Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 49 of 106
Found at i:8509707 original size:3 final size:3
Alignment explanation
Indices: 8509699--8509724 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8509689 TGAAATCATA
8509699 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
8509725 AAAACACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8512474 original size:20 final size:20
Alignment explanation
Indices: 8512448--8512492 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8512438 CTTTTGCTAG
* *
8512448 GGGATCGATTTGGTAAGGAA
1 GGGATCGATTCGATAAGGAA
*
8512468 TGGATCGATTCGATAAGGAA
1 GGGATCGATTCGATAAGGAA
8512488 GGGAT
1 GGGAT
8512493 TGATCCCTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.07, G:0.38, T:0.24
Consensus pattern (20 bp):
GGGATCGATTCGATAAGGAA
Found at i:8513005 original size:8 final size:8
Alignment explanation
Indices: 8512992--8513022 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
8512982 TCAATGTCAC
8512992 ATGCCATA
1 ATGCCATA
8513000 ATGCCATA
1 ATGCCATA
8513008 ATGCCATA
1 ATGCCATA
8513016 A-GCCATA
1 ATGCCATA
8513023 TGAGAATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (8 bp):
ATGCCATA
Found at i:8515543 original size:20 final size:20
Alignment explanation
Indices: 8515518--8515565 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
8515508 CCAGAAAAAA
8515518 GATCGATCCCTCAAATAGGG
1 GATCGATCCCTCAAATAGGG
8515538 GATCGATCCCTCAAATAGGG
1 GATCGATCCCTCAAATAGGG
8515558 GATCGATC
1 GATCGATC
8515566 GCCTAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (20 bp):
GATCGATCCCTCAAATAGGG
Found at i:8517876 original size:29 final size:28
Alignment explanation
Indices: 8517833--8517897 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
8517823 TTTTATCTTG
8517833 TATATTAAGTAATTTTTTTT-ATAAATATA
1 TATATTAAGTAATTTTTTTTAATAAA-A-A
8517862 TATATTAATGT-ATTTTTTTTAATAAAAA
1 TATATTAA-GTAATTTTTTTTAATAAAAA
8517890 TATATTAA
1 TATATTAA
8517898 CTTTAATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
28 9 0.26
29 18 0.53
30 7 0.21
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (28 bp):
TATATTAAGTAATTTTTTTTAATAAAAA
Found at i:8517881 original size:30 final size:27
Alignment explanation
Indices: 8517833--8517897 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 27
8517823 TTTTATCTTG
*
8517833 TATATTAAGTAATTTTTTTTATAAATATA
1 TATATTAAGTAATTTTTTTAATAAA-A-A
*
8517862 TATATTAATGTATTTTTTTTAATAAAAA
1 TATATTAA-GTAATTTTTTTAATAAAAA
8517890 TATATTAA
1 TATATTAA
8517898 CTTTAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 9 0.27
29 9 0.27
30 15 0.45
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (27 bp):
TATATTAAGTAATTTTTTTAATAAAAA
Found at i:8519884 original size:34 final size:34
Alignment explanation
Indices: 8519841--8519911 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
8519831 CCCAATCTGT
*
8519841 TGCTCTCATTTGTCATCCTTAAGCCATTGTGATA
1 TGCTCTCATTTGTCATCCTTAAGCCATTGTAATA
8519875 TGCTCTCATTTGTCATCCTTAAGCCATTGTAATA
1 TGCTCTCATTTGTCATCCTTAAGCCATTGTAATA
8519909 TGC
1 TGC
8519912 GACCTTCTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (34 bp):
TGCTCTCATTTGTCATCCTTAAGCCATTGTAATA
Found at i:8522488 original size:2 final size:2
Alignment explanation
Indices: 8522477--8522514 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
8522467 CTTTTGATTA
* *
8522477 AT AT -T AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8522515 AATTATGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8523523 original size:10 final size:10
Alignment explanation
Indices: 8523508--8523534 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8523498 AATTATTTGA
8523508 TAAATAAAAT
1 TAAATAAAAT
8523518 TAAATAAAAT
1 TAAATAAAAT
8523528 TAAATAA
1 TAAATAA
8523535 TTTAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAATAAAAT
Found at i:8525737 original size:16 final size:17
Alignment explanation
Indices: 8525699--8525740 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8525689 AATTTGATAA
8525699 AAAAAGAAAAAATTCGT
1 AAAAAGAAAAAATTCGT
** *
8525716 TCAAAGAAAAATTTC-T
1 AAAAAGAAAAAATTCGT
8525732 AAAAAGAAA
1 AAAAAGAAA
8525741 TCCAAATGTA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.64, C:0.07, G:0.10, T:0.19
Consensus pattern (17 bp):
AAAAAGAAAAAATTCGT
Found at i:8530249 original size:21 final size:21
Alignment explanation
Indices: 8530225--8530270 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8530215 GCTTCTTAAA
8530225 CTCTTTTCCTCCCTTCTCATC
1 CTCTTTTCCTCCCTTCTCATC
* *
8530246 CTCTTTTCTTCCTTTCTCATC
1 CTCTTTTCCTCCCTTCTCATC
8530267 CTCT
1 CTCT
8530271 CATCCTCTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.04, C:0.43, G:0.00, T:0.52
Consensus pattern (21 bp):
CTCTTTTCCTCCCTTCTCATC
Found at i:8530684 original size:20 final size:21
Alignment explanation
Indices: 8530655--8530694 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8530645 ATAATCTATA
* *
8530655 TATTTCATAA-ATTAATTTTT
1 TATTTAATAATATAAATTTTT
8530675 TATTTAATAATATAAATTTT
1 TATTTAATAATATAAATTTT
8530695 ATTTTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTTAATAATATAAATTTTT
Found at i:8530705 original size:26 final size:25
Alignment explanation
Indices: 8530661--8530731 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
8530651 TATATATTTC
* *
8530661 ATAAATTAATTTTTTATTTAATA-A
1 ATAAATTTATTTTATATTTAATAGA
*
8530685 TATAAATTTTATTTTATATTTATTAGA
1 -ATAAA-TTTATTTTATATTTAATAGA
*
8530712 ATTAATTTA-TTTATATTTAA
1 ATAAATTTATTTTATATTTAA
8530732 AAAATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 10 0.26
25 9 0.23
26 19 0.49
27 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (25 bp):
ATAAATTTATTTTATATTTAATAGA
Found at i:8530764 original size:26 final size:25
Alignment explanation
Indices: 8530728--8530789 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
8530718 TTATTTATAT
**
8530728 TTAA-AAAATATATATTTATAAAAAA
1 TTAACAAAATATATA-AGATAAAAAA
8530753 TT-ACATAAATATATAAGATAAAAAA
1 TTAACA-AAATATATAAGATAAAAAA
8530778 TTAACAAAATAT
1 TTAACAAAATAT
8530790 TTTTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 1 0.03
25 19 0.59
26 12 0.38
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (25 bp):
TTAACAAAATATATAAGATAAAAAA
Found at i:8531339 original size:17 final size:17
Alignment explanation
Indices: 8531319--8531353 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8531309 CTTAAATAAA
*
8531319 TTTTTTTATTATTAGAT
1 TTTTTTTATAATTAGAT
8531336 TTTTTTTATAATTAGAT
1 TTTTTTTATAATTAGAT
8531353 T
1 T
8531354 CATATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
TTTTTTTATAATTAGAT
Found at i:8532445 original size:179 final size:178
Alignment explanation
Indices: 8532112--8532471 Score: 483
Period size: 179 Copynumber: 2.0 Consensus size: 178
8532102 TTAACACCGA
* * * *
8532112 TGGTTTTTATCGACAAAAAATTTCCATCGATAATTATAGGTAGATTATCAATAGCTTACCAACAA
1 TGGTTTTTATCGACAAAAAATTTCCATCAATAATTATAGGCAAATTATCAAGAGCTTACCAACAA
*
8532177 ATCATAACTATAAAATTACCATAAAAACATTGACAAAATTCTAACAGAATTTACCAATGAAAAAA
66 ATCATAACTACAAAATTACCATAAAAACATTGACAAAATTCTAACAGAATTTACCAATGAAAAAA
*
8532242 AATTCACCGATATTTTATAAGTAAATATGAGTAGGGAATTTGAGAAAT
131 AATTCACCGATATTTTATAAGTAAATATAAGTAGGGAATTTGAGAAAT
** * * *
8532290 TGGTTTTTATCGA-TGAAATTTTTCATCAATAATTATAGGCAAATTATCAACGA-CTTACCAATA
1 TGGTTTTTATCGACAAAAAATTTCCATCAATAATTATAGGCAAATTATCAA-GAGCTTACCAACA
* * * * * *
8532353 GATCATAACTACAAAATTACCATGGAAAAACATTGACGAAATTCTGATAGAATTTACTGACT-AA
65 AATCATAACTACAAAATTACCAT--AAAAACATTGACAAAATTCTAACAGAATTTAC-CAATGAA
* * *
8532417 AAAAAATTCATCGGTATTTTGTAAGTAAATATAAGTAGGGAATTTGAGAAAT
127 AAAAAATTCACCGATATTTTATAAGTAAATATAAGTAGGGAATTTGAGAAAT
8532469 TGG
1 TGG
8532472 CACGAAAAAT
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
177 60 0.38
178 14 0.09
179 82 0.52
180 2 0.01
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.31
Consensus pattern (178 bp):
TGGTTTTTATCGACAAAAAATTTCCATCAATAATTATAGGCAAATTATCAAGAGCTTACCAACAA
ATCATAACTACAAAATTACCATAAAAACATTGACAAAATTCTAACAGAATTTACCAATGAAAAAA
AATTCACCGATATTTTATAAGTAAATATAAGTAGGGAATTTGAGAAAT
Found at i:8536031 original size:6 final size:6
Alignment explanation
Indices: 8535990--8536049 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
8535980 ATTTGAAAAG
* * * * *
8535990 AAGAAA AAGAAC AAGAAC AAGAAC AAGAAC AAGAAA AAGAAAA AAAAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAG-AAA AAGAAA
*
8536039 AAGAAG AAGAA
1 AAGAAA AAGAA
8536050 GATGATAATG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
6 43 0.90
7 5 0.10
ACGTcount: A:0.77, C:0.07, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:8536050 original size:6 final size:6
Alignment explanation
Indices: 8535990--8536030 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
8535980 ATTTGAAAAG
* *
8535990 AAGAAA AAGAAC AAGAAC AAGAAC AAGAAC AAGAAA AAGAA
1 AAGAAC AAGAAC AAGAAC AAGAAC AAGAAC AAGAAC AAGAA
8536031 AAAAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.73, C:0.10, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAC
Found at i:8536063 original size:3 final size:3
Alignment explanation
Indices: 8536050--8536091 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
8536040 AGAAGAAGAA
* *
8536050 GAT GAT AAT GAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
8536092 AAAACACATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:8537930 original size:141 final size:142
Alignment explanation
Indices: 8537730--8537985 Score: 320
Period size: 141 Copynumber: 1.8 Consensus size: 142
8537720 AATTTGTTCA
*
8537730 AAATTCTTTATTAAACTAGATAATGTATTGTGTGTATTACAATGCAATAACTCTGTGAAAAGTGA
1 AAATTCTTTATTAAACTAGATAATGTATTGTGTGTATTACAATGCAATAACTCTATGAAAAGTGA
* * * * * *
8537795 AAATTGTTG-AGTATTTTGCTTTATGTTTC-TTGATGTGTATTGTGCTTATAGTAATTTAAAGCC
66 AAACTATCGCA-TATTTTACTTTATGGTTCTTTCATGTGTATTGTGCTTATAGTAATTTAAAGCC
8537858 AAAAATTTATAGG
130 AAAAATTTATAGG
* * ** ** * * *
8537871 AAATTCTTTATTGAATTAGATAATGTATTGTGTGTATT-GGATGTTATGACTTTCATGAAAGGTG
1 AAATTCTTTATTAAACTAGATAATGTATTGTGTGTATTACAATGCAATAACTCT-ATGAAAAGTG
*
8537935 AAAACTATCGCATATTTTACTTTATGGTTCTTTCTTGTGTATTGTGCTTAT
65 AAAACTATCGCATATTTTACTTTATGGTTCTTTCATGTGTATTGTGCTTAT
8537986 TGATGAACTA
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
140 9 0.09
141 67 0.71
142 19 0.20
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (142 bp):
AAATTCTTTATTAAACTAGATAATGTATTGTGTGTATTACAATGCAATAACTCTATGAAAAGTGA
AAACTATCGCATATTTTACTTTATGGTTCTTTCATGTGTATTGTGCTTATAGTAATTTAAAGCCA
AAAATTTATAGG
Found at i:8539383 original size:22 final size:22
Alignment explanation
Indices: 8539330--8539371 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
8539320 GTAATCTGTA
8539330 ATTAAATTATCAATAATTTACC
1 ATTAAATTATCAATAATTTACC
8539352 ATTAAATTATCAATAATTTA
1 ATTAAATTATCAATAATTTA
8539372 TTATTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAAATTATCAATAATTTACC
Found at i:8539513 original size:21 final size:22
Alignment explanation
Indices: 8539489--8539539 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
8539479 CACTACCAAG
* *
8539489 TTATCATTTATTTA-TATTAAA
1 TTATCATTGATTTACAATTAAA
*
8539510 TTATTCA-TGATTTACAATTAAG
1 TTA-TCATTGATTTACAATTAAA
8539532 TTATCATT
1 TTATCATT
8539540 AATTAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.53
Consensus pattern (22 bp):
TTATCATTGATTTACAATTAAA
Found at i:8542510 original size:22 final size:22
Alignment explanation
Indices: 8542393--8543120 Score: 209
Period size: 22 Copynumber: 33.8 Consensus size: 22
8542383 AATAATCAGT
*
8542393 ATAATTTAATAG-CAATT-ATCG
1 ATAATTTAATAGTAAATTAAT-G
* * * * *
8542414 GTAACTTAATAGTTAATCAGTG
1 ATAATTTAATAGTAAATTAATG
* *
8542436 ATAATTTAATAGTAAATCATTG
1 ATAATTTAATAGTAAATTAATG
* * *
8542458 AT-ATTTAGTAGTAAGTTAGTG
1 ATAATTTAATAGTAAATTAATG
*
8542479 ATAATTTAACAGTAAATTAATG
1 ATAATTTAATAGTAAATTAATG
* * *
8542501 ATAATTTAACAATCAA-TAATTG
1 ATAATTTAATAGTAAATTAA-TG
* * * *
8542523 ATAATTTAGTAATAAATCAATA
1 ATAATTTAATAGTAAATTAATG
** *
8542545 ATAACATAATAGTAAA-TACATA
1 ATAATTTAATAGTAAATTA-ATG
* *
8542567 ATAATTTAGTAGTAAATTAATT
1 ATAATTTAATAGTAAATTAATG
* * * *
8542589 ATAATATAGTTGTAAA-TACATA
1 ATAATTTAATAGTAAATTA-ATG
* ** *
8542611 ACAACATAATAGTAAATTAAGG
1 ATAATTTAATAGTAAATTAATG
* * **
8542633 ATAACTTAATA-AAAAAAAAGTG
1 ATAATTTAATAGTAAATTAA-TG
* * * *
8542655 AAAACTTAGTAGTTAATTAATG
1 ATAATTTAATAGTAAATTAATG
* *
8542677 ATAATTTAGTAATAAATTAAT-
1 ATAATTTAATAGTAAATTAATG
* *
8542698 ATAACTTAATAGTAAATTAGTG
1 ATAATTTAATAGTAAATTAATG
* *
8542720 ATAATTTAATAGTAAATCAATT
1 ATAATTTAATAGTAAATTAATG
* *
8542742 TTAGTTTAATAGT-AATTAAT-
1 ATAATTTAATAGTAAATTAATG
* * *
8542762 -TGA--TAGTAGTAAATT-ATAA
1 ATAATTTAATAGTAAATTAAT-G
* * * * *
8542781 ATAACTTAGTAATAAATCAATT
1 ATAATTTAATAGTAAATTAATG
* * *
8542803 ATAACTTAGTGGT--A-TAATTG
1 ATAATTTAATAGTAAATTAA-TG
* * * *
8542823 ATAATTTAGTAGTTAA-TCATCA
1 ATAATTTAATAGTAAATTAAT-G
* * *
8542845 AAAACTTAAAAGTAAATTAAT-
1 ATAATTTAATAGTAAATTAATG
* * * * *
8542866 ATAACTTAGTAGTATA-TCATCA
1 ATAATTTAATAGTAAATTAAT-G
*
8542888 ATAATTTAATAGTTAATT-ATG
1 ATAATTTAATAGTAAATTAATG
*
8542909 ATAATTTAAAAGTAAATT-ATG
1 ATAATTTAATAGTAAATTAATG
* **
8542930 AATAATTT-ATCA-TAAATCAGCG
1 -ATAATTTAAT-AGTAAATTAATG
* * * *
8542952 ATAACTTGAT-GTGAA-TCATG
1 ATAATTTAATAGTAAATTAATG
* * * * **
8542972 GTAACTTAGTAATAAATCGATG
1 ATAATTTAATAGTAAATTAATG
** *
8542994 ATAATTTTGTAGTATA-TAATTG
1 ATAATTTAATAGTAAATTAA-TG
* * * *
8543016 AAAATTAAATAGTAAATCAATA
1 ATAATTTAATAGTAAATTAATG
* * *
8543038 ATAATATAATAATAAA-TATATA
1 ATAATTTAATAGTAAATTA-ATG
* * * *
8543060 ATAATATAATAATAAATCATTG
1 ATAATTTAATAGTAAATTAATG
*
8543082 ATAATTTAATAGTAAATT-ATT
1 ATAATTTAATAGTAAATTAATG
*
8543103 ATTAATTTAATGGTAAAT
1 A-TAATTTAATAGTAAAT
8543121 CATGAATAAC
Statistics
Matches: 521, Mismatches: 147, Indels: 77
0.70 0.20 0.10
Matches are distributed among these distances:
17 8 0.02
18 4 0.01
19 3 0.01
20 26 0.05
21 115 0.22
22 345 0.66
23 20 0.04
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (22 bp):
ATAATTTAATAGTAAATTAATG
Found at i:8542759 original size:43 final size:42
Alignment explanation
Indices: 8542617--8542766 Score: 113
Period size: 43 Copynumber: 3.4 Consensus size: 42
8542607 CATAACAACA
* * ** *
8542617 TAATAGTAAATTAAGGATAACTTAATAA-AAAAAAAGTGAAAACT
1 TAATAGT-AATTAATGATAATTTAATAATAAATCAA-T-ATAACT
* * *
8542661 TAGTAGTTAATTAATGATAATTTAGTAATAAATTAATATAACT
1 TAATAG-TAATTAATGATAATTTAATAATAAATCAATATAACT
* * * **
8542704 TAATAGTAAATTAGTGATAATTTAATAGTAAATCAATTTTAGTT
1 TAATAGT-AATTAATGATAATTTAATAATAAATCAA-TATAACT
8542748 TAATAGTAATTAATTGATA
1 TAATAGTAATTAA-TGATA
8542767 GTAGTAAATT
Statistics
Matches: 85, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.01
43 39 0.46
44 39 0.46
45 6 0.07
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (42 bp):
TAATAGTAATTAATGATAATTTAATAATAAATCAATATAACT
Found at i:8542885 original size:43 final size:43
Alignment explanation
Indices: 8542823--8542906 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
8542813 GGTATAATTG
*
8542823 ATAATTTAGTAGTTAATCATCAAAAACTTAAAAGTAAATTAAT
1 ATAACTTAGTAGTTAATCATCAAAAACTTAAAAGTAAATTAAT
* * * *
8542866 ATAACTTAGTAG-TATATCATCAATAATTTAATAGTTAATTA
1 ATAACTTAGTAGTTA-ATCATCAAAAACTTAAAAGTAAATTA
8542907 TGATAATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (43 bp):
ATAACTTAGTAGTTAATCATCAAAAACTTAAAAGTAAATTAAT
Found at i:8542904 original size:65 final size:63
Alignment explanation
Indices: 8542793--8542927 Score: 155
Period size: 64 Copynumber: 2.1 Consensus size: 63
8542783 AACTTAGTAA
* * ** *
8542793 TAAATCAATTATAACTTAGTGGTATAATTGATAATTTAGTAGTTAATCATCAAAAACTTAAAAG
1 TAAATTAATTATAACTTAGTAGTATAATCAATAATTTAATAGTTAATCAT-AAAAACTTAAAAG
* * * *
8542857 TAAATTAA-TATAACTTAGTAGTATATCATCAATAATTTAATAGTTAATTATGATAATTTAAAAG
1 TAAATTAATTATAACTTAGTAGTATA--ATCAATAATTTAATAGTTAATCATAAAAACTTAAAAG
8542921 TAAATTA
1 TAAATTA
8542928 TGAATAATTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
63 16 0.27
64 24 0.40
65 20 0.33
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.39
Consensus pattern (63 bp):
TAAATTAATTATAACTTAGTAGTATAATCAATAATTTAATAGTTAATCATAAAAACTTAAAAG
Found at i:8542912 original size:21 final size:22
Alignment explanation
Indices: 8542887--8542938 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
8542877 GTATATCATC
* *
8542887 AATAATTTAATAGTTAATTATG
1 AATAATTTAAAAGTAAATTATG
8542909 -ATAATTTAAAAGTAAATTATG
1 AATAATTTAAAAGTAAATTATG
8542930 AATAATTTA
1 AATAATTTA
8542939 TCATAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (22 bp):
AATAATTTAAAAGTAAATTATG
Found at i:8543042 original size:3 final size:3
Alignment explanation
Indices: 8543034--8543074 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
8543024 ATAGTAAATC
8543034 AAT AAT AAT -AT AAT AAT AAAT ATAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT -AAT A-AT AAT AAT AAT AAT AAT AA
8543075 ATCATTGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.12
3 24 0.71
4 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:8543048 original size:8 final size:8
Alignment explanation
Indices: 8543035--8543073 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
8543025 TAGTAAATCA
8543035 ATAATAAT
1 ATAATAAT
8543043 ATAATAAT
1 ATAATAAT
8543051 A-AAT-AT
1 ATAATAAT
8543057 ATAATAAT
1 ATAATAAT
8543065 ATAATAAT
1 ATAATAAT
8543073 A
1 A
8543074 AATCATTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 3 0.10
7 6 0.21
8 20 0.69
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Found at i:8543166 original size:22 final size:22
Alignment explanation
Indices: 8543141--8543197 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
8543131 ATGAATAGCA
*
8543141 TAGTAGTAAATTACTAATAACT
1 TAGTAGTAAATTAATAATAACT
* *
8543163 TAGTTA-TAAATTAATGATAATT
1 TAG-TAGTAAATTAATAATAACT
*
8543185 TACTAGTAAATTA
1 TAGTAGTAAATTA
8543198 GTTAATAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.40
Consensus pattern (22 bp):
TAGTAGTAAATTAATAATAACT
Found at i:8543359 original size:22 final size:21
Alignment explanation
Indices: 8543334--8543403 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 21
8543324 TTATTGGTAT
* *
8543334 ATCATTCATAACTTAATGATAA
1 ATCATTGATAACTTAGT-ATAA
*
8543356 ATCATTGATAATTTAGTAGTAA
1 ATCATTGATAACTTAGTA-TAA
*
8543378 ATTATTGATAACTTAGTAATAA
1 ATCATTGATAACTTAGT-ATAA
8543400 ATCA
1 ATCA
8543404 CTAATATCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.39
Consensus pattern (21 bp):
ATCATTGATAACTTAGTATAA
Found at i:8543441 original size:22 final size:22
Alignment explanation
Indices: 8543397--8543441 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8543387 AACTTAGTAA
* * *
8543397 TAAATCACTAATATCATAGTTG
1 TAAATCAATAATAACATAATTG
*
8543419 TAAATCAATAATAACTTAATTG
1 TAAATCAATAATAACATAATTG
8543441 T
1 T
8543442 TAATTATTGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (22 bp):
TAAATCAATAATAACATAATTG
Found at i:8543759 original size:18 final size:18
Alignment explanation
Indices: 8543736--8543772 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8543726 AAAAGTGATA
* *
8543736 ACTTAATAGTTAATCATT
1 ACTTAATAATAAATCATT
8543754 ACTTAATAATAAATCATT
1 ACTTAATAATAAATCATT
8543772 A
1 A
8543773 ATAACATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.41
Consensus pattern (18 bp):
ACTTAATAATAAATCATT
Found at i:8543798 original size:22 final size:22
Alignment explanation
Indices: 8543773--8543815 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8543763 TAAATCATTA
8543773 ATAACATAATAGTAAATTAGTG
1 ATAACATAATAGTAAATTAGTG
**
8543795 ATAAGTTAATAGTAAATTAGT
1 ATAACATAATAGTAAATTAGT
8543816 TTCATTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.02, G:0.14, T:0.35
Consensus pattern (22 bp):
ATAACATAATAGTAAATTAGTG
Found at i:8544480 original size:29 final size:29
Alignment explanation
Indices: 8544421--8544486 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
8544411 ATTATTAAAA
**
8544421 ATTAATATTTTAATAATAAATAGTATTAT
1 ATTAATATTTTAATAATAAATAGTAACAT
*
8544450 ATTATTATTTTAATAATAAATCA-TAACAT
1 ATTAATATTTTAATAATAAAT-AGTAACAT
8544479 ATATAATA
1 AT-TAATA
8544487 ATATTTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (29 bp):
ATTAATATTTTAATAATAAATAGTAACAT
Found at i:8544491 original size:39 final size:39
Alignment explanation
Indices: 8544448--8544544 Score: 99
Period size: 42 Copynumber: 2.4 Consensus size: 39
8544438 AAATAGTATT
8544448 ATATTATTATTTTAATAATAAATCATAACAT-ATATAATA
1 ATATTATTATTTTAATAATAAATCATAA-ATAATATAATA
* ** *
8544487 ATATTTTTATTATTTTAATAATTAATGTTAAATAATGTAATA
1 ATA---TTATTATTTTAATAATAAATCATAAATAATATAATA
8544529 ATATTATT-TTCTTAAT
1 ATATTATTATT-TTAAT
8544545 GTGAATATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
38 2 0.04
39 13 0.27
41 2 0.04
42 32 0.65
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (39 bp):
ATATTATTATTTTAATAATAAATCATAAATAATATAATA
Found at i:8544833 original size:23 final size:22
Alignment explanation
Indices: 8544766--8544833 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 22
8544756 TAATAGTATA
*
8544766 AATATTTTAACAATA-AATATT
1 AATATTTTAACAATATAATAAT
* * * *
8544787 ACTATTTTAATATTAATAAAAAT
1 AATATTTTAACAAT-ATAATAAT
*
8544810 AATATTTTAAGAATAGTAATAAT
1 AATATTTTAACAATA-TAATAAT
8544833 A
1 A
8544834 TTCTAAATAT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
21 11 0.31
22 2 0.06
23 22 0.63
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (22 bp):
AATATTTTAACAATATAATAAT
Found at i:8544889 original size:15 final size:16
Alignment explanation
Indices: 8544869--8544898 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8544859 TAAAAAATAA
8544869 TAAATATTTT-TATTT
1 TAAATATTTTATATTT
8544884 TAAATATTTTATATT
1 TAAATATTTTATATT
8544899 AACATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TAAATATTTTATATTT
Found at i:8544909 original size:18 final size:18
Alignment explanation
Indices: 8544886--8544986 Score: 63
Period size: 18 Copynumber: 5.7 Consensus size: 18
8544876 TTTTATTTTA
*
8544886 AATATTTT-ATATTAACAT
1 AATATTTTAATATGAA-AT
8544904 AATATTTTAATATGAAAT
1 AATATTTTAATATGAAAT
*
8544922 AATATTATTAAAATAT-AATT
1 AATATT-TT--AATATGAAAT
* **
8544942 AGT-TTTTAATATTTAAT
1 AATATTTTAATATGAAAT
8544959 -A-ATTTTAATAAT-AAAT
1 AATATTTTAAT-ATGAAAT
8544975 AAT-TTTTAATAT
1 AATATTTTAATAT
8544987 TTTAATAGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 20
0.71 0.07 0.21
Matches are distributed among these distances:
16 17 0.25
17 12 0.18
18 18 0.27
19 10 0.15
20 5 0.07
21 5 0.07
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (18 bp):
AATATTTTAATATGAAAT
Found at i:8544959 original size:34 final size:34
Alignment explanation
Indices: 8544864--8544998 Score: 97
Period size: 34 Copynumber: 4.0 Consensus size: 34
8544854 TAATATAAAA
*
8544864 AATAATAAAT-ATTTTT-AT-TTTAAATATT-TT
1 AATAATAAATAATTTTTAATATTTTAATATTATT
* **
8544894 -ATATTAACATAATATTTTAATATGAAATAATATTATT
1 AATAATAA-ATAAT-TTTTAATAT--TTTAATATTATT
*
8544931 AA-AATATAATTAGTTTTTAATA-TTTAATAATT-TT
1 AATAATA-AA-TAATTTTTAATATTTTAAT-ATTATT
8544965 AATAATAAATAATTTTTAATATTTTAATAGTTAT
1 AATAATAAATAATTTTTAATATTTTAATA-TTAT
8544999 ATTAATATTA
Statistics
Matches: 80, Mismatches: 9, Indels: 27
0.69 0.08 0.23
Matches are distributed among these distances:
29 6 0.08
30 2 0.03
31 2 0.03
32 4 0.05
33 14 0.17
34 19 0.24
35 8 0.10
36 6 0.08
37 14 0.17
38 5 0.06
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (34 bp):
AATAATAAATAATTTTTAATATTTTAATATTATT
Found at i:8544960 original size:37 final size:34
Alignment explanation
Indices: 8544864--8544993 Score: 103
Period size: 37 Copynumber: 3.8 Consensus size: 34
8544854 TAATATAAAA
*
8544864 AATAATAAAT-ATTTTT-AT-TTTAA-ATATTTT
1 AATAATAAATAATTTTTAATATTTAATAAATTTT
* **
8544894 -ATATTAACATAATATTTTAATATGAAATAATATTATT
1 AATAATAA-ATAAT-TTTTAATATTTAATAA-ATT-TT
*
8544931 AA-AATATAATTAGTTTTTAATATTTAAT-AATTTT
1 AATAATA-AA-TAATTTTTAATATTTAATAAATTTT
8544965 AATAATAAATAATTTTTAATATTTTAATA
1 AATAATAAATAATTTTTAATA-TTTAATA
8544994 GTTATATTAA
Statistics
Matches: 77, Mismatches: 9, Indels: 23
0.71 0.08 0.21
Matches are distributed among these distances:
29 6 0.08
30 2 0.03
31 2 0.03
32 4 0.05
33 13 0.17
34 15 0.19
35 8 0.10
36 4 0.05
37 18 0.23
38 5 0.06
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.51
Consensus pattern (34 bp):
AATAATAAATAATTTTTAATATTTAATAAATTTT
Found at i:8544964 original size:16 final size:17
Alignment explanation
Indices: 8544902--8545007 Score: 70
Period size: 18 Copynumber: 5.9 Consensus size: 17
8544892 TTATATTAAC
**
8544902 ATAATATTTTAATATGAA
1 ATAAT-TTTTAATATTTA
* *
8544920 ATAATATTATTAAAATATA
1 ATAAT-TT-TTAATATTTA
*
8544939 ATTAGTTTTTAATATTTA
1 A-TAATTTTTAATATTTA
* *
8544957 ATAA-TTTTAATAATAA
1 ATAATTTTTAATATTTA
8544973 ATAATTTTTAATATTTTA
1 ATAATTTTTAATA-TTTA
*
8544991 ATAGTTATATTAATATT
1 ATAATT-T-TTAATATT
8545008 ATTTAAAAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
16 14 0.20
17 10 0.14
18 24 0.34
19 13 0.19
20 9 0.13
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATAATTTTTAATATTTA
Found at i:8545507 original size:22 final size:22
Alignment explanation
Indices: 8545482--8545523 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8545472 ATGCAAACAA
* *
8545482 GTGATAATTTAGTTGTAAATCG
1 GTGATAATTTAATAGTAAATCG
8545504 GTGATAATTTAATAGTAAAT
1 GTGATAATTTAATAGTAAAT
8545524 TAGTTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (22 bp):
GTGATAATTTAATAGTAAATCG
Found at i:8545616 original size:44 final size:44
Alignment explanation
Indices: 8545568--8545764 Score: 141
Period size: 44 Copynumber: 4.5 Consensus size: 44
8545558 ATAAATCAAC
*
8545568 AGTAAATTAATTATAACTTTA-TAATAAATTATCAATAATTTAAT
1 AGTAAATTAATTATAA-TTTAGTAATAAATTATTAATAATTTAAT
* * * * * *
8545612 AGTAAAATCATTAATAATTTAGTGATAAATTATTTATAAATTAGT
1 AGTAAATTAATT-ATAATTTAGTAATAAATTATTAATAATTTAAT
* * * *
8545657 AGTAAATCAATGT-TAATTTAGTAGTAAATAATTGATAATTTAAT
1 AGTAAATTAAT-TATAATTTAGTAATAAATTATTAATAATTTAAT
* * * * * **
8545701 ACTAAATCT--TTGATAGTTTAATAATAAATCATTGATAACATAAT
1 AGTAAAT-TAATT-ATAATTTAGTAATAAATTATTAATAATTTAAT
* *
8545745 AGTAAGTTAATAATAATTTA
1 AGTAAATTAATTATAATTTA
8545765 ATTATCAATC
Statistics
Matches: 117, Mismatches: 28, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 82 0.70
45 31 0.26
46 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (44 bp):
AGTAAATTAATTATAATTTAGTAATAAATTATTAATAATTTAAT
Found at i:8545745 original size:22 final size:22
Alignment explanation
Indices: 8545580--8545738 Score: 113
Period size: 22 Copynumber: 7.2 Consensus size: 22
8545570 TAAATTAATT
* **
8545580 ATAACTTT-ATAATAAATTATCA
1 ATAA-TTTAATAATAAATCATTG
* *
8545602 ATAATTTAATAGTAAAATCATTA
1 ATAATTTAATAAT-AAATCATTG
* * * *
8545625 ATAATTTAGTGATAAATTATTT
1 ATAATTTAATAATAAATCATTG
* * * *
8545647 ATAAATTAGTAGTAAATCAATG
1 ATAATTTAATAATAAATCATTG
* * * *
8545669 TTAATTTAGTAGTAAATAATTG
1 ATAATTTAATAATAAATCATTG
* *
8545691 ATAATTTAATACTAAATCTTTG
1 ATAATTTAATAATAAATCATTG
*
8545713 ATAGTTTAATAATAAATCATTG
1 ATAATTTAATAATAAATCATTG
8545735 ATAA
1 ATAA
8545739 CATAATAGTA
Statistics
Matches: 108, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
21 3 0.03
22 88 0.81
23 17 0.16
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.42
Consensus pattern (22 bp):
ATAATTTAATAATAAATCATTG
Found at i:8546106 original size:43 final size:42
Alignment explanation
Indices: 8546058--8546209 Score: 123
Period size: 43 Copynumber: 3.7 Consensus size: 42
8546048 TATAATTTAT
* **
8546058 CAAAATTATATGAAATGTTATCAAAATTACATTAAAAAGTTAC
1 CAAAATTATATAAAAAATTATCAAAATTACATTAAAAA-TTAC
* * *
8546101 CAAAATTTTATAAAAAATTATCAAAATTATATTAATAATTAC
1 CAAAATTATATAAAAAATTATCAAAATTACATTAAAAATTAC
* * * * * *
8546143 C-AAATT-TATCATAAATTA-CTAAATTAATATTAAAGATTAT
1 CAAAATTATATAAAAAATTATCAAAATT-ACATTAAAAATTAC
* **
8546183 TAAAATTATATCGAAAATTAT-AAAATT
1 CAAAATTATATAAAAAATTATCAAAATT
8546210 TTATTAAACT
Statistics
Matches: 89, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
39 6 0.07
40 21 0.24
41 10 0.11
42 20 0.22
43 32 0.36
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (42 bp):
CAAAATTATATAAAAAATTATCAAAATTACATTAAAAATTAC
Found at i:8546140 original size:21 final size:21
Alignment explanation
Indices: 8546029--8546216 Score: 99
Period size: 21 Copynumber: 9.0 Consensus size: 21
8546019 CATAAAATTT
*
8546029 ATAATTA-CAGAAAATATATT-
1 ATAATTATCA-AAATTATATTA
*
8546049 ATAATTTATCAAAATTATATGA
1 ATAA-TTATCAAAATTATATTA
* *
8546071 A-ATGTTATCAAAATTACATTA
1 ATA-ATTATCAAAATTATATTA
* * * *
8546092 AAAAGTTACCAAAATTTTATAA
1 ATAA-TTATCAAAATTATATTA
*
8546114 AAAATTATCAAAATTATATTA
1 ATAATTATCAAAATTATATTA
* *
8546135 ATAATTA-CCAAATT-TA-TC
1 ATAATTATCAAAATTATATTA
*
8546153 ATAAATTA-CTAAATTAATATTA
1 AT-AATTATCAAAATT-ATATTA
* *
8546175 A-AGATTATTAAAATTATATCGA
1 ATA-ATTATCAAAATTATAT-TA
*
8546197 A-AATTAT-AAAATTTTATTA
1 ATAATTATCAAAATTATATTA
8546216 A
1 A
8546217 ACTCCTTACA
Statistics
Matches: 132, Mismatches: 23, Indels: 27
0.73 0.13 0.15
Matches are distributed among these distances:
18 3 0.02
19 15 0.11
20 20 0.15
21 63 0.48
22 31 0.23
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.38
Consensus pattern (21 bp):
ATAATTATCAAAATTATATTA
Found at i:8546173 original size:40 final size:43
Alignment explanation
Indices: 8546075--8546217 Score: 127
Period size: 40 Copynumber: 3.4 Consensus size: 43
8546065 ATATGAAATG
*
8546075 TTATCAAAATTACATTAAAAAGTTACCAAAATTTTATAAAAAA
1 TTATCAAAATTATATTAAAAAGTTACCAAAATTTTATAAAAAA
* * *
8546118 TTATCAAAATTATATTAATAA-TTACC-AAA-TTTATCATAAA
1 TTATCAAAATTATATTAAAAAGTTACCAAAATTTTATAAAAAA
* * ** * **
8546158 TTA-CTAAATTAATATTAAAGA-TTATTAAAATTATATCGAAAA
1 TTATCAAAATT-ATATTAAAAAGTTACCAAAATTTTATAAAAAA
*
8546200 TTAT-AAAATTTTATTAAA
1 TTATCAAAATTATATTAAA
8546218 CTCCTTACAA
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
39 6 0.07
40 23 0.28
41 13 0.16
42 21 0.26
43 19 0.23
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (43 bp):
TTATCAAAATTATATTAAAAAGTTACCAAAATTTTATAAAAAA
Found at i:8548254 original size:234 final size:237
Alignment explanation
Indices: 8547866--8548379 Score: 610
Period size: 234 Copynumber: 2.2 Consensus size: 237
8547856 TAATATCATT
* * *
8547866 TAAAATAAAAAATCACAAAAAAATTTCTCGCCAAATAAATTT-GTCGGTAAAAGTTTATGACATT
1 TAAAA-AAAAAA-CACAAAAAAATTTTTC-ACAAATAAATTTGGTCGCTAAAAGTTTATGACATT
* * * *
8547930 TATGTTGTCATTATATAACACCATACATTGACGTGACAAAATTGCAATGTTATTAATAGTTAACT
63 TATGTTGTCATCATATAACACCATACATTGACGTGACAAAATAGCAATGTCATTAATAATTAACT
* * * * * *
8547995 AAAGTGTTCAATTTGTGATAAAAATTCATAACGTCACCTAAAATCTAT-AAAAAAATTTATTATA
128 AAAATGTTCAATTTGTAACAAAAATTAACAACGTCACCTAAAATCTATCAAAAAAATTTATCATA
* **
8548059 GATAAAATTTTAAATTGGTGAC-AAAATTATAACGTCATTTCAA-A
193 GATAAAATTTTAAATTGATGACAAAAATTATAACGTCACCT-AAGA
* *
8548103 TAAAAAAAAAACATAACAAAAATTTTTCACAAAATAAATTTGGT-GCTAAAAGTTTGTGACATTT
1 TAAAAAAAAAACACAA-AAAAATTTTTCAC-AAATAAATTTGGTCGCTAAAAGTTTATGACATTT
** * *
8548167 ATGTT-TTGTCATATAA-ATCATACATTGACGTGACGAAATAGCAATGTCATTAATAATTAACTA
64 ATGTTGTCATCATATAACACCATACATTGACGTGACAAAATAGCAATGTCATTAATAATTAACTA
* * * * * * *
8548230 AAATGTTCATTTTGTAACAAAAATTAACAATGTTACTTAAAATCTATCAGAAAAATTTGTCGTAG
129 AAATGTTCAATTTGTAACAAAAATTAACAACGTCACCTAAAATCTATCAAAAAAATTTATCATAG
* *
8548295 ATAAAATTTTAAATTGATGACAAAAATTGTAATGTCACCTAAGA
194 ATAAAATTTTAAATTGATGACAAAAATTATAACGTCACCTAAGA
*** *
8548339 TAAAAAAATGTCACAAAAAATTTTTTCACAAATAAATTTGG
1 TAAAAAAAAAACACAAAAAAATTTTTCACAAATAAATTTGG
8548380 CAATAAAAAT
Statistics
Matches: 235, Mismatches: 36, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
234 92 0.39
235 60 0.26
236 76 0.32
237 7 0.03
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.33
Consensus pattern (237 bp):
TAAAAAAAAAACACAAAAAAATTTTTCACAAATAAATTTGGTCGCTAAAAGTTTATGACATTTAT
GTTGTCATCATATAACACCATACATTGACGTGACAAAATAGCAATGTCATTAATAATTAACTAAA
ATGTTCAATTTGTAACAAAAATTAACAACGTCACCTAAAATCTATCAAAAAAATTTATCATAGAT
AAAATTTTAAATTGATGACAAAAATTATAACGTCACCTAAGA
Found at i:8558274 original size:13 final size:13
Alignment explanation
Indices: 8558256--8558314 Score: 68
Period size: 13 Copynumber: 4.6 Consensus size: 13
8558246 TGCAACTGAG
8558256 GTATTTTTTTTTA
1 GTATTTTTTTTTA
8558269 GTATTTTTTTTTA
1 GTATTTTTTTTTA
*
8558282 TTTATTTTTTTTTA
1 -GTATTTTTTTTTA
* *
8558296 -T-GTTTTTTTTG
1 GTATTTTTTTTTA
8558307 GTATTTTT
1 GTATTTTT
8558315 GCATGATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
11 8 0.21
12 2 0.05
13 17 0.44
14 12 0.31
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.80
Consensus pattern (13 bp):
GTATTTTTTTTTA
Found at i:8558536 original size:8 final size:8
Alignment explanation
Indices: 8558523--8558557 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
8558513 TTTTCAAACA
8558523 AAAAATAT
1 AAAAATAT
8558531 AAAAATAT
1 AAAAATAT
8558539 AAAAATAT
1 AAAAATAT
*
8558547 AAAAGTAT
1 AAAAATAT
8558555 AAA
1 AAA
8558558 TATTTTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (8 bp):
AAAAATAT
Found at i:8561424 original size:24 final size:23
Alignment explanation
Indices: 8561381--8561426 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
8561371 AAATAAGTGA
8561381 TTGAAGCTAGAAATAGAAGAAAGC
1 TTGAAGCTAGAAATA-AAGAAAGC
8561405 TTGAAGCTTAGAGAAT-AAGAAA
1 TTGAAGC-TAGA-AATAAAGAAA
8561427 TCCAAAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
24 13 0.65
25 4 0.20
26 3 0.15
ACGTcount: A:0.50, C:0.07, G:0.24, T:0.20
Consensus pattern (23 bp):
TTGAAGCTAGAAATAAAGAAAGC
Found at i:8570357 original size:45 final size:44
Alignment explanation
Indices: 8570293--8570579 Score: 335
Period size: 44 Copynumber: 6.5 Consensus size: 44
8570283 GACTTTTTTT
* ** *
8570293 ATTAGAGGAGCTTTGTTTATTTTTTCTAAAATTATTAAGCCTCTG
1 ATTAGAAGAGCTTTGTTTATTTTTTC-AAAATCGTTGAGCCTCTG
* *
8570338 ATTAGAAGAGCTTTGTTTATTTTTTCCAAAGTCGTTGAGCCTCTT
1 ATTAGAAGAGCTTTGTTTATTTTTT-CAAAATCGTTGAGCCTCTG
* * * *
8570383 ATTAG-AGAGCTTTGTTTATTTTTTCAAATTCGTTAAACCTTTG
1 ATTAGAAGAGCTTTGTTTATTTTTTCAAAATCGTTGAGCCTCTG
* * *
8570426 ATTAGAGGAGTTTTGTTTATTTTTCCAAAATCGTTGAGCCTCTG
1 ATTAGAAGAGCTTTGTTTATTTTTTCAAAATCGTTGAGCCTCTG
* *
8570470 ATTAGAGGAGCTTGGTTTATTTTTTTCAAAATCGTTGAGCCTCTG
1 ATTAGAAGAGCTTTGTTTA-TTTTTTCAAAATCGTTGAGCCTCTG
* * *
8570515 ATTATAAGAGCTTTGTTTA-TTTTTCAAAAGTCATTGAGCCTCAG
1 ATTAGAAGAGCTTTGTTTATTTTTTCAAAA-TCGTTGAGCCTCTG
* **
8570559 TTTAGAAGAATTTTGTTTATT
1 ATTAGAAGAGCTTTGTTTATT
8570580 CTCCAAAAAT
Statistics
Matches: 207, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
43 29 0.14
44 94 0.45
45 83 0.40
46 1 0.00
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (44 bp):
ATTAGAAGAGCTTTGTTTATTTTTTCAAAATCGTTGAGCCTCTG
Found at i:8570538 original size:132 final size:133
Alignment explanation
Indices: 8570293--8570542 Score: 378
Period size: 132 Copynumber: 1.9 Consensus size: 133
8570283 GACTTTTTTT
* * *
8570293 ATTAGAGGAGCTTTGTTTATTTTTTCTAAAATTATTAAGCCTCTGATTAGAAGAGCTTTGTTTAT
1 ATTAGAGGAGCTTTGTTTATTTTTTCCAAAATCATTAAGCCTCTGATTAGAAGAGCTTGGTTTAT
* * *
8570358 TTTTTCCAAAGTCGTTGAGCCTCTTATTAGAGAGCTTTGTTTATTTTTTCAAATTCGTTAAACCT
66 TTTTTCCAAAATCGTTGAGCCTCTGATTAAAGAGCTTTGTTTATTTTTTCAAATTCGTTAAACCT
8570423 TTG
131 TTG
* * * *
8570426 ATTAGAGGAGTTTTGTTTA-TTTTTCCAAAATCGTTGAGCCTCTGATTAGAGGAGCTTGGTTTAT
1 ATTAGAGGAGCTTTGTTTATTTTTTCCAAAATCATTAAGCCTCTGATTAGAAGAGCTTGGTTTAT
*
8570490 TTTTTTCAAAATCGTTGAGCCTCTGATTATAAGAGCTTTGTTTA-TTTTTCAAA
66 TTTTTCCAAAATCGTTGAGCCTCTGATTA-AAGAGCTTTGTTTATTTTTTCAAA
8570543 AGTCATTGAG
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
132 74 0.70
133 31 0.30
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (133 bp):
ATTAGAGGAGCTTTGTTTATTTTTTCCAAAATCATTAAGCCTCTGATTAGAAGAGCTTGGTTTAT
TTTTTCCAAAATCGTTGAGCCTCTGATTAAAGAGCTTTGTTTATTTTTTCAAATTCGTTAAACCT
TTG
Found at i:8570539 original size:89 final size:88
Alignment explanation
Indices: 8570293--8570579 Score: 362
Period size: 89 Copynumber: 3.2 Consensus size: 88
8570283 GACTTTTTTT
**
8570293 ATTAGAGGAGCTTTGTTTATTTTTTCTAAAATTATTAAGCCTCTGATTAGAAGAGCTTTGTTTAT
1 ATTAGAGGAGCTTTGTTTATTTTTTC-AAAATCGTTAAGCCTCTGATTAGAAGAGCTTTGTTTA-
* *
8570358 TTTTTCCAAAGTCGTTGAGCCTCTT
64 TTTTTCCAAAATCGTTGAGCCTCTG
* * * * *
8570383 ATTAGA-GAGCTTTGTTTATTTTTTCAAATTCGTTAAACCTTTGATTAGAGGAGTTTTGTTTATT
1 ATTAGAGGAGCTTTGTTTATTTTTTCAAAATCGTTAAGCCTCTGATTAGAAGAGCTTTGTTTATT
8570447 TTTCCAAAATCGTTGAGCCTCTG
66 TTTCCAAAATCGTTGAGCCTCTG
* * *
8570470 ATTAGAGGAGCTTGGTTTATTTTTTTCAAAATCGTTGAGCCTCTGATTATAAGAGCTTTGTTTAT
1 ATTAGAGGAGCTTTGTTTA-TTTTTTCAAAATCGTTAAGCCTCTGATTAGAAGAGCTTTGTTTAT
* *
8570535 TTTT-CAAAAGTCATTGAGCCTCAG
65 TTTTCCAAAA-TCGTTGAGCCTCTG
* * **
8570559 TTTAGAAGAATTTTGTTTATT
1 ATTAGAGGAGCTTTGTTTATT
8570580 CTCCAAAAAT
Statistics
Matches: 170, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
87 29 0.17
88 48 0.28
89 87 0.51
90 6 0.04
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (88 bp):
ATTAGAGGAGCTTTGTTTATTTTTTCAAAATCGTTAAGCCTCTGATTAGAAGAGCTTTGTTTATT
TTTCCAAAATCGTTGAGCCTCTG
Found at i:8570607 original size:132 final size:131
Alignment explanation
Indices: 8570304--8570611 Score: 334
Period size: 132 Copynumber: 2.3 Consensus size: 131
8570294 TTAGAGGAGC
* * * * *
8570304 TTTGTTTATTTTTTCTAAAATTATTAAGCCTCTGATTAGAAGAGCTTTGTTTATTTTTTCCAAAG
1 TTTGTTTA-TTTCTCCAAAATTATGAA-CCTCTGATTAGAAGAGCTTGGTTTATTTTTTCCAAAA
* * * * ** *
8570369 TCGTTGAGCCTCTTATTAGAGAGCTTTGTTTATTTTTTCAAATTCGTTAAACCTTTGATTAGAGG
64 TCGTTGAGCCTCTGATTAAAGAGCTTTGTTTATTTTTTCAAAGTCATTAAACCTCAGATTAGAAG
*
8570434 AGT
129 AAT
* * * *
8570437 TTTGTTTATTTTTCCAAAATCGT-TGAGCCTCTGATTAGAGGAGCTTGGTTTATTTTTTTCAAAA
1 TTTGTTTATTTCTCCAAAAT--TATGAACCTCTGATTAGAAGAGCTTGGTTTATTTTTTCCAAAA
* * *
8570501 TCGTTGAGCCTCTGATTATAAGAGCTTTGTTTA-TTTTTCAAAAGTCATTGAGCCTCAGTTTAGA
64 TCGTTGAGCCTCTGATTA-AAGAGCTTTGTTTATTTTTTC-AAAGTCATTAAACCTCAGATTAGA
8570565 AGAAT
127 AGAAT
* *
8570570 TTTGTTTA-TTCTCCAAAAATTATGAACCTCCGCTTAGAAGAG
1 TTTGTTTATTTCTCC-AAAATTATGAACCTCTGATTAGAAGAG
8570612 TTTTAGGTAA
Statistics
Matches: 146, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
131 1 0.01
132 88 0.60
133 56 0.38
134 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.44
Consensus pattern (131 bp):
TTTGTTTATTTCTCCAAAATTATGAACCTCTGATTAGAAGAGCTTGGTTTATTTTTTCCAAAATC
GTTGAGCCTCTGATTAAAGAGCTTTGTTTATTTTTTCAAAGTCATTAAACCTCAGATTAGAAGAA
T
Found at i:8571213 original size:11 final size:11
Alignment explanation
Indices: 8571199--8571224 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8571189 TTTAGAATTT
8571199 TTTTTTGGAAA
1 TTTTTTGGAAA
8571210 TTTTTTGGAAA
1 TTTTTTGGAAA
8571221 TTTT
1 TTTT
8571225 ATCATATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (11 bp):
TTTTTTGGAAA
Found at i:8573819 original size:58 final size:58
Alignment explanation
Indices: 8573748--8573863 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 58
8573738 GATGTTTTAA
*
8573748 AATAACTGGACCATTTCATTTGTGGTAATTATAACTTCTAACCATATTCTTTAGAGTC
1 AATAACTGGACCATTTCATCTGTGGTAATTATAACTTCTAACCATATTCTTTAGAGTC
* * *
8573806 AATAACTGTACCATTTCATCTGTGGTAATTATAACTTCTAACTATATTCTTTGGAGTC
1 AATAACTGGACCATTTCATCTGTGGTAATTATAACTTCTAACCATATTCTTTAGAGTC
8573864 CTTTTCTCTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (58 bp):
AATAACTGGACCATTTCATCTGTGGTAATTATAACTTCTAACCATATTCTTTAGAGTC
Found at i:8573839 original size:29 final size:28
Alignment explanation
Indices: 8573749--8573841 Score: 68
Period size: 29 Copynumber: 3.2 Consensus size: 28
8573739 ATGTTTTAAA
*
8573749 ATAACTGGACCATTTCATTTGTGGTAATT
1 ATAACTGTACCATTTCA-TTGTGGTAATT
* *
8573778 ATAACTTCTAACCATATTC-TT-TAGAGTCA--
1 ATAAC-TGT-ACCAT-TTCATTGT-G-GTAATT
8573807 ATAACTGTACCATTTCATCTGTGGTAATT
1 ATAACTGTACCATTTCAT-TGTGGTAATT
8573836 ATAACT
1 ATAACT
8573842 TCTAACTATA
Statistics
Matches: 49, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
26 3 0.06
27 9 0.18
28 4 0.08
29 18 0.37
30 4 0.08
31 8 0.16
32 3 0.06
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (28 bp):
ATAACTGTACCATTTCATTGTGGTAATT
Found at i:8583934 original size:6 final size:6
Alignment explanation
Indices: 8583925--8583974 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
8583915 ATTTTTTAAT
8583925 TTTATA TTTATA --TATA TTTATA TATT-TA TTTA-A TTTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA T-TTATA TTTATA -TTTATA TTTATA
8583971 TTTA
1 TTTA
8583975 AAAAAATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
4 4 0.11
5 3 0.08
6 28 0.74
7 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTATA
Found at i:8583938 original size:8 final size:8
Alignment explanation
Indices: 8583925--8583971 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
8583915 ATTTTTTAAT
8583925 TTTATAT-
1 TTTATATA
8583932 TTATATATA
1 TT-TATATA
8583941 TTTATATA
1 TTTATATA
*
8583949 TTTATTTAA
1 TTTATAT-A
8583958 TTT-TATA
1 TTTATATA
8583965 TTTATAT
1 TTTATAT
8583972 TTAAAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
7 6 0.18
8 22 0.65
9 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TTTATATA
Found at i:8583946 original size:16 final size:18
Alignment explanation
Indices: 8583921--8583971 Score: 72
Period size: 16 Copynumber: 2.9 Consensus size: 18
8583911 AATTATTTTT
8583921 TAATTTTATATTTATATA
1 TAATTTTATATTTATATA
8583939 T-ATTTATATATTTAT-T-
1 TAATTT-TATATTTATATA
8583955 TAATTTTATATTTATAT
1 TAATTTTATATTTATAT
8583972 TTAAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 10 0.33
17 10 0.33
18 10 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TAATTTTATATTTATATA
Found at i:8583972 original size:18 final size:18
Alignment explanation
Indices: 8583919--8583975 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
8583909 AAAATTATTT
8583919 TTTAATTTTATATTTATA
1 TTTAATTTTATATTTATA
*
8583937 TAT-A-TTTATATATT-TA
1 TTTAATTTTATAT-TTATA
8583953 TTTAATTTTATATTTATA
1 TTTAATTTTATATTTATA
8583971 TTTAA
1 TTTAA
8583976 AAAAATAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
16 11 0.33
17 6 0.18
18 16 0.48
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTAATTTTATATTTATA
Found at i:8583988 original size:21 final size:22
Alignment explanation
Indices: 8583962--8584004 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8583952 ATTTAATTTT
8583962 ATATTT-ATATTTAAAAAAATA
1 ATATTTGATATTTAAAAAAATA
*
8583983 ATATTTGATATTTTAAAAAATA
1 ATATTTGATATTTAAAAAAATA
8584005 TTTTATTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
ATATTTGATATTTAAAAAAATA
Found at i:8587955 original size:22 final size:22
Alignment explanation
Indices: 8587930--8587972 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8587920 TATATATTTA
*
8587930 TATTTATATCCCTATAATTAAG
1 TATTTATATCCCTAAAATTAAG
* *
8587952 TATTTGTATCTCTAAAATTAA
1 TATTTATATCCCTAAAATTAA
8587973 AGACAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.47
Consensus pattern (22 bp):
TATTTATATCCCTAAAATTAAG
Found at i:8591972 original size:2 final size:2
Alignment explanation
Indices: 8591965--8591991 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8591955 TCTTATAATC
8591965 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8591992 TTGTATCCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8592032 original size:22 final size:22
Alignment explanation
Indices: 8591989--8592032 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8591979 TATATATATA
* *
8591989 TATTTGTATCCCTAAAACTAAG
1 TATTTATATCACTAAAACTAAG
* *
8592011 TATTTATATCACTGAAATTAAG
1 TATTTATATCACTAAAACTAAG
8592033 GATAAAAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (22 bp):
TATTTATATCACTAAAACTAAG
Found at i:8595147 original size:21 final size:21
Alignment explanation
Indices: 8595123--8595169 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
8595113 TAAGAAAGTT
8595123 AAATTATATTTTTTTTTTGTA
1 AAATTATATTTTTTTTTTGTA
* *
8595144 AAATTTTCTTTTTTTTTTGTA
1 AAATTATATTTTTTTTTTGTA
8595165 AAATT
1 AAATT
8595170 TTTGTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (21 bp):
AAATTATATTTTTTTTTTGTA
Found at i:8595172 original size:22 final size:21
Alignment explanation
Indices: 8595131--8595171 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8595121 TTAAATTATA
8595131 TTTTTTTTTTGTAAAATTTTC
1 TTTTTTTTTTGTAAAATTTTC
8595152 TTTTTTTTTTGTAAAATTTT
1 TTTTTTTTTTGTAAAATTTT
8595172 TGTAAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTTTTTTTGTAAAATTTTC
Found at i:8595482 original size:20 final size:20
Alignment explanation
Indices: 8595436--8595474 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8595426 GGGGAAGGCA
8595436 AGTGGGGAAGGATTGGGTGG
1 AGTGGGGAAGGATTGGGTGG
*
8595456 AGTGGGGAGGGATTGGGTG
1 AGTGGGGAAGGATTGGGTG
8595475 TGGTGGGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.62, T:0.21
Consensus pattern (20 bp):
AGTGGGGAAGGATTGGGTGG
Found at i:8605144 original size:27 final size:25
Alignment explanation
Indices: 8605109--8605168 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 25
8605099 TAGTTCATTA
*
8605109 TTTTTATTCATATTCTATTTC--TTT
1 TTTTTCTTC-TATTCTATTTCTTTTT
*
8605133 TTTTTC--ATATTCTATTTCTTTTT
1 TTTTTCTTCTATTCTATTTCTTTTT
8605156 TTTTTCTTCTATT
1 TTTTTCTTCTATT
8605169 TGTTTGTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 11 0.38
23 9 0.31
24 5 0.17
25 4 0.14
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTTTCTTCTATTCTATTTCTTTTT
Found at i:8605169 original size:20 final size:21
Alignment explanation
Indices: 8605109--8605158 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
8605099 TAGTTCATTA
*
8605109 TTTTTATTCATATTCTATTTC
1 TTTTTTTTCATATTCTATTTC
8605130 TTTTTTTTCATATTCTATTTC
1 TTTTTTTTCATATTCTATTTC
8605151 TTTTTTTT
1 TTTTTTTT
8605159 TTCTTCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTTTTCATATTCTATTTC
Found at i:8606255 original size:978 final size:965
Alignment explanation
Indices: 8604381--8606265 Score: 2369
Period size: 981 Copynumber: 1.9 Consensus size: 965
8604371 ATTTAAATTT
8604381 AAATCAAAATATTAAAAATATTAAAAATTTTACATAAATTTTAAATTCAATATATATTAAATTAT
1 AAATCAAAATATTAAAAATATTAAAAATTTTACATAAATTTTAAATTCAATATATATTAAATTAT
* *
8604446 AAATTATCTTTCTTTTTTAATTTAATCATAATTGCAAATACATATAGGCTTAATAAACTTTTATT
66 AAATTATCTTTCTTTTTTAATTTAATCATAATTCCAAATACATATAGACTTAATAAACTTTTATT
* *
8604511 TACTGTCAAATAATTTTATTTAATAAATTATATAAATTAAATATTTTTATAACTATTTAAATTCA
131 TAC-GTAAAATAATTTTATTGAATAAATTATATAAATTAAATATTTTTATAACTATTTAAATTCA
*
8604576 AATCAAACTTTATCAAAAATTAAAAATTTTACATAAATTTTGAATTTAAATATATTAAATTATAA
195 AATCAAACTTTATCAAAAATTAAAAATTTTACATAAATTTTGAATTTAAATATATTAAATCATAA
*
8604641 TTTTTCTTTTCTTTTCAAATTTAATCATAGTTTTACATATATATATGATATATATGTGTGTAAAC
260 TTTTTCTTTTCTTTTCAAATTTAATCATACTTTTACATATATATATGATATATATGTGTGTAAAC
* * *
8604706 TTAATAAATTTTAGTTGCTAAAATAAAAATCTCAAAATAAAAATAAAGGACTCATAAAATGCATG
325 TTAATAAATTTTAGTTACTAAAATAAAAATCTCAAAATAAAAATAAAGAACCCATAAAATGCATG
* *
8604771 TGTCATCCTTTAAACAATGTTATTTTATTCATTATTATTAGAATTAAAAATTAAATAATACAATT
390 TGTCATCCTCTAAACAATGTTATTTTATTCATTATTATTAGAATTAAAAATTAAATAACACAATT
** * ** *
8604836 TTTTTATTTGACGATTATGGTTTATTAATTTTGACAAAAATTGGTAAAAATTAGAAAGAATAATA
455 TTTTTATTTGACGATTATGGGATATGAATTTTGACAAAAATTGACAAAAATTAAAAAGAATAATA
** * * * *
8604901 ACCACATCATACTCATGAATATGTAAATTCATTTTATGCATTTATTATTCTTTTTTTTCTTTTTT
520 ACCACATCATACTCATGAATAAATAAATTCATTTTATCCATTTATTATTATTATTTTTCATTTTT
* * * *
8604966 TAGTTTTAAAAATAAGTATGTGATGGTGTTGGATTTTTTTTTTGTTTTTATAATATTATTTCTTT
585 TAGTTTTAAAAATAAGTATGTGATAGTGTTGGACTGTTTTTCTGTTTTTATAATATTATTTCTTT
** *
8605031 TTTTTAGATTTCAATAACGAAAGGAAAATGAGAACACATTTAAATTGGTTTCAACTAAGTAATAG
650 TTTTTAGATTTCAATAACGAAAGGAAAATGAGAACACATTTAAACCGGTTTCAACCAAGTAATAG
* * *
8605096 GTATAGTTCATTATTTTTATTCATATTCTATTTCTTTTTTTTCATATTCTATTTCTTTTTTTTTT
715 ATATAGTTCATTATTTTTATTCATATTCTA----------TTCATA-T-TA-TTCTTATTATTTT
*
8605161 CTTCTATTTGTTTGTTTCTTCCAACATTTTATTTGGTTTTATTTACATTATATGATATATGCATT
767 CCTCTATTTGTTTGTTTCTTCCAACATTTTATTTGGTTTTATTTACATTATATGATATATGCATT
* *
8605226 TAGATTTGATTTAATCTAAAAAAAATTGGTTCATATGTTTATAATATATATATATATAGTTAAAC
832 TAGATTTAATTTAATCTAAAAAAAATTGGCTCATATGTTTATAATATATATATATATAGTTAAAC
8605291 TAGATATTTATTATGCATAAGTATAAGACATTTAAATTATATATACATTCTCAATTTATATATTT
897 TAGATATTTATTATGCATAAGTATAAGACATTTAAATTATATATACATTCTCAATTTATATATTT
8605356 GGTC
962 GGTC
* *
8605360 AAATCAAAAT-CTATAAAATATTAAAAATTTTACATAAATTTTAAATTTAA-ATATATTAAATTA
1 AAATCAAAATATTA-AAAATATTAAAAATTTTACATAAATTTTAAATTCAATATATATTAAATTA
* * *
8605423 TAACTTATCTTTCTTTTTTAATTTAATCATAATTCCAAATATATATAGACTTACTAAACTTTTAT
65 TAAATTATCTTTCTTTTTTAATTTAATCATAATTCCAAATACATATAGACTTAATAAACTTTTAT
* *
8605488 CTTGA-GTAAAATAATTTTATTGAATAAATTATATAAATTTAATATTTTTGGGTAACTATTTAAA
130 -TT-ACGTAAAATAATTTTATTGAATAAATTATATAAATTAAATATTTTT--ATAACTATTTAAA
* **
8605552 TTCATATCAAAC-TTATCAAAAATTAGGAATTTTACATAAATTTTGAATTTAAATATATTAAATC
191 TTCAAATCAAACTTTATCAAAAATTAAAAATTTTACATAAATTTTGAATTTAAATATATTAAATC
* * *
8605616 ATAATTTCTCTTTTTTCTTTTTAAATTTAATCATAACTCTATATATATATATATAT-ATATTTAT
256 ATAATTT-T-TCTTTTCTTTTCAAATTTAATCAT-ACT-T-T-TACATATATATATGATA--TA-
* * * * *
8605680 TTATTTTTGTGTGTGTGAGCTTAATAAATTTTTATTTACTGAAATCAAAATCTCAAAATAAAAAT
312 -TA------TGTGTGTAAACTTAATAAA-TTTTAGTTACTAAAATAAAAATCTCAAAATAAAAAT
* * * *
8605745 AAATAACCCAT-AAA-GGAT-TGCATCATCGTCTAACCAATGTTATTTTATAT-ATTATTATTAG
369 AAAGAACCCATAAAATGCATGTG--TCATCCTCTAAACAATGTTATTTTAT-TCATTATTATTAG
* * *
8605806 AATTATAAATTGAATAACACAATATTTTTTTTTTATTTGACGATTATGGGATATGGATTTTGACA
431 AATTAAAAATTAAATAACAC-A-A---TTTTTTTATTTGACGATTATGGGATATGAATTTTGACA
* * *
8605871 AAAATTGACAAAAATTAAAAAGAATAATAATCGCATCATACTCATGAATAAATAAATTTATTTTA
491 AAAATTGACAAAAATTAAAAAGAATAATAACCACATCATACTCATGAATAAATAAATTCATTTTA
* * * *
8605936 TCCCTTTATTTTTATTATTTTT-ATTTTTTAGTTTTAAAAATAAGTTTGTGATAGTGTTTGACTG
556 TCCATTTATTATTATTATTTTTCATTTTTTAGTTTTAAAAATAAGTATGTGATAGTGTTGGACTG
* * *
8606000 TTTTTCT-TTTTTATAATATTGATTTTAGTTTTCTGTTTTTTGATTTCAATAATGAAAGGAAAAT
621 TTTTTCTGTTTTTATAATATT-A--TT--TCTT-T-TTTTTAGATTTCAATAACGAAAGGAAAAT
** * ** *
8606064 GAGCGCATATTT-GGCCGAGTTTCAACCAGGTAATAGATATAGTTCATTA-TTTT-TT-ATA-T-
679 GAGAACACATTTAAACCG-GTTTCAACCAAGTAATAGATATAGTTCATTATTTTTATTCATATTC
*
8606123 TA-T-ATA-TA-T-TTATTATTTTCCTCTATTTGTTTGTTT-TTTCAGAC-TTGTTATTTGGTTT
743 TATTCATATTATTCTTATTATTTTCCTCTATTTGTTTGTTTCTTCCA-ACATT-TTATTTGGTTT
** * *
8606181 TATTTGTATTATATGATATATGCATTTAGATTTAATTTATTCTAAAATAAATTGGCTCATATGTT
806 TATTTACATTATATGATATATGCATTTAGATTTAATTTAATCTAAAAAAAATTGGCTCATATGTT
8606246 TATATATATATATATATATA
871 TATA-ATATATATATATATA
8606266 TATAGTTATA
Statistics
Matches: 783, Mismatches: 82, Indels: 79
0.83 0.09 0.08
Matches are distributed among these distances:
978 116 0.15
979 103 0.13
980 31 0.04
981 122 0.16
982 18 0.02
983 1 0.00
984 6 0.01
985 12 0.02
986 2 0.00
987 3 0.00
988 3 0.00
992 2 0.00
993 3 0.00
994 71 0.09
995 42 0.05
996 1 0.00
997 13 0.02
998 43 0.05
999 110 0.14
1000 3 0.00
1001 3 0.00
1002 5 0.01
1003 6 0.01
1004 64 0.08
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (965 bp):
AAATCAAAATATTAAAAATATTAAAAATTTTACATAAATTTTAAATTCAATATATATTAAATTAT
AAATTATCTTTCTTTTTTAATTTAATCATAATTCCAAATACATATAGACTTAATAAACTTTTATT
TACGTAAAATAATTTTATTGAATAAATTATATAAATTAAATATTTTTATAACTATTTAAATTCAA
ATCAAACTTTATCAAAAATTAAAAATTTTACATAAATTTTGAATTTAAATATATTAAATCATAAT
TTTTCTTTTCTTTTCAAATTTAATCATACTTTTACATATATATATGATATATATGTGTGTAAACT
TAATAAATTTTAGTTACTAAAATAAAAATCTCAAAATAAAAATAAAGAACCCATAAAATGCATGT
GTCATCCTCTAAACAATGTTATTTTATTCATTATTATTAGAATTAAAAATTAAATAACACAATTT
TTTTATTTGACGATTATGGGATATGAATTTTGACAAAAATTGACAAAAATTAAAAAGAATAATAA
CCACATCATACTCATGAATAAATAAATTCATTTTATCCATTTATTATTATTATTTTTCATTTTTT
AGTTTTAAAAATAAGTATGTGATAGTGTTGGACTGTTTTTCTGTTTTTATAATATTATTTCTTTT
TTTTAGATTTCAATAACGAAAGGAAAATGAGAACACATTTAAACCGGTTTCAACCAAGTAATAGA
TATAGTTCATTATTTTTATTCATATTCTATTCATATTATTCTTATTATTTTCCTCTATTTGTTTG
TTTCTTCCAACATTTTATTTGGTTTTATTTACATTATATGATATATGCATTTAGATTTAATTTAA
TCTAAAAAAAATTGGCTCATATGTTTATAATATATATATATATAGTTAAACTAGATATTTATTAT
GCATAAGTATAAGACATTTAAATTATATATACATTCTCAATTTATATATTTGGTC
Found at i:8606480 original size:3 final size:3
Alignment explanation
Indices: 8606472--8606505 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8606462 AGTTCAATCA
8606472 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8606506 TGATGTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8615094 original size:20 final size:20
Alignment explanation
Indices: 8615042--8615103 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
8615032 ATTTGCATGA
*
8615042 TTATTTACAT-AATTATTAAT
1 TTATTTACATGATTTATT-AT
*
8615062 ATATTTACATGATTTATTAT
1 TTATTTACATGATTTATTAT
*
8615082 TTATTTACATGATTTGTTAT
1 TTATTTACATGATTTATTAT
8615102 TT
1 TT
8615104 GCATGATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (20 bp):
TTATTTACATGATTTATTAT
Found at i:8619178 original size:25 final size:24
Alignment explanation
Indices: 8619149--8619197 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
8619139 GAATGTGGAA
8619149 AAATGAAGAAAA-AAGAATGAAAAAG
1 AAATGAA-AAAAGAA-AATGAAAAAG
8619174 AAATGAAAAAAGGAAAATGAAAAA
1 AAATGAAAAAA-GAAAATGAAAAA
8619198 AAAAAGATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 16 0.73
26 2 0.09
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.08
Consensus pattern (24 bp):
AAATGAAAAAAGAAAATGAAAAAG
Found at i:8619207 original size:14 final size:14
Alignment explanation
Indices: 8619146--8619210 Score: 59
Period size: 14 Copynumber: 4.9 Consensus size: 14
8619136 TTTGAATGTG
8619146 GAAAAATGAAGAAAA
1 GAAAAATGAA-AAAA
*
8619161 -AAGAATG-AAAAA
1 GAAAAATGAAAAAA
8619173 G--AAATGAAAAAA
1 GAAAAATGAAAAAA
*
8619185 GGAAAATGAAAAAA
1 GAAAAATGAAAAAA
8619199 -AAAAGATGAAAA
1 GAAAA-ATGAAAA
8619211 TGCATGTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
11 4 0.10
12 10 0.24
13 4 0.10
14 24 0.57
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (14 bp):
GAAAAATGAAAAAA
Found at i:8620829 original size:44 final size:43
Alignment explanation
Indices: 8620749--8620985 Score: 160
Period size: 44 Copynumber: 5.4 Consensus size: 43
8620739 TAACCTTCAA
8620749 GCATAATCTTTAAGACCTCCG-G-ATGTAATCTT-TAAGACCTCTAG
1 GCATAATCTTTAAGACCT-CGAGCATG--AT-TTGTAAGACCTCTAG
* *
8620793 GTATAATCTTTAAGACCTCTGAGCATGATTTGTAAGACCTCTAA
1 GCATAATCTTTAAGACCTC-GAGCATGATTTGTAAGACCTCTAG
* * * * *
8620837 ACATAATCTTTAAAACTTCGGGACATGATTTTTAAGACCTCTAG
1 GCATAATCTTTAAGACCTCGAG-CATGATTTGTAAGACCTCTAG
* ** * * * *
8620881 ACATAATCTTCGAGATCTCCATGCATGATTTATAAAACCT-TAAG
1 GCATAATCTTTAAGACCTCGA-GCATGATTTGTAAGACCTCT-AG
** * * * * *
8620925 GTGTAGTCTTCAAGACCTCTGA-CAAGATTTGTAAGACCTCCAA
1 GCATAATCTTTAAGACCTC-GAGCATGATTTGTAAGACCTCTAG
*
8620968 GAATAATCTTTAAGACCT
1 GCATAATCTTTAAGACCT
8620986 TTCGGTATAA
Statistics
Matches: 150, Mismatches: 34, Indels: 19
0.74 0.17 0.09
Matches are distributed among these distances:
43 35 0.23
44 109 0.73
45 3 0.02
46 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (43 bp):
GCATAATCTTTAAGACCTCGAGCATGATTTGTAAGACCTCTAG
Found at i:8620844 original size:66 final size:66
Alignment explanation
Indices: 8620774--8621020 Score: 195
Period size: 66 Copynumber: 3.8 Consensus size: 66
8620764 CCTCCGGATG
* *
8620774 TAATCTTTAAGACCTCTAGGTATAATCTTTAAGACCTCTGAGCATGATTTGTAAGACCTCTAAAC
1 TAATCTTTAAAACCTCTAGGTATAATCTTTAAGACCTCTGAGCATGATTTGTAAGACCTCCAAAC
8620839 A
66 A
* * * * * * *
8620840 TAATCTTTAAAACTTC-GGGACATGATTTTTAAGACCTCT-AGACATAATCTTCG--AGATCTCC
1 TAATCTTTAAAACCTCTAGG-TATAATCTTTAAGACCTCTGAG-CATGAT-TT-GTAAGACCTCC
**
8620901 ATGCA
62 AAACA
* * * * *
8620906 TGAT-TTATAAAACCT-TAAGGTGTAGTCTTCAAGACCTCTGA-CAAGATTTGTAAGACCTCCAA
1 TAATCTT-TAAAACCTCT-AGGTATAATCTTTAAGACCTCTGAGCATGATTTGTAAGACCTCCAA
8620968 GA-A
64 -ACA
* * * *
8620971 TAATCTTTAAGACCTTTCGGTATAATCTCTAAGACCTCTGAGCATGATTT
1 TAATCTTTAAAACCTCTAGGTATAATCTTTAAGACCTCTGAGCATGATTT
8621021 ATAAAACTTT
Statistics
Matches: 134, Mismatches: 33, Indels: 28
0.69 0.17 0.14
Matches are distributed among these distances:
63 1 0.01
64 2 0.01
65 48 0.36
66 77 0.57
67 5 0.04
68 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (66 bp):
TAATCTTTAAAACCTCTAGGTATAATCTTTAAGACCTCTGAGCATGATTTGTAAGACCTCCAAAC
A
Found at i:8620883 original size:22 final size:22
Alignment explanation
Indices: 8620750--8620890 Score: 124
Period size: 22 Copynumber: 6.4 Consensus size: 22
8620740 AACCTTCAAG
**
8620750 CATAATCTTTAAGACCTCCGGA
1 CATAATCTTTAAGACCTCTAGA
** *
8620772 TGTAATCTTTAAGACCTCTAGG
1 CATAATCTTTAAGACCTCTAGA
*
8620794 TATAATCTTTAAGACCTCT-GA
1 CATAATCTTTAAGACCTCTAGA
* *
8620815 GCATGAT-TTGTAAGACCTCTAAA
1 -CATAATCTT-TAAGACCTCTAGA
* * **
8620838 CATAATCTTTAAAACTTCGGGA
1 CATAATCTTTAAGACCTCTAGA
* *
8620860 CATGATTTTTAAGACCTCTAGA
1 CATAATCTTTAAGACCTCTAGA
8620882 CATAATCTT
1 CATAATCTT
8620891 CGAGATCTCC
Statistics
Matches: 91, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
21 3 0.03
22 85 0.93
23 3 0.03
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (22 bp):
CATAATCTTTAAGACCTCTAGA
Found at i:8623390 original size:36 final size:36
Alignment explanation
Indices: 8623309--8623390 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
8623299 ATTTTTTTCT
* **
8623309 TTTATGAT-ATTTTTTATTTGCTTGATTATTAATATA
1 TTTAT-ATGATTTGTTATTTGAATGATTATTAATATA
**
8623345 TTTGCATGATTTGTTATTTGAATGATGTATTAA-ATA
1 TTTATATGATTTGTTATTTGAATGAT-TATTAATATA
8623381 TTTATATGAT
1 TTTATATGAT
8623391 ATTTTTACAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
35 2 0.05
36 29 0.78
37 6 0.16
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (36 bp):
TTTATATGATTTGTTATTTGAATGATTATTAATATA
Found at i:8628291 original size:83 final size:83
Alignment explanation
Indices: 8628152--8628324 Score: 276
Period size: 83 Copynumber: 2.1 Consensus size: 83
8628142 AAAATCAGTT
* ** *
8628152 TTTGATGAGTGGATTCGAGTAAGTTATTTAACATTAAACTATTGCTTAACTTACTTATTTTATGT
1 TTTGATTAGTGGATTCGAGTAAGTTATTTAACATTAAACTATCACCTAACTTACTTATTTTATGT
8628217 TCTTCTCTATTCATTATA
66 TCTTCTCTATTCATTATA
*
8628235 TTTGATTAGTAGG-TTCGAGTAAGTTATTTAAGATTAAACTATCACCTAACTTACTTATTTTATG
1 TTTGATTAGT-GGATTCGAGTAAGTTATTTAACATTAAACTATCACCTAACTTACTTATTTTATG
*
8628299 TTCTTCTTTATTCATTATA
65 TTCTTCTCTATTCATTATA
8628318 TTTGATT
1 TTTGATT
8628325 CATATTTATT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
83 81 0.98
84 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (83 bp):
TTTGATTAGTGGATTCGAGTAAGTTATTTAACATTAAACTATCACCTAACTTACTTATTTTATGT
TCTTCTCTATTCATTATA
Found at i:8633586 original size:192 final size:192
Alignment explanation
Indices: 8633259--8633656 Score: 760
Period size: 192 Copynumber: 2.1 Consensus size: 192
8633249 TATGGTTTAA
*
8633259 AATATATTAATTACTACGTTTATTTTAAATAAATACAATAATTGAGTGTAGTAATTTTTTTTACA
1 AATATATTAATTACTACGTTTATTTTAAATAAATACAATAATTGAGTGTAGCAATTTTTTTTACA
*
8633324 AATATTGATTATTGTATTTTTTTAAAAAATAAACACAATATTTGAAAAAAAATTTAAAAGCACTA
66 AATATTGATTATTGTATTTTTTAAAAAAATAAACACAATATTTGAAAAAAAATTTAAAAGCACTA
8633389 TTACTACGTTTCTTTAAAGACACTATTATTGTGTTTTTTCTCGTAGAATTAATAAAACATGT
131 TTACTACGTTTCTTTAAAGACACTATTATTGTGTTTTTTCTCGTAGAATTAATAAAACATGT
8633451 AATATATTAATTACTACGTTTATTTTAAATAAATACAATAATTGAGTGTAGCAATTTTTTTTACA
1 AATATATTAATTACTACGTTTATTTTAAATAAATACAATAATTGAGTGTAGCAATTTTTTTTACA
8633516 AATATTGATTATTGTATTTTTTAAAAAAATAAACACAATATTTGAAAAAAAATTTAAAAGCACTA
66 AATATTGATTATTGTATTTTTTAAAAAAATAAACACAATATTTGAAAAAAAATTTAAAAGCACTA
8633581 TTACTACGTTTCTTTAAAGACACTATTATTGTGTTTTTTCTCGTAGAATTAATAAAACATGT
131 TTACTACGTTTCTTTAAAGACACTATTATTGTGTTTTTTCTCGTAGAATTAATAAAACATGT
*
8633643 AATATGATCAATTA
1 AATAT-ATTAATTA
8633657 TTGCCTTTTT
Statistics
Matches: 202, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
192 195 0.97
193 7 0.03
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (192 bp):
AATATATTAATTACTACGTTTATTTTAAATAAATACAATAATTGAGTGTAGCAATTTTTTTTACA
AATATTGATTATTGTATTTTTTAAAAAAATAAACACAATATTTGAAAAAAAATTTAAAAGCACTA
TTACTACGTTTCTTTAAAGACACTATTATTGTGTTTTTTCTCGTAGAATTAATAAAACATGT
Found at i:8641839 original size:25 final size:25
Alignment explanation
Indices: 8641809--8641858 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
8641799 ACTTGGATGA
*
8641809 AAAATAGTTTGC-CCCTGGATGCTAT
1 AAAATAGTTTGCACCC-GGATACTAT
8641834 AAAATAGTTTGCACCCGGATACTAT
1 AAAATAGTTTGCACCCGGATACTAT
8641859 CATAAGGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (25 bp):
AAAATAGTTTGCACCCGGATACTAT
Found at i:8644190 original size:12 final size:12
Alignment explanation
Indices: 8644173--8644214 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
8644163 GGTTAATCAT
* *
8644173 TTTTTTTTTTGC
1 TTTTTTGTTTGA
8644185 TTTTTTGTTTGA
1 TTTTTTGTTTGA
*
8644197 TTTTGTGTTT-A
1 TTTTTTGTTTGA
8644208 TTTTTTG
1 TTTTTTG
8644215 AAGATTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.05, C:0.02, G:0.14, T:0.79
Consensus pattern (12 bp):
TTTTTTGTTTGA
Found at i:8652340 original size:2 final size:2
Alignment explanation
Indices: 8652333--8652359 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8652323 GAGTGTTTAC
8652333 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8652360 TTAATCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8656340 original size:39 final size:40
Alignment explanation
Indices: 8656291--8656371 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
8656281 AGTCATCGAA
*
8656291 TCGTTTTTGGTGTTTGAAG-TTTGAGTCACGTCGTGTCAT
1 TCGTTTTTGGTGTTTGAAGTTTTGAGTCACGTCGTGCCAT
8656330 TCGTTTTTGGTGTTTGAAGTTTTGAGTCACGTCGTGCCAT
1 TCGTTTTTGGTGTTTGAAGTTTTGAGTCACGTCGTGCCAT
8656370 TC
1 TC
8656372 TAGTTGAGTG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 19 0.47
40 21 0.52
ACGTcount: A:0.12, C:0.15, G:0.27, T:0.46
Consensus pattern (40 bp):
TCGTTTTTGGTGTTTGAAGTTTTGAGTCACGTCGTGCCAT
Found at i:8656500 original size:15 final size:16
Alignment explanation
Indices: 8656476--8656507 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
8656466 TTAATTTTAG
8656476 AAAAAGATAAAAAAAT
1 AAAAAGATAAAAAAAT
8656492 AAAAA-ATAAAAAAAT
1 AAAAAGATAAAAAAAT
8656507 A
1 A
8656508 TTTTTTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAAGATAAAAAAAT
Found at i:8656596 original size:26 final size:24
Alignment explanation
Indices: 8656536--8656599 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 24
8656526 TTAATTATCT
*
8656536 AATGATGAAATTTATAAAAATTTTA
1 AATGA-GAAATTTTTAAAAATTTTA
*
8656561 AATGATAAATTTTTATAAAATTCTTA
1 AATGAGAAATTTTTA-AAAATT-TTA
**
8656587 GGTGAGAAATTTT
1 AATGAGAAATTTT
8656600 ATTTAAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 8 0.25
25 11 0.34
26 13 0.41
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (24 bp):
AATGAGAAATTTTTAAAAATTTTA
Found at i:8659425 original size:24 final size:25
Alignment explanation
Indices: 8659398--8659455 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
8659388 AAGAAATCTC
*
8659398 CTAACT-TTGCATT-AATAAGTATTA
1 CTAACTATTG-ATTAAAAAAGTATTA
8659422 CTAACTATTGATTAAAAAAAAGTATTA
1 CTAACTATTGATT--AAAAAAGTATTA
8659449 CTAACTA
1 CTAACTA
8659456 GTTTATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 9 0.31
25 3 0.10
27 17 0.59
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (25 bp):
CTAACTATTGATTAAAAAAGTATTA
Found at i:8673603 original size:144 final size:142
Alignment explanation
Indices: 8673212--8673752 Score: 522
Period size: 144 Copynumber: 3.8 Consensus size: 142
8673202 ATCCTAAAAG
* * * * *
8673212 ACCAAAAATCATGAAATATTATAAAATTGAGATCTGAAAAATTTCATGAAAATAC-GAACTTGGA
1 ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATTTCATGAAAAT-CTGAGCTTGAA
* * * * *
8673276 AATG-CTAAATTACT-AAAATACCCTTAATGGGTATTTTGATAATTTCACACCTCTCAGGGTACT
65 AAGGTC-AAATTA-TGAAAATACCCTTAAAGGGTATTTTGATAATTTCACACTTTTTA--GTACT
* *
8673339 GCTATGATTTCAAATGC
126 GCTGTGATTTCAAATAC
**** * * * *
8673356 ACCAAAACTTTTGAAATATTATAAAATTAAGATCTGAAAAGTTTCATGAAAAT-TTAGCTCGAAA
1 ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATTTCATGAAAATCTGAGCTTGAAA
* * *
8673420 AGGTCAAATTATGAAAATACCCTTATAGGATTATTTTGATAATTTCACACTTTTTATGCTACT-A
66 AGGTCAAATTATGAAAATACCCTTAAAGG-GTATTTTGATAATTTCACACTTTTTA-G-TACTGC
8673484 TGTGATTTCAAATAC
128 TGTGATTTCAAATAC
* * **
8673499 ACCAAAAAACATGAAATATTATGAAATTAAGATCTAAAAAATATCATGAAAATCTGAGCTTGGGA
1 ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATTTCATGAAAATCTGAGCTTGAAA
* * * *
8673564 AGGTCAACTTATGAAAATATCTTTATAAGGGTATTTTGATAATTTCACA-TTTCTTGGAGTATTG
66 AGGTCAAATTATGAAAATACCCTTA-AAGGGTATTTTGATAATTTCACACTTT-TT--AGTACTG
*
8673628 CTGTGATTTTAAATAC
127 CTGTGATTTCAAATAC
* * * * * *
8673644 A-AAAAGAAATATGAAATATTATGAAATTAAGATTTAAAAAGTTTCATGAAGATCTGAGCTTGAG
1 ACCAAA-AAACATGAAATATTATAAAATTAAGATCTAAAAAATTTCATGAAAATCTGAGCTTGA-
* * * *
8673708 AAGGGT-AAATTACGAAAATACCTTTAAAGGGTATTTTGGTAATTT
64 AAAGGTCAAATTATGAAAATACCCTTAAAGGGTATTTTGATAATTT
8673753 GTACTTCTAA
Statistics
Matches: 331, Mismatches: 53, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
142 1 0.00
143 90 0.27
144 148 0.45
145 87 0.26
146 5 0.02
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (142 bp):
ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATTTCATGAAAATCTGAGCTTGAAA
AGGTCAAATTATGAAAATACCCTTAAAGGGTATTTTGATAATTTCACACTTTTTAGTACTGCTGT
GATTTCAAATAC
Found at i:8673745 original size:288 final size:287
Alignment explanation
Indices: 8673212--8673752 Score: 646
Period size: 288 Copynumber: 1.9 Consensus size: 287
8673202 ATCCTAAAAG
* * * *
8673212 ACCAAAAATCATGAAATATTATAAAATTGAGATCTGAAAAATTTCATGAAAATACGAACTTGGAA
1 ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATATCATGAAAATACGAACTTGGAA
* *
8673277 ATGCTAAATTACTAAAATACCCTTAATGGGTATTTTGATAATTTCACACCTCTCAGGGTACTGCT
66 AGGCTAAATTACTAAAATACCCTTAAAGGGTATTTTGATAATTTCACACCTCTCAGGGTACTGCT
* * ** * *
8673342 ATGATTTCAAATGCACCAAAACTTTTGAAATATTATAAAATTAAGATCTGAAAAGTTTCATGAAA
131 ATGATTTCAAATACACAAAAAAATATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAAA
* * * *
8673407 ATTTAGCTCGAAAAGGTCAAATTATGAAAATACCCTTATAGGATTATTTTGATAATTTCACACTT
196 ATTGAGCTCGAAAAGGTCAAATTACGAAAATACCCTTAAAGGAGTATTTTGATAATTTCACACTT
8673472 TTTATGCTACTATGTGATTTCAAATAC
261 TTTATGCTACTATGTGATTTCAAATAC
* * *
8673499 ACCAAAAAACATGAAATATTATGAAATTAAGATCTAAAAAATATCATGAAAAT-CTGAGCTTGGG
1 ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATATCATGAAAATAC-GAACTTGGA
* * * ** *
8673563 AAGG-TCAACTTA-TGAAAATATCTTTATAAGGGTATTTTGATAATTTCACATTTCT-TGGAGTA
65 AAGGCT-AAATTACT-AAAATACCCTTA-AAGGGTATTTTGATAATTTCACACCTCTCAGG-GTA
* * * * *
8673625 TTGCTGTGATTTTAAATACA-AAAAGAAATATGAAATATTATGAAATTAAGATTTAAAAAGTTTC
126 CTGCTATGATTTCAAATACACAAAA-AAATATGAAATATTATAAAATTAAGATCTAAAAAGTTTC
* * * * *
8673689 ATGAAGATCTGAGCTTGAGAAGGGT-AAATTACGAAAATACCTTTAAAGG-GTATTTTGGTAATT
190 ATGAAAAT-TGAGCTCGA-AAAGGTCAAATTACGAAAATACCCTTAAAGGAGTATTTTGATAATT
8673752 T
253 T
8673753 GTACTTCTAA
Statistics
Matches: 211, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
286 3 0.01
287 78 0.37
288 97 0.46
289 28 0.13
290 5 0.02
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (287 bp):
ACCAAAAAACATGAAATATTATAAAATTAAGATCTAAAAAATATCATGAAAATACGAACTTGGAA
AGGCTAAATTACTAAAATACCCTTAAAGGGTATTTTGATAATTTCACACCTCTCAGGGTACTGCT
ATGATTTCAAATACACAAAAAAATATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAAA
ATTGAGCTCGAAAAGGTCAAATTACGAAAATACCCTTAAAGGAGTATTTTGATAATTTCACACTT
TTTATGCTACTATGTGATTTCAAATAC
Found at i:8686086 original size:3 final size:3
Alignment explanation
Indices: 8686078--8686146 Score: 93
Period size: 3 Copynumber: 23.0 Consensus size: 3
8686068 TGTTTCCCTT
* * * * *
8686078 TTA TTA TTA TTG CTA TTA TTG TTA TTG TTA TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8686126 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
8686147 GAAAGAATTA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.28, C:0.01, G:0.06, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:8687225 original size:35 final size:35
Alignment explanation
Indices: 8687179--8687248 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
8687169 TTTTAACACT
8687179 TTGTCAATTTTTAGAAG-ACTTTTCTTGCCTAGAGA
1 TTGTCAATTTTTAGAAGTA-TTTTCTTGCCTAGAGA
8687214 TTGTCAATTTTTAGAAGTATTTTCTTGCCTAGAGA
1 TTGTCAATTTTTAGAAGTATTTTCTTGCCTAGAGA
8687249 ATTCTCAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (35 bp):
TTGTCAATTTTTAGAAGTATTTTCTTGCCTAGAGA
Found at i:8689125 original size:11 final size:11
Alignment explanation
Indices: 8689103--8689136 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
8689093 TTCGATCTTC
8689103 AAAGAGAAAAAA
1 AAAGA-AAAAAA
8689115 AAAGAAAAAAA
1 AAAGAAAAAAA
8689126 AAAGAAAAAAA
1 AAAGAAAAAAA
8689137 GAGGCTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:8689539 original size:13 final size:13
Alignment explanation
Indices: 8689521--8689551 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8689511 GACATCCTTC
*
8689521 CTTTTTTTTTTTT
1 CTTTTTTGTTTTT
8689534 CTTTTTTGTTTTT
1 CTTTTTTGTTTTT
8689547 CTTTT
1 CTTTT
8689552 CATTTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (13 bp):
CTTTTTTGTTTTT
Found at i:8689551 original size:18 final size:19
Alignment explanation
Indices: 8689524--8689559 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8689514 ATCCTTCCTT
*
8689524 TTTTTTTTTTC-TTTTTTG
1 TTTTTCTTTTCATTTTTTG
8689542 TTTTTCTTTTCATTTTTT
1 TTTTTCTTTTCATTTTTT
8689560 CAGATGTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.03, C:0.08, G:0.03, T:0.86
Consensus pattern (19 bp):
TTTTTCTTTTCATTTTTTG
Found at i:8698740 original size:30 final size:30
Alignment explanation
Indices: 8698704--8698764 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8698694 TCTTTGGTTG
8698704 CAATGATTCCCTCTCTTTAAAAATATAAAT
1 CAATGATTCCCTCTCTTTAAAAATATAAAT
*
8698734 CAATGATTCCTTCTCTTTAAAAATATAAAT
1 CAATGATTCCCTCTCTTTAAAAATATAAAT
8698764 C
1 C
8698765 TAATTTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (30 bp):
CAATGATTCCCTCTCTTTAAAAATATAAAT
Found at i:8699300 original size:36 final size:31
Alignment explanation
Indices: 8699231--8699291 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
8699221 CGTGCAATGC
8699231 AATAAATAAAATATTATTTTATTTAAAGTTT
1 AATAAATAAAATATTATTTTATTTAAAGTTT
8699262 AATAAATAAAATATTATTTTATTTAAAGTT
1 AATAAATAAAATATTATTTTATTTAAAGTT
8699292 AATTTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (31 bp):
AATAAATAAAATATTATTTTATTTAAAGTTT
Found at i:8704585 original size:31 final size:31
Alignment explanation
Indices: 8704548--8704607 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
8704538 GCGGTATAAA
*
8704548 AAATAAAATATTATTTTATTTAAAGTTTAGT
1 AAATAAAATATTATTTTATTTAAAATTTAGT
*
8704579 AAATAAAATGTTATTTTATTTAAAATTTA
1 AAATAAAATATTATTTTATTTAAAATTTA
8704608 ATTTTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (31 bp):
AAATAAAATATTATTTTATTTAAAATTTAGT
Found at i:8708240 original size:21 final size:21
Alignment explanation
Indices: 8708184--8708246 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
8708174 TCTATAAATC
* *
8708184 AAAATAAAAAAAAAAAGTTGA
1 AAAAAAAAAAAAAAAAGTGGA
* *
8708205 AAAAAATAATAAAAAAG-GGA
1 AAAAAAAAAAAAAAAAGTGGA
*
8708225 AAAAAAAAAAAGAAAAAATGGA
1 AAAAAAAAAAA-AAAAAGTGGA
8708247 GAGTAACATG
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
20 11 0.33
21 19 0.58
22 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.10
Consensus pattern (21 bp):
AAAAAAAAAAAAAAAAGTGGA
Found at i:8710600 original size:2 final size:2
Alignment explanation
Indices: 8710593--8710617 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8710583 TCAAAACTTG
8710593 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8710618 CATTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8718356 original size:90 final size:90
Alignment explanation
Indices: 8718240--8718590 Score: 274
Period size: 90 Copynumber: 3.9 Consensus size: 90
8718230 AGGATTACGC
* *
8718240 TTTTAT-TTTAAAAAAGCAATCTTTGTTGAGAA-TAAAGAATTCTAAAAAATTAA-ATTTTTTGC
1 TTTTATCTTTAAAAAAGCAATTTTTGTTGA-AAGTAAAGAATTATAAAAAA-TAATATTTTTT-C
* *
8718302 ATAATATATTTATATTAAGGACTAC-CT
63 ATAATATATTTTTAATAAGGACTACACT
* * * *
8718329 TTTTATCTTTAAAAAAGTAATTTTTGTTGAAAGTAAA-AATTTTTGAAAAATAATTATTTTTTAA
1 TTTTATCTTTAAAAAAGCAATTTTTGTTGAAAGTAAAGAA-TTATAAAAAATAA-TATTTTTTCA
* * * *
8718393 TAATATATTTTTAACAAGAATTACATTT
64 TAATATATTTTTAATAAGGACTACA-CT
*
8718421 TTTTATC-TT-AAAATGCAATTTTTGTTGAAAGTAAAGAATTATAAAAAA-AATTATTTTTTTCA
1 TTTTATCTTTAAAAAAGCAATTTTTGTTGAAAGTAAAGAATTATAAAAAATAA-TA-TTTTTTCA
* * ***
8718483 TAATCTATTTTTAATAAGGATTATGTT
64 TAATATATTTTTAATAAGGACTACACT
* * * * * ** *
8718510 TTTTAT-TTTAAAAATGCAGTATTTGTAGAAACTATAA-AACCAAAAGAAAATTACA-ATTTTTT
1 TTTTATCTTTAAAAAAGCAATTTTTGTTGAAAGTA-AAGAATTATAA-AAAA-TA-ATATTTTTT
*
8718572 CATAATATATTTTCAATAA
62 CATAATATATTTTTAATAA
8718591 AAATTACATT
Statistics
Matches: 216, Mismatches: 30, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
89 28 0.13
90 137 0.63
91 40 0.19
92 9 0.04
93 1 0.00
94 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (90 bp):
TTTTATCTTTAAAAAAGCAATTTTTGTTGAAAGTAAAGAATTATAAAAAATAATATTTTTTCATA
ATATATTTTTAATAAGGACTACACT
Found at i:8722005 original size:9 final size:9
Alignment explanation
Indices: 8721991--8722033 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
8721981 TGGAGAGGAG
8721991 GATGATGAC
1 GATGATGAC
8722000 GATGATGAC
1 GATGATGAC
**
8722009 GATGACAAC
1 GATGATGAC
*
8722018 GACGATGAC
1 GATGATGAC
8722027 GATGATG
1 GATGATG
8722034 GTGAGGAGGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.19
Consensus pattern (9 bp):
GATGATGAC
Found at i:8731570 original size:22 final size:20
Alignment explanation
Indices: 8731520--8731612 Score: 54
Period size: 18 Copynumber: 4.7 Consensus size: 20
8731510 AAATTTATTT
8731520 AATAAAAAAATAAATACAAA
1 AATAAAAAAATAAATACAAA
* **
8731540 AATTGAAAAAGATAAATGGAGAA
1 AA-T-AAAAAAATAAATACA-AA
8731563 AATAAAAACAA-AAA-ACAAA
1 AATAAAAA-AATAAATACAAA
* *
8731582 AA-AAAATGAA-AAAT-GAAA
1 AATAAAA-AAATAAATACAAA
8731600 AAT-AAAAAATAAA
1 AATAAAAAAATAAA
8731613 AAATAAAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 18
0.67 0.11 0.22
Matches are distributed among these distances:
17 2 0.04
18 20 0.36
19 4 0.07
20 3 0.05
21 9 0.16
22 14 0.25
23 4 0.07
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.13
Consensus pattern (20 bp):
AATAAAAAAATAAATACAAA
Found at i:8731593 original size:7 final size:7
Alignment explanation
Indices: 8731561--8731622 Score: 70
Period size: 7 Copynumber: 8.6 Consensus size: 7
8731551 ATAAATGGAG
8731561 AAAATAA
1 AAAATAA
*
8731568 AAACAAAA
1 AAA-ATAA
*
8731576 AACAAAAA
1 AA-AATAA
*
8731584 AAAATGA
1 AAAATAA
*
8731591 AAAATGA
1 AAAATAA
8731598 AAAATAA
1 AAAATAA
8731605 AAAATAA
1 AAAATAA
8731612 AAAATAA
1 AAAATAA
8731619 AAAA
1 AAAA
8731623 AATCCATAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
7 37 0.76
8 11 0.22
9 1 0.02
ACGTcount: A:0.84, C:0.03, G:0.03, T:0.10
Consensus pattern (7 bp):
AAAATAA
Found at i:8732200 original size:17 final size:18
Alignment explanation
Indices: 8732180--8732220 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
8732170 AATTAAAATT
*
8732180 AAAAATA-AAAAAACTAA
1 AAAAATAGAAAAAACAAA
*
8732197 AAAAA-AGCAAAAACAAA
1 AAAAATAGAAAAAACAAA
8732214 AAAAATA
1 AAAAATA
8732221 TATATCAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 18 0.90
18 1 0.05
ACGTcount: A:0.83, C:0.07, G:0.02, T:0.07
Consensus pattern (18 bp):
AAAAATAGAAAAAACAAA
Found at i:8733148 original size:22 final size:20
Alignment explanation
Indices: 8733110--8733161 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
8733100 AACATGTGAC
* *
8733110 AAAAAATGAATTTAAAATATA
1 AAAAAATGAA-TTAAAAAAGA
*
8733131 AAAAATATGTATTAAAAAAGA
1 AAAAA-ATGAATTAAAAAAGA
8733152 AAAAAA-GAAT
1 AAAAAATGAAT
8733162 AACAATTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.12
20 1 0.04
21 18 0.69
22 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAAAATGAATTAAAAAAGA
Found at i:8738666 original size:15 final size:15
Alignment explanation
Indices: 8738630--8738660 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8738620 AAGAAAATTC
8738630 AATAAAACAAAAAAA
1 AATAAAACAAAAAAA
8738645 AATAAAACAAAAAAA
1 AATAAAACAAAAAAA
8738660 A
1 A
8738661 GAAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.87, C:0.06, G:0.00, T:0.06
Consensus pattern (15 bp):
AATAAAACAAAAAAA
Found at i:8738879 original size:27 final size:27
Alignment explanation
Indices: 8738849--8738939 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
8738839 ATTTTTAAGG
8738849 AAAATTGATACTTTCAACTTTTCCTTA
1 AAAATTGATACTTTCAACTTTTCCTTA
** * ***
8738876 AAAATAT-ATTTTTTTAAGACTTATTTTCAAGA
1 AAAAT-TGA-TACTTTCA-AC---TTTTCCTTA
8738908 AAAATTGATACTTTCAACTTTTCCTTA
1 AAAATTGATACTTTCAACTTTTCCTTA
8738935 AAAAT
1 AAAAT
8738940 ATATTTTTTG
Statistics
Matches: 45, Mismatches: 12, Indels: 14
0.63 0.17 0.20
Matches are distributed among these distances:
27 17 0.38
28 6 0.13
29 2 0.04
30 2 0.04
31 6 0.13
32 12 0.27
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.44
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTCCTTA
Found at i:8738938 original size:117 final size:117
Alignment explanation
Indices: 8738729--8738952 Score: 312
Period size: 117 Copynumber: 1.9 Consensus size: 117
8738719 GCTTTCGTAC
*
8738729 AAGGAAAATTGATACCTTCAACTTTTCTCTAAAAAACCCTTTTTAAAATATTATTTTCAAAGAAA
1 AAGGAAAATTGATACCTTCAACTTTTCTCTAAAAAAACCTTTTTAAAATATTATTTTCAAAGAAA
8738794 ATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTAGAAAACTCATTTTT
66 ATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTAGAAAACTCATTTTT
* ** * *
8738845 AAGGAAAATTGATACTTTCAACTTTTC-CTTAAAAATATATTTTTTTAAGA-CTTATTTTC-AAG
1 AAGGAAAATTGATACCTTCAACTTTTCTC-TAAAAA-A-ACCTTTTTAAAATATTATTTTCAAAG
* *
8738907 AAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAAA
63 -AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTAGAAA
8738953 TTTTATTTAA
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
115 1 0.01
116 35 0.37
117 42 0.44
118 17 0.18
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (117 bp):
AAGGAAAATTGATACCTTCAACTTTTCTCTAAAAAAACCTTTTTAAAATATTATTTTCAAAGAAA
ATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTAGAAAACTCATTTTT
Found at i:8738959 original size:59 final size:59
Alignment explanation
Indices: 8738728--8738960 Score: 269
Period size: 58 Copynumber: 4.0 Consensus size: 59
8738718 TGCTTTCGTA
* * *** * *
8738728 CAAGGAAAATTGATACCTTCAACTTTT-CTCTAAAAA-ACCCTTTTTAAAATATTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCT-TAAAAATATATTTTTTGAAATCTTATTTT
* * * *
8738786 CAA-AGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTAGAAAACTCATTTT
1 CAAGA-AAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAAATCTTATTTT
* * *
8738844 TAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTTAAGA-CTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAA-ATCTTATTTT
*
8738903 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAAATTTTATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAAATCTTATTT
8738961 AAAAATAAAA
Statistics
Matches: 148, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
58 78 0.53
59 69 0.47
60 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAAATCTTATTTT
Found at i:8739035 original size:25 final size:25
Alignment explanation
Indices: 8738963--8739035 Score: 60
Period size: 25 Copynumber: 3.0 Consensus size: 25
8738953 TTTTATTTAA
*
8738963 AAATAAAAAATAA-AATAAAATAAG
1 AAATAAATAATAATAATAAAATAAG
* ** * *
8738987 AAAT-ACTAAATAATTCTAATATAAT
1 AAATAAAT-AATAATAATAAAATAAG
*
8739012 CAATAAATAATAATAATAAAATAA
1 AAATAAATAATAATAATAAAATAA
8739036 ATTAAAAAAA
Statistics
Matches: 35, Mismatches: 11, Indels: 5
0.69 0.22 0.10
Matches are distributed among these distances:
23 1 0.03
24 9 0.26
25 23 0.66
26 2 0.06
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.26
Consensus pattern (25 bp):
AAATAAATAATAATAATAAAATAAG
Found at i:8739569 original size:34 final size:33
Alignment explanation
Indices: 8739531--8739598 Score: 84
Period size: 36 Copynumber: 2.0 Consensus size: 33
8739521 AATTCAATCG
*
8739531 AAAT-CTGAAAATTTTCCAGAAATTTTTAGAAAAA
1 AAATCCTGAAAATTCTCCA-AAATTTTTA-AAAAA
*
8739565 AAATCGCTTAAAATTCTCCAAAATTTTTAAAAAA
1 AAATC-CTGAAAATTCTCCAAAATTTTTAAAAAA
8739599 TTCTTGAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 9 0.30
35 9 0.30
36 12 0.40
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (33 bp):
AAATCCTGAAAATTCTCCAAAATTTTTAAAAAA
Found at i:8739902 original size:22 final size:22
Alignment explanation
Indices: 8739876--8739985 Score: 67
Period size: 20 Copynumber: 5.3 Consensus size: 22
8739866 GAAAAAGAAA
8739876 AAATAAATATAATATAATAGAT
1 AAATAAATATAATATAATAGAT
* *
8739898 AAAT-AATA-AAAAT-ATATAT
1 AAATAAATATAATATAATAGAT
* *
8739917 -AAT-AATAT-ATGTTAAGAGAT
1 AAATAAATATAAT-ATAATAGAT
* *
8739937 AAATAAATAT-ATAT-GTATAT
1 AAATAAATATAATATAATAGAT
*
8739957 TAATAAATAATAATAGTAATA-AT
1 AAATAAAT-ATAATA-TAATAGAT
8739980 AAATAA
1 AAATAA
8739986 TAAAAATTTA
Statistics
Matches: 66, Mismatches: 13, Indels: 17
0.69 0.14 0.18
Matches are distributed among these distances:
18 8 0.12
19 6 0.09
20 18 0.27
21 10 0.15
22 14 0.21
23 8 0.12
24 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (22 bp):
AAATAAATATAATATAATAGAT
Found at i:8740259 original size:45 final size:41
Alignment explanation
Indices: 8740209--8740547 Score: 175
Period size: 45 Copynumber: 7.9 Consensus size: 41
8740199 AAATTTGATT
*
8740209 AAAGCTCCTCTAAGCAGAGGCTCAACGACTTTAAAAAACATAAA
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTT--AAAA-ATAAA
* * ** *
8740253 CAAAGCTCTTCTAATTAGAGGCTCAATAACTTTGAAAAT-AA
1 -AAAGCTCCTCTAATCAGAGGCTCAACGACTTTAAAAATAAA
* * * * * *
8740294 ATAGCTCTTCTAATCAAAGGCTCAATGATTTTTGAAAAGT-AA
1 AAAGCTCCTCTAATCAGAGGCTCAACGA-CTTT-AAAAATAAA
** * *
8740336 ATTGCTCCTCTAATCAGAGGCTCGACGACTTTGAAAGATAAA
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTT-AAAAATAAA
* *
8740378 TAAAGCTCCTCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAA
1 -AAAGCTCCTCTAATCAGAGGCTCAACGAC-TTT-AAAA-ATAAA
* * * *
8740423 CAAATCTCCTCTAAAT-ATAGGCTTAACAACTTTTAAAAAT-AA
1 -AAAGCTCCTCT-AATCAGAGGCTCAACGAC-TTTAAAAATAAA
* * ** * * *
8740465 GAGGCTTTTCTAATCAGAGGGTTAACGACTTTTGGAAAGATAAA
1 AAAGCTCCTCTAATCAGAGGCTCAACGAC-TTT--AAAAATAAA
* * *
8740509 CAAAGCTCTTCTAAAT-AGAGGCTTAACAACTTTTAAAAA
1 -AAAGCTCCTCT-AATCAGAGGCTCAACGAC-TTTAAAAA
8740548 ATAGATTGCT
Statistics
Matches: 234, Mismatches: 47, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
40 27 0.12
41 34 0.15
42 35 0.15
43 38 0.16
44 13 0.06
45 82 0.35
46 5 0.02
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.27
Consensus pattern (41 bp):
AAAGCTCCTCTAATCAGAGGCTCAACGACTTTAAAAATAAA
Found at i:8740348 original size:42 final size:40
Alignment explanation
Indices: 8740256--8740400 Score: 146
Period size: 42 Copynumber: 3.5 Consensus size: 40
8740246 ACATAAACAA
*
8740256 AGCTCTTCTAATTAGAGGCTCAATAACTTTGAAAATAAAT
1 AGCTCTTCTAATCAGAGGCTCAATAACTTTGAAAATAAAT
* **
8740296 AGCTCTTCTAATCAAAGGCTCAATGATTTTTGAAAAGTAAAT
1 AGCTCTTCTAATCAGAGGCTCAAT-AACTTTGAAAA-TAAAT
* * * **
8740338 TGCTCCTCTAATCAGAGGCTCGACGACTTTGAAAGATAAAT
1 AGCTCTTCTAATCAGAGGCTCAATAACTTTGAAA-ATAAAT
* *
8740379 AAAGCTCCTCTAAACAGAGGCT
1 --AGCTCTTCTAATCAGAGGCT
8740401 TAACGACTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
40 22 0.26
41 21 0.24
42 25 0.29
43 18 0.21
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (40 bp):
AGCTCTTCTAATCAGAGGCTCAATAACTTTGAAAATAAAT
Found at i:8740400 original size:85 final size:83
Alignment explanation
Indices: 8740211--8740422 Score: 210
Period size: 85 Copynumber: 2.5 Consensus size: 83
8740201 ATTTGATTAA
* * ** * ** * *
8740211 AGCTCCTCTAAGCAGAGGCTCAACGACTTTAAAAAACATAAACAAAGCTCTTCTAATTAGAGGCT
1 AGCTCCTCTAAACAAAGGCTCAACGACTTTTGAAAAGAT-AA-ATTGCTCCTCTAATCAGAGGCT
*
8740276 CAATAACTTTGAAAATAAAT
64 CAACAACTTTGAAAATAAAT
* * * * *
8740296 AGCTCTTCTAATCAAAGGCTCAATGATTTTTGAAAAG-TAAATTGCTCCTCTAATCAGAGGCTCG
1 AGCTCCTCTAAACAAAGGCTCAACGACTTTTGAAAAGATAAATTGCTCCTCTAATCAGAGGCTCA
*
8740360 ACGACTTTGAAAGATAAAT
66 ACAACTTTGAAA-ATAAAT
* *
8740379 AAAGCTCCTCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAA
1 --AGCTCCTCTAAACAAAGGCTCAACGACTTTTGAAAAGATAAA
8740423 CAAATCTCCT
Statistics
Matches: 102, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
82 29 0.28
83 8 0.08
84 1 0.01
85 60 0.59
86 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (83 bp):
AGCTCCTCTAAACAAAGGCTCAACGACTTTTGAAAAGATAAATTGCTCCTCTAATCAGAGGCTCA
ACAACTTTGAAAATAAAT
Found at i:8740493 original size:86 final size:86
Alignment explanation
Indices: 8740217--8740547 Score: 278
Period size: 86 Copynumber: 3.9 Consensus size: 86
8740207 TTAAAGCTCC
* * ** * * * * *
8740217 TCTAAGCAGAGGCTCAACGACTTTAAAAAACATAAACAAAGCTCTTCTAATTAGAGGCTCAATAA
1 TCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAACAAAGCTCCTCTAAATAGAGGCTTAACAA
* * *
8740282 C-TTTGAAAATAA-ATAGCTCT
66 CTTTTAAAAATAAGA-GGCTTT
* * * * * ** ** *
8740302 TCTAATCAAAGGCTCAATGATTTTTGAAAAG-T-AA-ATTGCTCCTCT-AATCAGAGGCTCGACG
1 TCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAACAAAGCTCCTCTAAAT-AGAGGCTTAACA
* * * * **
8740363 ACTTTGAAAGATAAATAAAGCTCC
65 ACTTTTAAAAAT-AA-GAGGCTTT
* *
8740387 TCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAACAAATCTCCTCTAAATATAGGCTTAACAA
1 TCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAACAAAGCTCCTCTAAATAGAGGCTTAACAA
8740452 CTTTTAAAAATAAGAGGCTTT
66 CTTTTAAAAATAAGAGGCTTT
* * * *
8740473 TCTAATCAGAGGGTTAACGACTTTTGGAAAGATAAACAAAGCTCTTCTAAATAGAGGCTTAACAA
1 TCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAACAAAGCTCCTCTAAATAGAGGCTTAACAA
8740538 CTTTTAAAAA
66 CTTTTAAAAA
8740548 ATAGATTGCT
Statistics
Matches: 195, Mismatches: 42, Indels: 17
0.77 0.17 0.07
Matches are distributed among these distances:
81 2 0.01
82 19 0.10
83 8 0.04
84 3 0.02
85 55 0.28
86 75 0.38
87 4 0.02
88 26 0.13
89 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (86 bp):
TCTAAACAGAGGCTTAACGACTTTTGAAAAGATAAACAAAGCTCCTCTAAATAGAGGCTTAACAA
CTTTTAAAAATAAGAGGCTTT
Found at i:8740580 original size:42 final size:41
Alignment explanation
Indices: 8740513--8740599 Score: 102
Period size: 42 Copynumber: 2.1 Consensus size: 41
8740503 GATAAACAAA
* * * * *
8740513 GCTCTTCTAAATAGAGGCTTAACAACTTTTAAAAAATAGATT
1 GCTCCTCTAAACAGAGGCATAACAAC-TTCAAAAAATAAATT
* *
8740555 GCTCCTCTAAACAGAGGCATCACAACTTCGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCATAACAACTTCAAAAAATAAATT
8740596 GCTC
1 GCTC
8740600 ATTGACAATC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 16 0.42
42 22 0.58
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.28
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCATAACAACTTCAAAAAATAAATT
Done.