TAAACTTGTCTGAATGATTGAACTTGATTTCCATGATTGATATGTGTGAAAAAGTTACCGTTTAT
* * * * * ** *
8081500 ATTTATTTATGATTTTTTGTGCCATTAAAAG
131 GTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
*
8081531 GCAAAAATACAAATTTG
1 GCAAAAATGCAAATTTG
8081548 ATACGTGTGA
Statistics
Matches: 938, Mismatches: 188, Indels: 50
0.80 0.16 0.04
Matches are distributed among these distances:
159 38 0.04
160 95 0.10
161 485 0.52
162 168 0.18
163 15 0.02
166 6 0.01
167 10 0.01
168 117 0.12
169 4 0.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (161 bp):
GCAAAAATGCAAATTTGTTGTTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATAT
TAAACTTGTCTGAATGATTGAACTTGATTTCCATGATTGATATGTGTGAAAAAGTTACCGTTTAT
GTCTGTTTAAGACTTTTTGTGCTGTTAAAAA
Found at i:8080840 original size:323 final size:322
Alignment explanation
Indices: 8080236--8081547 Score: 1327
Period size: 323 Copynumber: 4.1 Consensus size: 322
8080226 TACTTCGGTT
* * * * * *
8080236 GCAAAAATGCAAATTTATTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATA-
1 GCAAAAATGCAAATTTGTTATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATAT
* * * *
8080300 TAAAGCTTGTTCGAATGATTGAACTTAGTTTTCACAATTGATATGTATGAAAAAGTTA-CTGTTT
66 TAAA-CTTGTTTGAATGATTGAACTTAGTTTTCACGATTGATATATGTGAAAAAGTTATC-GTTT
* * ** * *
8080364 ATGTCTATTTAAGACTTTTTGTGCTGTTAAAAGGCAGAAAGATAAAAATACAAATTGCTATTATT
129 ACGTCTATTTAAGACTTTTTATGCCATTAAAAGGCA-AAA-AT----ACA-AAATTGCTGTTATT
8080429 ATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGT-TCAAATGATTGAACT
187 ATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCT-AAATGATTGAACT
* * ***
8080493 TGATTTCCGTGATTAATATGTGTGAAAAAGTTACCGTTTATGTTTGTTT-AGAACTTTTTGTGTT
251 TGATTTCCATGATTAATATGTGTGAAAAAGTTACCGTTTATGTATGTTTAAG-ACTTTTTGTACC
8080557 GTTAAAAA
315 GTTAAAAA
* * * *
8080565 GCAAAAATGCAAACTTGTTATTATTATTCTATTTTAATAGTTTAGATAGCTTCAATTCATGATAT
1 GCAAAAATGCAAATTTGTTATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATAT
* * * *
8080630 TAAACTTGTTTGCATAATTGAACTTAGTTTTCATGATTGATATGTGTGAAAAAAGTTATCGTTTA
66 TAAACTTGTTTGAATGATTGAACTTAGTTTTCACGATTGATATATGTG-AAAAAGTTATCGTTTA
* * * * * * *
8080695 TGTCTGTTTAAGACTTTTTATGCCATTAAAAGGTAAAAATATAAAATTGTTGTTATTATTTTGTT
130 CGTCTATTTAAGACTTTTTATGCCATTAAAAGGCAAAAATACAAAATTGCTGTTATTATTCTATT
* * * * * *
8080760 TTAACAGTTTGGATAGCCTCAATACATAATATAAAACTTGTCTAAATAATTGAACTTAATTTTCA
195 TTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCTAAATGATTGAACTTGATTTCCA
* * * * *
8080825 TGGTTGATATGTGTGAAAAAGTTACCGTTTATGTCTGTTTAAGATTTTTTATACCGTTAAAAA
260 TGATTAATATGTGTGAAAAAGTTACCGTTTATGTATGTTTAAGACTTTTTGTACCGTTAAAAA
* * * * * * *
8080888 ACAAAAATGAAAAATTGCTATTATTGTTCTATTTAAATAG-TTAGGATAGCTTCAATACACGATA
1 GCAAAAATGCAAATTTGTTATTATTGTTCTATTTTAACAGTTTA-GATAGCTTCAATACATGATA
* * * *
8080952 GTAAACTTGTTTGAATGATTGAACTTGGTTTAT-A-TAGTTGATATATGTGACAAAGTTATCGTT
65 TTAAACTTGTTTGAATGATTGAACTTAGTTT-TCACGA-TTGATATATGTGAAAAAGTTATCGTT
* * * * ** * *
8081015 TACATTTGTTTAAGACTTTTTATGCTATTAAAAGATAAAAATACAAATTTGCTGTTATTATTCTG
128 TACGTCTATTTAAGACTTTTTATGCCATTAAAAGGCAAAAATACAAAATTGCTGTTATTATTCTA
* * *
8081080 TTTTAACA-TTTGGATAGTTTCAATACATGATATTAAACTTATCTAAATGATTGAACTTGGTTTC
193 TTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCTAAATGATTGAACTTGATTTC
** * ** **
8081144 CACCATTAATATGTGTG-AAAAGTTACTGTTTACATATAATTAAGACTTTTTGTACCGTT-AAAA
258 CATGATTAATATGTGTGAAAAAGTTACCGTTTATGTATGTTTAAGACTTTTTGTACCGTTAAAAA
* * * * * * *
8081207 GACAAAAAATGTAAATTTGTTGTTTTTGTTATATTTTAACAATTTAGACAGCTTTAATACATGAT
1 G-C-AAAAATGCAAATTTGTTATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGAT
* * * * *
8081272 ATTAAAATTGTCTGAATGAGTGAACTT-GATTTTCACGGTTGATATATGTGAAAAAGTTACCGTT
64 ATTAAACTTGTTTGAATGATTGAACTTAG-TTTTCACGATTGATATATGTGAAAAAGTTATCGTT
* * * * * *
8081336 TACGTCTATTTAGGACGTTTTGA-GCCTTTAAAAAGCAAAAA-AGCAAATTTGTTGTTATTATTC
128 TACGTCTATTTAAGAC-TTTTTATGCCATTAAAAGGCAAAAATA-CAAAATTGCTGTTATTATTC
** ** *
8081399 TATTTTAATTGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTT
191 TATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCTAAATGATTGAACTTGATT
* * * * * ** * * * * * *
8081464 TTCATGGTTGATATGTGTGAAAAAGTTATCATTTACATTTATTTATGATTTTTTGTGCCATTAAA
256 TCCATGATTAATATGTGTGAAAAAGTTACCGTTTATGTATGTTTAAGACTTTTTGTACCGTTAAA
*
8081529 AG
321 AA
*
8081531 GCAAAAATACAAATTTG
1 GCAAAAATGCAAATTTG
8081548 ATACGTGTGA
Statistics
Matches: 823, Mismatches: 141, Indels: 45
0.82 0.14 0.04
Matches are distributed among these distances:
319 4 0.00
320 38 0.05
321 207 0.25
322 166 0.20
323 251 0.30
324 11 0.01
328 2 0.00
329 95 0.12
330 48 0.06
331 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (322 bp):
GCAAAAATGCAAATTTGTTATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATAT
TAAACTTGTTTGAATGATTGAACTTAGTTTTCACGATTGATATATGTGAAAAAGTTATCGTTTAC
GTCTATTTAAGACTTTTTATGCCATTAAAAGGCAAAAATACAAAATTGCTGTTATTATTCTATTT
TAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCTAAATGATTGAACTTGATTTCCAT
GATTAATATGTGTGAAAAAGTTACCGTTTATGTATGTTTAAGACTTTTTGTACCGTTAAAAA
Found at i:8080920 original size:789 final size:787
Alignment explanation
Indices: 8079463--8081543 Score: 2140
Period size: 789 Copynumber: 2.6 Consensus size: 787
8079453 GTAAAAATGT
* * * *
8079463 AAATTTGCAGTTATTGTTCTATTTTAACAGTTTTGATAGTTTCAATATATGATATTAAACTTGTT
1 AAATTTACTGTTATTGTTCTATTTTAACAGTTTGGATAGTTTCAATACATGATATTAAACTTGTT
* * * * *
8079528 TGAATGATTGAACTTGATTTTCACAATTGATATATGTGAAAAAATTATTG-TTATGTCTGTTT-A
66 CGAATGATTGAACTTG-TTTTCACAATTGATATGTGTGAAAAAGTTACTGTTTATGTCTATTTAA
* * * ** *
8079591 GAACTTTTTATACAATTAAAAGTCAAAAATGCAAAT---TTGCTGTTATTGTTCTATTTTAACAT
130 G-ACTTTTTGTACAGTTAAAAGGCAAAAATAAAAATAAATTGCTGTTATTGTTCTATTTTAACAA
* *
8079653 TTTGGATAGCTTCAATACATGATATTAAACTTGTCCGAATGATTGAACTT-AGTTTCCAT-AGTT
194 TTTGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTGAGTTTCCGTGA-TT
* * * * * *
8079716 GATTTGTGTGAAAAAGAGTACTGTTTACATCTATTTAGGATTTTTTGTACTATTAAAAAGCAAAA
258 GATATGTGTGAAAAAG-TTACCGTTTACGTCTATTTAGGACTTTTTGTGCT-TTAAAAAGCAAAA
* * * * * *
8079781 ATGTAAAATTTGTTGTTATTGCTT-TATTTTAACAATTTAGACAACTTCAATACATGATATTAAA
321 ATG-CAAATTTGTTGTTATT-ATTCTATTTTAATAGTTTAGATAGCTTCAATACATGATATTAAA
* * * *
8079845 CTTG-TTCCAAATGATTGAACTTGATTTCCA-CAGTTGATAAGTGTGAAAAAGTTATCGTTTATG
384 CTTGTTTGC--ATGATTGAACTTG-TTTTCATGA-TTGATATGTGTGAAAAAGTTATCGTTTATG
* * * *
8079908 TCTGTTTAAGACTTTTTGTGCCGTTAAAAAGCAAAAA-AGCAAAATTCTTGTTTTTGTTCTATTT
445 TCTGTTTAAGACTTTTTGTGCCATTAAAAGGCAAAAATAGCAAAATTCTTGTTATTATTCTATTT
* * * * * * * * * **
8079972 TAATAGTTTGGATAGCTTTAATACATGATATTAAACTTGTTTGAATGATTGAATTTGGTTGTCAT
510 TAACAGTTTGGATAGCCTCAATACATAATATAAAACTTGTCTAAATAATTGAACTTAATTGTCAT
* * * * * * *
8080037 GATTTATATGTGTGAAAAAGTTACTGTTTACATCTGTTTAGGACTTTTTGTGCTGTTAAAAGGAA
575 GATTGATATGTGTGAAAAAGTTACCGTTTACATCTGTTTAAGACTTTTTATACCGTTAAAAGAAA
* * * * * *
8080102 AAAATACAAATTTTATGTTATTATTCTATTTTAATAGTTTGAATAGCTTCAATACATAATATTAA
640 AAAATAAAAATTCTA-GTTATTATTCTATTTAAATAGTTAGAATAGCTTCAATACACAATAGTAA
*
8080167 ACTTGTCCAAATGATTGAACTTGATTT-TCACAGTTGATATGTGTAAAAAAGTTATCGTTTAC-T
704 ACTTGTCCAAATGATTGAACTTGATTTAT-ACAGTTGATATATGTAAAAAAGTTATCGTTTACAT
*
8080230 TCG-G-T-TGC-AAAAATGC
768 TCGTGTTATGCAAAAAATAC
* * *
8080246 AAATTTATTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTT-AATACATAATA-TAAAGCTTG
1 AAATTTACTGTTATTGTTCTATTTTAACAGTTTGGATAG-TTTCAATACATGATATTAAA-CTTG
*
8080309 TTCGAATGATTGAACTTAGTTTTCACAATTGATATGTATGAAAAAGTTACTGTTTATGTCTATTT
64 TTCGAATGATTGAACTT-GTTTTCACAATTGATATGTGTGAAAAAGTTACTGTTTATGTCTATTT
* * * *
8080374 AAGACTTTTTGTGCTGTTAAAAGGCAGAAAGATAAAAATACAAATTGCTATTATTATTCTATTTT
128 AAGACTTTTTGTACAGTTAAAAGGCA-AAA-ATAAAAAT--AAATTGCTGTTATTGTTCTATTTT
* *
8080439 AACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCAAATGATTGAACTTGA-TTTCCGT
189 AACAATTTGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTGAGTTTCCGT
* * * * * *
8080503 GATTAATATGTGTGAAAAAGTTACCGTTTATGTTTGTTTAGAACTTTTTGTGTTGTTAAAAAGCA
254 GATTGATATGTGTGAAAAAGTTACCGTTTACGTCTATTTAGGACTTTTTGTGCT-TTAAAAAGCA
* * *
8080568 AAAATGCAAACTTGTTATTATTATTCTATTTTAATAGTTTAGATAGCTTCAATTCATGATATTAA
318 AAAATGCAAATTTGTTGTTATTATTCTATTTTAATAGTTTAGATAGCTTCAATACATGATATTAA
*
8080633 ACTTGTTTGCATAATTGAACTTAGTTTTCATGATTGATATGTGTGAAAAAAGTTATCGTTTATGT
383 ACTTGTTTGCATGATTGAACTT-GTTTTCATGATTGATATGTGTG-AAAAAGTTATCGTTTATGT
* * * * * *
8080698 CTGTTTAAGACTTTTTATGCCATTAAAAGGTAAAAATA-TAAAATTGTTGTTATTATTTTGTTTT
446 CTGTTTAAGACTTTTTGTGCCATTAAAAGGCAAAAATAGCAAAATTCTTGTTATTATTCTATTTT
*
8080762 AACAGTTTGGATAGCCTCAATACATAATATAAAACTTGTCTAAATAATTGAACTTAATTTTCATG
511 AACAGTTTGGATAGCCTCAATACATAATATAAAACTTGTCTAAATAATTGAACTTAATTGTCATG
* ** *
8080827 GTTGATATGTGTGAAAAAGTTACCGTTTATGTCTGTTTAAGATTTTTTATACCGTTAAAA-AACA
576 ATTGATATGTGTGAAAAAGTTACCGTTTACATCTGTTTAAGACTTTTTATACCGTTAAAAGAA-A
* * *
8080891 AAAATGAAAAATTGCTA-TTATTGTTCTATTTAAATAGTTAGGATAGCTTCAATACACGATAGTA
640 AAAAT-AAAAATT-CTAGTTATTATTCTATTTAAATAGTTAGAATAGCTTCAATACACAATAGTA
*** * * * *
8080955 AACTTGTTTGAATGATTGAACTTGGTTTATATAGTTGATATATGTGACAAAGTTATCGTTTACAT
703 AACTTGTCCAAATGATTGAACTTGATTTATACAGTTGATATATGTAAAAAAGTTATCGTTTACAT
*
8081020 TTGTTTAAGACTTTTTATGCTATTAAAAGATAAAAATAC
768 TCG--T--G-----TTATGC---------A-AAAAATAC
* * * *
8081059 AAATTTGCTGTTATTATTCTGTTTTAACA-TTTGGATAGTTTCAATACATGATATTAAACTT-AT
1 AAATTTACTGTTATTGTTCTATTTTAACAGTTTGGATAGTTTCAATACATGATATTAAACTTGTT
* * * * ** * *
8081122 CTAAATGATTGAACTTGGTTTCCACCATTAATATGTGTG-AAAAGTTACTGTTTACATATAATTA
66 C-GAATGATTGAACTT-GTTTTCACAATTGATATGTGTGAAAAAGTTACTGTTTATGTCTATTTA
* * ** * * *
8081186 AGACTTTTTGTACCGTTAAAA-G-ACAAA-AAATGTAAATTTGTTGTTTTTGTTATATTTTAACA
129 AGACTTTTTGTACAGTTAAAAGGCAAAAATAAAAATAAA-TTGCTGTTATTGTTCTATTTTAACA
* * * * * *
8081248 ATTTAGACAGCTTTAATACATGATATTAAAATTG-TCTGAATGAGTGAACTTGATTTTCACG-G-
193 ATTTGGATAGCTTCAATACATGATATTAAACTTGTTC-GAATGATTGAACTTGAGTTTC-CGTGA
* * *
8081310 TTGATATATGTGAAAAAGTTACCGTTTACGTCTATTTAGGACGTTTTGAGCCTTTAAAAAGCAAA
256 TTGATATGTGTGAAAAAGTTACCGTTTACGTCTATTTAGGACTTTTTGTG-CTTTAAAAAGCAAA
* * *
8081375 AAAGCAAATTTGTTGTTATTATTCTATTTTAATTGTTTGGATAGCTTCAATACATGATATTAAAC
320 AATGCAAATTTGTTGTTATTATTCTATTTTAATAGTTTAGATAGCTTCAATACATGATATTAAAC
** * * * ** * *
8081440 TTGTCCGAATGATTGAACTTGGTTTTCATGGTTGATATGTGTGAAAAAGTTATCATTTACATTTA
385 TTGTTTGCATGATTGAACTT-GTTTTCATGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTG
* *
8081505 TTTATGATTTTTTGTGCCATTAAAAGGCAAAAATA-CAAA
449 TTTAAGACTTTTTGTGCCATTAAAAGGCAAAAATAGCAAA
8081544 TTTGATACGT
Statistics
Matches: 1072, Mismatches: 170, Indels: 91
0.80 0.13 0.07
Matches are distributed among these distances:
782 4 0.00
783 92 0.09
784 33 0.03
785 5 0.00
786 6 0.01
788 30 0.03
789 327 0.31
790 54 0.05
791 95 0.09
792 2 0.00
795 1 0.00
801 1 0.00
802 3 0.00
804 56 0.05
805 213 0.20
806 10 0.01
807 3 0.00
808 2 0.00
809 1 0.00
810 1 0.00
811 45 0.04
812 53 0.05
813 35 0.03
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.42
Consensus pattern (787 bp):
AAATTTACTGTTATTGTTCTATTTTAACAGTTTGGATAGTTTCAATACATGATATTAAACTTGTT
CGAATGATTGAACTTGTTTTCACAATTGATATGTGTGAAAAAGTTACTGTTTATGTCTATTTAAG
ACTTTTTGTACAGTTAAAAGGCAAAAATAAAAATAAATTGCTGTTATTGTTCTATTTTAACAATT
TGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTGAGTTTCCGTGATTGAT
ATGTGTGAAAAAGTTACCGTTTACGTCTATTTAGGACTTTTTGTGCTTTAAAAAGCAAAAATGCA
AATTTGTTGTTATTATTCTATTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTT
GCATGATTGAACTTGTTTTCATGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTGTTTAAGA
CTTTTTGTGCCATTAAAAGGCAAAAATAGCAAAATTCTTGTTATTATTCTATTTTAACAGTTTGG
ATAGCCTCAATACATAATATAAAACTTGTCTAAATAATTGAACTTAATTGTCATGATTGATATGT
GTGAAAAAGTTACCGTTTACATCTGTTTAAGACTTTTTATACCGTTAAAAGAAAAAAATAAAAAT
TCTAGTTATTATTCTATTTAAATAGTTAGAATAGCTTCAATACACAATAGTAAACTTGTCCAAAT
GATTGAACTTGATTTATACAGTTGATATATGTAAAAAAGTTATCGTTTACATTCGTGTTATGCAA
AAAATAC
Found at i:8081419 original size:482 final size:479
Alignment explanation
Indices: 8080238--8081547 Score: 1432
Period size: 482 Copynumber: 2.7 Consensus size: 479
8080228 CTTCGGTTGC
* *
8080238 AAAAATGCAAATTTATTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATATAA
1 AAAAATGTAAATTTGTTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATATAA
* ** * *
8080303 AGCTTGT-TCGAATGATTGAACTTAGTTTTCACAATTGATATGTATGAAAAAGTTACTGTTTATG
66 A-ATTGTCT-GAATGATTGAACTTA-TTTTCACGGTTGATATGTGTGAAAAAGTTACCGTTTATG
* *
8080367 TCTATTTAAGACTTTTTGTG-CTGTTAAAAGGCAGAAAGATA-AAAATACAAATTGCTATTATTA
128 TCTATTTAAGACTTTTTGAGCCT-TTAAAAAGCA-AAA-A-AGAAAAT-----TTGCTATTATTA
* *
8080430 TTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCAAATGATTGAACTTG
184 TTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTG
* ** * * ** * *
8080495 ATTTCCGTGATTAATATGTGTGAAAAAGTTACCGTTTATGTTTGTTT-AGAACTTTTTGTGTTGT
249 GTTT-TATG-TTGATATGTGTGAAAAAGTTATCGTTTACATTTGTTTAAG-ACTTTTTGTGCTAT
* * * * *
8080559 TAAAA-AGCAAAAATGCAAACTTGTTATTATTATTCTATTTTAATAGTTTAGATAGCTTCAATTC
311 TAAAAGA-CAAAAATACAAATTTGCTATTATTATTCTATTTTAACAGTTTAGATAGCTTCAATAC
* * ** * ** *
8080623 ATGATATTAAACTTGTTTGCATAATTGAACTTAGTTTTCATGATTGATATGTGTGAAAAAAGTTA
375 ATGATATTAAACTTATCTAAATAATTGAACTTAGTTTCCACCATTAATATGTGTG-AAAAAGTTA
** * ** * **
8080688 TCGTTTATGTCTGTTTAAGACTTTTTATGCCATTAAAAGGT
439 TCGTTTACATATAATTAAGACTTTTTATACCATTAAAAGCA
* * * * * *
8080729 AAAAATATAAAATTGTTGTTATTATTTTGTTTTAACAGTTTGGATAGCCTCAATACATAATATAA
1 AAAAATGTAAATTTGTTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATATAA
* * *
8080794 AACTTGTCTAAATAATTGAACTTAATTTTCATGGTTGATATGTGTGAAAAAGTTACCGTTTATGT
66 AA-TTGTCTGAATGATTGAACTT-ATTTTCACGGTTGATATGTGTGAAAAAGTTACCGTTTATGT
* * * * * * * * *
8080859 CTGTTTAAGA-TTTTTTATACCGTTAAAAAACAAAAATGAAAAATTGCTATTATTGTTCTATTTA
129 CTATTTAAGACTTTTTGA-GCCTTTAAAAAGCAAAAAAGAAAATTTGCTATTATTATTCTATTTT
* * * *
8080923 AATAGTTAGGATAGCTTCAATACACGATAGTAAACTTGTTTGAATGATTGAACTTGGTTTATATA
193 AATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTGGTTT-TAT-
* * * *
8080988 GTTGATATATGTGACAAAGTTATCGTTTACATTTGTTTAAGACTTTTTATGCTATTAAAAGATAA
256 GTTGATATGTGTGAAAAAGTTATCGTTTACATTTGTTTAAGACTTTTTGTGCTATTAAAAGACAA
* * * *
8081053 AAATACAAATTTGCTGTTATTATTCTGTTTTAACA-TTTGGATAGTTTCAATACATGATATTAAA
321 AAATACAAATTTGCTATTATTATTCTATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAA
* *
8081117 CTTATCTAAATGATTGAACTTGGTTTCCACCATTAATATGTGTG-AAAAGTTA-CTGTTTACATA
386 CTTATCTAAATAATTGAACTTAGTTTCCACCATTAATATGTGTGAAAAAGTTATC-GTTTACATA
* *
8081180 TAATTAAGACTTTTTGTACCGTTAAAAGACA
450 TAATTAAGACTTTTTATACCATTAAAAG-CA
* * * * * *
8081211 AAAAATGTAAATTTGTTGTTTTTGTTATATTTTAACAATTTAGACAGCTTTAATACATGATATTA
1 AAAAATGTAAATTTGTTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATA-TA
* * *
8081276 AAATTGTCTGAATGAGTGAACTTGATTTTCACGGTTGATATATGTGAAAAAGTTACCGTTTACGT
65 AAATTGTCTGAATGATTGAACTT-ATTTTCACGGTTGATATGTGTGAAAAAGTTACCGTTTATGT
* * * * *
8081341 CTATTTAGGACGTTTTGAGCCTTTAAAAAGCAAAAAAGCAAATTTGTTGTTATTATTCTATTTTA
129 CTATTTAAGACTTTTTGAGCCTTTAAAAAGCAAAAAAGAAAATTTGCTATTATTATTCTATTTTA
* *
8081406 ATTGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCATGG
194 ATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTGGTTTT-AT-G
* * * * * *
8081471 TTGATATGTGTGAAAAAGTTATCATTTACATTTATTTATGATTTTTTGTGCCATTAAAAGGCAAA
257 TTGATATGTGTGAAAAAGTTATCGTTTACATTTGTTTAAGACTTTTTGTGCTATTAAAAGACAAA
8081536 AATACAAATTTG
322 AATACAAATTTG
8081548 ATACGTGTGA
Statistics
Matches: 679, Mismatches: 126, Indels: 37
0.81 0.15 0.04
Matches are distributed among these distances:
480 1 0.00
481 38 0.06
482 273 0.40
483 70 0.10
484 151 0.22
485 4 0.01
489 5 0.01
490 8 0.01
491 126 0.19
492 3 0.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (479 bp):
AAAAATGTAAATTTGTTGTTATTGTTTTATTTTAACAGTTTGGATAGCTTTAATACATAATATAA
AATTGTCTGAATGATTGAACTTATTTTCACGGTTGATATGTGTGAAAAAGTTACCGTTTATGTCT
ATTTAAGACTTTTTGAGCCTTTAAAAAGCAAAAAAGAAAATTTGCTATTATTATTCTATTTTAAT
AGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCGAATGATTGAACTTGGTTTTATGTTGA
TATGTGTGAAAAAGTTATCGTTTACATTTGTTTAAGACTTTTTGTGCTATTAAAAGACAAAAATA
CAAATTTGCTATTATTATTCTATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTAT
CTAAATAATTGAACTTAGTTTCCACCATTAATATGTGTGAAAAAGTTATCGTTTACATATAATTA
AGACTTTTTATACCATTAAAAGCA
Found at i:8083013 original size:11 final size:11
Alignment explanation
Indices: 8082997--8083031 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
8082987 AATTTTTTAG
8082997 TGACATTTATA
1 TGACATTTATA
8083008 TGACATTTATA
1 TGACATTTATA
8083019 TGACATTTATA
1 TGACATTTATA
8083030 TG
1 TG
8083032 TGGAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (11 bp):
TGACATTTATA
Found at i:8083396 original size:17 final size:15
Alignment explanation
Indices: 8083370--8083412 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
8083360 AAAAATATTG
*
8083370 AAAATAAAAATTAACC
1 AAAATCAAAATT-ACC
*
8083386 AAAAATCAAAATTATC
1 -AAAATCAAAATTACC
8083402 AAAATCAAAAT
1 AAAATCAAAAT
8083413 CAAAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 2 0.08
17 11 0.46
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATCAAAATTACC
Found at i:8085962 original size:20 final size:21
Alignment explanation
Indices: 8085923--8085962 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8085913 AAAAATTAAA
**
8085923 AAAATATTCTAAAATTTTTTG
1 AAAATATTCTAAAAAATTTTG
8085944 AAAA-ATTCTAAAAAATTTT
1 AAAATATTCTAAAAAATTTT
8085963 CTTTGCTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (21 bp):
AAAATATTCTAAAAAATTTTG
Found at i:8087512 original size:51 final size:50
Alignment explanation
Indices: 8087457--8087561 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
8087447 GGAATATCCT
** * * *
8087457 AACTCTTTGGTGAGTTCTCAATATTTATTAAACAAATTTTAAGATTATCTC
1 AACTCTTTGGTGAAATCTCAAAAATT-TTAAACAAATTTTAAGATCATCTC
* * *
8087508 AACTCTTTGGTGAAATCTTAAAAATTTTGAACAAGTTTTAAGATCATCTC
1 AACTCTTTGGTGAAATCTCAAAAATTTTAAACAAATTTTAAGATCATCTC
8087558 AACT
1 AACT
8087562 TTTTAACAAG
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
50 25 0.54
51 21 0.46
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.40
Consensus pattern (50 bp):
AACTCTTTGGTGAAATCTCAAAAATTTTAAACAAATTTTAAGATCATCTC
Found at i:8089134 original size:3 final size:3
Alignment explanation
Indices: 8089128--8089165 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8089118 TTTTTTTTGT
8089128 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8089166 TAAACAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8090082 original size:26 final size:25
Alignment explanation
Indices: 8090048--8090097 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
8090038 AAAATATTAA
*
8090048 AAATTATTTATTATTAAAGTATATTG
1 AAATGATTTATTATTAAAGT-TATTG
8090074 AAATGATTTATTATTAAAGTTATT
1 AAATGATTTATTATTAAAGTTATT
8090098 AATATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (25 bp):
AAATGATTTATTATTAAAGTTATTG
Found at i:8090139 original size:37 final size:34
Alignment explanation
Indices: 8090096--8090189 Score: 104
Period size: 34 Copynumber: 2.7 Consensus size: 34
8090086 ATTAAAGTTA
8090096 TTAATATTAAAAAATAATTATATTA-TAATAATAATAT
1 TTAATATT--AAAAT-ATTATATTATTAATAA-AATAT
*
8090133 TTAATATTAAAATATTATATTATTATTAAAATAT
1 TTAATATTAAAATATTATATTATTAATAAAATAT
*
8090167 TTAA-AATAAAACTATT-TATTATT
1 TTAATATTAAAA-TATTATATTATT
8090190 TTTATATTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
33 13 0.25
34 22 0.42
35 10 0.19
37 8 0.15
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (34 bp):
TTAATATTAAAATATTATATTATTAATAAAATAT
Found at i:8090148 original size:15 final size:15
Alignment explanation
Indices: 8090128--8090189 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
8090118 TTATAATAAT
8090128 AATATTTAATATTAA
1 AATATTTAATATTAA
8090143 AATATTATATTATTATTAA
1 AATATT-TA--A-TATTAA
*
8090162 AATATTTAA-AATAA
1 AATATTTAATATTAA
*
8090176 AACTATTTATTATT
1 AA-TATTTAATATT
8090190 TTTATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
14 6 0.16
15 12 0.32
16 5 0.13
18 3 0.08
19 12 0.32
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATTTAATATTAA
Found at i:8090280 original size:21 final size:21
Alignment explanation
Indices: 8090253--8090301 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
8090243 ATTTTCATTA
8090253 ATATTAAAATAGTAATA-TTT
1 ATATTAAAATAGTAATATTTT
* *
8090273 ATTATTAAAATATTTATATTTT
1 A-TATTAAAATAGTAATATTTT
8090295 ATATTAA
1 ATATTAA
8090302 CAGTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATATTAAAATAGTAATATTTT
Found at i:8090435 original size:27 final size:27
Alignment explanation
Indices: 8090383--8090435 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
8090373 AATACCTTAA
* **
8090383 TAAATAAAAATATAAAATTATATATTT
1 TAAACAAAAATATAAAAAAATATATTT
8090410 TAAACAAAAATAATAAAAAAAT-TATT
1 TAAACAAAAAT-ATAAAAAAATATATT
8090436 AAAAATATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (27 bp):
TAAACAAAAATATAAAAAAATATATTT
Found at i:8090502 original size:42 final size:42
Alignment explanation
Indices: 8090455--8090559 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
8090445 CATATTAAGA
8090455 AAAAATATTATTATATTATTTCA-CATTAATTATTAAAATAAT
1 AAAAATATTATTATATTATTT-ATCATTAATTATTAAAATAAT
* * *
8090497 AAAAATATTATTATA-TATGTTATTATTTATTATTAAGATAAT
1 AAAAATATTATTATATTAT-TTATCATTAATTATTAAAATAAT
*
8090539 AATATAATACTATT-TATTATT
1 AA-A-AATATTATTATATTATT
8090560 AAAATATTAA
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
41 4 0.07
42 35 0.65
43 4 0.07
44 11 0.20
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.49
Consensus pattern (42 bp):
AAAAATATTATTATATTATTTATCATTAATTATTAAAATAAT
Found at i:8090683 original size:18 final size:20
Alignment explanation
Indices: 8090662--8090698 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8090652 TTTAATTAAA
8090662 ATTAA-ATAA-AATATTTTT
1 ATTAATATAATAATATTTTT
8090680 ATTAATATAATAATATTTT
1 ATTAATATAATAATATTTT
8090699 AAATTGAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTAATATAATAATATTTTT
Found at i:8092931 original size:22 final size:21
Alignment explanation
Indices: 8092885--8092931 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
8092875 AAGATTACGT
* *
8092885 TTTTAAAATAAAAAAATTTTT
1 TTTTAAAATAAAAAAATATTA
8092906 TTTTAAATATGAAAAAAA-ATTA
1 TTTTAAA-AT-AAAAAAATATTA
8092928 TTTT
1 TTTT
8092932 TCAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 7 0.32
22 8 0.36
23 7 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TTTTAAAATAAAAAAATATTA
Found at i:8092938 original size:25 final size:25
Alignment explanation
Indices: 8092810--8092938 Score: 65
Period size: 24 Copynumber: 5.2 Consensus size: 25
8092800 AATCCTCACA
* *
8092810 AAAATTATGATAAAAAACATGATTTTTTT
1 AAAA-TATGA-AAAAAA-ATTA-TTTTTC
* *
8092839 AAAAGATGAAAAAAAATCATTTTTC
1 AAAATATGAAAAAAAATTATTTTTC
* * * *
8092864 ATAAT-TCAACAAAGATTACGTTTTT-
1 AAAATATGAAAAAAAATTA--TTTTTC
*
8092889 -AAA-AT--AAAAAAATT-TTTTTT
1 AAAATATGAAAAAAAATTATTTTTC
*
8092909 TAAATATGAAAAAAAATTATTTTTC
1 AAAATATGAAAAAAAATTATTTTTC
8092934 AAAAT
1 AAAAT
8092939 TTAACATAGA
Statistics
Matches: 77, Mismatches: 14, Indels: 22
0.68 0.12 0.19
Matches are distributed among these distances:
19 5 0.06
21 3 0.04
22 9 0.12
24 21 0.27
25 17 0.22
26 8 0.10
27 6 0.08
28 4 0.05
29 4 0.05
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (25 bp):
AAAATATGAAAAAAAATTATTTTTC
Found at i:8093069 original size:113 final size:111
Alignment explanation
Indices: 8092884--8093184 Score: 299
Period size: 115 Copynumber: 2.7 Consensus size: 111
8092874 AAAGATTACG
* * *
8092884 TTTTTAAAATAAAAAAATTTTTT-TT-TAAATATGAAAAAAAATTATTTTTCA-AAATTTAACAT
1 TTTTTAAGATAAAAAAATTTTTTGTTGTAAATATG-AAAAAAA-TATTTTTCATAAATTCAACAA
* *
8092946 AGATGATATTTTAAAGATAGAAACA-CAATCATTATTG-AAAAGATAATA
64 AGACGATATTTT-AAGATAGAAA-AGCAATCATTATTGAAAAAAATAATA
* * *
8092994 TTTTTAAGATAAAAACATTGTCTTTGTTGTAAACATGAAAAAAATATTTTTCATAAATTCGACAA
1 TTTTTAAGATAAAAAAATT-T-TTTGTTGTAAATATGAAAAAAATATTTTTCATAAATTCAACAA
* * * * *
8093059 AGACGATATTTCTTAGATAGAAAATGCATTCTTTGTTGAAAAAAATGATA
64 AGACGATATTT-TAAGATAGAAAA-GCAATCATTATTGAAAAAAATAATA
* * * * *
8093109 TTTCTAAGATAAAAATATATTTTTTGTTGAAAATATGAAAAATATATTCTTC-TAAATTCAATAA
1 TTTTTAAGATAAAAA-A-ATTTTTTGTTGTAAATATGAAAAAAATATTTTTCATAAATTCAACAA
*
8093173 AGACAATATTTT
64 AGACGATATTTT
8093185 TAAAATAAAG
Statistics
Matches: 158, Mismatches: 22, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
110 17 0.11
111 1 0.01
112 13 0.08
113 37 0.23
114 37 0.23
115 49 0.31
116 1 0.01
117 3 0.02
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (111 bp):
TTTTTAAGATAAAAAAATTTTTTGTTGTAAATATGAAAAAAATATTTTTCATAAATTCAACAAAG
ACGATATTTTAAGATAGAAAAGCAATCATTATTGAAAAAAATAATA
Found at i:8093136 original size:41 final size:42
Alignment explanation
Indices: 8093063--8093141 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
8093053 CGACAAAGAC
* *
8093063 GATATTTCTTAGATAGAAAATGCATTCTTTGTTGAAAAAAAT
1 GATATTTCTAAGATAGAAAATACATTCTTTGTTGAAAAAAAT
* *
8093105 GATATTTCTAAGATA-AAAATATATTTTTTGTTGAAAA
1 GATATTTCTAAGATAGAAAATACATTCTTTGTTGAAAA
8093142 TATGAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 19 0.58
42 14 0.42
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.41
Consensus pattern (42 bp):
GATATTTCTAAGATAGAAAATACATTCTTTGTTGAAAAAAAT
Found at i:8093200 original size:114 final size:114
Alignment explanation
Indices: 8092991--8093214 Score: 267
Period size: 115 Copynumber: 2.0 Consensus size: 114
8092981 TGAAAAGATA
* * * *
8092991 ATATTTTTAAGATAAAAACATTGTCTTTGTTGTAAACATGAAAAAAATATTTTTCATAAATTCGA
1 ATATTTCTAAGATAAAAACATTGTCTTTGTTGAAAACATGAAAAAAATATTCTTCATAAATTCAA
* * * *
8093056 CAAAGACGATATTTCTTAGATAGAAAATGCATTCTTTGTTGAAAAAAATG
66 CAAAGACAATATTTCTTAAATAGAAAATGCAATATTTGTT-AAAAAAATG
* * * *
8093106 ATATTTCTAAGATAAAAATATAT-TTTTTGTTGAAAATATGAAAAATATATTCTTC-TAAATTCA
1 ATATTTCTAAGATAAAAACAT-TGTCTTTGTTGAAAACATGAAAAAAATATTCTTCATAAATTCA
*
8093169 ATAAAGACAATATTT-TTAAAATA-AAGAATGCAATATTTGTTAAAAA
65 ACAAAGACAATATTTCTT-AAATAGAA-AATGCAATATTTGTTAAAAA
8093215 TATAAAAAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
113 9 0.10
114 37 0.40
115 46 0.49
116 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.38
Consensus pattern (114 bp):
ATATTTCTAAGATAAAAACATTGTCTTTGTTGAAAACATGAAAAAAATATTCTTCATAAATTCAA
CAAAGACAATATTTCTTAAATAGAAAATGCAATATTTGTTAAAAAAATG
Found at i:8093589 original size:18 final size:18
Alignment explanation
Indices: 8093522--8093590 Score: 63
Period size: 18 Copynumber: 4.0 Consensus size: 18
8093512 TGAAAAAAAC
* *
8093522 GTGTTATTCATGTGTTAT
1 GTGTTATTCATATATTAT
* *
8093540 GTGTTATTTATATATCA-
1 GTGTTATTCATATATTAT
*
8093557 GTGTTA-T-AAATATTAT
1 GTGTTATTCATATATTAT
*
8093573 TTGTTATTCATATATTAT
1 GTGTTATTCATATATTAT
8093591 CAAGAACAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
15 6 0.15
16 6 0.15
17 7 0.17
18 21 0.52
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.55
Consensus pattern (18 bp):
GTGTTATTCATATATTAT
Found at i:8093865 original size:26 final size:24
Alignment explanation
Indices: 8093836--8093885 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
8093826 AATATTTTAT
8093836 TGATCACATGTAATTTTCATTTAATG
1 TGATCA-ATG-AATTTTCATTTAATG
* *
8093862 TGATCAATGATTTTTTATTTAATG
1 TGATCAATGAATTTTCATTTAATG
8093886 AATAAAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 13 0.59
25 3 0.14
26 6 0.27
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (24 bp):
TGATCAATGAATTTTCATTTAATG
Found at i:8100958 original size:2 final size:2
Alignment explanation
Indices: 8100947--8100987 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
8100937 CAAATTGGTG
* *
8100947 AT AT -T AT AT AT AT AT AT AT AC AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8100988 CCACTAATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8108735 original size:2 final size:2
Alignment explanation
Indices: 8108728--8108757 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8108718 GACAAACACA
8108728 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8108758 CTTTAGTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8111230 original size:24 final size:23
Alignment explanation
Indices: 8111203--8111247 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
8111193 GACATTACAG
8111203 TTATTAAA-ACTTAAATTTTTAAAT
1 TTATTAAATA-TT-AATTTTTAAAT
8111227 TTATTAAATATTAATTTTTAA
1 TTATTAAATATTAATTTTTAA
8111248 GAGATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.45
24 10 0.50
25 1 0.05
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTATTAAATATTAATTTTTAAAT
Found at i:8118942 original size:15 final size:15
Alignment explanation
Indices: 8118923--8119030 Score: 68
Period size: 15 Copynumber: 7.3 Consensus size: 15
8118913 TTTCAAAAGT
* *
8118923 TTTTTTTTTGTTTTGG
1 TTTTTTTAT-TTTTGA
8118939 TTTTTTTATTTTTGA
1 TTTTTTTATTTTTGA
8118954 TTTTTGATT-TTTTT-A
1 TTTTT--TTATTTTTGA
**
8118969 ACTTTTT-TTTTT-A
1 TTTTTTTATTTTTGA
*
8118982 -TTTTTGATTTTTGA
1 TTTTTTTATTTTTGA
8118996 TTTTTTTAACTTTTT--
1 TTTTTTT-A-TTTTTGA
8119011 TTGTTTTTATTTTTGA
1 TT-TTTTTATTTTTGA
8119027 TTTT
1 TTTT
8119031 CACTTTTTCT
Statistics
Matches: 75, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
12 4 0.05
13 13 0.17
14 6 0.08
15 24 0.32
16 21 0.28
17 7 0.09
ACGTcount: A:0.11, C:0.02, G:0.08, T:0.79
Consensus pattern (15 bp):
TTTTTTTATTTTTGA
Found at i:8118950 original size:7 final size:7
Alignment explanation
Indices: 8118940--8119030 Score: 60
Period size: 7 Copynumber: 12.6 Consensus size: 7
8118930 TTGTTTTGGT
8118940 TTTTTTA
1 TTTTTTA
*
8118947 TTTTTGA
1 TTTTTTA
*
8118954 TTTTTGA
1 TTTTTTA
8118961 TTTTTTTA
1 -TTTTTTA
**
8118969 ACTTTT-
1 TTTTTTA
8118975 TTTTTTA
1 TTTTTTA
*
8118982 TTTTTGA
1 TTTTTTA
*
8118989 TTTTTGA
1 TTTTTTA
8118996 TTTTTTTAA
1 -TTTTTT-A
8119005 CTTTTTT-
1 -TTTTTTA
8119012 TGTTTTTA
1 T-TTTTTA
*
8119020 TTTTTGA
1 TTTTTTA
8119027 TTTT
1 TTTT
8119031 CACTTTTTCT
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
6 5 0.07
7 44 0.65
8 12 0.18
9 7 0.10
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:8118950 original size:22 final size:23
Alignment explanation
Indices: 8118925--8118980 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
8118915 TCAAAAGTTT
*
8118925 TTTTTTTGTTTTGGTTTTTTT-A-
1 TTTTTTT-TTTTGATTTTTTTAAC
*
8118947 TTTTTGATTTTTGATTTTTTTAAC
1 TTTTT-TTTTTTGATTTTTTTAAC
8118971 TTTTTTTTTT
1 TTTTTTTTTT
8118981 ATTTTTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 17 0.61
23 6 0.21
24 5 0.18
ACGTcount: A:0.09, C:0.02, G:0.09, T:0.80
Consensus pattern (23 bp):
TTTTTTTTTTTGATTTTTTTAAC
Found at i:8118978 original size:35 final size:36
Alignment explanation
Indices: 8118939--8119030 Score: 159
Period size: 35 Copynumber: 2.5 Consensus size: 36
8118929 TTTGTTTTGG
8118939 TTTTTTTATTTTTGATTTTTGATTTTTTTAAC-TTT
1 TTTTTTTATTTTTGATTTTTGATTTTTTTAACTTTT
8118974 TTTTTTTATTTTTGATTTTTGATTTTTTTAACTTTTT
1 TTTTTTTATTTTTGATTTTTGATTTTTTTAAC-TTTT
8119011 TTGTTTTTATTTTTGATTTT
1 TT-TTTTTATTTTTGATTTT
8119031 CACTTTTTCT
Statistics
Matches: 54, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
35 32 0.59
37 5 0.09
38 17 0.31
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (36 bp):
TTTTTTTATTTTTGATTTTTGATTTTTTTAACTTTT
Found at i:8119591 original size:23 final size:23
Alignment explanation
Indices: 8119540--8119603 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
8119530 TTAGTATGCC
*
8119540 AACTAAACTAGGCATAAAGTGTG
1 AACTAAACTAGGCTTAAAGTGTG
8119563 AACTAAACTAGGCTTAAAGTGCT-
1 AACTAAACTAGGCTTAAAGTG-TG
* *
8119586 AGCTAAACTGGGCTTAAA
1 AACTAAACTAGGCTTAAA
8119604 AATCTCAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 36 0.97
24 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (23 bp):
AACTAAACTAGGCTTAAAGTGTG
Found at i:8119744 original size:22 final size:22
Alignment explanation
Indices: 8119700--8119744 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8119690 AAATACCAAC
**
8119700 TAATTTGGGCTTAGGTGTTAGT
1 TAATTTGGGCTTAGGTGCCAGT
8119722 TAATTTGGGCTTAGGTGCCAGT
1 TAATTTGGGCTTAGGTGCCAGT
8119744 T
1 T
8119745 GGTCTGGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.31, T:0.42
Consensus pattern (22 bp):
TAATTTGGGCTTAGGTGCCAGT
Found at i:8119808 original size:27 final size:25
Alignment explanation
Indices: 8119749--8119810 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 25
8119739 CCAGTTGGTC
*
8119749 TGGGCTTAAAGTACCAACTAAACTA
1 TGGGCTTAAAATACCAACTAAACTA
* *
8119774 --GGTTTAAAATGCCAACTAAACTA
1 TGGGCTTAAAATACCAACTAAACTA
8119797 TTTGGGCTTAAAAT
1 --TGGGCTTAAAAT
8119811 CTTAAATGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 20 0.69
27 9 0.31
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (25 bp):
TGGGCTTAAAATACCAACTAAACTA
Found at i:8119870 original size:23 final size:23
Alignment explanation
Indices: 8119826--8119887 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
8119816 ATGTGCTAGC
* * *
8119826 TAATCTGGGCTTAAAATGCCAGT
1 TAATCTGGGCTTAGAGTACCAGT
8119849 TAATCTGGGCTTAGAGTACCAGT
1 TAATCTGGGCTTAGAGTACCAGT
* *
8119872 TAGTCTAGGCTT-GAGT
1 TAATCTGGGCTTAGAGT
8119888 GCTAGTCGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 4 0.12
23 30 0.88
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (23 bp):
TAATCTGGGCTTAGAGTACCAGT
Found at i:8122353 original size:3 final size:3
Alignment explanation
Indices: 8122345--8122387 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
8122335 ATTAATCCTA
8122345 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
8122388 TCAAAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8126256 original size:46 final size:47
Alignment explanation
Indices: 8126152--8126262 Score: 170
Period size: 47 Copynumber: 2.4 Consensus size: 47
8126142 ACATGTATTG
* * *
8126152 AATGATGTTTAACAGTCTTTGCTGACCTTGAACTATTCATATTGTCA
1 AATGATGTTCAACAATCTTTGCCGACCTTGAACTATTCATATTGTCA
* *
8126199 AATCATGTTCAACAATCTTTGCCGACCTTGGACTATT-ATATTGTCA
1 AATGATGTTCAACAATCTTTGCCGACCTTGAACTATTCATATTGTCA
8126245 AATGATGTTCAACAATCT
1 AATGATGTTCAACAATCT
8126263 CTGTTGATCT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 26 0.45
47 32 0.55
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (47 bp):
AATGATGTTCAACAATCTTTGCCGACCTTGAACTATTCATATTGTCA
Found at i:8132753 original size:7 final size:7
Alignment explanation
Indices: 8132738--8132777 Score: 50
Period size: 6 Copynumber: 6.1 Consensus size: 7
8132728 CAAAATTTTG
*
8132738 AAATAAA
1 AAATGAA
8132745 AAATG-A
1 AAATGAA
8132751 AAATG-A
1 AAATGAA
8132757 AAAT-AA
1 AAATGAA
8132763 AAATGAA
1 AAATGAA
8132770 AAATGAA
1 AAATGAA
8132777 A
1 A
8132778 GATTAAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 16 0.53
7 14 0.47
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:8132759 original size:12 final size:13
Alignment explanation
Indices: 8132738--8132777 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8132728 CAAAATTTTG
*
8132738 AAATAAAAAATGA
1 AAATGAAAAATGA
*
8132751 AAATG-AAAATAA
1 AAATGAAAAATGA
8132763 AAATGAAAAATGA
1 AAATGAAAAATGA
8132776 AA
1 AA
8132778 GATTAAGTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (13 bp):
AAATGAAAAATGA
Found at i:8132762 original size:19 final size:19
Alignment explanation
Indices: 8132738--8132777 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
8132728 CAAAATTTTG
8132738 AAATAAAAAATG-AAAATGA
1 AAAT-AAAAATGAAAAATGA
8132757 AAATAAAAATGAAAAATGA
1 AAATAAAAATGAAAAATGA
8132776 AA
1 AA
8132778 GATTAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (19 bp):
AAATAAAAATGAAAAATGA
Found at i:8132891 original size:115 final size:109
Alignment explanation
Indices: 8132761--8132969 Score: 328
Period size: 115 Copynumber: 1.9 Consensus size: 109
8132751 AAATGAAAAT
* * * *
8132761 AAAAATGAAAAATGAAAGATTAAGTTGCATGAATATTTTCGTTTGATCATTATAACTTCTAGGGT
1 AAAAATGAAAAATGAAAGATTAAGTTGCATGAATAGTTTCATTTGATCATTATAACTTC-AAGGC
8132826 TAAAAAGAAAAAAAGGCAAGAACATATTTAAAAGGAAAATGAAAATTTTA
65 T----A-AAAAAAAGGCAAGAACATATTTAAAAGGAAAATGAAAATTTTA
8132876 AAAAATGAAAAATGAAAGATTAAGTTGCATGAATAGTTTCATTTGATCATTATAACTTCAAGGCT
1 AAAAATGAAAAATGAAAGATTAAGTTGCATGAATAGTTTCATTTGATCATTATAACTTCAAGGCT
8132941 AAAAAAAAGGCAAGAACATATTTAAAAGG
66 AAAAAAAAGGCAAGAACATATTTAAAAGG
8132970 TAGGAGTCTG
Statistics
Matches: 90, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
109 28 0.31
110 1 0.01
114 4 0.04
115 57 0.63
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.28
Consensus pattern (109 bp):
AAAAATGAAAAATGAAAGATTAAGTTGCATGAATAGTTTCATTTGATCATTATAACTTCAAGGCT
AAAAAAAAGGCAAGAACATATTTAAAAGGAAAATGAAAATTTTA
Found at i:8133466 original size:170 final size:174
Alignment explanation
Indices: 8133140--8133491 Score: 595
Period size: 170 Copynumber: 2.0 Consensus size: 174
8133130 AATCGCATCG
* *
8133140 GAATGAGAGTTTGGATGCTTCCAAACGCAGCCTTAATTTTCTTCTTCATAGAAATATTGCCGAAA
1 GAATGAGAGCTTGGATGCTTCCAAACGCAGCCTTAATTTTCTTCTTCATAGAAATATTGCCAAAA
*
8133205 GCACTTTTCTAATCTACCATTGGAAGTGTTCTCCATGTCACCAAAATCAGGGAAAAAGTGTATAA
66 GCAC-TTTCT-ATCT--CATTGGAAGTGTTCTCCATGTCACCAAAATCAGAGAAAAAGTGTATAA
*
8133270 AATTAATTAATGATTGGATAAGCGTGGTTAATTTTTAACTTTTCTTTT
127 AATTAATTAATGATTGGATAAGCGTGGTTAATTGTTAACTTTTCTTTT
*
8133318 GAATGAGAGCTTGGATGCTTCCAAACGTAGCCTTAATTTTCTTCTTCATAGAAATATTGCCAAAA
1 GAATGAGAGCTTGGATGCTTCCAAACGCAGCCTTAATTTTCTTCTTCATAGAAATATTGCCAAAA
8133383 GCAC-TT-T-TCT-ATTGGAAGTGTTCTCCATGTCACCAAAATCAGAGAAAAAGTGTATAAAATT
66 GCACTTTCTATCTCATTGGAAGTGTTCTCCATGTCACCAAAATCAGAGAAAAAGTGTATAAAATT
8133444 AATTAATGATTGGATAAGCGTGGTTAATTGTTAACTTTTCTTTT
131 AATTAATGATTGGATAAGCGTGGTTAATTGTTAACTTTTCTTTT
8133488 GAAT
1 GAAT
8133492 TTTCAATATG
Statistics
Matches: 169, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
170 97 0.57
173 3 0.02
175 1 0.01
176 2 0.01
178 66 0.39
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (174 bp):
GAATGAGAGCTTGGATGCTTCCAAACGCAGCCTTAATTTTCTTCTTCATAGAAATATTGCCAAAA
GCACTTTCTATCTCATTGGAAGTGTTCTCCATGTCACCAAAATCAGAGAAAAAGTGTATAAAATT
AATTAATGATTGGATAAGCGTGGTTAATTGTTAACTTTTCTTTT
Found at i:8141980 original size:2 final size:2
Alignment explanation
Indices: 8141973--8142004 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8141963 CACTCAATTC
*
8141973 AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8142005 GTTTTGCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8143420 original size:16 final size:17
Alignment explanation
Indices: 8143396--8143434 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
8143386 AAATATTAAA
*
8143396 TAATTTAATTTTT-CAT
1 TAATATAATTTTTACAT
*
8143412 TAATATAATTTTTACTT
1 TAATATAATTTTTACAT
8143429 TAATAT
1 TAATAT
8143435 TTTTAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TAATATAATTTTTACAT
Found at i:8143459 original size:20 final size:21
Alignment explanation
Indices: 8143434--8143473 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8143424 TACTTTAATA
*
8143434 TTTTTA-ATAATTATTTTCTC
1 TTTTTATATAATTAATTTCTC
8143454 TTTTTATTATAATTAATTTC
1 TTTTTA-TATAATTAATTTC
8143474 ATCGCTACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTATATAATTAATTTCTC
Found at i:8143545 original size:21 final size:21
Alignment explanation
Indices: 8143521--8143578 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 21
8143511 ATCATTAGTT
* * *
8143521 TTAATCTTATTGTTGTAAGAC
1 TTAATCTTATTATTATAAGAA
* * *
8143542 TTAATTTTACTATTATAATAA
1 TTAATCTTATTATTATAAGAA
*
8143563 TTAATCTTATTTTTAT
1 TTAATCTTATTATTAT
8143579 CGTTATTTTC
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (21 bp):
TTAATCTTATTATTATAAGAA
Found at i:8144954 original size:4 final size:4
Alignment explanation
Indices: 8144945--8144970 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8144935 AAGATGAAAA
8144945 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
8144971 TAAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:8145296 original size:5 final size:5
Alignment explanation
Indices: 8145286--8145321 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
8145276 AAATGGGTTA
8145286 AAAAT AAAAT AAAAT AAAAT -AAA- AAAAT AAAA- AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
8145322 AATGAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
4 10 0.34
5 19 0.66
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:8145322 original size:10 final size:10
Alignment explanation
Indices: 8145284--8145331 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
8145274 TAAAATGGGT
8145284 TAAAAATAAAA
1 TAAAAA-AAAA
*
8145295 TAAAATAAAA
1 TAAAAAAAAA
*
8145305 TAAAAAAATA
1 TAAAAAAAAA
8145315 -AAAAAAAAA
1 TAAAAAAAAA
8145324 TGAAAAAA
1 T-AAAAAA
8145332 GGAAAACCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 8 0.26
10 12 0.39
11 11 0.35
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (10 bp):
TAAAAAAAAA
Found at i:8145330 original size:11 final size:11
Alignment explanation
Indices: 8145285--8145331 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
8145275 AAAATGGGTT
8145285 AAAAATAAAATA
1 AAAAATAAAA-A
*
8145297 AAATAA-AATAA
1 AAA-AATAAAAA
8145308 AAAAATAAAAA
1 AAAAATAAAAA
*
8145319 AAAAATGAAAA
1 AAAAATAAAAA
8145330 AA
1 AA
8145332 GGAAAACCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 2 0.07
11 20 0.67
12 6 0.20
13 2 0.07
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAAATAAAAA
Found at i:8146183 original size:3 final size:3
Alignment explanation
Indices: 8146175--8146270 Score: 90
Period size: 3 Copynumber: 31.3 Consensus size: 3
8146165 AGTAAACGTA
*
8146175 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AACT -AT AGT ATAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT A-AT AAT
* * *
8146221 -AT AAT ATAT AAT AAT AAT AAT TAT AGT GTAT AAT -AT AAT ATAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT AAT
8146267 AAT A
1 AAT A
8146271 CTATAGTATA
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
2 5 0.06
3 62 0.81
4 10 0.13
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:8146220 original size:31 final size:31
Alignment explanation
Indices: 8146185--8146298 Score: 126
Period size: 31 Copynumber: 3.6 Consensus size: 31
8146175 AATAATAATA
8146185 ATAATAATAATAATAATAATAACTATAGTAT
1 ATAATAATAATAATAATAATAACTATAGTAT
* *
8146216 ATAATATAATATATAATAATAATAATTATAGTGT
1 AT-A-ATAATA-ATAATAATAATAACTATAGTAT
8146250 ATAAT-ATAATATATAATAAT-ACTATAGTAT
1 ATAATAATAATA-ATAATAATAACTATAGTAT
*
8146280 ACCAATAA-AAGTAATAATA
1 A-TAATAATAA-TAATAATA
8146299 TCCCCAGCTA
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
30 12 0.17
31 24 0.34
32 6 0.08
33 7 0.10
34 22 0.31
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (31 bp):
ATAATAATAATAATAATAATAACTATAGTAT
Found at i:8146232 original size:34 final size:34
Alignment explanation
Indices: 8146182--8146270 Score: 144
Period size: 34 Copynumber: 2.6 Consensus size: 34
8146172 GTAAATAATA
8146182 ATAATAATAATA-ATAATAATAATAACTATAGTAT
1 ATAAT-ATAATATATAATAATAATAACTATAGTAT
* *
8146216 ATAATATAATATATAATAATAATAATTATAGTGT
1 ATAATATAATATATAATAATAATAACTATAGTAT
8146250 ATAATATAATATATAATAATA
1 ATAATATAATATATAATAATA
8146271 CTATAGTATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
33 6 0.12
34 46 0.88
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (34 bp):
ATAATATAATATATAATAATAATAACTATAGTAT
Found at i:8158317 original size:3 final size:3
Alignment explanation
Indices: 8158309--8158376 Score: 75
Period size: 3 Copynumber: 22.3 Consensus size: 3
8158299 AATGTAAATA
* * * *
8158309 AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AGT ATAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
8158355 AAT ATAT AAT -AT AAT AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT A
8158377 TTATAGTATA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
2 2 0.04
3 47 0.87
4 5 0.09
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8158349 original size:16 final size:16
Alignment explanation
Indices: 8158309--8158365 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
8158299 AATGTAAATA
*
8158309 AATA-ATAATAATAAT
1 AATATATAATAACAAT
*
8158324 AATA-ATAATAACCAT
1 AATATATAATAACAAT
*
8158339 AGTATATAATAACAAT
1 AATATATAATAACAAT
8158355 AATATATAATA
1 AATATATAATA
8158366 TAATAATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 16 0.44
16 20 0.56
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (16 bp):
AATATATAATAACAAT
Found at i:8158369 original size:43 final size:42
Alignment explanation
Indices: 8158308--8158404 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 42
8158298 AAATGTAAAT
8158308 AAATAATAATAATAATAATAATAATAACCATAGTATA-TAATA
1 AAATAATAATAATAATAATAATAAT-ACCATAGTATACTAATA
**
8158350 ACAATAATATATAAT-ATAATAATAATATTATAGTATACTAATA
1 A-AATAATA-ATAATAATAATAATAATACCATAGTATACTAATA
8158393 AAAGTAATAATA
1 AAA-TAATAATA
8158405 TCCTAAGCTA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
42 15 0.31
43 29 0.59
44 5 0.10
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (42 bp):
AAATAATAATAATAATAATAATAATACCATAGTATACTAATA
Found at i:8158393 original size:37 final size:38
Alignment explanation
Indices: 8158309--8158404 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 38
8158299 AATGTAAATA
*
8158309 AATAA-TAATAATAATAATAATAATAACCATAGTATAT
1 AATAACTAATAATAATAATAATAATAACAATAGTATAT
*
8158346 AATAAC-AATAATATATAAT-ATAATAATAATA-T-TAT
1 AATAACTAATAATA-ATAATAATAATAACAATAGTATAT
*
8158381 AGTATACTAATAA-AAGTAATAATA
1 AATA-ACTAATAATAA-TAATAATA
8158405 TCCTAAGCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
35 7 0.14
36 8 0.16
37 30 0.60
38 5 0.10
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.33
Consensus pattern (38 bp):
AATAACTAATAATAATAATAATAATAACAATAGTATAT
Found at i:8165014 original size:18 final size:18
Alignment explanation
Indices: 8164991--8165028 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8164981 TTTCTATGTA
*
8164991 TTGCTTTGATTGTTGTGT
1 TTGCTTTGATTGCTGTGT
8165009 TTGCTTTGATTGCTGTGT
1 TTGCTTTGATTGCTGTGT
8165027 TT
1 TT
8165029 CTGTGTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.05, C:0.08, G:0.26, T:0.61
Consensus pattern (18 bp):
TTGCTTTGATTGCTGTGT
Found at i:8165899 original size:17 final size:17
Alignment explanation
Indices: 8165868--8165900 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8165858 ATTACGTGAT
8165868 TAATTTTTATCATTTTC
1 TAATTTTTATCATTTTC
8165885 TAATTATTTAT-ATTTT
1 TAATT-TTTATCATTTT
8165901 ACATTAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (17 bp):
TAATTTTTATCATTTTC
Found at i:8166263 original size:2 final size:2
Alignment explanation
Indices: 8166256--8166285 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8166246 GACTTACATA
8166256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8166286 CACACACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8169308 original size:5 final size:5
Alignment explanation
Indices: 8169294--8169323 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
8169284 GGAAATAAAT
*
8169294 GAAAA GAAAA AAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
8169324 TTTTTTAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:8170623 original size:145 final size:143
Alignment explanation
Indices: 8170254--8170657 Score: 481
Period size: 143 Copynumber: 2.8 Consensus size: 143
8170244 GTGCAAAAGT
** * ***
8170254 ACCAAAATACCCTTATAGGGGTATTTTCATAATTTGGCCTTTTTGAGCTTGGATTTTTGTGAAAC
1 ACCAAAATACCCTTATAGGGGTATTTTCATAATTTGGCCTTTTAAAGC-TCGATTTTCAAGAAAC
* * *
8170319 TTTTCAGATATCAATTTCATAATATTTCATGATTTTTGGTACATTTGAAATCACAACAGTACCCA
65 TTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATCACAACAGTACCCA
* **
8170384 AAAAGTATGAAATT
130 AAAAGTATAAAAAC
* * *
8170398 ACCAAAATATCCTTATAGGGGTA-TTTCGTAATTT-GACTTTCTAAAGCTCGAATTTTCAAGAAA
1 ACCAAAATACCCTTATAGGGGTATTTTCATAATTTGGCCTTT-TAAAGCTCG-ATTTTCAAGAAA
* * * * *
8170461 CTTTTCAGATCTTAATTTCACAATATTTCATGATTTTTGATGCATTTAAAATTACAGCAGTACCC
64 CTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATCACAACAGTA-CC
* *
8170526 CGAAAAGTGTAAAAAC
128 CAAAAAGTATAAAAAC
* * * * *
8170542 ATCAAAATACCCTTATATGGGTATTTTCATAATTTGGCCTTTTCAAGCTCAGATTTTCACGAAAT
1 ACCAAAATACCCTTATAGGGGTATTTTCATAATTTGGCCTTTTAAAGCTC-GATTTTCAAGAAAC
* *
8170607 TTTTTAGATCTCAATTTTATAATATTTCATGATTTTTGGTGC-TTTAAAATC
65 TTTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATC
8170658 TTAAAAATGA
Statistics
Matches: 218, Mismatches: 36, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
142 7 0.03
143 77 0.35
144 63 0.29
145 65 0.30
146 6 0.03
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (143 bp):
ACCAAAATACCCTTATAGGGGTATTTTCATAATTTGGCCTTTTAAAGCTCGATTTTCAAGAAACT
TTTCAGATCTCAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATCACAACAGTACCCAA
AAAGTATAAAAAC
Found at i:8176370 original size:19 final size:19
Alignment explanation
Indices: 8176348--8176388 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8176338 AAGGTCTAGG
8176348 TTAACGTTTAGGATTTAGT
1 TTAACGTTTAGGATTTAGT
* * *
8176367 TTAAGGTTTATGATTTGGT
1 TTAACGTTTAGGATTTAGT
8176386 TTA
1 TTA
8176389 GTGCTTATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (19 bp):
TTAACGTTTAGGATTTAGT
Found at i:8176461 original size:19 final size:19
Alignment explanation
Indices: 8176426--8176483 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
8176416 GTTTTTAAGG
8176426 TTGA-TTTGGGCTTTAGGGT
1 TTGATTTTGGG-TTTAGGGT
*
8176445 TTGGTTTTGGGTTTAGGGT
1 TTGATTTTGGGTTTAGGGT
*
8176464 TTGATTTAGGGTTT-GGGT
1 TTGATTTTGGGTTTAGGGT
8176482 TT
1 TT
8176484 CATGGGTGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.17
19 23 0.66
20 6 0.17
ACGTcount: A:0.09, C:0.02, G:0.38, T:0.52
Consensus pattern (19 bp):
TTGATTTTGGGTTTAGGGT
Found at i:8176567 original size:20 final size:20
Alignment explanation
Indices: 8176544--8176592 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
8176534 AAGCTTTGGA
8176544 GGGTGGTTTTAAGATTTCAT
1 GGGTGGTTTTAAGATTTCAT
8176564 GGGTGGTTTTAAGATTTCAT
1 GGGTGGTTTTAAGATTTCAT
*
8176584 GGGTAGTTT
1 GGGTGGTTT
8176593 AGGGTTTGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.45
Consensus pattern (20 bp):
GGGTGGTTTTAAGATTTCAT
Found at i:8176630 original size:19 final size:19
Alignment explanation
Indices: 8176473--8176633 Score: 112
Period size: 19 Copynumber: 8.4 Consensus size: 19
8176463 TTTGATTTAG
8176473 GGTTT-GGGTTTCATGGGT
1 GGTTTAGGGTTTCATGGGT
* *
8176491 GATTTAGGGTTTCAAGGGT
1 GGTTTAGGGTTTCATGGGT
* *
8176510 GGTTTAGGGTTTCATGAGC
1 GGTTTAGGGTTTCATGGGT
* * * *
8176529 GGCTTAAGCTTTGGA-GGGT
1 GGTTTAGGGTTT-CATGGGT
* *
8176548 GGTTTTAAGATTTCATGGGT
1 GG-TTTAGGGTTTCATGGGT
* *
8176568 GGTTTTAAGATTTCATGGGT
1 GG-TTTAGGGTTTCATGGGT
* * **
8176588 AGTTTAGGGTTTGGA-GTAT
1 GGTTTAGGGTTT-CATGGGT
8176607 GGTTTAGGGTTTCATGGGT
1 GGTTTAGGGTTTCATGGGT
*
8176626 AGTTTAGG
1 GGTTTAGG
8176634 ATTTTGAAGG
Statistics
Matches: 111, Mismatches: 26, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
18 5 0.05
19 71 0.64
20 35 0.32
ACGTcount: A:0.17, C:0.06, G:0.37, T:0.40
Consensus pattern (19 bp):
GGTTTAGGGTTTCATGGGT
Found at i:8176650 original size:38 final size:37
Alignment explanation
Indices: 8176578--8176653 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 37
8176568 GGTTTTAAGA
*
8176578 TTTCATGGGTAGTTTAGGGTTTGGAGTATGGTTTAGGG
1 TTTCATGGGTAGTTTAGGGTTTGAAGTA-GGTTTAGGG
*
8176616 TTTCATGGGTAGTTTAGGATTTTGAAGGTA-GTTTAGGG
1 TTTCATGGGTAGTTTAGG-GTTTGAA-GTAGGTTTAGGG
8176654 ATAAATGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 26 0.76
39 5 0.15
40 3 0.09
ACGTcount: A:0.18, C:0.03, G:0.37, T:0.42
Consensus pattern (37 bp):
TTTCATGGGTAGTTTAGGGTTTGAAGTAGGTTTAGGG
Done.