Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 60 of 106
Found at i:10760970 original size:18 final size:18
Alignment explanation
Indices: 10760947--10760989 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10760937 AACCTTTAAT
10760947 CCTAAAT-CTAACCCAAAC
1 CCTAAATCCT-ACCCAAAC
10760965 CCTAAATCCTACCCAAAC
1 CCTAAATCCTACCCAAAC
*
10760983 CTTAAAT
1 CCTAAAT
10760990 TATCTAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (18 bp):
CCTAAATCCTACCCAAAC
Found at i:10763664 original size:24 final size:24
Alignment explanation
Indices: 10763637--10763683 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
10763627 TTGGCTGATA
**
10763637 ATGATGCATGCCTGTTTGTGTCTT
1 ATGATGCATGCCTACTTGTGTCTT
*
10763661 ATGATGTATGCCTACTTGTGTCT
1 ATGATGCATGCCTACTTGTGTCT
10763684 AATGGCAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.23, T:0.45
Consensus pattern (24 bp):
ATGATGCATGCCTACTTGTGTCTT
Found at i:10763781 original size:31 final size:31
Alignment explanation
Indices: 10763743--10763810 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
10763733 ATTGTGTTTG
10763743 ATGATGCATGTAT-GCATGTGTCAAATGGTTA
1 ATGATGCATGTATAG-ATGTGTCAAATGGTTA
* *
10763774 ATGATGCATGTGTAGGTGTGTCAAATGGTTA
1 ATGATGCATGTATAGATGTGTCAAATGGTTA
10763805 ATGATG
1 ATGATG
10763811 TATGCTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 33 0.97
32 1 0.03
ACGTcount: A:0.28, C:0.07, G:0.29, T:0.35
Consensus pattern (31 bp):
ATGATGCATGTATAGATGTGTCAAATGGTTA
Found at i:10779223 original size:12 final size:11
Alignment explanation
Indices: 10779204--10779273 Score: 50
Period size: 12 Copynumber: 5.7 Consensus size: 11
10779194 TTATATAAAA
10779204 AATTATTTTTT
1 AATTATTTTTT
10779215 AATTAATTTTTT
1 AATT-ATTTTTT
*
10779227 AATTTTTTATTT
1 AATTATTT-TTT
*
10779239 ATATATATAGTTATAT
1 A-AT-TAT--TT-TTT
10779255 AATTATTTTTT
1 AATTATTTTTT
*
10779266 AAATATTT
1 AATTATTT
10779274 ATATTTAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
11 16 0.33
12 17 0.35
13 2 0.04
14 5 0.10
15 2 0.04
16 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (11 bp):
AATTATTTTTT
Found at i:10781109 original size:15 final size:15
Alignment explanation
Indices: 10781091--10781127 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
10781081 ATAAGAGTTA
10781091 CATTCATAAACATTG
1 CATTCATAAACATTG
*
10781106 CATTCATAAGCATTG
1 CATTCATAAACATTG
*
10781121 CACTCAT
1 CATTCAT
10781128 GTAATTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (15 bp):
CATTCATAAACATTG
Found at i:10781737 original size:44 final size:43
Alignment explanation
Indices: 10781627--10781749 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 43
10781617 AAATGGTGAG
*
10781627 GCCTCTATTTAGAGAAGCCTTTATATTTTTCAAAAGTTATTAA
1 GCCTCTATTTAGAGAAGCTTTTATATTTTTCAAAAGTTATTAA
* * * * * * *
10781670 GCCTTTGTTGAGAAAAGCATTTTATATTTTTTAAAAGTTGTTGA
1 GCCTCTATTTAGAGAAGC-TTTTATATTTTTCAAAAGTTATTAA
* * *
10781714 GTCTCTATTTAGAGGAGCTTTTTATATTGTTCAAAA
1 GCCTCTATTTAGAGAAGC-TTTTATATTTTTCAAAA
10781750 AGTTTGATTT
Statistics
Matches: 62, Mismatches: 17, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
43 14 0.23
44 48 0.77
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (43 bp):
GCCTCTATTTAGAGAAGCTTTTATATTTTTCAAAAGTTATTAA
Found at i:10782787 original size:4 final size:4
Alignment explanation
Indices: 10782770--10782827 Score: 57
Period size: 4 Copynumber: 14.8 Consensus size: 4
10782760 TCTATTTTGA
* * *
10782770 TTAT TTAG TTAT TTAT TTCT TTA- TTAT TTAT TTAT TGTA- ATAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T-TAT TTAT TTAT
*
10782817 ATAT TTAT TTA
1 TTAT TTAT TTA
10782828 ATTAATTTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
3 5 0.12
4 36 0.84
5 2 0.05
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:10782788 original size:27 final size:27
Alignment explanation
Indices: 10782735--10782789 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
10782725 ATTATTTTTG
* * *
10782735 TATTTTGATTTTTATTTCTTTCTTTTC
1 TATTTTGATTTTTAGTTATTTCATTTC
10782762 TATTTTGATTATTTAGTTATTT-ATTTC
1 TATTTTGATT-TTTAGTTATTTCATTTC
10782789 T
1 T
10782790 TTATTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.71
Consensus pattern (27 bp):
TATTTTGATTTTTAGTTATTTCATTTC
Found at i:10782815 original size:16 final size:15
Alignment explanation
Indices: 10782779--10782823 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
10782769 ATTATTTAGT
* *
10782779 TATTTATTTCTTTAT
1 TATTTATTTATTTAA
10782794 TATTTATTTATTGTAA
1 TATTTATTTATT-TAA
*
10782810 TATTTATATATTTA
1 TATTTATTTATTTA
10782824 TTTAATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTTATTTATTTAA
Found at i:10783098 original size:17 final size:17
Alignment explanation
Indices: 10783078--10783123 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
10783068 ATTGTAGTTA
10783078 TGATTATTGTATTTTAT
1 TGATTATTGTATTTTAT
*
10783095 TGATT-TGTATATTTTAT
1 TGATTAT-TGTATTTTAT
10783112 TGAATTA-TGTAT
1 TG-ATTATTGTAT
10783124 ATTACTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
16 1 0.04
17 20 0.83
18 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (17 bp):
TGATTATTGTATTTTAT
Found at i:10783124 original size:19 final size:17
Alignment explanation
Indices: 10783087--10783126 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 17
10783077 ATGATTATTG
10783087 TATTTTATTGATTTGTA
1 TATTTTATTGATTTGTA
10783104 TATTTTATTGAATTATGTA
1 TATTTTATTG-ATT-TGTA
10783123 TATT
1 TATT
10783127 ACTATGTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.48
18 3 0.14
19 8 0.38
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (17 bp):
TATTTTATTGATTTGTA
Found at i:10784415 original size:11 final size:11
Alignment explanation
Indices: 10784399--10784432 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
10784389 TTTGAAAAGA
10784399 AAAAAAAGATG
1 AAAAAAAGATG
**
10784410 AAAAAAAGAAA
1 AAAAAAAGATG
10784421 AAAAAAAGATG
1 AAAAAAAGATG
10784432 A
1 A
10784433 TGAAAATAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (11 bp):
AAAAAAAGATG
Found at i:10784438 original size:22 final size:20
Alignment explanation
Indices: 10784391--10784438 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
10784381 ATAAGAGATT
10784391 TGAAAAGAAAAAAAAGATGA
1 TGAAAAGAAAAAAAAGATGA
**
10784411 AAAAAAGAAAAAAAAAAGATGA
1 TGAAAAG--AAAAAAAAGATGA
10784433 TGAAAA
1 TGAAAA
10784439 TAATGATGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.23
22 17 0.77
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (20 bp):
TGAAAAGAAAAAAAAGATGA
Found at i:10786976 original size:21 final size:21
Alignment explanation
Indices: 10786931--10786985 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
10786921 AATTTCAATG
* *
10786931 GATTTGAACTTTATGATGTGA
1 GATTTGAACTTTATAATATGA
10786952 -ATTT-AACTTTATAATATGTA
1 GATTTGAACTTTATAATATG-A
*
10786972 GATTTGATCTTTAT
1 GATTTGAACTTTAT
10786986 GCTTTTAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 12 0.43
20 5 0.18
21 4 0.14
22 7 0.25
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (21 bp):
GATTTGAACTTTATAATATGA
Found at i:10787211 original size:11 final size:11
Alignment explanation
Indices: 10787197--10787255 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
10787187 ACCGATGAAC
10787197 TACCTACAAAT
1 TACCTACAAAT
*
10787208 TACCTACAGAT
1 TACCTACAAAT
*
10787219 TA-CTATCAGAT
1 TACCTA-CAAAT
**
10787230 T-TTTGACAAAT
1 TACCT-ACAAAT
10787241 TACCTACAAAT
1 TACCTACAAAT
10787252 TACC
1 TACC
10787256 CATGAATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
10 3 0.08
11 34 0.87
12 2 0.05
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (11 bp):
TACCTACAAAT
Found at i:10791572 original size:17 final size:17
Alignment explanation
Indices: 10791550--10791594 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
10791540 AAAAATAAAA
*
10791550 ATTAATTCAATTATTTT
1 ATTAATTAAATTATTTT
10791567 ATTAATTAAATTATTTT
1 ATTAATTAAATTATTTT
10791584 ACTTAA-TAAAT
1 A-TTAATTAAAT
10791595 CATTATCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTAATTAAATTATTTT
Found at i:10815038 original size:3 final size:3
Alignment explanation
Indices: 10815030--10815118 Score: 92
Period size: 3 Copynumber: 29.7 Consensus size: 3
10815020 AAAATTAGTA
* *
10815030 AAT AAT AAT AAT AGT AAAT AAT AAT AAT AAT AAT AAT AAT ATT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
10815076 AAT AAT GAT AAT ATT GAT TA- AAT AAT AA- AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
10815119 AATTTTTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
2 3 0.04
3 63 0.89
4 5 0.07
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:10815238 original size:17 final size:16
Alignment explanation
Indices: 10815211--10815253 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 16
10815201 GTTATCACCT
10815211 ACTCACAACCCTATAAA
1 ACTC-CAACCCTATAAA
10815228 CACTCCAACCCTATAAA
1 -ACTCCAACCCTATAAA
10815245 ACGTCCAAC
1 AC-TCCAAC
10815254 TTTCTCCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.08
17 18 0.75
18 4 0.17
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (16 bp):
ACTCCAACCCTATAAA
Found at i:10815246 original size:18 final size:18
Alignment explanation
Indices: 10815211--10815244 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
10815201 GTTATCACCT
10815211 ACTCACAACCCTATAAAC
1 ACTCACAACCCTATAAAC
10815229 ACTC-CAACCCTATAAA
1 ACTCACAACCCTATAAA
10815245 ACGTCCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCACAACCCTATAAAC
Found at i:10816182 original size:16 final size:17
Alignment explanation
Indices: 10816148--10816190 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
10816138 TTCAAGCTTT
* *
10816148 TTTTTTTAAATTTTCTA
1 TTTTTTTATATTATCTA
10816165 TTTTTTTATATTAT-TA
1 TTTTTTTATATTATCTA
10816181 TTTTTATTAT
1 TTTTT-TTAT
10816191 TTTGAGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTTATATTATCTA
Found at i:10816509 original size:3 final size:3
Alignment explanation
Indices: 10816497--10816534 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
10816487 TATAAAAAGG
*
10816497 ATA ATAA ATA ATA A-A ACA ATA ATA ATA ATA ATA ATA AT
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10816535 GAATTTTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10816754 original size:36 final size:36
Alignment explanation
Indices: 10816711--10816780 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
10816701 TAAAACCCCG
*
10816711 AAATCAAAGCCCCAAA-CATTGAAAACCCTAAAATCA
1 AAATCAAAACCCCAAACCATTG-AAACCCTAAAATCA
* *
10816747 AAATCAAAACTCCAAACCCTTGAAACCCTAAAAT
1 AAATCAAAACCCCAAACCATTGAAACCCTAAAAT
10816781 TGAAACTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 26 0.87
37 4 0.13
ACGTcount: A:0.51, C:0.29, G:0.04, T:0.16
Consensus pattern (36 bp):
AAATCAAAACCCCAAACCATTGAAACCCTAAAATCA
Found at i:10816787 original size:30 final size:29
Alignment explanation
Indices: 10816753--10816881 Score: 120
Period size: 29 Copynumber: 4.4 Consensus size: 29
10816743 ATCAAAATCA
*
10816753 AAACTCCAAACCCTTGAAACCCTAAAATTG
1 AAACTCCAAACCCTTTAAACCCTAAAA-TG
*
10816783 AAACTCTAAACCCTTTAAATCCC-AAAACT-
1 AAACTCCAAACCCTTTAAA-CCCTAAAA-TG
*** *
10816812 AAAC-CCTAAATTTTTTAAACCTTAAAATG
1 AAACTCC-AAACCCTTTAAACCCTAAAATG
* *
10816841 AAACTCTAAAACCTTTAAACCCTAAAATG
1 AAACTCCAAACCCTTTAAACCCTAAAATG
*
10816870 AAACCCCAAACC
1 AAACTCCAAACC
10816882 TCCAAACTCT
Statistics
Matches: 78, Mismatches: 16, Indels: 11
0.74 0.15 0.10
Matches are distributed among these distances:
28 4 0.05
29 48 0.62
30 23 0.29
31 3 0.04
ACGTcount: A:0.46, C:0.28, G:0.03, T:0.23
Consensus pattern (29 bp):
AAACTCCAAACCCTTTAAACCCTAAAATG
Found at i:10816844 original size:29 final size:29
Alignment explanation
Indices: 10816764--10816907 Score: 114
Period size: 29 Copynumber: 5.0 Consensus size: 29
10816754 AACTCCAAAC
* * *
10816764 CCTTGAAACCCTAAAATTGAAACTCTAAAC
1 CCTTTAAACCCTAAAA-TGAAACCCTAAAA
*
10816794 CCTTTAAATCCC-AAAACT-AAACCCTAAAT
1 CCTTTAAA-CCCTAAAA-TGAAACCCTAAAA
** * *
10816823 TTTTTAAACCTTAAAATGAAACTCTAAAA
1 CCTTTAAACCCTAAAATGAAACCCTAAAA
*
10816852 CCTTTAAACCCTAAAATGAAACCC-CAAA
1 CCTTTAAACCCTAAAATGAAACCCTAAAA
** * * *
10816880 CCTCCAAACTCTAAAATTAAACCTTAAA
1 CCTTTAAACCCTAAAATGAAACCCTAAA
10816908 CTCTCGAAAC
Statistics
Matches: 90, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
28 25 0.28
29 50 0.56
30 12 0.13
31 3 0.03
ACGTcount: A:0.46, C:0.26, G:0.03, T:0.25
Consensus pattern (29 bp):
CCTTTAAACCCTAAAATGAAACCCTAAAA
Found at i:10816924 original size:29 final size:28
Alignment explanation
Indices: 10816828--10816925 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 28
10816818 TAAATTTTTT
**
10816828 AAACCTTAAAATGAAACTCTAAAACCTTT
1 AAACCTTAAAATGAAAC-CTAAAACCTCC
* **
10816857 AAACCCTAAAATGAAACCCCAAACCTCC
1 AAACCTTAAAATGAAACCTAAAACCTCC
* * *
10816885 AAA-CTCTAAAATTAAACCTTAAACTCTCG
1 AAACCT-TAAAATGAAACCTAAAAC-CTCC
10816914 AAACCTTAAAAT
1 AAACCTTAAAAT
10816926 CCAAAGCTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.02
28 25 0.45
29 28 0.50
30 2 0.04
ACGTcount: A:0.48, C:0.27, G:0.03, T:0.22
Consensus pattern (28 bp):
AAACCTTAAAATGAAACCTAAAACCTCC
Found at i:10821687 original size:27 final size:26
Alignment explanation
Indices: 10821633--10821695 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
10821623 CGGTTAATAT
*
10821633 ATAAAATTATAATAAGATAAAATAAA
1 ATAATATTATAATAAGATAAAATAAA
* * * *
10821659 ATGATATTATAATTAAGATTAGATTAA
1 ATAATATTATAA-TAAGATAAAATAAA
10821686 ATAATATTAT
1 ATAATATTAT
10821696 TTTATTTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (26 bp):
ATAATATTATAATAAGATAAAATAAA
Found at i:10822648 original size:25 final size:25
Alignment explanation
Indices: 10822588--10822652 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 25
10822578 TTTGATATAA
*
10822588 TTTAATTTAAATTAATAAAATATTATT
1 TTTAATATAAA-T-ATAAAATATTATT
10822615 TTT--TA-AAATATAAAATATTATT
1 TTTAATATAAATATAAAATATTATT
10822637 TTTAATATAAATATAA
1 TTTAATATAAATATAA
10822653 CATTAAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 16 0.47
23 1 0.03
24 5 0.15
25 9 0.26
27 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
TTTAATATAAATATAAAATATTATT
Found at i:10823673 original size:2 final size:2
Alignment explanation
Indices: 10823666--10823691 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10823656 AATAAATGTT
10823666 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
10823692 GGTAATGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10825618 original size:3 final size:3
Alignment explanation
Indices: 10825610--10825649 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
10825600 TTGTTCGATT
10825610 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10825650 AATTATATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10841985 original size:6 final size:6
Alignment explanation
Indices: 10841985--10842028 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
10841975 TTATAGATAT
*
10841985 ATATAC ATATAC ATAT-- ATATAT ATATAC ATATAC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
10842029 GTATATGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
4 4 0.11
6 31 0.89
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (6 bp):
ATATAC
Found at i:10842033 original size:16 final size:16
Alignment explanation
Indices: 10841976--10842028 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
10841966 AGTTATAGAT
*
10841976 TATAGATATATATACA
1 TATACATATATATACA
*
10841992 TATACATATATATATA
1 TATACATATATATACA
10842008 TATACATATACATATACA
1 TATACATAT--ATATACA
10842026 TAT
1 TAT
10842029 GTATATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
16 23 0.72
18 9 0.28
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (16 bp):
TATACATATATATACA
Found at i:10842039 original size:22 final size:22
Alignment explanation
Indices: 10841976--10842033 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
10841966 AGTTATAGAT
*
10841976 TATAGATATATATACATATACA
1 TATACATATATATACATATACA
*
10841998 TATATATATATATACATATACA
1 TATACATATATATACATATACA
*
10842020 TATACATATGTATA
1 TATACATATATATA
10842034 TGTATACAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.40
Consensus pattern (22 bp):
TATACATATATATACATATACA
Found at i:10842435 original size:2 final size:2
Alignment explanation
Indices: 10842428--10842452 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10842418 TCTCAAAATT
10842428 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10842453 TGGACATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10843115 original size:32 final size:30
Alignment explanation
Indices: 10843063--10843122 Score: 70
Period size: 32 Copynumber: 1.9 Consensus size: 30
10843053 ATAATCAAAC
10843063 AAATAAATTAACTAATAAATTAGAACATAATT
1 AAATAAATTAACTAATAAATT-GAA-ATAATT
10843095 AAATAAATCTAA-T-ATAAAATTGAAATAA
1 AAATAAAT-TAACTAAT-AAATTGAAATAA
10843123 ATCCATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
30 4 0.15
31 5 0.19
32 14 0.54
33 3 0.12
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (30 bp):
AAATAAATTAACTAATAAATTGAAATAATT
Found at i:10845886 original size:16 final size:16
Alignment explanation
Indices: 10845867--10845900 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
10845857 AATTAATAAC
10845867 TATTA-AATAAAATATA
1 TATTATAAT-AAATATA
10845883 TATTATAATAAATATA
1 TATTATAATAAATATA
10845899 TA
1 TA
10845901 AACGTTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATTATAATAAATATA
Found at i:10846410 original size:15 final size:15
Alignment explanation
Indices: 10846390--10846420 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10846380 TTCACATAAC
10846390 TTTGCCTCTCTCATG
1 TTTGCCTCTCTCATG
*
10846405 TTTGCCTGTCTCATG
1 TTTGCCTCTCTCATG
10846420 T
1 T
10846421 GACTTAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.29, G:0.16, T:0.48
Consensus pattern (15 bp):
TTTGCCTCTCTCATG
Found at i:10846592 original size:20 final size:20
Alignment explanation
Indices: 10846567--10846612 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
10846557 ACAATCTTTG
*
10846567 TTCGATTTCCTTGTTGAAAC
1 TTCGATTTCCTTGCTGAAAC
10846587 TTCGATTTCCTTGCTGAAAC
1 TTCGATTTCCTTGCTGAAAC
10846607 TTCGAT
1 TTCGAT
10846613 ATTCTCTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (20 bp):
TTCGATTTCCTTGCTGAAAC
Found at i:10851726 original size:11 final size:11
Alignment explanation
Indices: 10851710--10851738 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
10851700 TATCAAGCCC
10851710 AATCCATAGAA
1 AATCCATAGAA
10851721 AATCCATAGAA
1 AATCCATAGAA
10851732 AATCCAT
1 AATCCAT
10851739 CACCACTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (11 bp):
AATCCATAGAA
Found at i:10854247 original size:6 final size:7
Alignment explanation
Indices: 10854194--10854249 Score: 51
Period size: 7 Copynumber: 7.6 Consensus size: 7
10854184 ATGAAAAAAT
10854194 AAAA-AA
1 AAAATAA
10854200 AAAATGAA
1 AAAAT-AA
10854208 AAAGATGAA
1 AAA-AT-AA
*
10854217 AAAATGA
1 AAAATAA
*
10854224 TAAATGAA
1 AAAAT-AA
10854232 AAAATAA
1 AAAATAA
10854239 AAAATAA
1 AAAATAA
10854246 AAAA
1 AAAA
10854250 AATGTAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
6 4 0.10
7 18 0.43
8 12 0.29
9 8 0.19
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:10854258 original size:8 final size:8
Alignment explanation
Indices: 10854198--10854266 Score: 70
Period size: 8 Copynumber: 8.5 Consensus size: 8
10854188 AAAAATAAAA
10854198 AAAAAATG
1 AAAAAATG
10854206 AAAAAGATG
1 AAAAA-ATG
10854215 AAAAAATG
1 AAAAAATG
*
10854223 -ATAAATG
1 AAAAAATG
10854230 AAAAAAT-
1 AAAAAATG
*
10854237 AAAAAATAA
1 AAAAAAT-G
10854246 AAAAAATG
1 AAAAAATG
*
10854254 TAAAAATG
1 AAAAAATG
10854262 TAAAA
1 -AAAA
10854267 TGAGAGAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
7 13 0.25
8 20 0.39
9 18 0.35
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (8 bp):
AAAAAATG
Found at i:10855678 original size:107 final size:109
Alignment explanation
Indices: 10855465--10855671 Score: 321
Period size: 107 Copynumber: 1.9 Consensus size: 109
10855455 AGCTTTGAAT
* * *
10855465 TTTTTGATGTGAATCTCAAATTTTTTTAAATGAAAACCTTTGAATTTAGATTTGAAACTCTAAAA
1 TTTTGGATGTGAACCTCAAATTTTTTTAAATGAAAACCTTTGAATTTAGATGTGAAACTCTAAAA
*
10855530 TCTATCGAATGTGAATCTTTGAATTCGAATGAGAAGTTTTAAAC
66 TCTATCGAATGTGAATATTTGAATTCGAATGAGAAGTTTTAAAC
* * *
10855574 TTTTGGATGTGAACCT-AAA-TTTTTTGAATGAGAACCTTTGAATTTGGATGTGAAACTCTAAAA
1 TTTTGGATGTGAACCTCAAATTTTTTTAAATGAAAACCTTTGAATTTAGATGTGAAACTCTAAAA
10855637 TCTATCGAATGTGAATATTTGAACTT-GAATGAGAA
66 TCTATCGAATGTGAATATTTGAA-TTCGAATGAGAA
10855672 TCTTTAAGAA
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 71 0.79
108 5 0.06
109 14 0.16
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (109 bp):
TTTTGGATGTGAACCTCAAATTTTTTTAAATGAAAACCTTTGAATTTAGATGTGAAACTCTAAAA
TCTATCGAATGTGAATATTTGAATTCGAATGAGAAGTTTTAAAC
Found at i:10856013 original size:31 final size:32
Alignment explanation
Indices: 10855973--10856033 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
10855963 TGCAAGCTCA
*
10855973 AAATCCTTACGAATCTAAAATT-TTATGAATC
1 AAATCCTTACAAATCTAAAATTCTTATGAATC
* **
10856004 AAATTCTTACAAATCTTTAATTCTTATGAA
1 AAATCCTTACAAATCTAAAATTCTTATGAA
10856034 ATTGAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (32 bp):
AAATCCTTACAAATCTAAAATTCTTATGAATC
Found at i:10856096 original size:18 final size:18
Alignment explanation
Indices: 10856073--10856109 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10856063 AATCTATGTG
* *
10856073 TCTTGCGAATCTAAAAAT
1 TCTTGCAAAACTAAAAAT
10856091 TCTTGCAAAACTAAAAAT
1 TCTTGCAAAACTAAAAAT
10856109 T
1 T
10856110 TTATGAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.32
Consensus pattern (18 bp):
TCTTGCAAAACTAAAAAT
Found at i:10856480 original size:20 final size:18
Alignment explanation
Indices: 10856435--10856484 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
10856425 TGTAGGGTTC
10856435 TATTTATTTT-TATTTTA
1 TATTTATTTTGTATTTTA
*
10856452 GACTTTATTTTGTATTTATCA
1 TA-TTTATTTTGTATTT-T-A
10856473 TATTTATTTTGT
1 TATTTATTTTGT
10856485 GGTTTATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.04
18 8 0.30
19 5 0.19
20 11 0.41
21 2 0.07
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.68
Consensus pattern (18 bp):
TATTTATTTTGTATTTTA
Found at i:10857986 original size:22 final size:22
Alignment explanation
Indices: 10857944--10857987 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10857934 CCAAATGGTC
* *
10857944 GCAAAGTATGGTGGCATCGATG
1 GCAAAGTATGGTGACACCGATG
10857966 GCAAAGTATGGCT-ACACCGATG
1 GCAAAGTATGG-TGACACCGATG
10857988 CTGAGATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (22 bp):
GCAAAGTATGGTGACACCGATG
Found at i:10867835 original size:15 final size:17
Alignment explanation
Indices: 10867809--10867847 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
10867799 TACTTTGGCA
10867809 GTATTGTTGAT-A-ATTG
1 GTATT-TTGATAACATTG
10867825 GTATTTTGATAACATTG
1 GTATTTTGATAACATTG
10867842 GTATTT
1 GTATTT
10867848 GTAATCAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 6 0.29
17 10 0.48
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.51
Consensus pattern (17 bp):
GTATTTTGATAACATTG
Found at i:10868293 original size:2 final size:2
Alignment explanation
Indices: 10868286--10868318 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
10868276 TATTATTTAT
10868286 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10868319 TTTGTAAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:10869377 original size:9 final size:9
Alignment explanation
Indices: 10869365--10869406 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
10869355 ATCATCATCA
10869365 TCTTCTTTT
1 TCTTCTTTT
10869374 TCTTCTTTT
1 TCTTCTTTT
*
10869383 ACTT-TTTT
1 TCTTCTTTT
10869391 CTCTT-TTTT
1 -TCTTCTTTT
10869400 TCTTCTT
1 TCTTCTT
10869407 GTTTTCCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 8 0.28
9 21 0.72
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.76
Consensus pattern (9 bp):
TCTTCTTTT
Found at i:10875616 original size:14 final size:14
Alignment explanation
Indices: 10875585--10875615 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
10875575 AAAATATCTC
10875585 TTTTCTCATTTTTA
1 TTTTCTCATTTTTA
10875599 TTTTCTCA-TTTTA
1 TTTTCTCATTTTTA
10875612 TTTT
1 TTTT
10875616 TAACAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTCTCATTTTTA
Found at i:10875991 original size:22 final size:21
Alignment explanation
Indices: 10875957--10875997 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
10875947 TTATATGCAT
*
10875957 AAATATTAATAAAAAATAAAA
1 AAATAATAATAAAAAATAAAA
10875978 AAATAATATATAAAAAATAA
1 AAATAATA-ATAAAAAATAA
10875998 TTCAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATAATAATAAAAAATAAAA
Found at i:10880093 original size:29 final size:30
Alignment explanation
Indices: 10880027--10880114 Score: 94
Period size: 29 Copynumber: 3.0 Consensus size: 30
10880017 CGAATGATTC
*
10880027 TTAAATTATAATAAAATATTTATTATAATAT-
1 TTAAATTAT-A-AAAATATTTAATATAATATA
*
10880058 TTAAATTTTAAAAATATTTAATATAATATA
1 TTAAATTATAAAAATATTTAATATAATATA
**
10880088 TT-AATTATAAATTTA-TTAAT-TAATATA
1 TTAAATTATAAAAATATTTAATATAATATA
10880115 ATACTTACAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
27 7 0.14
28 5 0.10
29 28 0.55
30 3 0.06
31 8 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
TTAAATTATAAAAATATTTAATATAATATA
Found at i:10891320 original size:29 final size:29
Alignment explanation
Indices: 10891253--10891330 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
10891243 TTAAATTATA
10891253 ATAAAATATTTAATATAATAT-TTAAAATT
1 ATAAAATATTTAATATAATATATT-AAATT
*
10891282 TTAAAATATTTAATATAATATATT-AATT
1 ATAAAATATTTAATATAATATATTAAATT
*
10891310 AT-AAATTTATTAAT-TAATATA
1 ATAAAATAT-TTAATATAATATA
10891331 ATACTTAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 12 0.27
28 10 0.23
29 20 0.45
30 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
ATAAAATATTTAATATAATATATTAAATT
Found at i:10894126 original size:24 final size:24
Alignment explanation
Indices: 10894099--10894215 Score: 115
Period size: 24 Copynumber: 5.2 Consensus size: 24
10894089 ATCACATAAA
*
10894099 TAAATATATTAATAATTATGTAAT
1 TAAATATATTAATAATTATGCAAT
* *
10894123 T-AA-ATATTAATAATCATGTAA-
1 TAAATATATTAATAATTATGCAAT
* *
10894144 TAAA-ATA-TAATCA-TA--CAAA
1 TAAATATATTAATAATTATGCAAT
*
10894163 TAAATATATTAATAATTAAGCAAT
1 TAAATATATTAATAATTATGCAAT
10894187 TAAATATATTAATAATTATGCAAT
1 TAAATATATTAATAATTATGCAAT
*
10894211 CAAAT
1 TAAAT
10894216 TAATACAAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.03
19 4 0.05
20 4 0.05
21 11 0.14
22 24 0.31
23 2 0.03
24 31 0.40
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (24 bp):
TAAATATATTAATAATTATGCAAT
Found at i:10894136 original size:64 final size:64
Alignment explanation
Indices: 10894060--10894240 Score: 228
Period size: 64 Copynumber: 2.8 Consensus size: 64
10894050 TCATTTATGC
* *
10894060 AAATA-TATATAATCATGCAATCAAATATAATCACATAAATAAATATATTAATAATTATGTAATT
1 AAATATTA-ATAATCATGCAATCAAATATAATCACA-AAATAAATATATTAATAATTAAGCAATT
10894124 -
64 A
* * *
10894124 AAATATTAATAATCATGTAATAAAATATAATCATACAAATAAATATATTAATAATTAAGCAATTA
1 AAATATTAATAATCATGCAATCAAATATAATCACA-AAATAAATATATTAATAATTAAGCAATTA
* *
10894189 AATATATTAATAATTATGCAATCAAAT-TAAT-AC-AAATAAGTATATTAATAAT
1 AA-ATATTAATAATCATGCAATCAAATATAATCACAAAATAAATATATTAATAAT
10894241 CATGCAAATA
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
62 18 0.17
64 56 0.54
65 8 0.08
66 21 0.20
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (64 bp):
AAATATTAATAATCATGCAATCAAATATAATCACAAAATAAATATATTAATAATTAAGCAATTA
Found at i:10894237 original size:104 final size:103
Alignment explanation
Indices: 10894126--10894316 Score: 253
Period size: 104 Copynumber: 1.8 Consensus size: 103
10894116 ATGTAATTAA
* * *
10894126 ATATTAATAATCATG-TAATA-A-AATATAATCATACAAATAAATATATTAATAATTAAGCAATT
1 ATATTAATAATCATGCAAATATACAATA-AATCACACAAATAAATATATTAATAATGAA--AA-T
10894188 AAATATATTAATAATTATGCAATCAAATTAATACAAATAAGT
62 AAATATATTAATAATTATGCAATCAAATTAATACAAATAAGT
**
10894230 ATATTAATAATCATGCAAATATATCAATAAATCACACAAATAAATATATTAATCCTGAAAATAAA
1 ATATTAATAATCATGCAAATATA-CAATAAATCACACAAATAAATATATTAATAATGAAAATAAA
* *
10894295 TATATTAATACTTATGTAATCA
65 TATATTAATAATTATGCAATCA
10894317 CACACATAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
104 39 0.51
105 6 0.08
106 1 0.01
107 26 0.34
108 4 0.05
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (103 bp):
ATATTAATAATCATGCAAATATACAATAAATCACACAAATAAATATATTAATAATGAAAATAAAT
ATATTAATAATTATGCAATCAAATTAATACAAATAAGT
Found at i:10894366 original size:21 final size:20
Alignment explanation
Indices: 10894330--10894399 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 20
10894320 ACATAAAAAT
10894330 ATTAATAATCATGCAATTAA
1 ATTAATAATCATGCAATTAA
*
10894350 ATTAATAAATTATGCAATTAA
1 ATTAAT-AATCATGCAATTAA
* * *
10894371 ATAAATCATGCAAGCAAATTAA
1 ATTAATAAT-CATGC-AATTAA
10894393 ATTAATA
1 ATTAATA
10894400 CAAATACATT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
20 8 0.20
21 21 0.52
22 11 0.28
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.33
Consensus pattern (20 bp):
ATTAATAATCATGCAATTAA
Found at i:10894373 original size:17 final size:16
Alignment explanation
Indices: 10894349--10894383 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
10894339 CATGCAATTA
*
10894349 AATTAATAAATTATGC
1 AATTAATAAATCATGC
10894365 AATTAAATAAATCATGC
1 AATT-AATAAATCATGC
10894382 AA
1 AA
10894384 GCAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.54, C:0.09, G:0.06, T:0.31
Consensus pattern (16 bp):
AATTAATAAATCATGC
Found at i:10898199 original size:20 final size:21
Alignment explanation
Indices: 10898166--10898204 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
10898156 AATTAAATAT
*
10898166 AAATATAAATATAT-ATGATC
1 AAATATAAAGATATGATGATC
*
10898186 AAATATATAGATATGATGA
1 AAATATAAAGATATGATGA
10898205 GGACACAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
AAATATAAAGATATGATGATC
Found at i:10898519 original size:2 final size:2
Alignment explanation
Indices: 10898512--10898539 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10898502 ATTCAAACAG
10898512 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10898540 GGTAGCAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10906684 original size:2 final size:2
Alignment explanation
Indices: 10906677--10906707 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10906667 AAGTAAGTGA
10906677 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10906708 AATCTTCGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10907126 original size:18 final size:18
Alignment explanation
Indices: 10907100--10907135 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10907090 TTTATAAAAA
*
10907100 TTAATATTAAATATATTT
1 TTAAGATTAAATATATTT
*
10907118 TTAAGATTAAATGTATTT
1 TTAAGATTAAATATATTT
10907136 GATTTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
TTAAGATTAAATATATTT
Found at i:10907893 original size:3 final size:3
Alignment explanation
Indices: 10907885--10907916 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10907875 TGGGTGAGGT
10907885 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10907917 TAAATCCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10912776 original size:3 final size:3
Alignment explanation
Indices: 10912768--10912793 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10912758 TAGTTTTTTG
10912768 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
10912794 GGCTTTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10915638 original size:3 final size:3
Alignment explanation
Indices: 10915630--10915660 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10915620 CTTGCTCTTG
10915630 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
10915661 TACTTATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:10920042 original size:31 final size:31
Alignment explanation
Indices: 10920005--10920064 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
10919995 AGATGCCAAA
10920005 TTTTTTTA-TAGAATAGTCATTTAATTAGACT
1 TTTTTTTATTA-AATAGTCATTTAATTAGACT
* *
10920036 TTTTTTTATTAAATGGTCGTTTAATTAGA
1 TTTTTTTATTAAATAGTCATTTAATTAGA
10920065 ATTAGCAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (31 bp):
TTTTTTTATTAAATAGTCATTTAATTAGACT
Found at i:10925877 original size:23 final size:23
Alignment explanation
Indices: 10925834--10925877 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
10925824 AAATTTAATC
* *
10925834 AAAATATAACATAATTCAAATTT
1 AAAATAAAACATAATTAAAATTT
10925857 AAAATAAAACAT-ATGTAAAAT
1 AAAATAAAACATAAT-TAAAAT
10925878 GGATCATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAATAAAACATAATTAAAATTT
Found at i:10926022 original size:17 final size:17
Alignment explanation
Indices: 10925984--10926016 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10925974 GAAAATTAAG
10925984 AATTTAAAATATAATTT
1 AATTTAAAATATAATTT
10926001 AATTT-AAATAT-ATTT
1 AATTTAAAATATAATTT
10926016 A
1 A
10926017 TTATTTGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 6 0.38
17 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTTAAAATATAATTT
Found at i:10926156 original size:20 final size:20
Alignment explanation
Indices: 10926109--10926156 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
10926099 TCAATTAACA
* *
10926109 AAAATAAAATAATTTAATTT
1 AAAATTAAATAATTTAAATT
**
10926129 AATTTTAAATAATTTAAATT
1 AAAATTAAATAATTTAAATT
10926149 AAAATTAA
1 AAAATTAA
10926157 TCGATTCAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAATTAAATAATTTAAATT
Found at i:10932269 original size:162 final size:160
Alignment explanation
Indices: 10931532--10933391 Score: 1080
Period size: 162 Copynumber: 11.6 Consensus size: 160
10931522 AAAATCAAAG
* * ** * *
10931532 TCAATCATTTGGACAAATTTAATATCAAATATTTAAGCTATTTAAACTATTAAAATAGAACTA-T
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACA-AA-AAGT
* * * * ** * * * **
10931596 AACTGCAAATTTACA-TATTTACCCTTTAATGGCACAAAAAATC-TAAATAGACATAAACAACGA
64 AACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAA
* * * * *
10931659 GTTTTTCACATATATCAAGTGT-GGAAACCAAAT
129 CTTTTTCACACATCT-AAAT-TAGGAAACCAAGT
* * * ** * * * * * * * *
10931692 TTAATAAATCAGACAAATTTAACATTATGTATTGAAGCTATCCAAACTGTTAAAATAGAAAAATA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACA-AAAAGTA
* * * * * * * * **
10931757 ACTAT-AATTT-TATATTTTGCCTTATAATTA-CACAAAAAGTCATAAATAGATATAAACGGTAA
65 ACTGTAAATTTACATTTTTTGCCTTTTAA-CAGCATAAAAAGTCATAAACAGACATAAACAATAA
* * *
10931819 CTTTTTCAAACATCTAAATTATGAAAATCAAGT
129 CTTTTTCACACATCTAAATTA-GGAAACCAAGT
* * * * * * *
10931852 TCAATCATTCGAACAAATTTACTATCATGTATTT-GGCTATCCAAACTATTAAAATAAAAATGTA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAAA-GTA
* ** * ** * ** * * *
10931916 ACTGCAAATTTACAAATTTTGTCTTTTAATGGC-TCAAAAAATGTTAAACAAACATAAACAGTGA
65 ACTGTAAATTTACATTTTTTGCCTTTTAACAGCAT-AAAAAGTCATAAACAGACATAAACAATAA
* * * *
10931980 C-TTTTCACACATATTAA--GGGTCAAAACTAAGT
129 CTTTTTCACACATCTAAATTAGG---AAACCAAGT
* * * * * * ** * * *
10932012 TCAATCATTCGAACAAGTTTAATATTATGTATTGAAACTATCCAATTTGTTAAAATAGATCAAG-
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACA-A-AAAGT
* * * *
10932076 AACTATAAATTT--GTATTTTGACCTTTTTAACACCATAAAAAGTCATAAACAGACATAAACAAT
64 AACTGTAAATTTACATTTTTTG-CC-TTTTAACAGCATAAAAAGTCATAAACAGACATAAACAAT
* * *
10932139 AACTTTTCCACATATCTAAATTAAGGAAACTAAGT
127 AACTTTTTCACACATCTAAATT-AGGAAACCAAGT
* * * * * * *
10932174 TCAAACATTTGGATAAGTTTAATATAATATATTTAAGTTATCTAAACTGTTAAGACAAAAATGTA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAAA-GTA
* * * * * ** * * *
10932239 ACTGCAAATTTACATTATTTGCCCTTTAACATCATAAAAAATGTTAAATAGATATAAATAATAAC
65 ACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAAC
* * *
10932304 TTTTTCACACATATTAAGAGT-GGAAACCAAAT
130 TTTTTCACACAT-CTAA-ATTAGGAAACCAAGT
** * * * * * *
10932336 TCAATCATTTATATAAGTTTAATATCACATATTGAAACTTTCCAAACTATTAAAACAAAACAATA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAA-AGTA
* * ** *
10932401 ACTGCAAGTTTACATTTTTTGCCTTTTAATGGCATAAAAAGTCATAAACAGACATAAACAACAAC
65 ACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAAC
*
10932466 TTTTTCACACATCTAAA-TAGTGAAAATCAAGT
130 TTTTTCACACATCTAAATTAG-G-AAACCAAGT
** * ** *
10932498 TCAATCATTCAGACAAGTTTAATATTATATATTTAAATTATCTAAACTATTAAAACAAAAATGTA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAAA-GTA
* * * * *
10932563 AATGTAAATTTACATTTTTT-ACTCTTTAATAGCACAAAAAGTGC-TAAACAAACATAAAC---A
65 ACTGTAAATTTACATTTTTTGCCT-TTTAACAGCATAAAAAGT-CATAAACAGACATAAACAATA
**
10932623 A-TTTTTCACACAT-TAAGGGT-GGAAACCAAGT
128 ACTTTTTCACACATCTAA-ATTAGGAAACCAAGT
* * * * * *
10932654 TTAATCATTTAGATAAGTTTAATATCATGTATTTAAGCAATCCAAACTATTAAAACAAAACAATA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAA-AGTA
* ** ** * * * * **
10932719 ATTGTAAATTTGTATTTTTTTTCTTTTAACGGCATAACAAGTTATAAACAAACATAAATGATAAC
65 ACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAAC
*
10932784 TTTTTCACACATCTAAATTATGAAAACCAAGT
130 TTTTTCACACATCTAAATTA-GGAAACCAAGT
* * * * * * *
10932816 TCAATTATATGGACAATTTTAATATCATGTATTTAAGCTATCTAAATTGTTAAAACAAAAACGTA
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAAA-GTA
** * * * * * * * * * *
10932881 ACTACAAATTTATATTTTTTGCTTTTTAACGGCATAAAAAATCTTTAACAGATATAAATAACAAT
65 ACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAAC
* ** **
10932946 TTTTTCACACA-C-ATTATGGGTGAAAATAAAGT
130 TTTTTCACACATCTA-AATTAG-G-AAACCAAGT
* * * * ** * *
10932978 TTAATCATTTGGACAAG-CTAACTATTATGA-ATTGAAGCTATCCACTCTATTAAAATAGAGCAA
1 TCAATCATTTGGACAAGTTTAA-TATCAT-ATATTTAAGCTATCCAAACTATTAAAACA-A-AAA
* * * *
10933041 -TAATTGTAAATATACA-TTTTTGCCTTTTAATAGCA-AAAAAGTAATAAACAGACATAAACAAT
62 GTAACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAAT
* * * *
10933103 AACTTTTTCACATATCTAAACTATGAAATCAAGT
127 AACTTTTTCACACATCTAAATTAGGAAACCAAGT
* * * * * * * *
10933137 TCAATTATTCGAACAAGTTTAATATTATGTATTAAAGCTATCCAAACTTTTAAAATAGAACAA-T
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACA-AA-AAGT
* * * * * * * **
10933201 AATTGTAAATTTATA-TATTTACCTTTTAACAGCA-AAAAAATCATAAACAAACATAACCGGTAA
64 AACTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAA
*
10933264 CTTTTTCACATATCTAAATT-GTGAAAACCAAGT
129 CTTTTTCACACATCTAAATTAG-G-AAACCAAGT
* * * *
10933297 TCAATTATTTGGACAAGTTTAATGTCATATATTTAAGCTATCTAAACTGTTAAAACAGAAATA-T
1 TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACA-AAA-AGT
* *
10933361 AA-T-TAAAATTTTACATTTTTTTCCATTTAAC
64 AACTGT-AAA-TTTACATTTTTTGCCTTTTAAC
10933392 GACAAAAAAT
Statistics
Matches: 1316, Mismatches: 316, Indels: 135
0.74 0.18 0.08
Matches are distributed among these distances:
156 106 0.08
157 8 0.01
158 20 0.02
159 197 0.15
160 292 0.22
161 143 0.11
162 529 0.40
163 10 0.01
164 9 0.01
165 2 0.00
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (160 bp):
TCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACAAAAAGTAA
CTGTAAATTTACATTTTTTGCCTTTTAACAGCATAAAAAGTCATAAACAGACATAAACAATAACT
TTTTCACACATCTAAATTAGGAAACCAAGT
Found at i:10932729 original size:642 final size:639
Alignment explanation
Indices: 10931532--10933353 Score: 1820
Period size: 642 Copynumber: 2.8 Consensus size: 639
10931522 AAAATCAAAG
* * * * * *
10931532 TCAATCATTTGGACAAATTTAATATCAA-ATATTTAAGCTATTTAAACTATTAAAATAGAACTAT
1 TCAATCATTTGGACAAATTTAATAT-AATATATTTAAGCTATCTAAACTGTTAAAACAAAAATGT
* * * * * * * *
10931596 AACTGCAAATTTACA-TATTTACCCTTTAATGGCACAAAAAATCTAAATAGACATAAACAACGAG
65 AACTGCAAATTTACATTATTTGCCCTTTAACGGCATAAAAAATTTAAATAGATATAAATAACAAC
* * * * * * * * **
10931660 TTTTTCACATATATCAAGTGTGGAAACCAAATTTAATAAATCAGACAAATTTAACATTATGTATT
130 TTTTTCACACATATTAAGAGTGGAAACCAAATTTAATCATTTAGACAAGTTTAATATTACATATT
* * * * *
10931725 GAAGCTATCCAAACTGTTAAAATAGAAA-AATAACTATAATTT-TATATTTTGCCTTATAATTA-
195 GAAGCTATCCAAACTATTAAAATA-AAACAATAACTGTAATTTACATTTTTTGCCTTTTAA-TAG
* * ** * *
10931787 CACAAAAAGTCATAAATAGATATAAACGGTAACTTTTTCAAACATCTAAATTATGAAAATCAAGT
258 CA-AAAAAGTCATAAACAGACATAAACAATAACTTTTTCACACATCTAAACTATGAAAATCAAGT
* * * **
10931852 TCAATCATTCGAACAAATTTACTATCATGTATTT-GGCTATCCAAACTATTAAAATAAAAATGTA
322 TCAATCATTCGAACAAGTTTAATATTATGTATTTAAACTATCCAAACTATTAAAATAAAAATGTA
* * * * * *
10931916 ACTGCAAATTTACAAATTTTGT-CT-TTTAATGGCTCAAAAAATGTTAAACAAACATAAACAGTG
387 AATGTAAATTTAC--ATTTTTTACTCTTTAATAGCACAAAAAATGCTAAACAAACATAAACA---
* * * * *
10931979 ACTTTTCACACATATTAAGGGTCAAAACTAAGTTCAATCA-TTCGAACAAGTTTAATATTATGTA
447 ATTTTTCACAC--ATTAAGGGTGAAAACCAAGTTCAATCATTTAG-ACAAGTTTAATATCATGTA
* * ** * * *
10932043 TTGAAACTATCCAATTTGTTAAAATAGATCAAGAACTATAAATTTGTATTTTGACCT-TTTTAAC
509 TTTAAGCTATCCAAACTGTTAAAACAAAACAAGAACTATAAATTTGTATTTT-ACCTCTTTTAAC
* * * *
10932107 ACCATAAAAAGTCATAAACAGACATAAACAATAACTTTTCCACATATCTAAATTAAGGAAACTAA
573 ACCATAAAAAGTCATAAACAAACATAAACAATAACTTTTCCACACATCTAAATTAAGAAAACCAA
10932172 GT
638 GT
* * * * *
10932174 TCAAACATTTGGATAAGTTTAATATAATATATTTAAGTTATCTAAACTGTTAAGACAAAAATGTA
1 TCAATCATTTGGACAAATTTAATATAATATATTTAAGCTATCTAAACTGTTAAAACAAAAATGTA
** *
10932239 ACTGCAAATTTACATTATTTGCCCTTTAACATCATAAAAAATGTTAAATAGATATAAATAATAAC
66 ACTGCAAATTTACATTATTTGCCCTTTAACGGCATAAAAAAT-TTAAATAGATATAAATAACAAC
* * * *
10932304 TTTTTCACACATATTAAGAGTGGAAACCAAATTCAATCATTTATATAAGTTTAATATCACATATT
130 TTTTTCACACATATTAAGAGTGGAAACCAAATTTAATCATTTAGACAAGTTTAATATTACATATT
* * * * *
10932369 GAAACTTTCCAAACTATTAAAACAAAACAATAACTGCAAGTTTACATTTTTTGCCTTTTAATGGC
195 GAAGCTATCCAAACTATTAAAATAAAACAATAACTGTAA-TTTACATTTTTTGCCTTTTAATAGC
*
10932434 ATAAAAAGTCATAAACAGACATAAACAACAACTTTTTCACACATCTAAA-TAGTGAAAATCAAGT
259 A-AAAAAGTCATAAACAGACATAAACAATAACTTTTTCACACATCTAAACTA-TGAAAATCAAGT
* * * *
10932498 TCAATCATTC-AGACAAGTTTAATATTATATATTTAAATTATCTAAACTATTAAAACAAAAATGT
322 TCAATCATTCGA-ACAAGTTTAATATTATGTATTTAAACTATCCAAACTATTAAAATAAAAATGT
*
10932562 AAATGTAAATTTACATTTTTTACTCTTTAATAGCACAAAAAGTGCTAAACAAACATAAACAATTT
386 AAATGTAAATTTACATTTTTTACTCTTTAATAGCACAAAAAATGCTAAACAAACATAAACAATTT
* * *
10932627 TTCACACATTAAGGGTGGAAACCAAGTTTAATCATTTAGATAAGTTTAATATCATGTATTTAAGC
451 TTCACACATTAAGGGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTTAAGC
* * * * * *** ** *
10932692 AATCCAAACTATTAAAACAAAACAATAATTGTAAATTTGTATTTTTTTTCTTTTAACGGCATAAC
516 TATCCAAACTGTTAAAACAAAACAAGAACTATAAATTTGTATTTTACCTCTTTTAACACCATAAA
* ** * *
10932757 AAGTTATAAACAAACATAAATGATAACTTTTTCACACATCTAAATTATGAAAACCAAGT
581 AAGTCATAAACAAACATAAACAATAACTTTTCCACACATCTAAATTAAGAAAACCAAGT
* * * * * * *
10932816 TCAATTATATGGACAATTTTAATATCATGTATTTAAGCTATCTAAATTGTTAAAACAAAAACGTA
1 TCAATCATTTGGACAAATTTAATATAATATATTTAAGCTATCTAAACTGTTAAAACAAAAATGTA
* * * ** * * *
10932881 ACTACAAATTTATATTTTTTGCTTTTTAACGGCATAAAAAATCTTTAACAGATATAAATAACAAT
66 ACTGCAAATTTACATTATTTGCCCTTTAACGGCATAAAAAAT-TTAAATAGATATAAATAACAAC
* * * ** * * *
10932946 TTTTTCACACACATTATGGGT-GAAAATAAAGTTTAATCATTTGGACAAG-CTAACTATTATGA-
130 TTTTTCACACATATTAAGAGTGGAAACCAAA-TTTAATCATTTAGACAAGTTTAA-TATTA-CAT
** * * * *
10933008 ATTGAAGCTATCCACTCTATTAAAATAGAGCAATAATTGTAAATATACA-TTTTTGCCTTTTAAT
192 ATTGAAGCTATCCAAACTATTAAAATAAAACAATAACTGT-AATTTACATTTTTTGCCTTTTAAT
* *
10933072 AGCAAAAAAGTAATAAACAGACATAAACAATAACTTTTTCACATATCTAAACTATG-AAATCAAG
256 AGCAAAAAAGTCATAAACAGACATAAACAATAACTTTTTCACACATCTAAACTATGAAAATCAAG
* *
10933136 TTCAATTATTCGAACAAGTTTAATATTATGTA-TTAAAGCTATCCAAACTTTTAAAATAGAACAA
321 TTCAATCATTCGAACAAGTTTAATATTATGTATTTAAA-CTATCCAAACTATTAAAATA-AA-AA
* * * * *
10933200 --TAATTGTAAATTTATA-TATTTAC-CTTTTAACAGCA-AAAAAAT-CATAAACAAACATAACC
383 TGTAAATGTAAATTTACATTTTTTACTC-TTTAATAGCACAAAAAATGC-TAAACAAACATAAAC
* ** * * *
10933259 GGTAACTTTTTCACATATCTAAATTGTGAAAACCAAGTTCAATTATTTGGACAAGTTTAATGTCA
446 ---AA-TTTTTCACACAT-T-AAGGGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCA
* *
10933324 TATATTTAAGCTATCTAAACTGTTAAAACA
505 TGTATTTAAGCTATCCAAACTGTTAAAACA
10933354 GAAATATAAT
Statistics
Matches: 971, Mismatches: 178, Indels: 61
0.80 0.15 0.05
Matches are distributed among these distances:
636 1 0.00
637 21 0.02
638 20 0.02
639 66 0.07
640 51 0.05
641 46 0.05
642 387 0.40
643 93 0.10
644 106 0.11
645 13 0.01
646 99 0.10
647 68 0.07
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.34
Consensus pattern (639 bp):
TCAATCATTTGGACAAATTTAATATAATATATTTAAGCTATCTAAACTGTTAAAACAAAAATGTA
ACTGCAAATTTACATTATTTGCCCTTTAACGGCATAAAAAATTTAAATAGATATAAATAACAACT
TTTTCACACATATTAAGAGTGGAAACCAAATTTAATCATTTAGACAAGTTTAATATTACATATTG
AAGCTATCCAAACTATTAAAATAAAACAATAACTGTAATTTACATTTTTTGCCTTTTAATAGCAA
AAAAGTCATAAACAGACATAAACAATAACTTTTTCACACATCTAAACTATGAAAATCAAGTTCAA
TCATTCGAACAAGTTTAATATTATGTATTTAAACTATCCAAACTATTAAAATAAAAATGTAAATG
TAAATTTACATTTTTTACTCTTTAATAGCACAAAAAATGCTAAACAAACATAAACAATTTTTCAC
ACATTAAGGGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTTAAGCTATCC
AAACTGTTAAAACAAAACAAGAACTATAAATTTGTATTTTACCTCTTTTAACACCATAAAAAGTC
ATAAACAAACATAAACAATAACTTTTCCACACATCTAAATTAAGAAAACCAAGT
Found at i:10932874 original size:480 final size:482
Alignment explanation
Indices: 10931519--10933427 Score: 1503
Period size: 480 Copynumber: 4.0 Consensus size: 482
10931509 AATATCAACT
* * * * * * **
10931519 GTGAAAATCAAAG-TCAATCATTTGGACAAATTTAATATCAAATATTTAAGCTATTTAAACTATT
1 GTGAAAATCAAAGTTCAATCATTCGGACAAGTTTAATATTATATATTGAAACTATCCAAACTATT
* * * * * *
10931583 AAAATAGA-ACTA-TAACTGCAAATTTACATATTT-ACCCTTTAATGGCACAAAAAATCTAAATA
66 AAAATAGAGA-AAGTAACTGTAAATTTACAT-TTTGACTCTTTAATAGCACAAAAAGTCTAAACA
* * * * * * * * * *
10931645 GACATAAACAACGAGTTTTTCACATATATCAAGTGTGGAAACCAAATTTAATAAATCAGACAAAT
129 GACATAAACAA--ACTTTTTCACATATCTAAAGT-AGGAAACCAAGTTCAATCATTTAGACAAGT
* * * * *
10931710 TTAACATTATGTATTGAAGCTATCCAAACTGTTAAAATAGAAAAATAACTATAATTTTATA-T-T
191 TTAATATTATGTATTTAAGCTATCCAAACTGTTAAAACA-AAAAATAACTGTAAATTTATATTAT
* * * * * * * * *
10931773 TTGCCTTATAATTA-CACAAAAAGTCATAAATAGATATAAACGGTAACTTTTTCAAACATCTAAA
255 TTGCCTTTTAA-CAGCATAAAAAATCATAAACAAACATAAACGATAACTTTTTCACACATCTAAA
* * * * * * *
10931837 TTATGAAAATCAAGTTCAATCATTCGAACAAATTTACTATCATGTATTT-GGCTATCCAAACTAT
319 TTATGAAAACCAAGTTCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTAT
* * ** * *
10931901 TAAAATAAAAATGTAACTGCAAATTTACAAATTTTGTCTTTTAATGGC-TCAAAAAATGTTAAAC
384 TAAAACAAAAACGTAACTGCAAATTTACATTTTTTGCCTTTTAATGGCAT-AAAAAATCTTAAAC
* *** * * *
10931965 AAACATAAACAGTGAC-TTTTCACACATATTAAGG
448 AGACATAAACAACAACTTTTTCACACATCTAAATG
* * * * ** *
10931999 GTCAAAA-CTAAGTTCAATCATTCGAACAAGTTTAATATTATGTATTGAAACTATCCAATTTGTT
1 GTGAAAATCAAAGTTCAATCATTCGGACAAGTTTAATATTATATATTGAAACTATCCAAACTATT
** * ** * * * *
10932063 AAAATAGATCAAG-AACTATAAATTTGTATTTTGACCTTTTTAACACCATAAAAAGTCATAAACA
66 AAAATAGAGAAAGTAACTGTAAATTTACATTTTGA-CTCTTTAATAGCACAAAAAGTC-TAAACA
* * * * * *
10932127 GACATAAACAATAACTTTTCCACATATCTAAATTAAGGAAACTAAGTTCAAACATTTGGATAAGT
129 GACATAAAC-A-AACTTTTTCACATATCTAAAGT-AGGAAACCAAGTTCAATCATTTAGACAAGT
* * * * * * * *
10932192 TTAATATAATATATTTAAGTTATCTAAACTGTTAAGACAAAAATGTAACTGCAAATTTACATTAT
191 TTAATATTATGTATTTAAGCTATCCAAACTGTTAAAACAAAAA-ATAACTGTAAATTTATATTAT
* * ** * * * ** * *
10932257 TTGCCCTTTAACATCATAAAAAATGTTAAATAGATATAAATAATAACTTTTTCACACATATTAA-
255 TTGCCTTTTAACAGCATAAAAAATCATAAACAAACATAAACGATAACTTTTTCACACATCTAAAT
* * * ** * * * * *
10932321 GAGTGGAAACCAAATTCAATCATTTATATAAGTTTAATATCACATATTGAAACTTTCCAAACTAT
320 TA-TGAAAACCAAGTTCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTAT
* * * *
10932386 TAAAAC-AAAACAATAACTGCAAGTTTACATTTTTTGCCTTTTAATGGCATAAAAAGTCATAAAC
384 TAAAACAAAAAC-GTAACTGCAAATTTACATTTTTTGCCTTTTAATGGCATAAAAAATCTTAAAC
*
10932450 AGACATAAACAACAACTTTTTCACACATCTAAATA
448 AGACATAAACAACAACTTTTTCACACATCTAAATG
* * * *
10932485 GTGAAAATC-AAGTTCAATCATTCAGACAAGTTTAATATTATATATTTAAATTATCTAAACTATT
1 GTGAAAATCAAAGTTCAATCATTCGGACAAGTTTAATATTATATATTGAAACTATCCAAACTATT
* * *
10932549 AAAACA-A-AAATGTAAATGTAAATTTACATTTTTTACTCTTTAATAGCACAAAAAGTGCTAAAC
66 AAAATAGAGAAA-GTAACTGTAAATTTACA-TTTTGACTCTTTAATAGCACAAAAAGT-CTAAAC
* * * * *
10932612 AAACATAAAC-AA-TTTTTCACACAT-TAAGGGT-GGAAACCAAGTTTAATCATTTAGATAAGTT
128 AGACATAAACAAACTTTTTCACATATCTAA-AGTAGGAAACCAAGTTCAATCATTTAGACAAGTT
* * * * * *
10932673 TAATATCATGTATTTAAGCAATCCAAACTATTAAAACAAAACAATAATTGTAAATTTGTATTTTT
192 TAATATTATGTATTTAAGCTATCCAAACTGTTAAAACAAAA-AATAACTGTAAATTTATATTATT
** * * * * *
10932738 TTTCTTTTAACGGCATAACAAGTTATAAACAAACATAAATGATAACTTTTTCACACATCTAAATT
256 TGCCTTTTAACAGCATAAAAAATCATAAACAAACATAAACGATAACTTTTTCACACATCTAAATT
* * * * * * *
10932803 ATGAAAACCAAGTTCAATTATATGGACAATTTTAATATCATGTATTTAAGCTATCTAAATTGTTA
321 ATGAAAACCAAGTTCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTA
* * * * *
10932868 AAACAAAAACGTAACTACAAATTTATATTTTTTGCTTTTTAACGGCATAAAAAATCTTTAACAGA
386 AAACAAAAACGTAACTGCAAATTTACATTTTTTGCCTTTTAATGGCATAAAAAATCTTAAACAGA
* * * *
10932933 TATAAATAACAATTTTTTCACACA-C-ATTATGG
451 CATAAACAACAACTTTTTCACACATCTA-AAT-G
* * * * **
10932965 GTGAAAAT-AAAGTTTAATCATTTGGACAAG-CTAACTATTATGA-ATTGAAGCTATCCACTCTA
1 GTGAAAATCAAAGTTCAATCATTCGGACAAGTTTAA-TATTAT-ATATTGAAACTATCCAAACTA
* * * * *
10933027 TTAAAATAGAGCAA-TAATTGTAAATATACATTTTTGCCT-TTTAATAGCA-AAAAAGTAATAAA
64 TTAAAATAGAGAAAGTAACTGTAAATTTACA-TTTTGACTCTTTAATAGCACAAAAAGT-CTAAA
* * * * *
10933089 CAGACATAAACAATAACTTTTTCACATATCTAAACTATGAAATCAAGTTCAATTA-TTCGAACAA
127 CAGACATAAAC-A-AACTTTTTCACATATCTAAAGTAGGAAACCAAGTTCAATCATTTAG-ACAA
* * * * *
10933153 GTTTAATATTATGTATTAAAGCTATCCAAACTTTTAAAATAGAACAATAATTGTAAATTTATA-T
189 GTTTAATATTATGTATTTAAGCTATCCAAACTGTTAAAACA-AAAAATAACTGTAAATTTATATT
* * * *
10933217 ATTTACCTTTTAACAGCA-AAAAAATCATAAACAAACATAACCGGTAACTTTTTCACATATCTAA
253 ATTTGCCTTTTAACAGCATAAAAAATCATAAACAAACATAAACGATAACTTTTTCACACATCTAA
* * * * *
10933281 ATTGTGAAAACCAAGTTCAATTATTTGGACAAGTTTAATGTCATATATTTAAGCTATCTAAACTG
318 ATTATGAAAACCAAGTTCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTA
* ** ** * * * * *
10933346 TTAAAACAGAAATATAA-TTAAAATTTTACATTTTTTTCCATTTAACGACA-AAAAATTCTT-AA
383 TTAAAACAAAAACGTAACTGCAAA-TTTACATTTTTTGCCTTTTAATGGCATAAAAAATCTTAAA
* * *
10933408 CAAACATACACGACAACTTT
447 CAGACATAAACAACAACTTT
10933428 CTTATTTAAT
Statistics
Matches: 1123, Mismatches: 264, Indels: 85
0.76 0.18 0.06
Matches are distributed among these distances:
478 22 0.02
479 39 0.03
480 395 0.35
481 166 0.15
482 135 0.12
483 79 0.07
484 93 0.08
485 73 0.07
486 114 0.10
487 7 0.01
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.34
Consensus pattern (482 bp):
GTGAAAATCAAAGTTCAATCATTCGGACAAGTTTAATATTATATATTGAAACTATCCAAACTATT
AAAATAGAGAAAGTAACTGTAAATTTACATTTTGACTCTTTAATAGCACAAAAAGTCTAAACAGA
CATAAACAAACTTTTTCACATATCTAAAGTAGGAAACCAAGTTCAATCATTTAGACAAGTTTAAT
ATTATGTATTTAAGCTATCCAAACTGTTAAAACAAAAAATAACTGTAAATTTATATTATTTGCCT
TTTAACAGCATAAAAAATCATAAACAAACATAAACGATAACTTTTTCACACATCTAAATTATGAA
AACCAAGTTCAATCATTTGGACAAGTTTAATATCATATATTTAAGCTATCCAAACTATTAAAACA
AAAACGTAACTGCAAATTTACATTTTTTGCCTTTTAATGGCATAAAAAATCTTAAACAGACATAA
ACAACAACTTTTTCACACATCTAAATG
Found at i:10938267 original size:15 final size:15
Alignment explanation
Indices: 10938247--10938278 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10938237 GTTTTGCATA
*
10938247 TAAGCAATAACCATT
1 TAAGCAAAAACCATT
10938262 TAAGCAAAAACCATT
1 TAAGCAAAAACCATT
10938277 TA
1 TA
10938279 CAAATTGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (15 bp):
TAAGCAAAAACCATT
Found at i:10941984 original size:31 final size:32
Alignment explanation
Indices: 10941949--10942010 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
10941939 AATAAGTTCA
* *
10941949 AAATAATTTGTATAT-ATTTTTTTACTTTTTT
1 AAATAATTTATATATAATTTTTTTAATTTTTT
*
10941980 AAATATTTTATATATAATTTTTTTAATTTTT
1 AAATAATTTATATATAATTTTTTTAATTTTT
10942011 CTTTTGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (32 bp):
AAATAATTTATATATAATTTTTTTAATTTTTT
Found at i:10948754 original size:11 final size:11
Alignment explanation
Indices: 10948734--10948768 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
10948724 TAAAAATTTC
*
10948734 TTTTTCTTATT
1 TTTTTATTATT
10948745 TTTTTATTATT
1 TTTTTATTATT
10948756 TTTTTATTATT
1 TTTTTATTATT
10948767 TT
1 TT
10948769 ATAAGATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTATTATT
Found at i:10948952 original size:21 final size:21
Alignment explanation
Indices: 10948903--10948967 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
10948893 ATGCATAAAT
*
10948903 ATTAATAATAAAATTTAAAATA
1 ATTAA-AATAAAATTTAAAAAA
** *
10948925 ACAAAAATAATATTTAAAAAA
1 ATTAAAATAAAATTTAAAAAA
*
10948946 ATTAAAA-AAAATTAAAAAAA
1 ATTAAAATAAAATTTAAAAAA
10948966 AT
1 AT
10948968 CGTCTGAACC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 13 0.37
21 19 0.54
22 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (21 bp):
ATTAAAATAAAATTTAAAAAA
Found at i:10948955 original size:10 final size:10
Alignment explanation
Indices: 10948940--10948967 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
10948930 AATAATATTT
10948940 AAAAAAATTA
1 AAAAAAATTA
10948950 AAAAAAATTA
1 AAAAAAATTA
10948960 AAAAAAAT
1 AAAAAAAT
10948968 CGTCTGAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAAATTA
Found at i:10949971 original size:17 final size:16
Alignment explanation
Indices: 10949951--10949983 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
10949941 TTCTATTATA
10949951 TTTTTTTTATTTGTTTT
1 TTTTTTTTATTT-TTTT
10949968 TTTTTTTTATTTTTTT
1 TTTTTTTTATTTTTTT
10949984 ATATTTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.00, G:0.03, T:0.91
Consensus pattern (16 bp):
TTTTTTTTATTTTTTT
Found at i:10949977 original size:28 final size:31
Alignment explanation
Indices: 10949932--10949994 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 31
10949922 CCTCTCCTTG
*
10949932 GTTTTTTTCTTCTATTATATTTTTTTTA-TTT
1 GTTTTTTTCTTCTATTAT-TTTTTTATATTTT
10949963 GTTTTTTT-TT-T-TTATTTTTTTATATTTT
1 GTTTTTTTCTTCTATTATTTTTTTATATTTT
10949991 GTTT
1 GTTT
10949995 AATTTTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.27
28 11 0.37
29 1 0.03
30 2 0.07
31 8 0.27
ACGTcount: A:0.11, C:0.03, G:0.05, T:0.81
Consensus pattern (31 bp):
GTTTTTTTCTTCTATTATTTTTTTATATTTT
Found at i:10949980 original size:8 final size:8
Alignment explanation
Indices: 10949952--10949990 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
10949942 TCTATTATAT
10949952 TTTTTTTA
1 TTTTTTTA
*
10949960 TTTGTTTTT
1 TTT-TTTTA
10949969 TTTTTTTA
1 TTTTTTTA
10949977 TTTTTTTA
1 TTTTTTTA
10949985 TATTTT
1 T-TTTT
10949991 GTTTAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 16 0.59
9 11 0.41
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (8 bp):
TTTTTTTA
Found at i:10949990 original size:17 final size:17
Alignment explanation
Indices: 10949953--10949990 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
10949943 CTATTATATT
*
10949953 TTTTTTATTTGTTTTTT
1 TTTTTTATTTGTTTTTA
10949970 TTTTTTATTT-TTTTATA
1 TTTTTTATTTGTTTT-TA
10949987 TTTT
1 TTTT
10949991 GTTTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.87
Consensus pattern (17 bp):
TTTTTTATTTGTTTTTA
Found at i:10950000 original size:26 final size:26
Alignment explanation
Indices: 10949949--10950004 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
10949939 TCTTCTATTA
* **
10949949 TATTTTTTTTATTTGTTTTTTTTTTT
1 TATTTTTTTTATTTGTGTTTAATTTT
10949975 TATTTTTTTATATTT-TGTTTAATTTT
1 TATTTTTTT-TATTTGTGTTTAATTTT
10950001 TATT
1 TATT
10950005 ATTGTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.82
Consensus pattern (26 bp):
TATTTTTTTTATTTGTGTTTAATTTT
Found at i:10950000 original size:27 final size:26
Alignment explanation
Indices: 10949949--10950001 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
10949939 TCTTCTATTA
**
10949949 TATTTTTTTTATTTGTTTTTTTTTTT
1 TATTTTTTTTATTTGTTTTAATTTTT
10949975 TATTTTTTTATATTT-TGTTTAATTTTT
1 TATTTTTTT-TATTTGT-TTTAATTTTT
10950002 ATTATTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (26 bp):
TATTTTTTTTATTTGTTTTAATTTTT
Found at i:10950024 original size:21 final size:21
Alignment explanation
Indices: 10950000--10950051 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
10949990 TGTTTAATTT
10950000 TTATTATTGTAT-TTAATAATA
1 TTATTATT-TATCTTAATAATA
*
10950021 TTATTA-TTATCTTATTAATA
1 TTATTATTTATCTTAATAATA
10950041 TCTATTATTTA
1 T-TATTATTTA
10950052 ATAAAAATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 10 0.37
21 11 0.41
22 3 0.11
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (21 bp):
TTATTATTTATCTTAATAATA
Found at i:10950036 original size:24 final size:24
Alignment explanation
Indices: 10950000--10950049 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
10949990 TGTTTAATTT
10950000 TTATTATTGTATTTAATA-ATATTA
1 TTATTATTGTA-TTAATATATATTA
*
10950024 TTATTATCT-TATTAATATCTATTA
1 TTATTAT-TGTATTAATATATATTA
10950048 TT
1 TT
10950050 TAATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 6 0.26
24 16 0.70
25 1 0.04
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (24 bp):
TTATTATTGTATTAATATATATTA
Found at i:10950209 original size:23 final size:24
Alignment explanation
Indices: 10950183--10950232 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 24
10950173 TTTTTTTATA
* *
10950183 CTTAAACTAATCAAAAA-GCTTTT
1 CTTAAACAAATCAAAAATGCTTCT
*
10950206 CTT-ATCAAATCAAAAATGCTTCT
1 CTTAAACAAATCAAAAATGCTTCT
10950229 CTTA
1 CTTA
10950233 CTTGAGGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.40, C:0.20, G:0.04, T:0.36
Consensus pattern (24 bp):
CTTAAACAAATCAAAAATGCTTCT
Found at i:10950344 original size:49 final size:49
Alignment explanation
Indices: 10950267--10950434 Score: 140
Period size: 49 Copynumber: 3.4 Consensus size: 49
10950257 AATTAAAATA
* * ** * * *
10950267 TAGAAAAGGCTCATCTCAGTAAATGCTCAACAACTTTGAGATCTAATCT
1 TAGAAAAAGCTCCTCTCAACAAAAGCTCAACAACTTTAAAATCTAATCT
* * * *
10950316 TAGAAAAAGCTCCTCTCAACAAAAGCTCAACGATTTTAAAATTTTATCT
1 TAGAAAAAGCTCCTCTCAACAAAAGCTCAACAACTTTAAAATCTAATCT
* * * * * * * * *
10950365 T-GAAAAAGGCTCTTTTTAGCAGAGGTTCAACAACTTTAAAATCTCATAT
1 TAGAAAAA-GCTCCTCTCAACAAAAGCTCAACAACTTTAAAATCTAATCT
10950414 TAGAAAAAGCTCCTCTCAACA
1 TAGAAAAAGCTCCTCTCAACA
10950435 GAGGCTCAGC
Statistics
Matches: 90, Mismatches: 27, Indels: 4
0.74 0.22 0.03
Matches are distributed among these distances:
48 6 0.07
49 78 0.87
50 6 0.07
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (49 bp):
TAGAAAAAGCTCCTCTCAACAAAAGCTCAACAACTTTAAAATCTAATCT
Found at i:10950437 original size:49 final size:49
Alignment explanation
Indices: 10950291--10950442 Score: 153
Period size: 49 Copynumber: 3.1 Consensus size: 49
10950281 CTCAGTAAAT
* * * *
10950291 GCTCAACAACTTTGAGATCTAATCTTAGAAAAAGCTCCTCTCAACAAAA
1 GCTCAACAACTTTAAAATCTAATCTTAGAAAAAGCTCCTCTCAACAGAG
* * * * * * * *
10950340 GCTCAACGATTTTAAAATTTTATCTT-GAAAAAGGCTCTTTTTAGCAGAG
1 GCTCAACAACTTTAAAATCTAATCTTAGAAAAA-GCTCCTCTCAACAGAG
* * *
10950389 GTTCAACAACTTTAAAATCTCATATTAGAAAAAGCTCCTCTCAACAGAG
1 GCTCAACAACTTTAAAATCTAATCTTAGAAAAAGCTCCTCTCAACAGAG
10950438 GCTCA
1 GCTCA
10950443 GCAGAGGCTC
Statistics
Matches: 78, Mismatches: 23, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
48 6 0.08
49 66 0.85
50 6 0.08
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (49 bp):
GCTCAACAACTTTAAAATCTAATCTTAGAAAAAGCTCCTCTCAACAGAG
Found at i:10950447 original size:11 final size:11
Alignment explanation
Indices: 10950428--10950457 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10950418 AAAAGCTCCT
10950428 CTCAACAGAGG
1 CTCAACAGAGG
*
10950439 CTCAGCAGAGG
1 CTCAACAGAGG
10950450 CTCAACAG
1 CTCAACAG
10950458 CTTTAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.27, T:0.10
Consensus pattern (11 bp):
CTCAACAGAGG
Found at i:10950537 original size:13 final size:13
Alignment explanation
Indices: 10950521--10950562 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
10950511 TTAAAAATCT
10950521 CTCTTGAAAAAAG
1 CTCTTGAAAAAAG
**
10950534 CTCTT-AAAAATCT
1 CTCTTGAAAAA-AG
10950547 CTCTTGAAAAAAG
1 CTCTTGAAAAAAG
10950560 CTC
1 CTC
10950563 CTTTTAGTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 5 0.22
13 13 0.57
14 5 0.22
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (13 bp):
CTCTTGAAAAAAG
Found at i:10950547 original size:26 final size:26
Alignment explanation
Indices: 10950511--10950562 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
10950501 CTTAACAACT
10950511 TTAAAAATCTCTCTTGAAAAAAGCTC
1 TTAAAAATCTCTCTTGAAAAAAGCTC
10950537 TTAAAAATCTCTCTTGAAAAAAGCTC
1 TTAAAAATCTCTCTTGAAAAAAGCTC
10950563 CTTTTAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (26 bp):
TTAAAAATCTCTCTTGAAAAAAGCTC
Found at i:10950608 original size:75 final size:76
Alignment explanation
Indices: 10950456--10950607 Score: 227
Period size: 75 Copynumber: 2.0 Consensus size: 76
10950446 GAGGCTCAAC
* * *
10950456 AGCTTTAAAAATTCTCATCTTGAAGAAGGCTCCTCTTAGTAAAGGCTTAACAACTTTAAAAATCT
1 AGCTTTAAAAATTCTCATCTTGAAAAAAGCTCCTCTTAGTAAAGGCTCAACAACTTTAAAAATCT
*
10950521 CTCTTGAAAAA
66 ATCTTGAAAAA
*
10950532 AGCTCTTAAAAA-TCTC-TCTTGAAAAAAGCTCCTTTTAGTAAAGGCTCAACAACTTTAAAAATT
1 AGCT-TTAAAAATTCTCATCTTGAAAAAAGCTCCTCTTAGTAAAGGCTCAACAACTTTAAAAA-T
10950595 CTATCTTGAAAAA
64 CTATCTTGAAAAA
10950608 GGCTCATCTC
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
75 41 0.59
76 21 0.30
77 7 0.10
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (76 bp):
AGCTTTAAAAATTCTCATCTTGAAAAAAGCTCCTCTTAGTAAAGGCTCAACAACTTTAAAAATCT
ATCTTGAAAAA
Found at i:10950627 original size:50 final size:48
Alignment explanation
Indices: 10950537--10950852 Score: 230
Period size: 50 Copynumber: 6.4 Consensus size: 48
10950527 AAAAAAGCTC
* * * * * * *
10950537 TTAAAAATCTCTCTTGAAAAAAGCTCCTTTTAGTAAAGGCTCAACAACT
1 TTAAAATTCTATCTTGAAAAAAACTCATCTCA-TAGAGGCTCAACAACT
**
10950586 TTAAAAATTCTATCTTGAAAAAGGCTCATCTCATCAGAGGCTCAACAACT
1 TT-AAAATTCTATCTTGAAAAAAACTCATCTCAT-AGAGGCTCAACAACT
** * *
10950636 TTAAAA-TCTTATCTTGAAAAAAAAAC-TCTCAATAGGGGC-CTAACAATT
1 TTAAAATTC-TATCTTGAAAAAAACTCATCTC-ATAGAGGCTC-AACAACT
* * * *
10950684 TTAAAATTTTATCTTGAAAAAAAACTCTTCTTAGTAGAGGCTCAATAACT
1 TTAAAATTCTATCTTG-AAAAAAACTCATCTCA-TAGAGGCTCAACAACT
* * * * *
10950734 TT-AAATTCTTTTCTTGAAAAAAACTCCTCTCAGCAGAGGCTTAATAACT
1 TTAAAATTC-TATCTTGAAAAAAACTCATCTCA-TAGAGGCTCAACAACT
* * **
10950783 TTAAAATTCTCTTCCTGAAAAAGGCTCCA-CTCAGTAGAGGCTCAACAACT
1 TTAAAATTCT-ATCTTGAAAAAAACT-CATCTCA-TAGAGGCTCAACAACT
*
10950833 TTAAAA-TCTTTCTTGAAAAA
1 TTAAAATTCTATCTTGAAAAA
10950853 GCTATCCTAG
Statistics
Matches: 219, Mismatches: 34, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
47 1 0.00
48 40 0.18
49 72 0.33
50 104 0.47
51 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (48 bp):
TTAAAATTCTATCTTGAAAAAAACTCATCTCATAGAGGCTCAACAACT
Found at i:10950824 original size:99 final size:98
Alignment explanation
Indices: 10950540--10950852 Score: 314
Period size: 98 Copynumber: 3.2 Consensus size: 98
10950530 AAAGCTCTTA
* * * * * * *
10950540 AAAATC-TCTCTTGAAAAAAGCTCCTTTTAGTAAAGGCTCAACAACTTTAAAAATTCTATCTTGA
1 AAAATCTTTTCTTGAAAAAAACTCCTCTCAGTAGAGGCTTAACAACTTT-AAAATTCTTTCTTGA
10950604 AAAAGGCT-CATCTCA-TCAGAGGCTCAACAACTTT
65 AAAAGGCTCCA-CTCAGT-AGAGGCTCAACAACTTT
* ** * * * *
10950638 AAAATCTTATCTTGAAAAAAA-AACTCTCAATAGGGGCCTAACAATTTTAAAATT-TTATCTTGA
1 AAAATCTTTTCTTGAAAAAAACTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTT-TCTTG-
** ** * *
10950701 AAAAAAACTCTTCTTAGTAGAGGCTCAATAACTTT
64 AAAAAGGCTCCACTCAGTAGAGGCTCAACAACTTT
* * * *
10950736 AAATTCTTTTCTTGAAAAAAACTCCTCTCAGCAGAGGCTTAATAACTTTAAAATTCTCTTCCTGA
1 AAAATCTTTTCTTGAAAAAAACTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCT-TTCTTGA
10950801 AAAAGGCTCCACTCAGTAGAGGCTCAACAACTTT
65 AAAAGGCTCCACTCAGTAGAGGCTCAACAACTTT
10950835 AAAATC-TTTCTTGAAAAA
1 AAAATCTTTTCTTGAAAAA
10950853 GCTATCCTAG
Statistics
Matches: 170, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
96 1 0.01
97 11 0.06
98 80 0.47
99 72 0.42
100 5 0.03
101 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (98 bp):
AAAATCTTTTCTTGAAAAAAACTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTTTCTTGAA
AAAGGCTCCACTCAGTAGAGGCTCAACAACTTT
Found at i:10951408 original size:98 final size:99
Alignment explanation
Indices: 10951015--10951669 Score: 651
Period size: 99 Copynumber: 6.6 Consensus size: 99
10951005 TAAAATTTGG
** * * *
10951015 ATATCACCATAAAAAAAATACAAATCAAACC-TTAACATTCGGATATCACCACCGAGAATATGC-
1 ATATCACCATCGAGAAAATGCAAATC-AACCTTTAACACTCGGATATCACCACCGAGAATATGCA
* * * *
10951078 AATGAC-TTCGACTATCACCACTGAAGGAAACTCAA
65 AATGACTTTGGA-TATCACCACCGAAGAAAACTCGA
* * * * *
10951113 ATATCACCATCGAAGGATATGCAAATCAACCTTTAACACTCAGATATCACCACTGAGAATATGTA
1 ATATCACCATCG-AGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATGCA
* *
10951178 AATGAC-TTGAAATATCACCACCGAAGAAAACTCAA
65 AATGACTTTG-GATATCACCACCGAAGAAAACTCGA
* * * * * * *
10951213 ATATCACTATCGAAAAAATGCAATTAAAGCTTTAACACTCGGATATCACCATCAAGAATATGCAA
1 ATATCACCATCGAGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATGCAA
* *
10951278 ATGACTTCGGATATCATCACCGAAGAAAACTCGA
66 ATGACTTTGGATATCACCACCGAAGAAAACTCGA
*
10951312 ATATCACCATCGAGAAAATGCAAATCAACCTTTAACTCTCGGATA-CACCACCGAGAATATGCAA
1 ATATCACCATCGAGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATGCAA
* * *
10951376 ATGACTTTGGATATCATCACTGAAGGAAACTCGA
66 ATGACTTTGGATATCACCACCGAAGAAAACTCGA
* * * * **
10951410 ATATCACCATTGAGAAAATGTAATTGAAGTTTTAACACTCGGATATCACCACCGAGAATATGCAA
1 ATATCACCATCGAGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATGCAA
*** * *
10951475 ATGACTTTGGATATTGTCACCAAAGAAAACTTGA
66 ATGACTTTGGATATCACCACCGAAGAAAACTCGA
* * * *
10951509 ATATTACCACTGAGAGAATGCAAAGGCAAATTCAAACTTTAA-ACTCGGATATCACCACCGAGAA
1 ATATCACCA-T-CGAG-A---AAATGCAAA-TCAACCTTTAACACTCGGATATCACCACCGAGAA
* * * * *
10951573 AATGCAAATGACTTTGG-TATCGCCACTGAAGGAAACTTGA
59 TATGCAAATGACTTTGGATATCACCACCGAAGAAAACTCGA
* * * * * *
10951613 ATATCACCATTGAGAAAATACAATTCAAACC-TTGATACTCTGATATCACCACCGAGA
1 ATATCACCATCGAGAAAATGCAAATC-AACCTTTAACACTCGGATATCACCACCGAGA
10951670 GAATGCTAGT
Statistics
Matches: 466, Mismatches: 76, Indels: 30
0.81 0.13 0.05
Matches are distributed among these distances:
97 5 0.01
98 129 0.28
99 201 0.43
100 43 0.09
101 5 0.01
102 4 0.01
103 1 0.00
104 26 0.06
105 44 0.09
106 8 0.02
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.23
Consensus pattern (99 bp):
ATATCACCATCGAGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATGCAA
ATGACTTTGGATATCACCACCGAAGAAAACTCGA
Found at i:10951456 original size:197 final size:198
Alignment explanation
Indices: 10951046--10951669 Score: 731
Period size: 197 Copynumber: 3.1 Consensus size: 198
10951036 AAATCAAACC
* * * *
10951046 TTAACATTCGGATATCACCACCGAGAATATGC-AATGACTTC-GACTATCACCACTGAAGGAAAC
1 TTAACACTCGGATATCACCACCGAGAATATGCAAATGACTTCGGA-TATCATCACCGAAGAAAAC
* * * * *
10951109 TCAAATATCACCATCGAAGGATATGCAAATCAACCTTTAACACTCAGATATCACCACTGAGAATA
65 TCGAATATCACCATCG-AGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATA
* * * * * * * *
10951174 TGTAAATGAC-TTGAAATATCACCACCGAAGAAAACTCAAATATCACTATCGAAAAAATGCAATT
129 TGCAAATGACTTTG-GATATCACCACTGAAGGAAACTCGAATATCACCATTGAGAAAATGCAATT
10951238 AAAGCT
193 AAAGCT
* *
10951244 TTAACACTCGGATATCACCATCAAGAATATGCAAATGACTTCGGATATCATCACCGAAGAAAACT
1 TTAACACTCGGATATCACCACCGAGAATATGCAAATGACTTCGGATATCATCACCGAAGAAAACT
*
10951309 CGAATATCACCATCGAGAAAATGCAAATCAACCTTTAACTCTCGGATA-CACCACCGAGAATATG
66 CGAATATCACCATCGAGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATG
* * *
10951373 CAAATGACTTTGGATATCATCACTGAAGGAAACTCGAATATCACCATTGAGAAAATGTAATTGAA
131 CAAATGACTTTGGATATCACCACTGAAGGAAACTCGAATATCACCATTGAGAAAATGCAATTAAA
*
10951438 GTT
196 GCT
* ** *
10951441 TTAACACTCGGATATCACCACCGAGAATATGCAAATGACTTTGGATATTGTCACCAAAGAAAACT
1 TTAACACTCGGATATCACCACCGAGAATATGCAAATGACTTCGGATATCATCACCGAAGAAAACT
* * * * *
10951506 TGAATATTACCACTGAGAGAATGCAAAGGCAAATTCAAACTTTAA-ACTCGGATATCACCACCGA
66 CGAATATCACCA-T-CGAG-A---AAATGCAAA-TCAACCTTTAACACTCGGATATCACCACCGA
* * * *
10951570 GAAAATGCAAATGACTTTGG-TATCGCCACTGAAGGAAACTTGAATATCACCATTGAGAAAATAC
124 GAATATGCAAATGACTTTGGATATCACCACTGAAGGAAACTCGAATATCACCATTGAGAAAATGC
*
10951634 AATTCAAA-CC
189 AATT-AAAGCT
* * *
10951644 TTGATACTCTGATATCACCACCGAGA
1 TTAACACTCGGATATCACCACCGAGA
10951670 GAATGCTAGT
Statistics
Matches: 366, Mismatches: 48, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
197 136 0.37
198 62 0.17
199 43 0.12
200 3 0.01
203 82 0.22
204 40 0.11
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (198 bp):
TTAACACTCGGATATCACCACCGAGAATATGCAAATGACTTCGGATATCATCACCGAAGAAAACT
CGAATATCACCATCGAGAAAATGCAAATCAACCTTTAACACTCGGATATCACCACCGAGAATATG
CAAATGACTTTGGATATCACCACTGAAGGAAACTCGAATATCACCATTGAGAAAATGCAATTAAA
GCT
Found at i:10952070 original size:35 final size:35
Alignment explanation
Indices: 10952020--10952107 Score: 140
Period size: 35 Copynumber: 2.5 Consensus size: 35
10952010 ATAAGGATGC
* *
10952020 AAATACAAATATCTTTTCGTAAAATGATGCACATG
1 AAATGCAAATATCTTTTCGTAAAATGATACACATG
* *
10952055 AAATGCAAATGTCTTTTCTTAAAATGATACACATG
1 AAATGCAAATATCTTTTCGTAAAATGATACACATG
10952090 AAATGCAAATATCTTTTC
1 AAATGCAAATATCTTTTC
10952108 AAAAAATACC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (35 bp):
AAATGCAAATATCTTTTCGTAAAATGATACACATG
Found at i:10952296 original size:20 final size:20
Alignment explanation
Indices: 10952258--10952301 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
10952248 CAAAGTTCTT
*
10952258 TTTCATTCAATCCCGAAT-C
1 TTTCATTCAATCCCAAATCC
*
10952277 TTTCATCTCAATTCCAAATCC
1 TTTCAT-TCAATCCCAAATCC
10952298 TTTC
1 TTTC
10952302 TTTGCTGCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.41
Consensus pattern (20 bp):
TTTCATTCAATCCCAAATCC
Found at i:10956682 original size:18 final size:18
Alignment explanation
Indices: 10956646--10956682 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
10956636 TTAAAAAATA
10956646 TTTTTTTTGTTTTGATAT
1 TTTTTTTTGTTTTGATAT
10956664 TTTTGTTTTGTTTTG-TAT
1 TTTT-TTTTGTTTTGATAT
10956682 T
1 T
10956683 ACACACAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.08, C:0.00, G:0.14, T:0.78
Consensus pattern (18 bp):
TTTTTTTTGTTTTGATAT
Found at i:10961793 original size:15 final size:15
Alignment explanation
Indices: 10961739--10961824 Score: 73
Period size: 16 Copynumber: 5.5 Consensus size: 15
10961729 GATTTCGAAT
* *
10961739 TTTTGGGGGTTTTGAA
1 TTTTAGGGG-TTTGGA
*
10961755 TTTTAGGGGTTTCAGA
1 TTTTAGGGGTTT-GGA
10961771 TTTTAGGGGTTTGGA
1 TTTTAGGGGTTTGGA
* *
10961786 TTTAAGGGATTTTGGA
1 TTTTAGGG-GTTTGGA
* **
10961802 TTTTAAGATTTTGGA
1 TTTTAGGGGTTTGGA
10961817 TTTTAGGG
1 TTTTAGGG
10961825 ATTTTAGAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
15 25 0.44
16 32 0.56
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.48
Consensus pattern (15 bp):
TTTTAGGGGTTTGGA
Found at i:10961806 original size:31 final size:31
Alignment explanation
Indices: 10961769--10961829 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
10961759 AGGGGTTTCA
* *
10961769 GATTTTAGGGGTTTGGATTTAAGGGATTTTG
1 GATTTTAAGAGTTTGGATTTAAGGGATTTTG
* *
10961800 GATTTTAAGATTTTGGATTTTAGGGATTTT
1 GATTTTAAGAGTTTGGATTTAAGGGATTTT
10961830 AGAAACCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (31 bp):
GATTTTAAGAGTTTGGATTTAAGGGATTTTG
Found at i:10961828 original size:9 final size:8
Alignment explanation
Indices: 10961769--10961831 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 8
10961759 AGGGGTTTCA
10961769 GATTTTAG
1 GATTTTAG
**
10961777 GGGTTT-G
1 GATTTTAG
*
10961784 GATTTAAGG
1 GATTTTA-G
10961793 GATTTT-G
1 GATTTTAG
*
10961800 GATTTTAA
1 GATTTTAG
10961808 GATTTT-G
1 GATTTTAG
10961815 GATTTTAGG
1 GATTTTA-G
10961824 GATTTTAG
1 GATTTTAG
10961832 AAACCCAAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
7 17 0.40
8 11 0.26
9 14 0.33
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (8 bp):
GATTTTAG
Found at i:10962109 original size:3 final size:3
Alignment explanation
Indices: 10962103--10962141 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
10962093 ATAATTATTC
10962103 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10962142 CATCTTAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10963386 original size:18 final size:19
Alignment explanation
Indices: 10963363--10963400 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
10963353 CCAATATTAT
10963363 TATTATTATT-TAAAAAAA
1 TATTATTATTATAAAAAAA
*
10963381 TATTATTATTATTAAAAAA
1 TATTATTATTATAAAAAAA
10963400 T
1 T
10963401 GTAGACCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTATTATTATAAAAAAA
Found at i:10963386 original size:21 final size:20
Alignment explanation
Indices: 10963360--10963399 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
10963350 AAACCAATAT
10963360 TATTATTATTATTTAAAAAAA
1 TATTATTATTA-TTAAAAAAA
10963381 TATTATTATTATTAAAAAA
1 TATTATTATTATTAAAAAA
10963400 TGTAGACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTATTATTATTAAAAAAA
Found at i:10963769 original size:145 final size:142
Alignment explanation
Indices: 10963508--10963970 Score: 570
Period size: 145 Copynumber: 3.2 Consensus size: 142
10963498 AGCTAACTAA
* ** * * *
10963508 ATAAAAGCGATTGAGATTAAATCGTAAGTTAGGAAC-ATAAGAATGATCGGGATTAAATCATGAG
1 ATAAAAGCGATTGAGATTAAATCGCAAGTTAAAAACTATAGGAATGA-CTGGATTAAACCATGAG
* *
10963572 TCAGAGATTAACGACAACTGAGACTGAATTGCAAGTCAGAGAAATAAAAACGACTGAGATTAAAC
65 TCAGAGATTAACGACAACTGGGACTGAA-TACAAGTCAGAGAAATAAAAACGACTGAGATTAAAC
*
10963637 CGCAAGTCGGAGAG
129 CGTAAGTCGGAGAG
* *
10963651 ATAAAAGTGATTGGGATTAAATCGCAAGTTGAAAAACTATAGGAATGACTGGAATTAAACCATGA
1 ATAAAAGCGATTGAGATTAAATCGCAAGTT-AAAAACTATAGGAATGACTGG-ATTAAACCATGA
* * * *
10963716 GTCAGAGATTAACGACAACTGGGACTGAATCACGAGTGAGAGAAATAAAAACGATTGGGATTAAA
64 GTCAGAGATTAACGACAACTGGGACTGAAT-ACAAGTCAGAGAAATAAAAACGACTGAGATTAAA
* *
10963781 TCGTAAGTCGAAGAG
128 CCGTAAGTCGGAGAG
** * *
10963796 ATAAAAGTAATTGAGATTAAACCGCAAGTTAAGAAACTATAGAAATGACTGGATTAAACCATGAG
1 ATAAAAGCGATTGAGATTAAATCGCAAGTTAA-AAACTATAGGAATGACTGGATTAAACCATGAG
* * * * *
10963861 TCAGAGATTAATGATAACTGGGACTGAATAGCAAGTCAAAAAAATAAAAATGACTGAGATTAAAC
65 TCAGAGATTAACGACAACTGGGACTGAATA-CAAGTCAGAGAAATAAAAACGACTGAGATTAAAC
* *
10963926 CGTAAGTCAGAAAG
129 CGTAAGTCGGAGAG
* **
10963940 -TAAAAACGACCGAGATTAAATCGCAAGTTAA
1 ATAAAAGCGATTGAGATTAAATCGCAAGTTAA
10963971 TAAAAATGAC
Statistics
Matches: 274, Mismatches: 40, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
143 53 0.19
144 87 0.32
145 134 0.49
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21
Consensus pattern (142 bp):
ATAAAAGCGATTGAGATTAAATCGCAAGTTAAAAACTATAGGAATGACTGGATTAAACCATGAGT
CAGAGATTAACGACAACTGGGACTGAATACAAGTCAGAGAAATAAAAACGACTGAGATTAAACCG
TAAGTCGGAGAG
Found at i:10963944 original size:35 final size:35
Alignment explanation
Indices: 10963756--10964075 Score: 134
Period size: 36 Copynumber: 9.1 Consensus size: 35
10963746 CACGAGTGAG
* * *
10963756 AGAAA-TAAAAACGATTGGGATTAAATCGTAAGTC
1 AGAAAGTAAAAATGACTGGGATTAAACCGTAAGTC
* * * * * *
10963790 -GAAGAGATAAAAGTAATTGAGATTAAACCGCAAGTTA
1 AGAA-AG-TAAAAATGACTGGGATTAAACCGTAAG-TC
* * *
10963827 AGAAACTATAGAAATGACT-GGATTAAACCATGAGTC
1 AGAAAGTA-A-AAATGACTGGGATTAAACCGTAAGTC
* * ** * * * ** *
10963863 AGAGATTAATGATAACTGGGACTGAATAGCAAGTC
1 AGAAAGTAAAAATGACTGGGATTAAACCGTAAGTC
* * *
10963898 AAAAAAATAAAAATGACTGAGATTAAACCGTAAGTC
1 -AGAAAGTAAAAATGACTGGGATTAAACCGTAAGTC
* * * * *
10963934 AGAAAGTAAAAACGACCGAGATTAAATCGCAAGT-
1 AGAAAGTAAAAATGACTGGGATTAAACCGTAAGTC
*
10963968 --TAA-TAAAAATGACTGGGATTAAACCGTAAGTC
1 AGAAAGTAAAAATGACTGGGATTAAACCGTAAGTC
* * * * *
10964000 AGAGAGATAAAAGTG-TTGGGATTAAACCGCAAGTTA
1 AGAAAG-TAAAAATGACTGGGATTAAACCGTAAG-TC
* * * *
10964036 AGAAACTATAGGAATGACTGGGATTAAACCATGAGTC
1 AGAAAGTA-A-AAATGACTGGGATTAAACCGTAAGTC
10964073 AGA
1 AGA
10964076 GATTAATGAC
Statistics
Matches: 201, Mismatches: 67, Indels: 33
0.67 0.22 0.11
Matches are distributed among these distances:
31 23 0.11
32 2 0.01
33 3 0.01
34 7 0.03
35 57 0.28
36 66 0.33
37 21 0.10
38 22 0.11
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (35 bp):
AGAAAGTAAAAATGACTGGGATTAAACCGTAAGTC
Found at i:10963988 original size:31 final size:32
Alignment explanation
Indices: 10963901--10964033 Score: 99
Period size: 35 Copynumber: 4.0 Consensus size: 32
10963891 GCAAGTCAAA
*
10963901 AAAATAAAAATGACTGAGATTAAACCGTAAGT
1 AAAATAAAAATGACTGAGATTAAACCGCAAGT
* * *
10963933 CAGAAAGTAAAAACGACCGAGATTAAATCGCAAGT
1 -A-AAA-TAAAAATGACTGAGATTAAACCGCAAGT
* * *
10963968 -TAATAAAAATGACTGGGATTAAACCGTAAGT
1 AAAATAAAAATGACTGAGATTAAACCGCAAGT
* * *
10963999 CAGAGAGATAAAAGTG-TTGGGATTAAACCGCAAGT
1 -A-A-A-ATAAAAATGACTGAGATTAAACCGCAAGT
10964034 TAAGAAACTA
Statistics
Matches: 79, Mismatches: 14, Indels: 12
0.75 0.13 0.11
Matches are distributed among these distances:
31 23 0.29
32 2 0.03
33 1 0.01
34 3 0.04
35 42 0.53
36 8 0.10
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (32 bp):
AAAATAAAAATGACTGAGATTAAACCGCAAGT
Found at i:10963991 original size:66 final size:67
Alignment explanation
Indices: 10963902--10964176 Score: 205
Period size: 66 Copynumber: 4.0 Consensus size: 67
10963892 CAAGTCAAAA
10963902 AAATAAAAATGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAGATTAAATCGCAAG
1 AAATAAAAATGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAGATTAAATCGCAAG
10963967 TT
66 TT
* * ** ** * *
10963969 -AATAAAAATGACTGGGATTAAACCGTAAGTCAGAGAGATAAAAGTG-TTGGGATTAAACCGCAA
1 AAATAAAAATGACTGAGATTAAACCGTAAGTCAGAAAG-TAAAAACGACCGAGATTAAATCGCAA
10964032 GTT
65 GTT
* * * * * * ** * * * * *
10964035 AAGAAACTATAGGAATGACTGGGATTAAACCATGAGTCAGAGATTAATGACAACTGGGACTGAAT
1 ---AAA-TA-A-AAATGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAGATTAAAT
*
10964100 AGCAAGTT
60 CGCAAGTT
* * *
10964108 AAAGAAATAAAAACGACTGAGATT-AACCGTAAGTCAGAAAGTAAAAGCGATCGAGATTAAATCG
1 ----AAATAAAAATGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAGATTAAATCG
10964172 CAAGT
62 CAAGT
10964177 CAATAAGTAA
Statistics
Matches: 159, Mismatches: 39, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
66 51 0.32
67 6 0.04
70 33 0.21
71 13 0.08
72 5 0.03
73 45 0.28
74 6 0.04
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.20
Consensus pattern (67 bp):
AAATAAAAATGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAGATTAAATCGCAAG
TT
Found at i:10964170 original size:209 final size:210
Alignment explanation
Indices: 10963759--10964182 Score: 692
Period size: 210 Copynumber: 2.0 Consensus size: 210
10963749 GAGTGAGAGA
* *
10963759 AATAAAAACGATTGGGATTAAATCGTAAGTCGAAGAGATAAAAGTAATTGAGATTAAACCGCAAG
1 AATAAAAACGACTGGGATTAAACCGTAAGTCGAAGAGATAAAAGTAATTGAGATTAAACCGCAAG
*
10963824 TTAAGAAACTATAGAAATGACTGGATTAAACCATGAGTCAGAGATTAATGATAACTGGGACTGAA
66 TTAAGAAACTATAGAAATGACTGGATTAAACCATGAGTCAGAGATTAATGACAACTGGGACTGAA
*
10963889 TAGCAAGTCAAAAAAATAAAAATGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAG
131 TAGCAAGTCAAAAAAATAAAAACGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAG
*
10963954 ATTAAATCGCAAGTT
196 ATTAAATCGCAAGTC
* * *
10963969 AATAAAAATGACTGGGATTAAACCGTAAGTC-AGAGAGATAAAAGT-GTTGGGATTAAACCGCAA
1 AATAAAAACGACTGGGATTAAACCGTAAGTCGA-AGAGATAAAAGTAATTGAGATTAAACCGCAA
*
10964032 GTTAAGAAACTATAGGAATGACTGGGATTAAACCATGAGTCAGAGATTAATGACAACTGGGACTG
65 GTTAAGAAACTATAGAAATGACT-GGATTAAACCATGAGTCAGAGATTAATGACAACTGGGACTG
* * * *
10964097 AATAGCAAGTTAAAGAAATAAAAACGACTGAGATT-AACCGTAAGTCAGAAAGTAAAAGCGATCG
129 AATAGCAAGTCAAAAAAATAAAAACGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCG
10964161 AGATTAAATCGCAAGTC
194 AGATTAAATCGCAAGTC
10964178 AATAA
1 AATAA
10964183 GTAAAGAATA
Statistics
Matches: 199, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
209 87 0.44
210 112 0.56
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (210 bp):
AATAAAAACGACTGGGATTAAACCGTAAGTCGAAGAGATAAAAGTAATTGAGATTAAACCGCAAG
TTAAGAAACTATAGAAATGACTGGATTAAACCATGAGTCAGAGATTAATGACAACTGGGACTGAA
TAGCAAGTCAAAAAAATAAAAACGACTGAGATTAAACCGTAAGTCAGAAAGTAAAAACGACCGAG
ATTAAATCGCAAGTC
Found at i:10964398 original size:36 final size:36
Alignment explanation
Indices: 10964357--10964427 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
10964347 AAAGTCTTAT
* * *
10964357 AGAATCGATTGGAATAATACCGTAAGTCAAAATTAA
1 AGAATCGATCGGAATAATACCGAAAATCAAAATTAA
* *
10964393 AGAATCGATCGGGATAATATCGAAAATCAAAATTA
1 AGAATCGATCGGAATAATACCGAAAATCAAAATTA
10964428 TGCCCGGAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.24
Consensus pattern (36 bp):
AGAATCGATCGGAATAATACCGAAAATCAAAATTAA
Found at i:10964662 original size:34 final size:34
Alignment explanation
Indices: 10964617--10964700 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
10964607 AAATACTAAG
* *
10964617 GATCAAGATTAAATCATGAATCAAAAAATAATGA
1 GATCGAGATTAAATCATGAATCAAAAAATAAAGA
* *
10964651 GATCGAGATTAAATCATGAATCAGAGAATAAAGA
1 GATCGAGATTAAATCATGAATCAAAAAATAAAGA
* * *
10964685 GACCGAAAATAAATCA
1 GATCGAGATTAAATCA
10964701 CGAGTTAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.54, C:0.11, G:0.15, T:0.20
Consensus pattern (34 bp):
GATCGAGATTAAATCATGAATCAAAAAATAAAGA
Found at i:10964669 original size:19 final size:18
Alignment explanation
Indices: 10964622--10964682 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
10964612 CTAAGGATCA
10964622 AGATTAAATCATGAATC-
1 AGATTAAATCATGAATCG
* *
10964639 A-A-AAAATAATGAGATCG
1 AGATTAAATCATGA-ATCG
10964656 AGATTAAATCATGAATCAG
1 AGATTAAATCATGAATC-G
*
10964675 AGAATAAA
1 AGATTAAA
10964683 GAGACCGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 8 0.24
16 4 0.12
17 2 0.06
18 4 0.12
19 16 0.47
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (18 bp):
AGATTAAATCATGAATCG
Found at i:10966225 original size:15 final size:15
Alignment explanation
Indices: 10966205--10966258 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
10966195 TTTATTTTGT
10966205 TTTTTTTCTTTTATG
1 TTTTTTTCTTTTATG
*
10966220 TTTTTTTATTTTATG
1 TTTTTTTCTTTTATG
*
10966235 -TTTTTT-TTGTAT-
1 TTTTTTTCTTTTATG
10966247 TTTTTTTCTTTT
1 TTTTTTTCTTTT
10966259 TTTCTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 11 0.32
14 9 0.26
15 14 0.41
ACGTcount: A:0.07, C:0.04, G:0.06, T:0.83
Consensus pattern (15 bp):
TTTTTTTCTTTTATG
Found at i:10966260 original size:11 final size:11
Alignment explanation
Indices: 10966204--10966272 Score: 52
Period size: 11 Copynumber: 6.5 Consensus size: 11
10966194 ATTTATTTTG
10966204 TTTTTTTTC-T
1 TTTTTTTTCTT
* *
10966214 TTTATGTT-TT
1 TTTTTTTTCTT
* * *
10966224 TTTATTTTATG
1 TTTTTTTTCTT
* *
10966235 TTTTTTTTGTA
1 TTTTTTTTCTT
10966246 TTTTTTTTCTT
1 TTTTTTTTCTT
*
10966257 TTTTTCTTCTT
1 TTTTTTTTCTT
10966268 TTTTT
1 TTTTT
10966273 AAGCAAAATA
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
10 14 0.30
11 33 0.70
ACGTcount: A:0.06, C:0.06, G:0.04, T:0.84
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:10977816 original size:14 final size:14
Alignment explanation
Indices: 10977797--10977838 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
10977787 TTGAGGTTTG
*
10977797 GGGTTTTGATTTAA
1 GGGTTTGGATTTAA
10977811 GGGTTTGGATTTTAA
1 GGGTTTGGA-TTTAA
10977826 GAGGTTTGGATTT
1 G-GGTTTGGATTT
10977839 GAAAGTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 8 0.32
15 9 0.36
16 8 0.32
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (14 bp):
GGGTTTGGATTTAA
Found at i:10977833 original size:16 final size:15
Alignment explanation
Indices: 10977797--10977987 Score: 63
Period size: 16 Copynumber: 12.4 Consensus size: 15
10977787 TTGAGGTTTG
*
10977797 GGGTTTTGA-TTTAA
1 GGGTTTGGATTTTAA
10977811 GGGTTTGGATTTTAA
1 GGGTTTGGATTTTAA
*
10977826 GAGGTTTGGATTTGAA
1 G-GGTTTGGATTTTAA
* ** *
10977842 -AGTTTAAAGGTTT-A
1 GGGTTTGGA-TTTTAA
* * *
10977856 GGATTTCAGATTTTGGGA
1 GGGTTT-GGATTTT--AA
* *
10977874 GGTTTTGAATTTTAA
1 GGGTTTGGATTTTAA
**
10977889 GGGTTTCAAATTTTAA
1 GGGTTT-GGATTTTAA
10977905 GGGTTTGGA-TTTAA
1 GGGTTTGGATTTTAA
*
10977919 GGAATTTTGGATTTTTAA
1 GG--GTTTGGA-TTTTAA
* *
10977937 GAGTTTCGAATTTT-A
1 GGGTTT-GGATTTTAA
*
10977952 GGATTTTGGATTTT--
1 GG-GTTTGGATTTTAA
*
10977966 GGATTTTGGATTTTAA
1 GG-GTTTGGATTTTAA
10977982 GGGTTT
1 GGGTTT
10977988 TAGAAACCCA
Statistics
Matches: 133, Mismatches: 27, Indels: 33
0.69 0.14 0.17
Matches are distributed among these distances:
14 35 0.26
15 32 0.24
16 47 0.35
17 7 0.05
18 12 0.09
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.47
Consensus pattern (15 bp):
GGGTTTGGATTTTAA
Found at i:10977935 original size:32 final size:32
Alignment explanation
Indices: 10977899--10977965 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
10977889 GGGTTTCAAA
* *
10977899 TTTTAAGGGTTT-GGATTTAAGGAATTTTGGAT
1 TTTTAAGAGTTTCGAATTTAAGG-ATTTTGGAT
*
10977931 TTTTAAGAGTTTCGAATTTTAGGATTTTGGAT
1 TTTTAAGAGTTTCGAATTTAAGGATTTTGGAT
10977963 TTT
1 TTT
10977966 GGATTTTGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 23 0.74
33 8 0.26
ACGTcount: A:0.24, C:0.01, G:0.24, T:0.51
Consensus pattern (32 bp):
TTTTAAGAGTTTCGAATTTAAGGATTTTGGAT
Found at i:10977935 original size:48 final size:45
Alignment explanation
Indices: 10977876--10977987 Score: 136
Period size: 48 Copynumber: 2.4 Consensus size: 45
10977866 TTTTGGGAGG
*
10977876 TTTTGAATTTTAAGGGTTTCAAATTTTAAGG-GTTTGGATTTAAGGAA
1 TTTTGGATTTTAAGGGTTTCAAATTTT-AGGAGTTTGGATTT-AGG-A
* * * *
10977923 TTTTGGATTTTTAAGAGTTTCGAATTTTAGGATTTTGGATTTTGGA
1 TTTTGGA-TTTTAAGGGTTTCAAATTTTAGGAGTTTGGATTTAGGA
10977969 TTTTGGATTTTAAGGGTTT
1 TTTTGGATTTTAAGGGTTT
10977988 TAGAAACCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
45 11 0.19
46 8 0.14
47 11 0.19
48 27 0.47
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (45 bp):
TTTTGGATTTTAAGGGTTTCAAATTTTAGGAGTTTGGATTTAGGA
Found at i:10977964 original size:7 final size:7
Alignment explanation
Indices: 10977946--10977979 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
10977936 AGAGTTTCGA
10977946 ATTTTAGG
1 ATTTT-GG
10977954 ATTTTGG
1 ATTTTGG
10977961 ATTTTGG
1 ATTTTGG
10977968 ATTTTGG
1 ATTTTGG
10977975 ATTTT
1 ATTTT
10977980 AAGGGTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.81
8 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (7 bp):
ATTTTGG
Found at i:10977971 original size:14 final size:15
Alignment explanation
Indices: 10977908--10977980 Score: 76
Period size: 14 Copynumber: 4.7 Consensus size: 15
10977898 ATTTTAAGGG
*
10977908 TTTGGATTTAAGGAAT
1 TTTGGATTTTAGG-AT
*
10977924 TTTGGATTTTTAAGAGT
1 TTTGGA-TTTTAGGA-T
* *
10977941 TTCGAATTTTAGGAT
1 TTTGGATTTTAGGAT
10977956 TTTGGATTTT-GGAT
1 TTTGGATTTTAGGAT
10977970 TTTGGATTTTA
1 TTTGGATTTTA
10977981 AGGGTTTTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
14 14 0.30
15 9 0.19
16 14 0.30
17 10 0.21
ACGTcount: A:0.23, C:0.01, G:0.23, T:0.52
Consensus pattern (15 bp):
TTTGGATTTTAGGAT
Done.