Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 48 of 106
Found at i:8320998 original size:26 final size:27
Alignment explanation
Indices: 8320904--8321017 Score: 74
Period size: 22 Copynumber: 4.6 Consensus size: 27
8320894 GTAATAATAT
*
8320904 TATTTATT-A-ATATATTA-TTA-CAA
1 TATTTATTAATATATATTATTTATGAA
*
8320927 TATTTATTAAT-TA-A--ATTAAT-AA
1 TATTTATTAATATATATTATTTATGAA
8320949 TATTTATTAATATAATATTATTTATGAA
1 TATTTATTAATAT-ATATTATTTATGAA
*
8320977 TATATTA-TAATAT-TATT-TTT-TAATA
1 TAT-TTATTAATATATATTATTTATGA-A
8321002 TCATTTATTAATATAT
1 T-ATTTATTAATATAT
8321018 TATATTAATA
Statistics
Matches: 73, Mismatches: 3, Indels: 26
0.72 0.03 0.25
Matches are distributed among these distances:
21 1 0.01
22 15 0.21
23 10 0.14
24 6 0.08
25 9 0.12
26 12 0.16
27 6 0.08
28 11 0.15
29 3 0.04
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (27 bp):
TATTTATTAATATATATTATTTATGAA
Found at i:8321022 original size:41 final size:42
Alignment explanation
Indices: 8320895--8321040 Score: 111
Period size: 41 Copynumber: 3.4 Consensus size: 42
8320885 TATTATTTAG
* ** **
8320895 TAATAATATTATTTATTAATATATTATTACAATATTTAT-TAAT
1 TAATAATATTATTTATTAATATAATATTA-TTTATGAATAT-AT
*
8320938 TAAATTAATAATATTTATTAATATAATATTATTTATGAATATAT
1 T-AA-TAATATTATTTATTAATATAATATTATTTATGAATATAT
* * *
8320982 T-ATAATATTATTTTTTAATATCAT-TTATTAATAT-ATTATAT
1 TAATAATATTATTTATTAATATAATATTATT--TATGAATATAT
8321023 TAATAGTATATTATTTAT
1 TAATA--ATATTATTTAT
8321041 AAGTAAAATT
Statistics
Matches: 84, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
40 5 0.06
41 26 0.31
42 7 0.08
43 1 0.01
44 20 0.24
45 25 0.30
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (42 bp):
TAATAATATTATTTATTAATATAATATTATTTATGAATATAT
Found at i:8321609 original size:17 final size:16
Alignment explanation
Indices: 8321579--8321617 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
8321569 ATATGTAACT
*
8321579 AAAATAAATAAATAAA
1 AAAACAAATAAATAAA
*
8321595 TAAACAAATAGAATAAA
1 AAAACAAATA-AATAAA
8321612 AAAACA
1 AAAACA
8321618 TCTTTTGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAACAAATAAATAAA
Found at i:8329234 original size:22 final size:22
Alignment explanation
Indices: 8329206--8329249 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8329196 GAGATATCAC
8329206 TTGGTCAATTATGCTTAGTGAT
1 TTGGTCAATTATGCTTAGTGAT
8329228 TTGGTCAATTATGCTTAGTGAT
1 TTGGTCAATTATGCTTAGTGAT
8329250 GTAGAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (22 bp):
TTGGTCAATTATGCTTAGTGAT
Found at i:8331041 original size:23 final size:22
Alignment explanation
Indices: 8331015--8331058 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8331005 TCTTGAATTG
*
8331015 TTTTTGAACTCTAGTTTGATTTC
1 TTTTGGAACTC-AGTTTGATTTC
* *
8331038 TTTTGGAATTCGGTTTGATTT
1 TTTTGGAACTCAGTTTGATTT
8331059 TTTGAAGCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.16, C:0.09, G:0.18, T:0.57
Consensus pattern (22 bp):
TTTTGGAACTCAGTTTGATTTC
Found at i:8331759 original size:32 final size:32
Alignment explanation
Indices: 8331663--8331776 Score: 140
Period size: 33 Copynumber: 3.5 Consensus size: 32
8331653 TAATTGTATG
* **
8331663 TTTAATTTCATGTTTAACTATATGATTATATA
1 TTTAATTTCATGTTTAATTGCATGATTATATA
* *
8331695 TTTAATTTTATGTATTAGTTGCATGATTATATA
1 TTTAATTTCATGT-TTAATTGCATGATTATATA
8331728 TTTAATTTCATGTTTAATTGCATGATAATATATA
1 TTTAATTTCATGTTTAATTGCATGAT--TATATA
8331762 TTTAATTGT-ATGTTT
1 TTTAATT-TCATGTTT
8331777 GTATGAATAT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
32 24 0.34
33 27 0.38
34 19 0.27
35 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (32 bp):
TTTAATTTCATGTTTAATTGCATGATTATATA
Found at i:8331861 original size:28 final size:29
Alignment explanation
Indices: 8331825--8331887 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 29
8331815 TATACTATTA
8331825 TTTGCATGA-TAATATATTTAATTACATG
1 TTTGCATGATTAATATATTTAATTACATG
*
8331853 TTTGCATGATTTTAATATATTTAATTGCATG
1 TTTGCATGA--TTAATATATTTAATTACATG
8331884 TTTG
1 TTTG
8331888 TTTGTGGGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
28 9 0.29
31 22 0.71
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (29 bp):
TTTGCATGATTAATATATTTAATTACATG
Found at i:8331986 original size:22 final size:22
Alignment explanation
Indices: 8331902--8331999 Score: 75
Period size: 22 Copynumber: 4.5 Consensus size: 22
8331892 TGGGGTTTTT
*
8331902 TATTATTTGCATGGTATTTTATG
1 TATTATTTGCAT-GTATTTTATA
8331925 T-TTATTTGCATG-ATTATTAATA
1 TATTATTTGCATGTATT-TT-ATA
8331947 TATTATTTG--TGTGA-TTTAT-
1 TATTATTTGCATGT-ATTTTATA
*
8331966 TATTATTTACATGGTATTTTATA
1 TATTATTTGCAT-GTATTTTATA
*
8331989 T-TTAATTGCAT
1 TATTATTTGCAT
8332000 AATTACGAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 21
0.71 0.05 0.24
Matches are distributed among these distances:
19 8 0.13
20 5 0.08
21 9 0.15
22 29 0.48
23 10 0.16
ACGTcount: A:0.27, C:0.04, G:0.12, T:0.57
Consensus pattern (22 bp):
TATTATTTGCATGTATTTTATA
Found at i:8333174 original size:18 final size:17
Alignment explanation
Indices: 8333136--8333174 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
8333126 ATGGGACAAT
*
8333136 TATTATTCTTGTAAATT
1 TATTATTCTTGTAAATA
*
8333153 TATTATTCTTTGTATATA
1 TATTATTC-TTGTAAATA
8333171 TATT
1 TATT
8333175 TTTTGCATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (17 bp):
TATTATTCTTGTAAATA
Found at i:8343201 original size:88 final size:90
Alignment explanation
Indices: 8342996--8343218 Score: 260
Period size: 88 Copynumber: 2.5 Consensus size: 90
8342986 CCGTGTTTAT
* * *
8342996 ATTTGGATGATAAAGTGTATAAGATTATTTGATAGTGCATGATATCTATGAGGATCATGCATGAT
1 ATTTGGATGATAAAGTGGATGAGATTACTTGATAGTGCATGATATCTATGAGGATCA-GCATGAT
8343061 AACCTATGTTGATAAGAAAATTTGGA
65 AACCTATGTTGATAAGAAAATTTGGA
* * * * *
8343087 ATTTGGATGATAAAGTGTATGCGATTACTTAATAATGCATGATATCTA-GTGGATCA-CAT-AGT
1 ATTTGGATGATAAAGTGGATGAGATTACTTGATAGTGCATGATATCTATGAGGATCAGCATGA-T
* *
8343149 AAACC-ATGTTGATAAGAAACTTTTGA
65 -AACCTATGTTGATAAGAAAATTTGGA
*
8343175 ATTTTGG-TGATGAAA-TGGATGAGATTACTTGATAGGGCATGATA
1 A-TTTGGATGAT-AAAGTGGATGAGATTACTTGATAGTGCATGATA
8343219 GCTCATGTTG
Statistics
Matches: 115, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
87 1 0.01
88 52 0.45
89 12 0.10
90 7 0.06
91 43 0.37
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (90 bp):
ATTTGGATGATAAAGTGGATGAGATTACTTGATAGTGCATGATATCTATGAGGATCAGCATGATA
ACCTATGTTGATAAGAAAATTTGGA
Found at i:8343713 original size:43 final size:42
Alignment explanation
Indices: 8343665--8343803 Score: 161
Period size: 43 Copynumber: 3.2 Consensus size: 42
8343655 GAATGATCTT
* * *
8343665 ATTTTATTTTTCAAAAGTTCTAAAGCCTTAATTGTGGGGGAAC
1 ATTTTATTTTTAAAAAGTT-TAAAGCCTTAATTGTGGGAGAGC
* * *
8343708 ATTTTATTTTTAAAAAGTTTTAAAGCCTCAATTATGGAAGAGC
1 ATTTTATTTTTAAAAAG-TTTAAAGCCTTAATTGTGGGAGAGC
* * * *
8343751 TTTTTATTTTTGAAAAGTTTCAAAGCCTTATTTGTTGGAGAGC
1 ATTTTATTTTTAAAAAGTTT-AAAGCCTTAATTGTGGGAGAGC
8343794 ATTTTATTTT
1 ATTTTATTTT
8343804 CGCGAAAGTT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 3 0.04
43 75 0.94
44 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (42 bp):
ATTTTATTTTTAAAAAGTTTAAAGCCTTAATTGTGGGAGAGC
Found at i:8344629 original size:96 final size:95
Alignment explanation
Indices: 8344512--8344701 Score: 346
Period size: 96 Copynumber: 2.0 Consensus size: 95
8344502 AAAGACATTA
8344512 GAGATCTTTGATTTTTGGGATTTGGGAATTAAATTCCTAAATCTTGAATTGTTTTTGAGCTCTAG
1 GAGATCTTTGATTTTTGGGATTTGGGAATTAAATTCCTAAATCTTGAATTGTTTTTGAGCTCTAG
8344577 TTTGATTTTTTTTTTGGAATTTGGTA-GATTG
66 TTTGA--TTTTTTTTGGAATTTGGTATGATTG
*
8344608 GAGATCTTTGATTTTTGGGATTTGGGAATTAAATTCCTAAATCTTGAATTGTTTTTGAGCTTTAG
1 GAGATCTTTGATTTTTGGGATTTGGGAATTAAATTCCTAAATCTTGAATTGTTTTTGAGCTCTAG
8344673 TTTGATTTTTTTTGGAATTTGGTATGATT
66 TTTGATTTTTTTTGGAATTTGGTATGATT
8344702 TTTTGAAAAT
Statistics
Matches: 92, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
94 19 0.21
95 4 0.04
96 69 0.75
ACGTcount: A:0.22, C:0.06, G:0.22, T:0.51
Consensus pattern (95 bp):
GAGATCTTTGATTTTTGGGATTTGGGAATTAAATTCCTAAATCTTGAATTGTTTTTGAGCTCTAG
TTTGATTTTTTTTGGAATTTGGTATGATTG
Found at i:8345312 original size:20 final size:20
Alignment explanation
Indices: 8345287--8345406 Score: 65
Period size: 20 Copynumber: 6.2 Consensus size: 20
8345277 ATTTCATGAT
8345287 TTGCATGATTATATATTTAA
1 TTGCATGATTATATATTTAA
* *
8345307 TTGCATGTTTAATTTCATGTTTAA
1 TTGCATGATT-A--T-ATATTTAA
* *
8345331 CTGTATGATTATATATTTAA
1 TTGCATGATTATATATTTAA
* *
8345351 -T---T--TTATGTA-TTAG
1 TTGCATGATTATATATTTAA
* *
8345364 TTGAATGATTTTATATTTAA
1 TTGCATGATTATATATTTAA
* *
8345384 TTTCATGATAATATATTTAA
1 TTGCATGATTATATATTTAA
8345404 TTG
1 TTG
8345407 TATGTTTGCA
Statistics
Matches: 73, Mismatches: 16, Indels: 22
0.66 0.14 0.20
Matches are distributed among these distances:
13 3 0.04
14 7 0.10
16 1 0.01
17 1 0.01
19 6 0.08
20 37 0.51
21 2 0.03
23 2 0.03
24 14 0.19
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (20 bp):
TTGCATGATTATATATTTAA
Found at i:8345542 original size:79 final size:78
Alignment explanation
Indices: 8345383--8345527 Score: 220
Period size: 78 Copynumber: 1.9 Consensus size: 78
8345373 TTTATATTTA
** *
8345383 ATTTCATGATAATATATTTAATTGTATGTTTGCATGAATAGTAATATATTTACTTGCATGATTAT
1 ATTTCATGATAATATATTTAATTACATGTTTGCATGAATAGTAATATATTTAATTGCATGATTAT
8345448 TTTATATACTATT
66 TTTATATACTATT
** *
8345461 ATTTGCATGATAATATATTTAATTACATGTTTGCATG-ATTTTAATATATTTAATTGCATGTTTA
1 ATTT-CATGATAATATATTTAATTACATGTTTGCATGAATAGTAATATATTTAATTGCATGATTA
8345525 TTT
65 TTT
8345528 ATGTGATTGA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 30 0.50
79 30 0.50
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.51
Consensus pattern (78 bp):
ATTTCATGATAATATATTTAATTACATGTTTGCATGAATAGTAATATATTTAATTGCATGATTAT
TTTATATACTATT
Found at i:8354080 original size:19 final size:20
Alignment explanation
Indices: 8354056--8354098 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
8354046 AAATATATTA
8354056 AAATAATATAA-TAATTTT-T
1 AAATAAT-TAAGTAATTTTAT
8354075 AAATAATTAAGTAATTTTAT
1 AAATAATTAAGTAATTTTAT
8354095 AAAT
1 AAAT
8354099 TTTAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.14
19 14 0.64
20 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AAATAATTAAGTAATTTTAT
Found at i:8354103 original size:19 final size:21
Alignment explanation
Indices: 8354067--8354112 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
8354057 AATAATATAA
8354067 TAATTTT-TAAATAATT-AAG
1 TAATTTTATAAATAATTAAAG
*
8354086 TAATTTTATAAAT-TTTAAAG
1 TAATTTTATAAATAATTAAAG
8354106 -AATTTTA
1 TAATTTTA
8354113 AATCATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TAATTTTATAAATAATTAAAG
Found at i:8355498 original size:20 final size:21
Alignment explanation
Indices: 8355441--8355498 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
8355431 TTTTTACAAC
* *
8355441 AAAATTTTAAAATAATTATTT
1 AAAATTTTAAAATTATTACTT
* *
8355462 AAAATTTTAATACTATTACTT
1 AAAATTTTAAAATTATTACTT
8355483 AAAA-TTTAAAATTATT
1 AAAATTTTAAAATTATT
8355499 TCATTTTAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
AAAATTTTAAAATTATTACTT
Found at i:8356289 original size:2 final size:2
Alignment explanation
Indices: 8356284--8356320 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
8356274 AAGTAGACAT
8356284 TA TA TA -A TA TA TA -A TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8356321 AGAGGATATC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.09
2 29 0.91
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8358233 original size:20 final size:20
Alignment explanation
Indices: 8358210--8358247 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8358200 AAATAACTTT
*
8358210 TTAAAATTTAATACTATTAC
1 TTAAAATTTAAAACTATTAC
8358230 TTAAAATTTAAAACTATT
1 TTAAAATTTAAAACTATT
8358248 TTATTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAATTTAAAACTATTAC
Found at i:8358961 original size:13 final size:12
Alignment explanation
Indices: 8358928--8358953 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8358918 TTTTTTTTTT
8358928 TTTAGTTTTTAA
1 TTTAGTTTTTAA
8358940 TTTAGTTTTTAA
1 TTTAGTTTTTAA
8358952 TT
1 TT
8358954 CTTGTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTAGTTTTTAA
Found at i:8367709 original size:33 final size:33
Alignment explanation
Indices: 8367672--8367758 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 33
8367662 TGAGTTGAGG
8367672 TCTAAAAATAAGATAACTTGGACTAAGCCAAAA
1 TCTAAAAATAAGATAACTTGGACTAAGCCAAAA
* * *
8367705 TCTAACAATGAA-ATAATTTGGACTAAGCCAAAG
1 TCTAAAAAT-AAGATAACTTGGACTAAGCCAAAA
* *
8367738 TTTAAAAATAAGATTACTTGG
1 TCTAAAAATAAGATAACTTGG
8367759 GTTGAACCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
32 2 0.04
33 41 0.91
34 2 0.04
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (33 bp):
TCTAAAAATAAGATAACTTGGACTAAGCCAAAA
Found at i:8368125 original size:40 final size:38
Alignment explanation
Indices: 8368073--8368177 Score: 113
Period size: 39 Copynumber: 2.7 Consensus size: 38
8368063 AATTATCATA
* * * *
8368073 TTTGCAAATTTTCCTCAATCGATG-ATGAAAATCTTATTT
1 TTTGAAAATTTTCCTCAATCGA-GAATCAAAATCTCA-AT
*
8368112 TTTGAAAAGTTTTCCTTAATCGAGAATCAAAATCTCAAT
1 TTTGAAAA-TTTTCCTCAATCGAGAATCAAAATCTCAAT
*
8368151 TTTGAAAATTTTTCCTCGATCGAGAAT
1 TTTGAAAA-TTTTCCTCAATCGAGAAT
8368178 TGACAAGTTG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.59
40 23 0.41
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.40
Consensus pattern (38 bp):
TTTGAAAATTTTCCTCAATCGAGAATCAAAATCTCAAT
Found at i:8369062 original size:24 final size:25
Alignment explanation
Indices: 8369029--8369081 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
8369019 TTTTCCCTCA
*
8369029 TTTTCATTTTTTATTTCT-TTTTCTT
1 TTTTCATTTTTT-TCTCTCTTTTCTT
8369054 TTTTC-TTTTTTTCTCTCTTTTCTT
1 TTTTCATTTTTTTCTCTCTTTTCTT
8369078 TTTT
1 TTTT
8369082 GCTTCATTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 4 0.15
24 17 0.65
25 5 0.19
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (25 bp):
TTTTCATTTTTTTCTCTCTTTTCTT
Found at i:8369063 original size:25 final size:24
Alignment explanation
Indices: 8369029--8369081 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
8369019 TTTTCCCTCA
*
8369029 TTTTCATTTTTTATTTCTTTTTCTT
1 TTTTCATTTTTTATCTC-TTTTCTT
* *
8369054 TTTTCTTTTTTTCTCTCTTTTCTT
1 TTTTCATTTTTTATCTCTTTTCTT
8369078 TTTT
1 TTTT
8369082 GCTTCATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTTCATTTTTTATCTCTTTTCTT
Found at i:8369074 original size:17 final size:15
Alignment explanation
Indices: 8369046--8369081 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
8369036 TTTTTATTTC
8369046 TTTTTCTTTTTTCTT
1 TTTTTCTTTTTTCTT
8369061 TTTTTCTCTCTTTTCTT
1 TTTTTCT-T-TTTTCTT
8369078 TTTT
1 TTTT
8369082 GCTTCATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 1 0.05
17 11 0.58
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTTTCTT
Found at i:8372415 original size:16 final size:18
Alignment explanation
Indices: 8372373--8372416 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
8372363 GATAACTATA
8372373 TTTAC-TTAAAATATTAT
1 TTTACTTTAAAATATTAT
*
8372390 CTTA-TTTAAAA-A-TAT
1 TTTACTTTAAAATATTAT
8372405 TTTACTTTAAAA
1 TTTACTTTAAAA
8372417 GCCAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
15 6 0.26
16 8 0.35
17 9 0.39
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTACTTTAAAATATTAT
Found at i:8372634 original size:13 final size:13
Alignment explanation
Indices: 8372616--8372650 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8372606 CAGATTAGGG
*
8372616 TTAGGGTTTTATT
1 TTAGGGTTTTAAT
8372629 TTAGGGTTTTAAT
1 TTAGGGTTTTAAT
8372642 TTAGGGTTT
1 TTAGGGTTT
8372651 GCAATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.26, T:0.57
Consensus pattern (13 bp):
TTAGGGTTTTAAT
Found at i:8372656 original size:14 final size:13
Alignment explanation
Indices: 8372616--8372658 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
8372606 CAGATTAGGG
* *
8372616 TTAGGGTTTTATT
1 TTAGGGTTTCAAT
*
8372629 TTAGGGTTTTAAT
1 TTAGGGTTTCAAT
8372642 TTAGGGTTTGCAAT
1 TTAGGGTTT-CAAT
8372656 TTA
1 TTA
8372659 AAGTTTAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 21 0.78
14 6 0.22
ACGTcount: A:0.21, C:0.02, G:0.23, T:0.53
Consensus pattern (13 bp):
TTAGGGTTTCAAT
Found at i:8372679 original size:21 final size:20
Alignment explanation
Indices: 8372632--8372679 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
8372622 TTTTATTTTA
*
8372632 GGGTTTTAATTTAGGGTTTG
1 GGGTTTAAATTTAGGGTTTG
***
8372652 CAATTTAAAGTTTAGGGTTTG
1 GGGTTTAAA-TTTAGGGTTTG
8372673 GGGTTTA
1 GGGTTTA
8372680 GGGCTAGGTG
Statistics
Matches: 20, Mismatches: 7, Indels: 1
0.71 0.25 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.21, C:0.02, G:0.31, T:0.46
Consensus pattern (20 bp):
GGGTTTAAATTTAGGGTTTG
Found at i:8374765 original size:20 final size:20
Alignment explanation
Indices: 8374742--8374802 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
8374732 GTTTTACCCG
8374742 ATTTGACCAAGTTTGACTTT
1 ATTTGACCAAGTTTGACTTT
*
8374762 ATTTGACCATGTTTGA-TTAT
1 ATTTGACCAAGTTTGACTT-T
*
8374782 ATTTGATCAGAG-TTGACTTT
1 ATTTGACCA-AGTTTGACTTT
8374802 A
1 A
8374803 GGATATTTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 2 0.06
20 30 0.86
21 3 0.09
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.46
Consensus pattern (20 bp):
ATTTGACCAAGTTTGACTTT
Found at i:8375106 original size:13 final size:13
Alignment explanation
Indices: 8375076--8375136 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
8375066 GGTATATTTG
*
8375076 TTTTTTGTTCTTA
1 TTTTTTGTTATTA
8375089 CTTTTTT-TTATTA
1 -TTTTTTGTTATTA
*
8375102 TTTTTTGTTGTT-
1 TTTTTTGTTATTA
* *
8375114 TTTTTGTGTTTTTT
1 TTTTT-TGTTATTA
8375128 TTTTTTGTT
1 TTTTTTGTT
8375137 GTCAAGGTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 11 0.27
13 19 0.46
14 11 0.27
ACGTcount: A:0.05, C:0.03, G:0.10, T:0.82
Consensus pattern (13 bp):
TTTTTTGTTATTA
Found at i:8375336 original size:22 final size:21
Alignment explanation
Indices: 8375281--8375337 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
8375271 GGATTTTGAA
* *
8375281 ATTATGCCTAGAGGACTTTAG
1 ATTATGCCCAGAGCACTTTAG
* *
8375302 AGTTGTGCTCAGAGCACTTTAAG
1 A-TTATGCCCAGAGCACTTT-AG
8375325 ATTATGCCCAGAG
1 ATTATGCCCAGAG
8375338 AGTTGTGCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 1 0.04
22 24 0.86
23 3 0.11
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (21 bp):
ATTATGCCCAGAGCACTTTAG
Found at i:8375387 original size:22 final size:23
Alignment explanation
Indices: 8375336--8375389 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
8375326 TTATGCCCAG
*
8375336 AGAGTTGTG-CCTAAAGGACTTT
1 AGAGTTGTGCCCGAAAGGACTTT
*
8375358 -GAAATTGTGCCCGAAA-GACTTT
1 AG-AGTTGTGCCCGAAAGGACTTT
8375380 AGAGTTGTGC
1 AGAGTTGTGC
8375390 TCGGAGGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
21 1 0.04
22 19 0.73
23 6 0.23
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (23 bp):
AGAGTTGTGCCCGAAAGGACTTT
Found at i:8375466 original size:40 final size:40
Alignment explanation
Indices: 8375411--8375755 Score: 229
Period size: 40 Copynumber: 8.7 Consensus size: 40
8375401 TGAGACTTTA
*
8375411 GAAATCTTTCAAAAATTTAAGATTTTGCTTAAAGGTCTTG
1 GAAATCATTCAAAAATTTAAGATTTTGCTTAAAGGTCTTG
* * * *
8375451 GAAATCTTTTAAAAATTTAAAATTTTGCCTAGAA-GTCTTG
1 GAAATCATTCAAAAATTTAAGATTTTGCTTA-AAGGTCTTG
* *
8375491 AAAATCATTCAAAAATTTAAGATTTTGCCTT-GAGGTCTTG
1 GAAATCATTCAAAAATTTAAGATTTTG-CTTAAAGGTCTTG
* *
8375531 GAAATCATTTAAAAATTTAA-AGTTTTGCTCGAAA-GTCTTG
1 GAAATCATTCAAAAATTTAAGA-TTTTGCT-TAAAGGTCTTG
* * * ** * *
8375571 GAATTCATTAAAAAATTTAA-AGTTTGCCCAGAGGTTTTG
1 GAAATCATTCAAAAATTTAAGATTTTGCTTAAAGGTCTTG
* ***
8375610 CAAATCATTCAAAAATTTATA-ATTTTGCCCGAAGGTCTTG
1 GAAATCATTCAAAAATTTA-AGATTTTGCTTAAAGGTCTTG
* * * * * ** *
8375650 GAATTCAGT-AAAATATCTAAGGTTTTACTTGGAGATCTTG
1 GAAATCATTCAAAA-ATTTAAGATTTTGCTTAAAGGTCTTG
* * * * * *
8375690 TAAATCATTTAAAAATTTAATATTTTACTTGGAA-GTCTTA
1 GAAATCATTCAAAAATTTAAGATTTTGCTT-AAAGGTCTTG
* * * *
8375730 GAATTCTTTCAAAATTTTAGGATTTT
1 GAAATCATTCAAAAATTTAAGATTTT
8375756 ACCCAGAGGT
Statistics
Matches: 240, Mismatches: 53, Indels: 24
0.76 0.17 0.08
Matches are distributed among these distances:
38 2 0.01
39 35 0.15
40 192 0.80
41 11 0.05
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (40 bp):
GAAATCATTCAAAAATTTAAGATTTTGCTTAAAGGTCTTG
Found at i:8375545 original size:80 final size:81
Alignment explanation
Indices: 8375418--8375755 Score: 325
Period size: 80 Copynumber: 4.2 Consensus size: 81
8375408 TTAGAAATCT
* * *
8375418 TTCAAAAATTTAAGATTTTG-CTTAAAGGTCTTGGAAATCTTTTAAAAATTTAAAATTTTGCCTA
1 TTCAAAAATTTAAGATTTTGCCTTAGAGGTCTTGGAAATCATTTAAAAATTTAAAATTTTGCCTC
*
8375482 GAAGTCTTGAAAATCA
66 GAAGTCTTGAAATTCA
*
8375498 TTCAAAAATTTAAGATTTTGCCTT-GAGGTCTTGGAAATCATTTAAAAATTTAAAGTTTTG-CTC
1 TTCAAAAATTTAAGATTTTGCCTTAGAGGTCTTGGAAATCATTTAAAAATTTAAAATTTTGCCTC
*
8375561 GAAAGTCTTGGAATTCA
66 G-AAGTCTTGAAATTCA
* * * * * * *
8375578 TTAAAAAATTTAA-AGTTTGCC-CAGAGGTTTTGCAAATCATTCAAAAATTTATAATTTTGCC-C
1 TTCAAAAATTTAAGATTTTGCCTTAGAGGTCTTGGAAATCATTTAAAAATTTAAAATTTTGCCTC
*
8375640 GAAGGTCTTGGAATTCA
66 GAA-GTCTTGAAATTCA
* * * * * * * * * *
8375657 GT-AAAATATCTAAGGTTTT-ACTTGGAGATCTTGTAAATCATTTAAAAATTTAATATTTTACTT
1 TTCAAAA-ATTTAAGATTTTGCCTTAGAGGTCTTGGAAATCATTTAAAAATTTAAAATTTTGCCT
* *
8375720 GGAAGTCTT-AGAATTCT
65 CGAAGTCTTGA-AATTCA
* *
8375737 TTCAAAATTTTAGGATTTT
1 TTCAAAAATTTAAGATTTT
8375756 ACCCAGAGGT
Statistics
Matches: 210, Mismatches: 37, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
78 6 0.03
79 63 0.30
80 131 0.62
81 10 0.05
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.40
Consensus pattern (81 bp):
TTCAAAAATTTAAGATTTTGCCTTAGAGGTCTTGGAAATCATTTAAAAATTTAAAATTTTGCCTC
GAAGTCTTGAAATTCA
Found at i:8375689 original size:119 final size:119
Alignment explanation
Indices: 8375445--8375709 Score: 304
Period size: 119 Copynumber: 2.2 Consensus size: 119
8375435 TTGCTTAAAG
* * *
8375445 GTCTTGGAAATCTTTTAAAAATTTAAAATTTTGCCTAGAAGTCTTGAAAATCATTCAAAAATTTA
1 GTCTTGGAAATCATTTAAAAATTT-AAAGTTTGCCCAGAAGTCTTGAAAATCATTCAAAAATTTA
* * * *
8375510 AGATTTTGCCTTGAGGTCTTGGAAATCATTTAAAAATTTAAAGTTTTGCTCGAAA
65 AGATTTTGCCTCGAGGTCTTGGAAATCATGTAAAAATCTAAAGTTTTACTCGAAA
* * * * *
8375565 GTCTTGGAATTCATTAAAAAATTTAAAGTTTGCCCAGAGGTTTTGCAAATCATTCAAAAATTTAT
1 GTCTTGGAAATCATTTAAAAATTTAAAGTTTGCCCAGAAGTCTTGAAAATCATTCAAAAATTTA-
* * * *
8375630 A-ATTTTGCC-CGAAGGTCTTGGAATTCA-GTAAAATATCTAAGGTTTTACTTG-GA
65 AGATTTTGCCTCG-AGGTCTTGGAAATCATGTAAAA-ATCTAAAGTTTTACTCGAAA
*
8375683 GATCTTGTAAATCATTTAAAAATTTAA
1 G-TCTTGGAAATCATTTAAAAATTTAA
8375710 TATTTTACTT
Statistics
Matches: 122, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
118 8 0.07
119 92 0.75
120 22 0.18
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (119 bp):
GTCTTGGAAATCATTTAAAAATTTAAAGTTTGCCCAGAAGTCTTGAAAATCATTCAAAAATTTAA
GATTTTGCCTCGAGGTCTTGGAAATCATGTAAAAATCTAAAGTTTTACTCGAAA
Found at i:8375726 original size:159 final size:159
Alignment explanation
Indices: 8375451--8375814 Score: 389
Period size: 159 Copynumber: 2.3 Consensus size: 159
8375441 AAAGGTCTTG
* * * * * *
8375451 GAAATCTTTTAAAAATTTAAAATTTTGCCTAGAA-GTCTTGAAAATCATTCAAAAATTTAAGATT
1 GAAATCTTTCAAAAATTTATAATTTTGCC-CGAAGGTCTTGAAATTCAGTCAAAAATCTAAGATT
* * * *
8375515 TTGCCTTGAGGTCTTGGAAATCATTTAAAAATTTAAAGTTTTGCTCGAAAGTCTTGGAATTCATT
65 TTGACTTGAGATCTTGGAAATCATTTAAAAATTTAAAGTTTTACTCGAAAGTCTTAGAATTCATT
*
8375580 AAAAAATTTA-AAGTTTGCCCAGAGGTTTT
130 AAAAAATTTAGAAGTTTACCCAGAGGTTTT
* * *
8375609 GCAAATCATTCAAAAATTTATAATTTTGCCCGAAGGTCTTGGAATTCAGT-AAAATATCTAAGGT
1 G-AAATCTTTCAAAAATTTATAATTTTGCCCGAAGGTCTTGAAATTCAGTCAAAA-ATCTAAGAT
* * *
8375673 TTT-ACTTGGAGATCTTGTAAATCATTTAAAAATTTAATA-TTTTACTTGGAAGTCTTAGAATTC
64 TTTGACTT-GAGATCTTGGAAATCATTTAAAAATTTAA-AGTTTTACTCGAAAGTCTTAGAATTC
* * * * *
8375736 TTTCAAAATTTTAGGATTTTACCCAGAGGTTTT
127 ATTAAAAAATTTAGAAGTTTACCCAGAGGTTTT
* * * *
8375769 GAAATTTTTTC-AAAATTTTTAGCTTTTGCCCGGAGGTCTTGAAATT
1 GAAA-TCTTTCAAAAATTTATA-ATTTTGCCCGAAGGTCTTGAAATT
8375815 TTTGTACTTA
Statistics
Matches: 170, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
158 11 0.06
159 116 0.68
160 43 0.25
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (159 bp):
GAAATCTTTCAAAAATTTATAATTTTGCCCGAAGGTCTTGAAATTCAGTCAAAAATCTAAGATTT
TGACTTGAGATCTTGGAAATCATTTAAAAATTTAAAGTTTTACTCGAAAGTCTTAGAATTCATTA
AAAAATTTAGAAGTTTACCCAGAGGTTTT
Found at i:8375780 original size:40 final size:40
Alignment explanation
Indices: 8375731--8375817 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
8375721 GAAGTCTTAG
* *
8375731 AATTCTTTCAAAA-TTTTAGGATTTTACCCAGAGGTTTTGA
1 AATTTTTTCAAAATTTTTA-GATTTTACCCAGAGGTCTTGA
* * *
8375771 AATTTTTTCAAAATTTTTAGCTTTTGCCCGGAGGTCTTGA
1 AATTTTTTCAAAATTTTTAGATTTTACCCAGAGGTCTTGA
8375811 AATTTTT
1 AATTTTT
8375818 GTACTTATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 36 0.88
41 5 0.12
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (40 bp):
AATTTTTTCAAAATTTTTAGATTTTACCCAGAGGTCTTGA
Found at i:8377463 original size:23 final size:23
Alignment explanation
Indices: 8377423--8377471 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
8377413 ATTCATCATT
8377423 TTTCATTATTATTATTATTTTTTG
1 TTTCATTATTATTATTA-TTTTTG
* *
8377447 TTTC-TTATTTTTCTTATTTTTG
1 TTTCATTATTATTATTATTTTTG
8377469 TTT
1 TTT
8377472 GTTTGTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 9 0.39
23 10 0.43
24 4 0.17
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (23 bp):
TTTCATTATTATTATTATTTTTG
Found at i:8382057 original size:39 final size:39
Alignment explanation
Indices: 8381934--8382076 Score: 155
Period size: 39 Copynumber: 3.7 Consensus size: 39
8381924 ATTCATATAG
* *
8381934 TATC-TATTAAGATGTACATGA-ATTGGAATGTATGTTCT
1 TATCTTATTAAAATGTACATGAGA-TGGAATGTATGTACT
* * * *
8381972 TATCTTACTAAAATGCACATGAGAGGGAATGCATGTACT
1 TATCTTATTAAAATGTACATGAGATGGAATGTATGTACT
* * *
8382011 TATCTTATTAAAATGTGCATGAGATGGAGTGTGTGTACT
1 TATCTTATTAAAATGTACATGAGATGGAATGTATGTACT
* * *
8382050 TATCTTATTAAGATATTCATGAGATGG
1 TATCTTATTAAAATGTACATGAGATGG
8382077 GGACAGGTAC
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
38 4 0.05
39 82 0.94
40 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (39 bp):
TATCTTATTAAAATGTACATGAGATGGAATGTATGTACT
Found at i:8384326 original size:11 final size:12
Alignment explanation
Indices: 8384295--8384326 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8384285 ATTAGTTTAG
8384295 GGTTTGAGGGTT
1 GGTTTGAGGGTT
8384307 GGTTTGAGGGTT
1 GGTTTGAGGGTT
8384319 GG-TTGAGG
1 GGTTTGAGG
8384327 TTTAAGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.09, C:0.00, G:0.53, T:0.38
Consensus pattern (12 bp):
GGTTTGAGGGTT
Found at i:8384389 original size:14 final size:13
Alignment explanation
Indices: 8384347--8384381 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8384337 AGCATTAGGG
* *
8384347 TTAGGGTTTTATT
1 TTAGGGTTTCAAT
8384360 TTAGGGTTTCAAT
1 TTAGGGTTTCAAT
8384373 TTAGGGTTT
1 TTAGGGTTT
8384382 GAAGTTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.17, C:0.03, G:0.26, T:0.54
Consensus pattern (13 bp):
TTAGGGTTTCAAT
Found at i:8385176 original size:143 final size:142
Alignment explanation
Indices: 8384919--8385184 Score: 319
Period size: 143 Copynumber: 1.9 Consensus size: 142
8384909 TCATTTTTGA
* * *
8384919 GATTTCAAAGCATCAAAAATCATTATATATTATAAAATTGAGATTTGAAAATATTCATAAAAATT
1 GATTTCAAAGCATCAAAAATCATCAAATATTATAAAATTGAGATATGAAAATATTCATAAAAATT
*** * *
8384984 CGATTTCAGGAATGTGAAATTATAAAATTATCCCTAAGGGATATTTGGTAATTTCACACCTCCTA
66 CGACCACAGGAATGTCAAATTATAAAATGATCCCTAAGGGATATTTGGTAATTTCACACCTCCTA
8385049 GGGTACTATTAT
131 GGGTACTATTAT
*
8385061 GATTTCAAATGCA-CTAAAAATCATCAAATATTATAAAATCT-TGATATGAAAAGT-TTCATGAA
1 GATTTCAAA-GCATC-AAAAATCATCAAATATTATAAAAT-TGAGATATGAAAA-TATTCAT-AA
* * *
8385123 AAATT-GACCACAGGAA-GTCAAATTTTGAAATGA-CCCTTAAGGGGTATTTTGGTAATTTCACA
61 AAATTCGACCACAGGAATGTCAAATTATAAAATGATCCC-TAAGGGATA-TTTGGTAATTTCACA
8385185 TCTCTCAAGG
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
141 3 0.03
142 31 0.30
143 62 0.59
144 9 0.09
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (142 bp):
GATTTCAAAGCATCAAAAATCATCAAATATTATAAAATTGAGATATGAAAATATTCATAAAAATT
CGACCACAGGAATGTCAAATTATAAAATGATCCCTAAGGGATATTTGGTAATTTCACACCTCCTA
GGGTACTATTAT
Found at i:8386504 original size:19 final size:20
Alignment explanation
Indices: 8386472--8386512 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
8386462 GTTGGTAAGG
8386472 TTATATTTTCAAAATCA-AT
1 TTATATTTTCAAAATCATAT
8386491 TTAT-TTTTCAAAAATCATAT
1 TTATATTTTC-AAAATCATAT
8386511 TT
1 TT
8386513 TAAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.25
19 11 0.55
20 4 0.20
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATATTTTCAAAATCATAT
Found at i:8387793 original size:18 final size:17
Alignment explanation
Indices: 8387738--8387793 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
8387728 AAATTATAAT
*
8387738 AACAAATAAAATGAGATA
1 AACAAATAAAA-GAAATA
*
8387756 AACACAA-AATAAGAATTA
1 AACA-AATAA-AAGAAATA
8387774 AACAAATAAAAGATAATA
1 AACAAATAAAAGA-AATA
8387792 AA
1 AA
8387794 AACAAAGATA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 6 0.19
18 21 0.68
19 4 0.13
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.16
Consensus pattern (17 bp):
AACAAATAAAAGAAATA
Found at i:8387853 original size:25 final size:24
Alignment explanation
Indices: 8387820--8387896 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 24
8387810 TAAAGTTATA
8387820 ATAAA-AATAAATAACTAATAAAAT
1 ATAAACAATAAATAA-TAATAAAAT
* *
8387844 ATAAACAATAACTAATAAAAGAAAT
1 ATAAACAATAAATAATAATA-AAAT
*
8387869 ATAAACATAAAAGATAAATAATAAAAT
1 ATAAACA-ATAA-AT-AATAATAAAAT
8387896 A
1 A
8387897 AATAACTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
24 9 0.21
25 19 0.44
26 3 0.07
27 6 0.14
28 6 0.14
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.22
Consensus pattern (24 bp):
ATAAACAATAAATAATAATAAAAT
Found at i:8387879 original size:31 final size:30
Alignment explanation
Indices: 8387836--8387901 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
8387826 ATAAATAACT
* *
8387836 AATAAAATATAAACA-ATAACTAATAAAAGA
1 AATAAAACATAAA-AGATAAATAATAAAAGA
*
8387866 AATATAAACATAAAAGATAAATAATAAAATA
1 AATA-AAACATAAAAGATAAATAATAAAAGA
8387897 AATAA
1 AATAA
8387902 CTAATAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 6 0.19
31 25 0.81
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (30 bp):
AATAAAACATAAAAGATAAATAATAAAAGA
Found at i:8388305 original size:19 final size:19
Alignment explanation
Indices: 8388258--8388315 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 19
8388248 AATTTTTCGA
* *
8388258 TGAATTTTTTGGTGAAGGT
1 TGAATTTTTTGATGAAAGT
* *
8388277 TGAAGTTTTTGATGAAATT
1 TGAATTTTTTGATGAAAGT
* *
8388296 TGAATTTTTTAATTAAAGT
1 TGAATTTTTTGATGAAAGT
8388315 T
1 T
8388316 TACAGTTTTC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (19 bp):
TGAATTTTTTGATGAAAGT
Found at i:8388611 original size:25 final size:24
Alignment explanation
Indices: 8388578--8388648 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
8388568 CAATTGATAG
*
8388578 ATTTTTTTATTTTATTTTTTTATC
1 ATTTATTTATTTTATTTTTTTATC
* *
8388602 ATTTAGTTTA-TTTATTTGATTTATT
1 ATTTA-TTTATTTTATTT-TTTTATC
*
8388627 ATTTATTTATTTAACTTTTTTT
1 ATTTATTTATTTTA-TTTTTTT
8388649 TTCAAATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
24 15 0.39
25 20 0.53
26 3 0.08
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (24 bp):
ATTTATTTATTTTATTTTTTTATC
Found at i:8388617 original size:4 final size:4
Alignment explanation
Indices: 8388578--8388639 Score: 56
Period size: 4 Copynumber: 15.2 Consensus size: 4
8388568 CAATTGATAG
* * *
8388578 ATTT TTTT ATTTT ATTT TTTT A-TC ATTT AGTTT ATTT ATTT GATTT A-TT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT -ATTT ATTT
8388627 ATTT ATTT ATTT A
1 ATTT ATTT ATTT A
8388640 ACTTTTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
3 5 0.11
4 30 0.64
5 12 0.26
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:8389050 original size:24 final size:24
Alignment explanation
Indices: 8389018--8389065 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
8389008 ACGTCCAATA
8389018 TGTACCCCATAGCGAGGCCCATTG
1 TGTACCCCATAGCGAGGCCCATTG
8389042 TGTACCCCATAGCGAGGCCCATTG
1 TGTACCCCATAGCGAGGCCCATTG
8389066 CATAAGTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.25, T:0.21
Consensus pattern (24 bp):
TGTACCCCATAGCGAGGCCCATTG
Found at i:8389178 original size:3 final size:3
Alignment explanation
Indices: 8389170--8389203 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
8389160 TATACGTAAT
8389170 TAA TAA TAA TAA TAA TAA TAA -AA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8389204 TTATTATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8393143 original size:12 final size:13
Alignment explanation
Indices: 8393126--8393162 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
8393116 GTACATACAC
8393126 ACCATTCAGCA-A
1 ACCATTCAGCATA
*
8393138 ACCATTCAACATA
1 ACCATTCAGCATA
8393151 A-CATTCAGCATA
1 ACCATTCAGCATA
8393163 CAATTCAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 20 0.91
13 2 0.09
ACGTcount: A:0.43, C:0.30, G:0.05, T:0.22
Consensus pattern (13 bp):
ACCATTCAGCATA
Found at i:8393948 original size:187 final size:186
Alignment explanation
Indices: 8393619--8394074 Score: 539
Period size: 187 Copynumber: 2.4 Consensus size: 186
8393609 ATAAAAATTG
* * * * *
8393619 TTATTAAAGGCGTTT-TTCTAGAAAAAATACCTTCAATAATTATATACAAAAATTAAAACAAATT
1 TTATTAAAGGCGTTTGTTATA-AAAAAAAACCTTCAATAATTATGTACAAAATTTAAAAGAAATT
* * ***
8393683 AATGAAGGTATTTTCCTAGAATAAACGTTTTCACTAACTATCTTAAAATTTGAGTACTAGTATAT
65 ATTGAAGGTATTTTTCTAGAATAAACACCTTCACTAACTATCTTAAAATTTGAGTACTAGTATAT
* ** * * *
8393748 TGAATGCTTTTTCAATAGAAGATGTTTTTAATAATTCCAAAATTTTTTA-AACAGAAA
130 TGAATGCTTTTTCAATAGAAGACGCCTTTAATAATCCCAAAACTTTTTAGAA-AAAAA
* *
8393805 TTATTAAAGGCGTTTGTTAT-CAAAAAAACGTCTTCAATAATTATGTACAAAATTTAAATGAAAT
1 TTATTAAAGGCGTTTGTTATAAAAAAAAAC--CTTCAATAATTATGTACAAAATTTAAAAGAAAT
* * *
8393869 TATTAAAGGCATTTTTCTAGAATAAACACCTTCACTAACCT-T-TTAAAATTTGAGTAAC-GGTA
64 TATTGAAGGTATTTTTCTAGAATAAACACCTTCACTAA-CTATCTTAAAATTTGAGT-ACTAGTA
* *
8393931 TATTGAAGGTG-TTTTTCACTAGAAGCCGCCTTTAATAATCCCAAAACTTTTTAGAAAAAAA
127 TATTGAA--TGCTTTTTCAATAGAAGACGCCTTTAATAATCCCAAAACTTTTTAGAAAAAAA
* *
8393992 TTATTGAAGGCATTTGTTATAAAAAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAAGAAA
1 TTATTAAAGGCGTTTGTTAT---AAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAAGAAA
8394057 TTATTGAAGGTATTTTTC
63 TTATTGAAGGTATTTTTC
8394075 AGTAAAAGAC
Statistics
Matches: 229, Mismatches: 29, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
185 7 0.03
186 38 0.17
187 123 0.54
188 6 0.03
189 47 0.21
191 8 0.03
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (186 bp):
TTATTAAAGGCGTTTGTTATAAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAAGAAATTA
TTGAAGGTATTTTTCTAGAATAAACACCTTCACTAACTATCTTAAAATTTGAGTACTAGTATATT
GAATGCTTTTTCAATAGAAGACGCCTTTAATAATCCCAAAACTTTTTAGAAAAAAA
Found at i:8394074 original size:127 final size:124
Alignment explanation
Indices: 8393931--8394198 Score: 351
Period size: 127 Copynumber: 2.1 Consensus size: 124
8393921 AGTAACGGTA
* * *
8393931 TATTGAAGGTGTTTTTCACTAGAAGCCGCCTTTAATAATCCCAAAACTTTTTAGAA-AAAAATTA
1 TATTGAAGGTATTTTTCACTAAAAGACGCCTTTAATAATCCCAAAACTTTTTA-AAGAAAAATTA
8393995 TTGAAGGCATTTGTTATAAAAAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAA-GAAAT
65 TTGAAGGCATTTGTTAT---AAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAACG-AAT
* * * *
8394058 TATTGAAGGTATTTTTCAGTAAAAGACGCCTTTAATAATCTCAAAATTTTTTAAAGGAAAATTAT
1 TATTGAAGGTATTTTTCACTAAAAGACGCCTTTAATAATCCCAAAACTTTTTAAAGAAAAATTAT
* ** * **
8394123 TGAAGGCATTTGTTATCAAAAAATGCCTTCGATAATTATGTGTAAAATTTAAAACGAAT
66 TGAAGGCATTTGTTATAAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAACGAAT
*
8394182 TATTAAAGGTATTTTTC
1 TATTGAAGGTATTTTTC
8394199 TAGAATAAAT
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
124 51 0.41
125 1 0.01
126 2 0.02
127 71 0.57
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (124 bp):
TATTGAAGGTATTTTTCACTAAAAGACGCCTTTAATAATCCCAAAACTTTTTAAAGAAAAATTAT
TGAAGGCATTTGTTATAAAAAAAAACCTTCAATAATTATGTACAAAATTTAAAACGAAT
Found at i:8394151 original size:62 final size:59
Alignment explanation
Indices: 8393958--8394151 Score: 142
Period size: 62 Copynumber: 3.1 Consensus size: 59
8393948 ACTAGAAGCC
* *
8393958 GCCTTTAATAATCCCAAAACTTTTTAGAAAAAAATTATTGAAGGCATTTGTTATAAAAAAAAAAA
1 GCCTTTAATAATCTCAAAA-TTTTTA-AAGAAAATTATTGAAGGCATTTGTTAT----AAAAAAA
* * * * * * *
8394023 ACCTTCAATAATTATGTACAAAA-TTTAAAAG-AAATTATTGAAGGTATTT-TTCAGTAAAAGAC
1 GCCTT---TAATAATCT-CAAAATTTTTAAAGAAAATTATTGAAGGCATTTGTT-A-TAAAAAAA
*
8394085 GCCTTTAATAATCTCAAAATTTTTTAAAGGAAAATTATTGAAGGCATTTGTTATCAAAAAAT
1 GCCTTTAATAATCTCAAAA-TTTTTAAA-GAAAATTATTGAAGGCATTTGTTAT-AAAAAAA
8394147 GCCTT
1 GCCTT
8394152 CGATAATTAT
Statistics
Matches: 101, Mismatches: 16, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
58 5 0.05
59 7 0.07
60 6 0.06
61 2 0.02
62 37 0.37
63 2 0.02
64 2 0.02
65 22 0.22
66 3 0.03
67 4 0.04
68 6 0.06
69 5 0.05
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (59 bp):
GCCTTTAATAATCTCAAAATTTTTAAAGAAAATTATTGAAGGCATTTGTTATAAAAAAA
Found at i:8394283 original size:187 final size:183
Alignment explanation
Indices: 8394058--8394843 Score: 695
Period size: 187 Copynumber: 4.2 Consensus size: 183
8394048 TAAAAGAAAT
** * * * *
8394058 TATTGAAGGTATTTTTCAGTAAAAGACGCCTTTAATAATCTCAAAATTTTTTAAAGGAAAATTAT
1 TATTGAAGGCGTTTTTCACTAGAAGACGCATTTAATAATC-CAAAAATTTTTAAA-G-AAATTAT
* * * ** *
8394123 TGAAGGCATTTGTTATCAAAAAATGCCTTCGATAATTATGTGTA-AAATTTAAAACGAATTATTA
63 TAAAGGCATTTCTTATCAAAAAATGCCTTCAATAATTATGTACATAAA-TTAAAA-GAATTATTG
*
8394187 AAGGTATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAATACGGGTA
126 AAGGTATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAATACGGGAA
* * * *
8394245 TATTGAAAGCGTTTTTCACTAGAAGATGCTTTTAATAATCCTAAGAATTTTTAGAAAGAAATTAT
1 TATTGAAGGCGTTTTTCACTAGAAGACGCATTTAATAATCC-AAAAATTTTT--AAAGAAATTAT
* * * ** * *
8394310 TAAAGGCGTTTATTATAAAAAAAACACCTTTAATAATTATGTATA-AAATTTAAAAAGAATTATT
63 TAAAGGCATTTCTTAT-CAAAAAATGCCTTCAATAATTATGTACATAAA-TT-AAAAGAATTATT
* * * * * *
8394374 GAAGGTATTTTGCTAGAATAAATGCCTTTACTAACCATCTTCAAATTTGAGTACTGGTA
125 GAAGGTATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAATACGGGAA
* * *
8394433 TATTTAAGGCATTTTTCACTAGAAGACACATTTAATAATCTCAAAAATTTTTAAAATGAAATTAT
1 TATTGAAGGCGTTTTTCACTAGAAGACGCATTTAATAATC-CAAAAATTTTT-AAA-GAAATTAT
* ** * * *
8394498 TTAAGGTGTTTCTTCTTAAAAAATGCCTTCAATAATTATGTACATAAATTAAATAGAATTAGTGA
63 TAAAGGCATTTCTTATCAAAAAATGCCTTCAATAATTATGTACATAAATTAAA-AGAATTATTGA
** * *** * *
8394563 AGCCATTTTTCTAGAATAAATGCCTTCACTAACCGTAAAAAAATTT-AAGT-TGTAGAA
127 AGGTATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAA-TACG-GGAA
* * * *
8394620 TATTGAAGGTGTTTTTCACT-GAAAGACACATTTAATAATACC-AAAAGTTTTAATAGAAAATTG
1 TATTGAAGGCGTTTTTCACTAG-AAGACGCATTTAATAAT-CCAAAAATTTTTAA-AG-AAATTA
*** * * *
8394683 TTAAATATATTTCTTCTCAAAAAATGCCTACAATAATTATGTGCATAAATTAAAAGGAATTGA-T
62 TTAAAGGCATTTCTTATCAAAAAATGCCTTCAATAATTATGTACATAAATTAAAA-GAATT-ATT
* * * ** ** *
8394747 GAAGGTATTTTTCTACAATAAATACCTTCACTAACCGTCTTAAAATTTGAGCAATGAAA
125 GAAGGTATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAATACGGGAA
* * * *
8394806 TATTGAAGGCGTTTTGCACTAAAAGATGCCTTTAATAA
1 TATTGAAGGCGTTTTTCACTAGAAGACGCATTTAATAA
8394844 ATTCCTTCAA
Statistics
Matches: 492, Mismatches: 87, Indels: 41
0.79 0.14 0.07
Matches are distributed among these distances:
185 4 0.01
186 147 0.30
187 176 0.36
188 157 0.32
189 8 0.02
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (183 bp):
TATTGAAGGCGTTTTTCACTAGAAGACGCATTTAATAATCCAAAAATTTTTAAAGAAATTATTAA
AGGCATTTCTTATCAAAAAATGCCTTCAATAATTATGTACATAAATTAAAAGAATTATTGAAGGT
ATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAATACGGGAA
Found at i:8394328 original size:314 final size:312
Alignment explanation
Indices: 8393774--8394384 Score: 849
Period size: 314 Copynumber: 2.0 Consensus size: 312
8393764 AGAAGATGTT
* *
8393774 TTTAATAATTCCAAAATTTTTTAAACAGAAATTATTAAAGGCGTTTGTTATCAAAAAAACGTCTT
1 TTTAATAATTCCAAAATTTTTTAAACAGAAATTATTAAAGGCATTTGTTATCAAAAAAACGCCTT
*
8393839 CAATAATTATGTACAAAATTTAAATGAAATTATTAAAGGCATTTTTCTAGAATAAACACCTTCAC
66 CAATAATTATGTACAAAATTTAAACGAAATTATTAAAGGCATTTTTCTAGAATAAACACCTTCAC
* * * * *
8393904 TAACCTTTTAAAATTTGAGTAACGGTATATTGAAGGTGTTTTTCACTAGAAGCCGCCTTTAATAA
131 TAACCTCTTAAAATTTGAATAACGGTATATTGAAAGCGTTTTTCACTAGAAGACGCCTTTAATAA
* *
8393969 TCCCAAAACTTTTTAGAAAAAAATTATTGAAGGCATTTGTTATAAAAAAAAAAAACCTTCAATAA
196 TCCCAAAACTTTTTAGAAAAAAATTATTAAAGGCATTTATTAT--AAAAAAAAAACCTTCAATAA
8394034 TTATGTACAAAATTT-AAAAGAAATTATTGAAGGTATTTTTCAGTAAAAGACGCC
259 TTATGTACAAAATTTAAAAAG-AATTATTGAAGGTATTTTTCAGTAAAAGACGCC
* * *
8394088 TTTAATAA-TCTCAAAATTTTTTAAA-GGAAAATTATTGAAGGCATTTGTTATC-AAAAAATGCC
1 TTTAATAATTC-CAAAATTTTTTAAACAG-AAATTATTAAAGGCATTTGTTATCAAAAAAACGCC
* ** * **
8394150 TTCGATAATTATGTGTAAAATTTAAAACG-AATTATTAAAGGTATTTTTCTAGAATAAATGCCTT
64 TTCAATAATTATGTACAAAATTT-AAACGAAATTATTAAAGGCATTTTTCTAGAATAAACACCTT
* *
8394214 CACTAACCATCTTAAAATTTGAAT-ACGGGTATATTGAAAGCGTTTTTCACTAGAAGATGCTTTT
128 CACTAACC-TCTTAAAATTTGAATAAC-GGTATATTGAAAGCGTTTTTCACTAGAAGACGCCTTT
* * * * *
8394278 AATAATCCTAAGAA-TTTTTAGAAAGAAATTATTAAAGGCGTTTATTATAAAAAAAACACCTTTA
191 AATAATCCCAA-AACTTTTTAGAAAAAAATTATTAAAGGCATTTATTATAAAAAAAAAACCTTCA
*
8394342 ATAATTATGTATAAAATTTAAAAAGAATTATTGAAGGTATTTT
255 ATAATTATGTACAAAATTTAAAAAGAATTATTGAAGGTATTTT
8394385 GCTAGAATAA
Statistics
Matches: 263, Mismatches: 27, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
312 50 0.19
313 78 0.30
314 133 0.51
315 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (312 bp):
TTTAATAATTCCAAAATTTTTTAAACAGAAATTATTAAAGGCATTTGTTATCAAAAAAACGCCTT
CAATAATTATGTACAAAATTTAAACGAAATTATTAAAGGCATTTTTCTAGAATAAACACCTTCAC
TAACCTCTTAAAATTTGAATAACGGTATATTGAAAGCGTTTTTCACTAGAAGACGCCTTTAATAA
TCCCAAAACTTTTTAGAAAAAAATTATTAAAGGCATTTATTATAAAAAAAAAACCTTCAATAATT
ATGTACAAAATTTAAAAAGAATTATTGAAGGTATTTTTCAGTAAAAGACGCC
Found at i:8401153 original size:142 final size:142
Alignment explanation
Indices: 8400902--8401162 Score: 310
Period size: 142 Copynumber: 1.8 Consensus size: 142
8400892 TAAATTAACA
* * * *
8400902 ATTATTGTTCTATTTTAATAGTTTTGATAGTTTCAATACATGATATTAAACTTATCGAAAGTTTT
1 ATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTATCGAAAGTATT
* * * *
8400967 GAACTTAGTTGACATGGATGATATGTATGAAAAAGTTATTGTTTATGTATATTTAGATAAAAAAA
66 GAACTTAGTTGACATCGATGATATGGAGGAAAAAGTTATCGTTTATGTATATTTAGATAAAAAAA
8401032 AATAAATTTGTT
131 AATAAATTTGTT
* * * **
8401044 ATTATTGTTGTATTTTAACAGTTTGGATAGCTTCAATACTTGATATTAAACTTGTCCGATTG-AT
1 ATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTAT-CGAAAGTAT
* *** * * *
8401108 TGAACTTGGTTTTTA-CGATTGATATGGGGGAAAAAGTTGTCGTTTATGTCTATTT
65 TGAACTTAGTTGACATCGA-TGATATGGAGGAAAAAGTTATCGTTTATGTATATTT
8401163 GGACTATTTT
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
141 2 0.02
142 91 0.94
143 4 0.04
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (142 bp):
ATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTATCGAAAGTATT
GAACTTAGTTGACATCGATGATATGGAGGAAAAAGTTATCGTTTATGTATATTTAGATAAAAAAA
AATAAATTTGTT
Found at i:8402840 original size:134 final size:134
Alignment explanation
Indices: 8402600--8402842 Score: 310
Period size: 134 Copynumber: 1.8 Consensus size: 134
8402590 ATATTTTTTT
* * * * *
8402600 TATACAAACGCCACTAAAGCAACGGCGTTTTTCTTATAAAAATGTCACTAAATTAGTGGCGTCTC
1 TATACAAACGCCACTAAAGCAACGACATTTTTCTCATAAAAACGTCACTAAATTAGTGGCATCTC
* * ** * *
8402665 AAAGATATAAACGCCTTTAACATAGAGGCATTTTTAGATACAAACCTCATTAAAATAGCGGTATT
66 AAAGATACAAACACCACTAACATAGAGGCATTTTCAAATACAAACCTCATTAAAATAGCGGTATT
8402730 TTCA
131 TTCA
* * *
8402734 TATACAAACGCCA-TCAAAGTAATGACATTTTTCTCATAAAAACGTCACTAAATTAGTGGCATTT
1 TATACAAACGCCACT-AAAGCAACGACATTTTTCTCATAAAAACGTCACTAAATTAGTGGCATCT
* *
8402798 CAAATATACAAACACCACTAATATA-ACGGCATTTTCAAATACAAA
65 CAAAGATACAAACACCACTAACATAGA-GGCATTTTCAAATACAAA
8402843 TGCCGCTAAT
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
133 2 0.02
134 89 0.98
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (134 bp):
TATACAAACGCCACTAAAGCAACGACATTTTTCTCATAAAAACGTCACTAAATTAGTGGCATCTC
AAAGATACAAACACCACTAACATAGAGGCATTTTCAAATACAAACCTCATTAAAATAGCGGTATT
TTCA
Found at i:8406863 original size:39 final size:36
Alignment explanation
Indices: 8406820--8406906 Score: 84
Period size: 39 Copynumber: 2.3 Consensus size: 36
8406810 TGGCTTTGTT
* *
8406820 TTTAAAAAAATTATTAAATCTTCCAATAGTTTAGTAAGA
1 TTTAAAAAAATT-TAAAAT-TTCCAATAGTTTAAT-AGA
* *
8406859 TTTAACTCAAAATTTAAAATTTTCAATAGTTTAATAGA
1 TTTAA--AAAAATTTAAAATTTCCAATAGTTTAATAGA
*
8406897 ATTAAAAAAA
1 TTTAAAAAAA
8406907 AAATTTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
36 4 0.10
38 7 0.17
39 18 0.45
40 5 0.12
41 6 0.15
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.38
Consensus pattern (36 bp):
TTTAAAAAAATTTAAAATTTCCAATAGTTTAATAGA
Found at i:8407924 original size:26 final size:27
Alignment explanation
Indices: 8407890--8407942 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 27
8407880 TTCTCGTTTC
8407890 CTTTGTCTTTCGATTTTTTTTA-TTTTT
1 CTTTGTC-TTCGATTTTTTTTACTTTTT
*
8407917 CTTT-TCTTCGTTTTTTTTTACTTTTT
1 CTTTGTCTTCGATTTTTTTTACTTTTT
8407943 GCCTAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 7 0.29
27 4 0.17
ACGTcount: A:0.06, C:0.13, G:0.06, T:0.75
Consensus pattern (27 bp):
CTTTGTCTTCGATTTTTTTTACTTTTT
Found at i:8408532 original size:22 final size:22
Alignment explanation
Indices: 8408498--8408549 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
8408488 TCATGTCTAG
* * *
8408498 AGGAATTATAGATTATGCCCGA
1 AGGACTTAGAGATTACGCCCGA
*
8408520 AGGACTTAGAGATTACGCTCGA
1 AGGACTTAGAGATTACGCCCGA
*
8408542 AGGTCTTA
1 AGGACTTA
8408550 CAAATTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (22 bp):
AGGACTTAGAGATTACGCCCGA
Found at i:8410491 original size:15 final size:14
Alignment explanation
Indices: 8410467--8410500 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
8410457 TAATCAACTC
8410467 TTTTTCTCTTTTCTT
1 TTTTTCTCTTTT-TT
*
8410482 TTTTTTTCTTTTTT
1 TTTTTCTCTTTTTT
8410496 TTTTT
1 TTTTT
8410501 GTAACTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTCTCTTTTTT
Found at i:8412697 original size:22 final size:24
Alignment explanation
Indices: 8412667--8412734 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
8412657 AAAAACCCTT
*
8412667 TAACTAAAAATTAAAAATTATT-C
1 TAACAAAAAATTAAAAATTATTCC
* *
8412690 TAACAAAAAATCAAAAA-CATTCC
1 TAACAAAAAATTAAAAATTATTCC
*
8412713 TAA-AAAAAATTTAAAATCTATT
1 TAACAAAAAATTAAAAAT-TATT
8412735 ATATGGTCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
22 14 0.39
23 19 0.53
24 3 0.08
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (24 bp):
TAACAAAAAATTAAAAATTATTCC
Found at i:8414212 original size:12 final size:11
Alignment explanation
Indices: 8414195--8414243 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
8414185 GACAGAGAGG
8414195 ATAAATAAATAA
1 ATAAATAAA-AA
*
8414207 ATAAATAAAAT
1 ATAAATAAAAA
*
8414218 ATAGATAAAAA
1 ATAAATAAAAA
8414229 AT-AATAATAAA
1 ATAAATAA-AAA
8414240 ATAA
1 ATAA
8414244 TTTTTAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 4 0.13
11 17 0.55
12 10 0.32
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
ATAAATAAAAA
Found at i:8416113 original size:18 final size:18
Alignment explanation
Indices: 8416082--8416141 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
8416072 ATAAATAAAC
8416082 TAAAATTGAAAACCAAAAT
1 TAAAATT-AAAACCAAAAT
*
8416101 CAAAATTAAAACCAAAAT
1 TAAAATTAAAACCAAAAT
* *
8416119 TAAAAGTAAAAACAAAAT
1 TAAAATTAAAACCAAAAT
8416137 TAAAA
1 TAAAA
8416142 ATTTTGAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
18 31 0.84
19 6 0.16
ACGTcount: A:0.68, C:0.10, G:0.03, T:0.18
Consensus pattern (18 bp):
TAAAATTAAAACCAAAAT
Found at i:8417274 original size:61 final size:61
Alignment explanation
Indices: 8417208--8417323 Score: 189
Period size: 61 Copynumber: 1.9 Consensus size: 61
8417198 CGTTTAGCAT
* * *
8417208 AAAAATATCTTAAATAATCTTGTTTAATTTTTTTTA-AGTTTATTTAAAGTATTTTCTTGTA
1 AAAAATATCTTAAATAATCATGTTCAA-TTTTTTTAGAGATTATTTAAAGTATTTTCTTGTA
8417269 AAAAATATCTTAAATAATCATGTTCAATTTTTTTAGAGATTATTTAAAGTATTTT
1 AAAAATATCTTAAATAATCATGTTCAATTTTTTTAGAGATTATTTAAAGTATTTT
8417324 TGACCTAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
60 8 0.16
61 43 0.84
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (61 bp):
AAAAATATCTTAAATAATCATGTTCAATTTTTTTAGAGATTATTTAAAGTATTTTCTTGTA
Found at i:8420557 original size:29 final size:26
Alignment explanation
Indices: 8420514--8420568 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
8420504 TCTTTGGAAG
*
8420514 GCTTTGAAAAAAAAAAAAAATTAAAT
1 GCTTTGAAAAAAAAAAAAAACTAAAT
8420540 GCTTTGAAAAAATTAAAAGAAAACTAAAT
1 GCTTTGAAAAAA--AAAA-AAAACTAAAT
8420569 CAGTGCAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 12 0.48
28 4 0.16
29 9 0.36
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.24
Consensus pattern (26 bp):
GCTTTGAAAAAAAAAAAAAACTAAAT
Found at i:8421821 original size:3 final size:3
Alignment explanation
Indices: 8421808--8421924 Score: 82
Period size: 3 Copynumber: 40.3 Consensus size: 3
8421798 AATTAGTGTC
* * * * *
8421808 TAT TAT T-T TAT TAT TAT TAT CAT TAT TTT TGT TAT TAA TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * * * *
8421855 TATT TAT TAT TAT TGC TAA TAT TGT CAT TAT TAC TAG TAT TA- TAT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8421900 TAT TA- TAT TA- TAT TA- TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8421925 TTTTTTTTCT
Statistics
Matches: 87, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
2 10 0.11
3 74 0.85
4 3 0.03
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:8421923 original size:18 final size:18
Alignment explanation
Indices: 8421808--8421923 Score: 67
Period size: 19 Copynumber: 6.1 Consensus size: 18
8421798 AATTAGTGTC
*
8421808 TATTATTTTATTATTATTA
1 TATTATATTA-TATTATTA
* *
8421827 TCATTAT-TTTTGTTATTAA
1 T-ATTATATTATATTATT-A
8421846 TATTAATATTAT-TTATTA
1 TATT-ATATTATATTATTA
* *
8421864 TTATTGCTAATAT-TGTCATTA
1 -TATT-ATATTATAT-T-ATTA
*
8421885 TTACTAGTATTATATTATTA
1 -TATTA-TATTATATTATTA
8421905 TATTATATTATATTATTA
1 TATTATATTATATTATTA
8421923 T
1 T
8421924 TTTTTTTTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
18 24 0.31
19 26 0.33
20 13 0.17
21 14 0.18
22 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (18 bp):
TATTATATTATATTATTA
Found at i:8422388 original size:11 final size:11
Alignment explanation
Indices: 8422354--8422400 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
8422344 GTAAAGTTTG
*
8422354 AATTTCTAAAA
1 AATTTCTAGAA
**
8422365 AAAATCTA-AA
1 AATTTCTAGAA
*
8422375 AATTTCTAGGA
1 AATTTCTAGAA
8422386 AATTTCTAGAA
1 AATTTCTAGAA
8422397 AATT
1 AATT
8422401 GGGTTTGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (11 bp):
AATTTCTAGAA
Found at i:8422741 original size:21 final size:20
Alignment explanation
Indices: 8422717--8422784 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 20
8422707 ATCGCAGATT
8422717 TTTTTTCTCATTTT-ATTTTA
1 TTTTTT-TCATTTTGATTTTA
8422737 TTTTTTT-ATTTTGATTTTGA
1 TTTTTTTCATTTTGATTTT-A
*
8422757 TTTTTATCATTTTGATTTTA
1 TTTTTTTCATTTTGATTTTA
8422777 TGTTTTTT
1 T-TTTTTT
8422785 TATGTAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.12
19 6 0.14
20 15 0.36
21 16 0.38
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (20 bp):
TTTTTTTCATTTTGATTTTA
Found at i:8423062 original size:16 final size:17
Alignment explanation
Indices: 8423043--8423075 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
8423033 TTATAAATCA
8423043 ATTTTTTTAA-AAAAAT
1 ATTTTTTTAATAAAAAT
8423059 ATTTTTTTAATAAAAAT
1 ATTTTTTTAATAAAAAT
8423076 TTTATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTTTTTTAATAAAAAT
Found at i:8429935 original size:17 final size:18
Alignment explanation
Indices: 8429915--8429948 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8429905 GTTAATTTTT
8429915 TTTATTA-AAAGAAAATC
1 TTTATTATAAAGAAAATC
*
8429932 TTTATTATATAGAAAAT
1 TTTATTATAAAGAAAAT
8429949 ATTTTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (18 bp):
TTTATTATAAAGAAAATC
Found at i:8431467 original size:48 final size:47
Alignment explanation
Indices: 8431388--8431749 Score: 375
Period size: 48 Copynumber: 7.5 Consensus size: 47
8431378 GGCTCTTTTA
* * * *
8431388 AGCAGAGACTCAATAACTTT-AAAATTCATCTTGAAAAATCTTCTCT
1 AGCAGAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCTCT
* * * *
8431434 AGGTAGAGGCTTAACAACTTTAAAAATTTATCTTGGAAAAATCTCCTCTT
1 A-GCAGAGGCTCAACAACTTTAAAAATTCATCTT-GAAAAAGCTCCTC-T
* *
8431484 AGCAGAGGCTTAATAACTTTAAAAATTCATCTTGAAAAAGCTCCTCT
1 AGCAGAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCTCT
* * *
8431531 CAGTAGAGGCTCAACAATTTTAAAAATTCATCTTGAAAAAGCTCATCT
1 -AGCAGAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCTCT
* * * * * *
8431579 CGGTAGAGGCACAACAATTTTAAAAATTTATCTTGAAAAAGCTTCTCT
1 -AGCAGAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCTCT
* *
8431627 AAGCAGAGGCTCAATAACTTTAAAAATTCATCTTAGATAAAGCTCCTCT
1 -AGCAGAGGCTCAACAACTTTAAAAATTCATCTT-GAAAAAGCTCCTCT
* * * * *
8431676 AAACAGAGGCTCAACAACTTTAAAGATTTATTTTGAGAAAAAGCTCCTTT
1 -AGCAGAGGCTCAACAACTTTAAAAATTCATCTT--GAAAAAGCTCCTCT
*
8431726 AAGCAAAGGCTCAACAACTTTAAA
1 -AGCAGAGGCTCAACAACTTTAAA
8431750 GATTTCATTT
Statistics
Matches: 271, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
46 1 0.00
47 16 0.06
48 135 0.50
49 82 0.30
50 37 0.14
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCTCT
Found at i:8432070 original size:18 final size:20
Alignment explanation
Indices: 8432047--8432095 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
8432037 CTAATCGTCA
8432047 TCATTTTTTTTA-TTTTTT-
1 TCATTTTTTTTACTTTTTTC
*
8432065 TCATTTTTTTGACTTTTTTC
1 TCATTTTTTTTACTTTTTTC
8432085 TC-TTTTTTTTA
1 TCATTTTTTTTA
8432096 GGCAAAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 11 0.41
19 14 0.52
20 2 0.07
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (20 bp):
TCATTTTTTTTACTTTTTTC
Found at i:8432081 original size:10 final size:9
Alignment explanation
Indices: 8432047--8432093 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
8432037 CTAATCGTCA
8432047 TCATTTTTT
1 TCATTTTTT
*
8432056 TTATTTTTT
1 TCATTTTTT
8432065 TCATTTTTT
1 TCATTTTTT
*
8432074 TGACTTTTTT
1 TCA-TTTTTT
8432084 CTC-TTTTTT
1 -TCATTTTTT
8432093 T
1 T
8432094 TAGGCAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
8 1 0.03
9 24 0.75
10 6 0.19
11 1 0.03
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.79
Consensus pattern (9 bp):
TCATTTTTT
Found at i:8436522 original size:44 final size:44
Alignment explanation
Indices: 8436440--8436529 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
8436430 ATATCTTCTC
** * *
8436440 TTTTTAATTTCTAAAATTTTCACCATTTGGAGCTATTTAGAATT
1 TTTTTAATTTCTAAAATTTTCACCATTTAAAGCAATTTAAAATT
* * * *
8436484 TTTTTTATTTCTAAATTTTTCACTATTTAAATCAATTTAAAATT
1 TTTTTAATTTCTAAAATTTTCACCATTTAAAGCAATTTAAAATT
8436528 TT
1 TT
8436530 CCTTTTTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (44 bp):
TTTTTAATTTCTAAAATTTTCACCATTTAAAGCAATTTAAAATT
Found at i:8438994 original size:44 final size:44
Alignment explanation
Indices: 8438932--8439017 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
8438922 TTGCTTTAAC
* * *
8438932 AAAAATTCAAGTTGAAAACCTAACAAGGTGGCTTAAA-TAAAAA
1 AAAAATTCAAGTTAAAAACCCAAAAAGGTGGCTTAAACTAAAAA
8438975 AAAAAGTTCAAGTTAAAAACCCAAAAAGGTGGCTTAAACTAAA
1 AAAAA-TTCAAGTTAAAAACCCAAAAAGGTGGCTTAAACTAAA
8439018 TGAGGGTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 5 0.13
44 29 0.76
45 4 0.11
ACGTcount: A:0.53, C:0.13, G:0.14, T:0.20
Consensus pattern (44 bp):
AAAAATTCAAGTTAAAAACCCAAAAAGGTGGCTTAAACTAAAAA
Found at i:8439811 original size:29 final size:30
Alignment explanation
Indices: 8439778--8439840 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
8439768 CAGATTATCT
* * *
8439778 TTTTTATCTAGGTTTAATCCCAATCATTTA
1 TTTTGATCTAGGCTTAATCCAAATCATTTA
*
8439808 TTTTGATCTTGGCTTAATCCAAATCATTTA
1 TTTTGATCTAGGCTTAATCCAAATCATTTA
8439838 TTT
1 TTT
8439841 GACCATGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (30 bp):
TTTTGATCTAGGCTTAATCCAAATCATTTA
Found at i:8439853 original size:29 final size:30
Alignment explanation
Indices: 8439788--8439853 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
8439778 TTTTTATCTA
* * *
8439788 GGTTTAATCCCAATCATTTATTTTGATCTT
1 GGTTTAATCCAAATCATTTATTTTGACCAT
*
8439818 GGCTTAATCCAAATCATTTA-TTTGACCAT
1 GGTTTAATCCAAATCATTTATTTTGACCAT
8439847 GGTTTAA
1 GGTTTAA
8439854 CCATGGTCAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (30 bp):
GGTTTAATCCAAATCATTTATTTTGACCAT
Found at i:8440329 original size:3 final size:3
Alignment explanation
Indices: 8440323--8440410 Score: 71
Period size: 3 Copynumber: 31.3 Consensus size: 3
8440313 TGGTTATCGG
* * * *
8440323 TAT TAT TAT T-T T-T TAT TAT TAT TGT TAT TAT TGT TAT TAT T-C TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
8440368 TAT TA- TAT TA- TAT TA- TAT TAT TAT TAC TAC TAT TAC TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8440411 TCCTTTTCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
2 11 0.16
3 58 0.84
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:8440383 original size:10 final size:11
Alignment explanation
Indices: 8440323--8440393 Score: 53
Period size: 10 Copynumber: 6.7 Consensus size: 11
8440313 TGGTTATCGG
8440323 TATTATTAT-T
1 TATTATTATAT
*
8440333 TTTTA-T-TAT
1 TATTATTATAT
*
8440342 TATTGTTATTAT
1 TATTATTA-TAT
*
8440354 TGTTATTAT-T
1 TATTATTATAT
*
8440364 CTAGTATTATAT
1 -TATTATTATAT
8440376 TA-TATTATAT
1 TATTATTATAT
8440386 TATTATTA
1 TATTATTA
8440394 CTACTATTAC
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
8 1 0.02
9 5 0.11
10 16 0.34
11 15 0.32
12 10 0.21
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (11 bp):
TATTATTATAT
Found at i:8441252 original size:27 final size:27
Alignment explanation
Indices: 8441205--8441260 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8441195 GATTTTATTT
*
8441205 TTATTTTTTTATCATTGTTATTTTAAG
1 TTATTTTTTTATAATTGTTATTTTAAG
* *
8441232 TTATTTTTTGT-TAATTTTTATTTTTAG
1 TTATTTTTT-TATAATTGTTATTTTAAG
8441259 TT
1 TT
8441261 TTCCTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (27 bp):
TTATTTTTTTATAATTGTTATTTTAAG
Found at i:8445472 original size:33 final size:32
Alignment explanation
Indices: 8445406--8445473 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
8445396 ACAAGGCTTG
* ** *
8445406 TTTGCTTTATTTTTTATAATGGATAAAATTCA
1 TTTGCTTTATTATTTATAATAAATAAAACTCA
*
8445438 TTTGCTTTATTATTTATAATAAAATAAAGCTCA
1 TTTGCTTTATTATTTATAAT-AAATAAAACTCA
8445471 TTT
1 TTT
8445474 ATTTATACAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.51
Consensus pattern (32 bp):
TTTGCTTTATTATTTATAATAAATAAAACTCA
Found at i:8446418 original size:6 final size:7
Alignment explanation
Indices: 8446400--8446442 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
8446390 TCACGATTAG
8446400 GTTTTTT
1 GTTTTTT
8446407 GTTTTTT
1 GTTTTTT
*
8446414 GTTTTAT
1 GTTTTTT
*
8446421 ATTTTTAT
1 GTTTTT-T
*
8446429 ATTTTTT
1 GTTTTTT
8446436 GTTTTTT
1 GTTTTTT
8446443 ACATTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 24 0.77
8 7 0.23
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (7 bp):
GTTTTTT
Found at i:8452760 original size:13 final size:12
Alignment explanation
Indices: 8452640--8452763 Score: 54
Period size: 11 Copynumber: 10.6 Consensus size: 12
8452630 TATGTTTATT
8452640 TAATTATCTAATA
1 TAATTAT-TAATA
8452653 -ATATT-TTAAT-
1 TA-ATTATTAATA
8452663 TAATTAATTAAT-
1 TAATT-ATTAATA
*
8452675 TAATTATTCA-A
1 TAATTATTAATA
* * *
8452686 TCATT-GTAATT
1 TAATTATTAATA
*
8452697 TACTTA-TAATA
1 TAATTATTAATA
8452708 TAA-TA-T-ATA
1 TAATTATTAATA
8452717 TTAATTATTCAAT-
1 -TAATTATT-AATA
8452730 TAATTATATAAATA
1 TAATTAT-T-AATA
8452744 TAATTATTAATTA
1 TAATTATTAA-TA
8452757 TAATTAT
1 TAATTAT
8452764 AACTTTTAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 30
0.68 0.08 0.24
Matches are distributed among these distances:
9 3 0.03
10 11 0.13
11 24 0.28
12 22 0.26
13 17 0.20
14 9 0.10
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (12 bp):
TAATTATTAATA
Found at i:8453138 original size:19 final size:20
Alignment explanation
Indices: 8453116--8453154 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
8453106 TATTTTTATA
*
8453116 TATTTAATAA-ATTAATTTT
1 TATTTAATAATATAAATTTT
8453135 TATTTAATAATATAAATTTT
1 TATTTAATAATATAAATTTT
8453155 GTTTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTTAATAATATAAATTTT
Found at i:8453620 original size:3 final size:3
Alignment explanation
Indices: 8453612--8453638 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8453602 ATAAATTTGA
8453612 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
8453639 TCCACAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8454505 original size:26 final size:26
Alignment explanation
Indices: 8454442--8454505 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 26
8454432 TTATTTTATT
* *
8454442 TTTTTCACTTTTTTTGTTTTTTAAAG
1 TTTTTAACTTTTTTTGTTTTTTAAAA
* * *
8454468 CTTTTGA-TTTTTTTTTATTTTTAAAA
1 TTTTTAACTTTTTTTGT-TTTTTAAAA
8454494 TTTTTAACTTTT
1 TTTTTAACTTTT
8454506 ATATTTTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 8 0.27
26 18 0.60
27 4 0.13
ACGTcount: A:0.19, C:0.06, G:0.05, T:0.70
Consensus pattern (26 bp):
TTTTTAACTTTTTTTGTTTTTTAAAA
Found at i:8456383 original size:24 final size:24
Alignment explanation
Indices: 8456356--8456402 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8456346 CTTCTTTAAG
*
8456356 CAAATTCAGATTCTTGAATCTAAA
1 CAAATTCAGATTCTCGAATCTAAA
* *
8456380 CAAATTTAGTTTCTCGAATCTAA
1 CAAATTCAGATTCTCGAATCTAA
8456403 GCCCAAGTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (24 bp):
CAAATTCAGATTCTCGAATCTAAA
Found at i:8459792 original size:25 final size:25
Alignment explanation
Indices: 8459764--8459826 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 25
8459754 AATATAAATT
*
8459764 TTAAAATATTAAGAA-TTATTTATTA
1 TTAAAATATT-AGAAGTTATTTATCA
8459789 TTAAAGTATATT-GAAGTTATTTATCA
1 TTAAA--ATATTAGAAGTTATTTATCA
8459815 TTAAAATTATTA
1 TTAAAA-TATTA
8459827 TTATTGAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
24 1 0.03
25 12 0.38
26 14 0.44
27 5 0.16
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (25 bp):
TTAAAATATTAGAAGTTATTTATCA
Found at i:8460008 original size:21 final size:21
Alignment explanation
Indices: 8459981--8460030 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8459971 ATTTTTATTA
8459981 ATATTAAAATAGTAATATTT-
1 ATATTAAAATAGTAATATTTC
* *
8460001 ATTATTAAAATATTTATATTTC
1 A-TATTAAAATAGTAATATTTC
8460023 ATATTAAA
1 ATATTAAA
8460031 TGTATCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 1 0.04
21 24 0.92
22 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATTAAAATAGTAATATTTC
Found at i:8461160 original size:22 final size:23
Alignment explanation
Indices: 8461124--8461176 Score: 83
Period size: 22 Copynumber: 2.3 Consensus size: 23
8461114 AAAATTTTTT
8461124 ATTAATAAAATTTAAATTGAT-AA
1 ATTAATAAAATTTAAA-TGATAAA
8461147 ATTAATAAAA-TTAAATGATAAA
1 ATTAATAAAATTTAAATGATAAA
8461169 ATTAATAA
1 ATTAATAA
8461177 TATATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.14
22 15 0.52
23 10 0.34
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
ATTAATAAAATTTAAATGATAAA
Found at i:8461280 original size:13 final size:12
Alignment explanation
Indices: 8461258--8461313 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 12
8461248 ATTAAACTTC
8461258 TTATTAAAAATAT
1 TTATT-AAAATAT
8461271 TTATCTAAAATAT
1 TTAT-TAAAATAT
*
8461284 ATA-TAAAAT-T
1 TTATTAAAATAT
8461294 TTATT-AAA-AT
1 TTATTAAAATAT
8461304 TTATTAAAAT
1 TTATTAAAAT
8461314 TTACATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
10 12 0.33
11 10 0.28
13 13 0.36
14 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (12 bp):
TTATTAAAATAT
Found at i:8461301 original size:22 final size:22
Alignment explanation
Indices: 8461259--8461315 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
8461249 TTAAACTTCT
8461259 TATTAAAAATATTTATCTAAAATA
1 TATT-AAAAT-TTTATCTAAAATA
*
8461283 TATATAAAATTTTAT-TAAAATT
1 TAT-TAAAATTTTATCTAAAATA
8461305 TATTAAAATTT
1 TATTAAAATTT
8461316 ACATATTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 8 0.26
22 9 0.29
23 5 0.16
24 8 0.26
25 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTAAAATTTTATCTAAAATA
Found at i:8461308 original size:10 final size:11
Alignment explanation
Indices: 8461269--8461316 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
8461259 TATTAAAAAT
*
8461269 ATTTATCTAAA
1 ATTTATATAAA
*
8461280 ATATATATAAA
1 ATTTATATAAA
8461291 ATTT-TATTAAA
1 ATTTATA-TAAA
8461302 ATTTAT-TAAA
1 ATTTATATAAA
8461312 ATTTA
1 ATTTA
8461317 CATATTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 11 0.34
11 20 0.62
12 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTTATATAAA
Found at i:8462273 original size:22 final size:22
Alignment explanation
Indices: 8462216--8462277 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
8462206 ATAATTAAAT
*
8462216 AATTTTAAAATTATGAT-AAAA
1 AATTATAAAATTATGATAAAAA
**
8462237 AATTAT-ATGTGTATGATAAAAA
1 AATTATAAAAT-TATGATAAAAA
8462259 AATTATAAAATTATGATAA
1 AATTATAAAATTATGATAA
8462278 TTTTATTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
20 2 0.06
21 11 0.33
22 18 0.55
23 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (22 bp):
AATTATAAAATTATGATAAAAA
Found at i:8463455 original size:14 final size:14
Alignment explanation
Indices: 8463436--8463482 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
8463426 CTCTTTCTTA
8463436 TATATGTGTGTGTG
1 TATATGTGTGTGTG
*
8463450 TATATGTGTGTATG
1 TATATGTGTGTGTG
* *
8463464 TATGTGTGTGAGTG
1 TATATGTGTGTGTG
8463478 TATAT
1 TATAT
8463483 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.49
Consensus pattern (14 bp):
TATATGTGTGTGTG
Found at i:8463483 original size:2 final size:2
Alignment explanation
Indices: 8463478--8463509 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8463468 TGTGTGAGTG
8463478 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8463510 ATGTTATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8464982 original size:26 final size:26
Alignment explanation
Indices: 8464953--8465005 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8464943 CACCTAAAGT
8464953 AAAAACTATACATTTTTATTGTTAAC
1 AAAAACTATACATTTTTATTGTTAAC
8464979 AAAAACTATACATTTTTATTGTTAAC
1 AAAAACTATACATTTTTATTGTTAAC
8465005 A
1 A
8465006 GTGATTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.42
Consensus pattern (26 bp):
AAAAACTATACATTTTTATTGTTAAC
Found at i:8466388 original size:17 final size:16
Alignment explanation
Indices: 8466368--8466406 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
8466358 TAAATTTGAT
8466368 TATGAAATAAAATTAAA
1 TATGAAA-AAAATTAAA
*
8466385 TATGAAACAAATTAAA
1 TATGAAAAAAATTAAA
8466401 TATGAA
1 TATGAA
8466407 TACATAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.28
Consensus pattern (16 bp):
TATGAAAAAAATTAAA
Found at i:8466721 original size:47 final size:48
Alignment explanation
Indices: 8466626--8466723 Score: 110
Period size: 48 Copynumber: 2.1 Consensus size: 48
8466616 TCTTCGATAG
* * * * *
8466626 TTTGGTAATATTTTATTTCAAAAAAATTATGATAAAATCTATTTATAA
1 TTTGATAAAATTTTATTTCAAAAAAATTATAATAAAATCTACTAATAA
**
8466674 TTTGATAAAATTTTATTTTTAAAAAA-TATAATAAAATCCT-CTAATAA
1 TTTGATAAAATTTTATTTCAAAAAAATTATAATAAAAT-CTACTAATAA
8466721 TTT
1 TTT
8466724 AGTAATATCT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
47 18 0.43
48 24 0.57
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (48 bp):
TTTGATAAAATTTTATTTCAAAAAAATTATAATAAAATCTACTAATAA
Found at i:8469159 original size:19 final size:19
Alignment explanation
Indices: 8469135--8469190 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
8469125 AATGATCATG
*
8469135 GGTTTTTGGGATTTTTTAA
1 GGTTTTTGGGATTTTTAAA
* *
8469154 GGTTTTTAGGGGTTTTAAAA
1 GGTTTTT-GGGATTTTTAAA
**
8469174 TATTTTTGGGATTTTTA
1 GGTTTTTGGGATTTTTA
8469191 GGGTTACGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (19 bp):
GGTTTTTGGGATTTTTAAA
Found at i:8470717 original size:53 final size:53
Alignment explanation
Indices: 8470645--8470800 Score: 159
Period size: 53 Copynumber: 2.9 Consensus size: 53
8470635 AGAGGTGCAT
** * *
8470645 AAGGACACGTTGGCCTGTTGGCGCATAGTCTTAACACAATAAGAAAGGTATGC
1 AAGGACACGTTGGTATGTTGGCACATAGTCTTAACATAATAAGAAAGGTATGC
* * ** * *
8470698 AAGGACACGTTGGTATGTTGACACGTAACCTTAACATAATAAGAAAGGTGTGT
1 AAGGACACGTTGGTATGTTGGCACATAGTCTTAACATAATAAGAAAGGTATGC
* * * * * *
8470751 AGGGACACGTTGGGTATGCTGGCATAGAGTCTTAACGTAATAAGAGAGGT
1 AAGGACACGTT-GGTATGTTGGCACATAGTCTTAACATAATAAGAAAGGT
8470801 GTATAGAGGC
Statistics
Matches: 82, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
53 53 0.65
54 29 0.35
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (53 bp):
AAGGACACGTTGGTATGTTGGCACATAGTCTTAACATAATAAGAAAGGTATGC
Found at i:8470792 original size:54 final size:54
Alignment explanation
Indices: 8470671--8470819 Score: 144
Period size: 54 Copynumber: 2.8 Consensus size: 54
8470661 GTTGGCGCAT
* * * * *
8470671 AGTCTTAACACAATAAGAAAGGTATGCAAGGACACGTT-GGTATGTTGACACGTA
1 AGTCTTAACATAATAAGAAAGGTGTGTAGGGACACGTTGGGTATGCTGACAC-TA
* *
8470725 A-CCTTAACATAATAAGAAAGGTGTGTAGGGACACGTTGGGTATGCTGGCA-TA
1 AGTCTTAACATAATAAGAAAGGTGTGTAGGGACACGTTGGGTATGCTGACACTA
* * * *
8470777 GAGTCTTAACGTAATAAGAGAGGTGTATAGAGG-CATGTTGGGT
1 -AGTCTTAACATAATAAGAAAGGTGTGTAG-GGACACGTTGGGT
8470820 GTGTTAGTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.03
53 32 0.41
54 43 0.54
55 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (54 bp):
AGTCTTAACATAATAAGAAAGGTGTGTAGGGACACGTTGGGTATGCTGACACTA
Found at i:8470833 original size:54 final size:54
Alignment explanation
Indices: 8470775--8470878 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
8470765 TATGCTGGCA
* * * *
8470775 TAGAGTCTT-AACGTAATAAGAGAGGTGTAT-AGAGGCATGTTGGGTGTGTTAGTG
1 TAGAG-CTTCAACGCAATAAAAGAGGTGCATAAGA-GCATATTGGGTGTGTTAGTG
* *
8470829 TAGAGCTTCAATGCAATAAAAGATGTGCATAAGAGCATATTGGGTGTGTT
1 TAGAGCTTCAACGCAATAAAAGAGGTGCATAAGAGCATATTGGGTGTGTT
8470879 GGCACGAAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
53 3 0.07
54 36 0.86
55 3 0.07
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (54 bp):
TAGAGCTTCAACGCAATAAAAGAGGTGCATAAGAGCATATTGGGTGTGTTAGTG
Found at i:8475228 original size:15 final size:15
Alignment explanation
Indices: 8475204--8475243 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
8475194 CATAAATGGC
8475204 TTGCCAAAAATAACA
1 TTGCCAAAAATAACA
*
8475219 TTGTCAAAAATAACA
1 TTGCCAAAAATAACA
8475234 TTGCCAAAAA
1 TTGCCAAAAA
8475244 CCACTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (15 bp):
TTGCCAAAAATAACA
Found at i:8478990 original size:17 final size:16
Alignment explanation
Indices: 8478968--8479013 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
8478958 ATAATTTTTT
8478968 AATTTTTATTTAAATA
1 AATTTTTATTTAAATA
8478984 AATTTTTATTTAAAATA
1 AATTTTTATTT-AAATA
8479001 AATTATTTATTTA
1 AATT-TTTATTTA
8479014 TGTTAAGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.39
17 10 0.36
18 7 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
AATTTTTATTTAAATA
Found at i:8479058 original size:30 final size:29
Alignment explanation
Indices: 8479015--8479122 Score: 114
Period size: 30 Copynumber: 3.7 Consensus size: 29
8479005 ATTTATTTAT
*
8479015 GTTAAGAGCTTATTTATGAATAAATTAAAG
1 GTTAAGAACTTATTTA-GAATAAATTAAAG
*
8479045 GTTAA-ATATTTATTTAGATATAAATTAAAG
1 GTTAAGA-ACTTATTTAGA-ATAAATTAAAG
*
8479075 ATTAAGAACTTATTTA-AATATAATTAAAG
1 GTTAAGAACTTATTTAGAATA-AATTAAAG
* *
8479104 GTCAATAACTTATTT-GAAT
1 GTTAAGAACTTATTTAGAAT
8479123 GCAATAAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
28 3 0.05
29 27 0.41
30 35 0.53
31 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (29 bp):
GTTAAGAACTTATTTAGAATAAATTAAAG
Found at i:8479196 original size:23 final size:23
Alignment explanation
Indices: 8479151--8479196 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8479141 CATATTATTT
** *
8479151 AAATAAAGTGATATTGTTTAAAA
1 AAATAAAGTGATATAATTCAAAA
8479174 AAATAAAGTGATATAATTCAAAA
1 AAATAAAGTGATATAATTCAAAA
8479197 GCTGTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (23 bp):
AAATAAAGTGATATAATTCAAAA
Found at i:8481587 original size:19 final size:18
Alignment explanation
Indices: 8481546--8481583 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8481536 TTTTTATATT
*
8481546 AATAAATAATATGTTTGA
1 AATAAAAAATATGTTTGA
8481564 AATAAAAAATTAT-TTTGA
1 AATAAAAAA-TATGTTTGA
8481582 AA
1 AA
8481584 ATAATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (18 bp):
AATAAAAAATATGTTTGA
Found at i:8481739 original size:106 final size:106
Alignment explanation
Indices: 8481559--8481760 Score: 291
Period size: 106 Copynumber: 1.9 Consensus size: 106
8481549 AAATAATATG
*
8481559 TTTGAAATAAAAAATTATTTTGAAAATAATTTTTAACTTGAAATGATTTATTTAATACACATCCT
1 TTTGAAATAAAAAATTATTTTGAAAATAATTTTTAACTTGAAAAGATTTATTTAATACACATCCT
*
8481624 TAAGTTTTATTGA-TTTTAGTACTAAATAAATACTAGTAGTA
66 TAAGATTTATT-ATTTTTAGTACTAAATAAATACTAGTAGTA
* * **
8481665 TTTGAAATGAAAAA-TATTTTGAAAAATAATTTTTAACTTGAAAAGATTTATTTAATACATATTT
1 TTTGAAATAAAAAATTATTTTG-AAAATAATTTTTAACTTGAAAAGATTTATTTAATACACATCC
* * *
8481729 TTATGATTTATTATTTTTGGTATTAAATAAAT
65 TTAAGATTTATTATTTTTAGTACTAAATAAAT
8481761 TATATATTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
105 8 0.09
106 77 0.91
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (106 bp):
TTTGAAATAAAAAATTATTTTGAAAATAATTTTTAACTTGAAAAGATTTATTTAATACACATCCT
TAAGATTTATTATTTTTAGTACTAAATAAATACTAGTAGTA
Found at i:8493042 original size:26 final size:26
Alignment explanation
Indices: 8493006--8493109 Score: 145
Period size: 26 Copynumber: 4.0 Consensus size: 26
8492996 TTAAAATAAA
*
8493006 ACTTAGCATGATTTAAGCAAACTTTT
1 ACTTAGCATGATTTGAGCAAACTTTT
* * *
8493032 ACTTCGCATGATTTTAGCAAACTCTT
1 ACTTAGCATGATTTGAGCAAACTTTT
*
8493058 ACTTAGCGTGATTTGAGCAAACTTTT
1 ACTTAGCATGATTTGAGCAAACTTTT
* *
8493084 ACTTAGCATGATGTGAGCAAGCTTTT
1 ACTTAGCATGATTTGAGCAAACTTTT
8493110 GCATCTATAG
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (26 bp):
ACTTAGCATGATTTGAGCAAACTTTT
Found at i:8502772 original size:19 final size:20
Alignment explanation
Indices: 8502748--8502792 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
8502738 TAGTACTTTT
*
8502748 AATTTTTTTAATATT-TAGA
1 AATTTTTTAAATATTCTAGA
*
8502767 AATTTTTTAAATTTTCTAGA
1 AATTTTTTAAATATTCTAGA
8502787 AATTTT
1 AATTTT
8502793 CAATATTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
AATTTTTTAAATATTCTAGA
Found at i:8502800 original size:20 final size:20
Alignment explanation
Indices: 8502763--8502801 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8502753 TTTTAATATT
*
8502763 TAGAAATTTTTTAAATTTTC
1 TAGAAATTTTTCAAATTTTC
8502783 TAGAAA-TTTTCAATATTTT
1 TAGAAATTTTTCAA-ATTTT
8502802 GAAATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TAGAAATTTTTCAAATTTTC
Found at i:8503402 original size:20 final size:22
Alignment explanation
Indices: 8503364--8503411 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
8503354 CAAAACTTTC
8503364 AAAAAATAATATTAAAATATTG
1 AAAAAATAATATTAAAATATTG
* *
8503386 AAAAAATAA-ATT-TAATATTT
1 AAAAAATAATATTAAAATATTG
8503406 AAAAAA
1 AAAAAA
8503412 ACCCAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.50
21 3 0.12
22 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAAATAATATTAAAATATTG
Found at i:8503410 original size:21 final size:22
Alignment explanation
Indices: 8503364--8503412 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
8503354 CAAAACTTTC
*
8503364 AAAAAATAATATTAAAATATTG
1 AAAAAATAATATTAAAATATTA
*
8503386 AAAAAATAA-ATT-TAATATTTA
1 AAAAAATAATATTAAAATA-TTA
8503407 AAAAAA
1 AAAAAA
8503413 CCCAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.17
21 11 0.46
22 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAAATAATATTAAAATATTA
Found at i:8504247 original size:3 final size:3
Alignment explanation
Indices: 8504239--8504274 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8504229 CTTAAAAATA
8504239 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8504275 GTGATAGTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.