Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 63 of 106
Found at i:11423425 original size:3 final size:3
Alignment explanation
Indices: 11423417--11423443 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
11423407 CCTAAGCTTT
11423417 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
11423444 CAACAACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:11425044 original size:31 final size:31
Alignment explanation
Indices: 11425009--11425067 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
11424999 TCTTTTTTTC
* *
11425009 TATTAAATAAAATGAAAATTAACTAAAAAAT
1 TATTAAATAAAATAAAAATGAACTAAAAAAT
*
11425040 TATTAAATAAAATAAAAATGAATTAAAA
1 TATTAAATAAAATAAAAATGAACTAAAA
11425068 TAAAAAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (31 bp):
TATTAAATAAAATAAAAATGAACTAAAAAAT
Found at i:11425539 original size:21 final size:21
Alignment explanation
Indices: 11425500--11425539 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
11425490 GGATTAATCT
* *
11425500 TTTTTAAAAAATAATTAAAAA
1 TTTTTAAAAAAGAAATAAAAA
*
11425521 TTTTTAATAAAGAAATAAA
1 TTTTTAAAAAAGAAATAAA
11425540 GGTGAAGCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TTTTTAAAAAAGAAATAAAAA
Found at i:11426200 original size:18 final size:18
Alignment explanation
Indices: 11426179--11426213 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11426169 TAAATATAAA
*
11426179 AAATATGTTAAACGTGTT
1 AAATATATTAAACGTGTT
11426197 AAATATATTAAACGTGT
1 AAATATATTAAACGTGT
11426214 ATTCGTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (18 bp):
AAATATATTAAACGTGTT
Found at i:11426626 original size:86 final size:87
Alignment explanation
Indices: 11426529--11426705 Score: 293
Period size: 88 Copynumber: 2.0 Consensus size: 87
11426519 AAATTATATG
* *
11426529 TTATAAAAGCAAAAC-AAAAATTATTTTAAATAACATTTATACTGATAAAATATTATATAATATT
1 TTATAAAAGCAAAACAAAAAATTATTCTAAATAACATTTATACTAATAAAATATTATATAATATT
11426593 ATCTAAATAACATTATAGGATT
66 ATCTAAATAACATTATAGGATT
* * *
11426615 TTATAAAAGCAAAACAAAAAAATTATTCTAAATAATATTTATAGTAATAAAATATTATATAATTT
1 TTATAAAAGCAAAAC-AAAAAATTATTCTAAATAACATTTATACTAATAAAATATTATATAATAT
11426680 TATCTAAATAACATTATAGGATT
65 TATCTAAATAACATTATAGGATT
11426703 TTA
1 TTA
11426706 ACCCTAAACT
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
86 15 0.18
88 69 0.82
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.38
Consensus pattern (87 bp):
TTATAAAAGCAAAACAAAAAATTATTCTAAATAACATTTATACTAATAAAATATTATATAATATT
ATCTAAATAACATTATAGGATT
Found at i:11428110 original size:11 final size:11
Alignment explanation
Indices: 11428094--11428133 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
11428084 AGCAATATCT
11428094 AACAAATCTCA
1 AACAAATCTCA
*
11428105 AACAAATCTCT
1 AACAAATCTCA
*
11428116 AACAAATCTTA
1 AACAAATCTCA
11428127 AACAAAT
1 AACAAAT
11428134 TTCTTATGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (11 bp):
AACAAATCTCA
Found at i:11428116 original size:22 final size:22
Alignment explanation
Indices: 11428091--11428133 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
11428081 TCAAGCAATA
11428091 TCTAACAAATCTCAAACAAATC
1 TCTAACAAATCTCAAACAAATC
*
11428113 TCTAACAAATCTTAAACAAAT
1 TCTAACAAATCTCAAACAAAT
11428134 TTCTTATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (22 bp):
TCTAACAAATCTCAAACAAATC
Found at i:11430778 original size:80 final size:80
Alignment explanation
Indices: 11430625--11430783 Score: 246
Period size: 80 Copynumber: 2.0 Consensus size: 80
11430615 AGTTTAGGGT
* *
11430625 TAAAATCTTATAATGTTATTTAGATAAAATAATATAATACTTTGTTACTATAAATGTTATTTAGA
1 TAAAATCTTATAATGTTATTTAGATAAAATAATATAATACTTTATTACTATAAATGTTATTTAAA
**
11430690 ATTTTTTTTCTTTTA
66 ATAATTTTTCTTTTA
* * *
11430705 TAAAATCTTATAATGTTATTTAGATAAAATTATATAATATTTTATTATTATAAATGTTATTTAAA
1 TAAAATCTTATAATGTTATTTAGATAAAATAATATAATACTTTATTACTATAAATGTTATTTAAA
*
11430770 ATAATTTTTGTTTT
66 ATAATTTTTCTTTT
11430784 GTTTTTATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 71 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (80 bp):
TAAAATCTTATAATGTTATTTAGATAAAATAATATAATACTTTATTACTATAAATGTTATTTAAA
ATAATTTTTCTTTTA
Found at i:11431150 original size:31 final size:31
Alignment explanation
Indices: 11431093--11431152 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
11431083 ATTTTATAAA
* * *
11431093 ATAAAGTATATAAAATATTTTAAATAAATGT
1 ATAAAGTACATAAAAGATTCTAAATAAATGT
11431124 ATAAAGTACATAAAAGA-TCTAGAATAAAT
1 ATAAAGTACATAAAAGATTCTA-AATAAAT
11431153 ATACTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 22 0.88
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (31 bp):
ATAAAGTACATAAAAGATTCTAAATAAATGT
Found at i:11444734 original size:17 final size:17
Alignment explanation
Indices: 11444712--11444753 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
11444702 ACGATATAAC
11444712 ATAAAAATTAAAATATT
1 ATAAAAATTAAAATATT
* *
11444729 ATAAAATTTTAAATATT
1 ATAAAAATTAAAATATT
*
11444746 ACAAAAAT
1 ATAAAAAT
11444754 ATTTTCTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAAAAATTAAAATATT
Found at i:11444756 original size:28 final size:28
Alignment explanation
Indices: 11444721--11444823 Score: 75
Period size: 30 Copynumber: 3.7 Consensus size: 28
11444711 CATAAAAATT
11444721 AAAATATTATAAAATTTTAAATATTACA
1 AAAATATTATAAAATTTTAAATATTACA
* ** *
11444749 AAAATATTTTCTAAAACATAAAATATTACA
1 AAAATA--TTATAAAATTTTAAATATTACA
* * *** *
11444779 AAAATTTTCTAAAAACCTAAAAATTA-A
1 AAAATATTATAAAATTTTAAATATTACA
*
11444806 AAAATATGA-AAAATTTTA
1 AAAATATTATAAAATTTTA
11444824 TAAAAATTTC
Statistics
Matches: 57, Mismatches: 16, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
26 6 0.11
27 7 0.12
28 21 0.37
30 23 0.40
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (28 bp):
AAAATATTATAAAATTTTAAATATTACA
Found at i:11444773 original size:30 final size:31
Alignment explanation
Indices: 11444739--11444812 Score: 104
Period size: 29 Copynumber: 2.5 Consensus size: 31
11444729 ATAAAATTTT
11444739 AAATATTACAAAAATATTTTCT-AAAACATA
1 AAATATTACAAAAATATTTTCTAAAAACATA
*
11444769 AAATATTAC-AAAA-ATTTTCTAAAAACCTA
1 AAATATTACAAAAATATTTTCTAAAAACATA
11444798 AAA-ATTA-AAAAATAT
1 AAATATTACAAAAATAT
11444813 GAAAAATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 15 0.38
29 16 0.40
30 9 0.22
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31
Consensus pattern (31 bp):
AAATATTACAAAAATATTTTCTAAAAACATA
Found at i:11444847 original size:37 final size:36
Alignment explanation
Indices: 11444778--11444848 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
11444768 AAAATATTAC
* *
11444778 AAAAATTTTCTAAAAACCTAAAAATTAAAAAATATG
1 AAAAATTTTATAAAAACCTAAAAAATAAAAAATATG
**
11444814 AAAAATTTTATAAAAATTTCAAAAAATAAAAAATA
1 AAAAATTTTATAAAAACCT-AAAAAATAAAAAATA
11444849 ATAAAATCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 16 0.53
37 14 0.47
ACGTcount: A:0.65, C:0.06, G:0.01, T:0.28
Consensus pattern (36 bp):
AAAAATTTTATAAAAACCTAAAAAATAAAAAATATG
Found at i:11444855 original size:36 final size:35
Alignment explanation
Indices: 11444759--11444854 Score: 93
Period size: 36 Copynumber: 2.6 Consensus size: 35
11444749 AAAATATTTT
* * * *
11444759 CTAAAACATAAAATATTACAAAAATTTTCTAAAAAC
1 CTAAAAAATAAAA-AATATAAAAATTTTATAAAAAC
* *
11444795 CTAAAAATTAAAAAATATGAAAAATTTTATAAAAAT
1 CTAAAAAATAAAAAATAT-AAAAATTTTATAAAAAC
*
11444831 TTCAAAAAATAAAAAATAATAAAA
1 CT-AAAAAATAAAAAAT-ATAAAA
11444855 TCAAATATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
35 3 0.06
36 27 0.55
37 17 0.35
38 2 0.04
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (35 bp):
CTAAAAAATAAAAAATATAAAAATTTTATAAAAAC
Found at i:11444949 original size:31 final size:31
Alignment explanation
Indices: 11444904--11444970 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
11444894 ACAAAAAACA
*
11444904 AAAATTTTCAAAAAAATGAAATTTAAAATATT
1 AAAATATTCAAAAAAAT-AAATTTAAAATATT
* *
11444936 AAAATATTCAAAAAAATAAATTTAATATTTT
1 AAAATATTCAAAAAAATAAATTTAAAATATT
11444967 AAAA
1 AAAA
11444971 AATAGAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 16 0.50
32 16 0.50
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.34
Consensus pattern (31 bp):
AAAATATTCAAAAAAATAAATTTAAAATATT
Found at i:11445232 original size:28 final size:28
Alignment explanation
Indices: 11445201--11445255 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
11445191 TATAATTATT
*
11445201 AAATTAAAATAATACAAAAATTAAATTC
1 AAATCAAAATAATACAAAAATTAAATTC
**
11445229 AAATCATTATAATACAAAAATTAAATT
1 AAATCAAAATAATACAAAAATTAAATT
11445256 GTAAGTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (28 bp):
AAATCAAAATAATACAAAAATTAAATTC
Found at i:11445251 original size:14 final size:14
Alignment explanation
Indices: 11445209--11445251 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
11445199 TTAAATTAAA
11445209 ATAATACAAAAATT
1 ATAATACAAAAATT
* *
11445223 A-AATTCAAATCATT
1 ATAATACAAA-AATT
11445237 ATAATACAAAAATT
1 ATAATACAAAAATT
11445251 A
1 A
11445252 AATTGTAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
13 7 0.30
14 9 0.39
15 7 0.30
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATACAAAAATT
Found at i:11457446 original size:23 final size:23
Alignment explanation
Indices: 11457391--11457469 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 23
11457381 AAGACAAAAC
11457391 TTATATAAAATT-TAT-AATATTT
1 TTAT-TAAAATTATATCAATATTT
* *
11457413 ATCTATAAAAATTATGTCAATATTT
1 -T-TATTAAAATTATATCAATATTT
* *
11457438 TTATTAAAAATATATCAA-A-AT
1 TTATTAAAATTATATCAATATTT
11457459 TTATTAAAATT
1 TTATTAAAATT
11457470 TTATATACCT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
21 11 0.24
22 1 0.02
23 21 0.46
24 6 0.13
25 7 0.15
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (23 bp):
TTATTAAAATTATATCAATATTT
Found at i:11457969 original size:15 final size:14
Alignment explanation
Indices: 11457942--11457968 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11457932 ATATTTTTAA
11457942 ATTCAAAAATTTTG
1 ATTCAAAAATTTTG
11457956 ATTCAAAAATTTT
1 ATTCAAAAATTTT
11457969 TTAAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (14 bp):
ATTCAAAAATTTTG
Found at i:11462829 original size:13 final size:13
Alignment explanation
Indices: 11462811--11462838 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
11462801 AATTAGGATC
11462811 TTATAAGATATAA
1 TTATAAGATATAA
11462824 TTATAAGATATAA
1 TTATAAGATATAA
11462837 TT
1 TT
11462839 CTTTTTCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (13 bp):
TTATAAGATATAA
Found at i:11464675 original size:65 final size:65
Alignment explanation
Indices: 11464571--11464701 Score: 217
Period size: 65 Copynumber: 2.0 Consensus size: 65
11464561 AGAAAAAATA
* * *
11464571 TATAATTGCTTTCCATGACTCAATTAGTGTTCAAAAACTACTTGTAAAAAGGCTAGAATCCTAAT
1 TATAATTCCTTTCCATGACTCAATTAATGTTCAAAAACTACTTGCAAAAAGGCTAGAATCCTAAT
**
11464636 TATAATTCCTTTCCATGACTCAATTAATGTTTGAAAACTACTTGCAAAAAGGCTAGAATCCTAAT
1 TATAATTCCTTTCCATGACTCAATTAATGTTCAAAAACTACTTGCAAAAAGGCTAGAATCCTAAT
11464701 T
1 T
11464702 CACTAATAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (65 bp):
TATAATTCCTTTCCATGACTCAATTAATGTTCAAAAACTACTTGCAAAAAGGCTAGAATCCTAAT
Found at i:11465717 original size:369 final size:370
Alignment explanation
Indices: 11465036--11466033 Score: 1689
Period size: 369 Copynumber: 2.7 Consensus size: 370
11465026 ATTGTACCTA
11465036 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCC-GAGCATTCACCCTTCC
1 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGA-CATTCACCCTTCC
11465100 GGTGTCCCGGATCAGCCTGATCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
65 GGTGTCCCGGATCAGCCT-ATCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
*
11465165 CGTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGATGTGAACCCTTTTA
129 CGTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
11465230 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACAT
194 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACAT
* * * * *
11465295 TCTCTCGCACTCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCTTCGA
259 TCCCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGA
** *
11465360 GGTGCTTGGCGTGGATCGAACGGTTTAGAGCTGGCTCTGATACCACT
324 GACGCTCGGCGTGGATCGAACGGTTTAGAGCTGGCTCTGATACCACT
11465407 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGACATTCACCCTTCCG
1 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGACATTCACCCTTCCG
* * *
11465472 GCGTCCCAGATCAGCCT-TCTGTC-TCGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
66 GTGTCCCGGATCAGCCTATC-GCCAT-GGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
* * * *
11465535 C-TGACCTCACGGTTTTGTCCTATAAAAGGCGCCTCACAAGGCAGAGGTGGTGTGAACCCTTTTA
129 CGTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
* *
11465599 TACCCCAGTGACCTTCCTATTATGTTCGATATGGGATTCAGGACTCCCCCTTGGGTCCGTGACAT
194 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACAT
11465664 TCCCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGA
259 TCCCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGA
*
11465729 GACGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
324 GACGCTCGGCGTGGATCGAACGGTTTAGAGCTGGCTCTGATACCACT
* * *
11465776 TGTCACGGGTCGAGACTCAAGCTCCGAACCTGCGCGGCTCCGGGACCAGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGACATTCACCCTTCCG
* *
11465841 GTGTCTCGGATCGGCCTGATCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 GTGTCCCGGATCAGCCT-ATCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
11465906 GTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTAT
130 GTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTAT
* *
11465971 ACCCCAGTGACCTTCCTATTATGTTCGATGTGAGATTCAGGACTCTCCCTTAGGTCCGTGACA
195 ACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACA
11466034 CCTACACTAG
Statistics
Matches: 585, Mismatches: 35, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
369 302 0.52
370 82 0.14
371 199 0.34
372 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.24
Consensus pattern (370 bp):
TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGACATTCACCCTTCCG
GTGTCCCGGATCAGCCTATCGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCG
TGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
CCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACATTC
CCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGAGA
CGCTCGGCGTGGATCGAACGGTTTAGAGCTGGCTCTGATACCACT
Found at i:11467215 original size:22 final size:22
Alignment explanation
Indices: 11467187--11467230 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
11467177 CTAAATCTTC
*
11467187 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
11467209 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
11467231 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:11470940 original size:23 final size:24
Alignment explanation
Indices: 11470884--11470942 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
11470874 AAAGGGTTCG
* *
11470884 GCAATGAAGGCTTAAACAAGATTC
1 GCAATGAAGGCCTAAACAAGAGTC
11470908 GACAATGAAGGCCTAAA-AA-AGTC
1 G-CAATGAAGGCCTAAACAAGAGTC
11470931 AGCAATGAAGGC
1 -GCAATGAAGGC
11470943 TGAAAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 13 0.42
24 4 0.13
25 14 0.45
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (24 bp):
GCAATGAAGGCCTAAACAAGAGTC
Found at i:11474878 original size:29 final size:26
Alignment explanation
Indices: 11474836--11474932 Score: 72
Period size: 29 Copynumber: 3.5 Consensus size: 26
11474826 TATGAATATG
*
11474836 TTATTTTTTATTTTTATTAAATTTAT
1 TTATATTTTATTTTTATTAAATTTAT
* *
11474862 TTATAAATATTTATTTTAAATAATATTT-T
1 TTAT--AT-TTTATTTTTATTAA-ATTTAT
11474891 TTATATTTTATTATTT-TTAAATTATATT
1 TTATATTTTATT-TTTATTAAATT-TA-T
*
11474919 ATTATATTATATTT
1 -TTATATTTTATTT
11474933 AAAATTATCA
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
25 3 0.05
26 14 0.25
27 4 0.07
28 3 0.05
29 28 0.50
30 4 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (26 bp):
TTATATTTTATTTTTATTAAATTTAT
Found at i:11474907 original size:16 final size:16
Alignment explanation
Indices: 11474888--11474932 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
11474878 TAAATAATAT
11474888 TTTTTATATTTTATTA
1 TTTTTATATTTTATTA
* *
11474904 TTTTTAAATTATATTA
1 TTTTTATATTTTATTA
11474920 TTATATTATATTT
1 TT-T-TTATATTT
11474933 AAAATTATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 16 0.70
17 1 0.04
18 6 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTATATTTTATTA
Found at i:11474926 original size:24 final size:25
Alignment explanation
Indices: 11474894--11474940 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
11474884 ATATTTTTTA
* *
11474894 TATTTTATTAT-TTTTAAATTATAT
1 TATTATATTATATTTAAAATTATAT
11474918 TATTATATTATATTTAAAATTAT
1 TATTATATTATATTTAAAATTAT
11474941 CAAATGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
TATTATATTATATTTAAAATTATAT
Found at i:11475973 original size:19 final size:21
Alignment explanation
Indices: 11475949--11475988 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
11475939 TTTTTTATAA
11475949 AAAAATCAT-AAT-TTAAAAT
1 AAAAATCATAAATATTAAAAT
*
11475968 AAAAATTATAAATATTAAAAT
1 AAAAATCATAAATATTAAAAT
11475989 TTGAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATCATAAATATTAAAAT
Found at i:11476597 original size:16 final size:16
Alignment explanation
Indices: 11476554--11476605 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
11476544 AATAAATACT
11476554 AAAAATTAAAAGATAAA
1 AAAAATTAAAA-ATAAA
** * *
11476571 AAAGGTGAAAATTAAA
1 AAAAATTAAAAATAAA
11476587 AAAAATTAAAAATAAA
1 AAAAATTAAAAATAAA
11476603 AAA
1 AAA
11476606 TGAGAAAAAC
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (16 bp):
AAAAATTAAAAATAAA
Found at i:11476750 original size:24 final size:26
Alignment explanation
Indices: 11476723--11476772 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11476713 TATATACGTG
11476723 TAAAATTAAATA-A-ATAATAAAATA
1 TAAAATTAAATACATATAATAAAATA
**
11476747 TAAAATTCTATACATATAATAAAATA
1 TAAAATTAAATACATATAATAAAATA
11476773 GCTCTAGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 1 0.05
26 11 0.50
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (26 bp):
TAAAATTAAATACATATAATAAAATA
Found at i:11479318 original size:26 final size:25
Alignment explanation
Indices: 11479289--11479343 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
11479279 AAAATTTTTA
* *
11479289 AAATAATTTTATTAATTTATTATAAT
1 AAATAATTATATTAAATTATTA-AAT
*
11479315 AAATTATTATATTAAATTATTAAAT
1 AAATAATTATATTAAATTATTAAAT
11479340 AAAT
1 AAAT
11479344 GAATAGATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
AAATAATTATATTAAATTATTAAAT
Found at i:11479323 original size:13 final size:13
Alignment explanation
Indices: 11479305--11479343 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
11479295 TTTTATTAAT
11479305 TTATTATAATAAA
1 TTATTATAATAAA
*
11479318 TTATTATATTAAA
1 TTATTATAATAAA
11479331 TTATTA-AATAAA
1 TTATTATAATAAA
11479343 T
1 T
11479344 GAATAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TTATTATAATAAA
Found at i:11479370 original size:12 final size:12
Alignment explanation
Indices: 11479311--11479382 Score: 51
Period size: 12 Copynumber: 6.0 Consensus size: 12
11479301 TAATTTATTA
*
11479311 TAATAAATTATT
1 TAATAAATAATT
* *
11479323 ATATTAAATTATT
1 -TAATAAATAATT
*
11479336 AAATAAATGAA--
1 TAATAAAT-AATT
11479347 TAGATAAA-AATT
1 TA-ATAAATAATT
11479359 TAATAAATAATT
1 TAATAAATAATT
*
11479371 GAATAAATAATT
1 TAATAAATAATT
11479383 CTAGTTATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
10 2 0.04
11 6 0.12
12 28 0.58
13 12 0.25
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (12 bp):
TAATAAATAATT
Found at i:11479376 original size:23 final size:24
Alignment explanation
Indices: 11479327--11479382 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
11479317 ATTATTATAT
* *
11479327 TAAATTATTAAATAAATGAATAGA
1 TAAATAATTTAATAAATGAATAGA
*
11479351 TAAA-AATTTAATAAAT-AATTGAA
1 TAAATAATTTAATAAATGAATAG-A
11479374 TAAATAATT
1 TAAATAATT
11479383 CTAGTTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 4 0.15
23 15 0.56
24 8 0.30
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (24 bp):
TAAATAATTTAATAAATGAATAGA
Found at i:11481092 original size:176 final size:176
Alignment explanation
Indices: 11480764--11481116 Score: 566
Period size: 176 Copynumber: 2.0 Consensus size: 176
11480754 ATTGTTGACT
* * * *
11480764 TTACCAATGTCCTAAATTTTTTGTCCACATGATAAAAAAAGATGATATGGCAAAATTTTTTGCTA
1 TTACCAATGTCCAAAATTTTTTGTCCACATGATAAAAAAAGATGATATGACAAAAATTTTTGCCA
* *
11480829 TGTCAACATTTTTTCTCGTCAACTTTTTTAATTTATATGACCTATCCCTGTACTTTAATCAAATG
66 TGTCAACATTTTTTCTCGTCAACTTTTTTAATTTATATGACCTATCCCCGTACTTTAATCAAATA
*
11480894 ACAGAATTAGTCTCTCTATATTAACGTGTTTAAATTTGATCTCATA
131 ACAAAATTAGTCTCTCTATATTAACGTGTTTAAATTTGATCTCATA
* *
11480940 TTACCAATGTACCAAAATTTTTTGTCCACATGGTAAAAAATA-ATGATATGATAAAAATTTTTGC
1 TTACCAATGT-CCAAAATTTTTTGTCCACATGATAAAAAA-AGATGATATGACAAAAATTTTTGC
* *
11481004 CATGTCAACATTTTTTCTCGTCAAC-TTTTTAATTTATATGACTTATCCCCGTACTTTAGTCAAA
64 CATGTCAACATTTTTTCTCGTCAACTTTTTTAATTTATATGACCTATCCCCGTACTTTAATCAAA
*
11481068 TAACAAAATTAGTCTCTTTATATTAACGTGTTTAAATTTGATCTCATA
129 TAACAAAATTAGTCTCTCTATATTAACGTGTTTAAATTTGATCTCATA
11481116 T
1 T
11481117 ATCAATTAAT
Statistics
Matches: 163, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
176 92 0.56
177 70 0.43
178 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (176 bp):
TTACCAATGTCCAAAATTTTTTGTCCACATGATAAAAAAAGATGATATGACAAAAATTTTTGCCA
TGTCAACATTTTTTCTCGTCAACTTTTTTAATTTATATGACCTATCCCCGTACTTTAATCAAATA
ACAAAATTAGTCTCTCTATATTAACGTGTTTAAATTTGATCTCATA
Found at i:11481338 original size:13 final size:15
Alignment explanation
Indices: 11481322--11481354 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
11481312 TTTTTATTGT
11481322 TTTTTATTT-TTT-A
1 TTTTTATTTCTTTCA
11481335 TTTTTATTTCTTTCA
1 TTTTTATTTCTTTCA
11481350 TTTTT
1 TTTTT
11481355 TGTTAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTATTTCTTTCA
Found at i:11481342 original size:23 final size:22
Alignment explanation
Indices: 11481312--11481355 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
11481302 ATTATGTCTT
* *
11481312 TTTTTATTGTTTTTTATTTTTTA
1 TTTTTATT-TCTTTCATTTTTTA
11481335 TTTTTATTTCTTTCATTTTTT
1 TTTTTATTTCTTTCATTTTTT
11481356 GTTAATTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.11, C:0.05, G:0.02, T:0.82
Consensus pattern (22 bp):
TTTTTATTTCTTTCATTTTTTA
Found at i:11491765 original size:28 final size:28
Alignment explanation
Indices: 11491712--11491766 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
11491702 ATATTATTGA
* *
11491712 ATTATTTTTGTTTTTATTATTCTATTTC
1 ATTATTTTTATTTTTATAATTCTATTTC
*
11491740 ATTATTTTTTATTTTTA-AATTTTATTT
1 ATTA-TTTTTATTTTTATAATTCTATTT
11491767 TAATTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (28 bp):
ATTATTTTTATTTTTATAATTCTATTTC
Found at i:11492099 original size:36 final size:38
Alignment explanation
Indices: 11492045--11492118 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 38
11492035 TATTTAACAA
* * *
11492045 AAAGATAAAATT-TTTAAAATTAATAA-AATTTATTTT
1 AAAGATAAAATTCATAAAAATTAACAATAATTTATTTT
* *
11492081 AAAGATGAAATTCATAAAAATTACCAATAATTTATTTT
1 AAAGATAAAATTCATAAAAATTAACAATAATTTATTTT
11492119 TTAAGAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 11 0.35
37 10 0.32
38 10 0.32
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (38 bp):
AAAGATAAAATTCATAAAAATTAACAATAATTTATTTT
Found at i:11492277 original size:6 final size:6
Alignment explanation
Indices: 11492266--11492290 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11492256 ATAGGTAGGC
11492266 TTTTCA TTTTCA TTTTCA TTTTCA T
1 TTTTCA TTTTCA TTTTCA TTTTCA T
11492291 AAGATCCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTCA
Found at i:11494137 original size:14 final size:15
Alignment explanation
Indices: 11494110--11494146 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
11494100 AAATTTTTTT
11494110 ATTAAAATTGAATAA
1 ATTAAAATTGAATAA
11494125 ATTAAAATT-AATAA
1 ATTAAAATTGAATAA
*
11494139 ATTGAAAT
1 ATTAAAAT
11494147 ATTTCATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (15 bp):
ATTAAAATTGAATAA
Found at i:11494323 original size:165 final size:162
Alignment explanation
Indices: 11494053--11494388 Score: 469
Period size: 165 Copynumber: 2.1 Consensus size: 162
11494043 ACAGGGTAAA
* * ***
11494053 AAATAGTAAAAAAGATTTACATAAAGTTAAATAAGTGAAATTCGTAAAAATTTTTTTATTAAAAT
1 AAATAATAAAAAAGATTTACATAAACTTAAATAAGTGAAATTCGTAAAAATAAATTTATTAAAAT
* *
11494118 TGAATAAATTAAAATTAATAAATTGAAATATTTCATTATATAAATTAAACATACAAAATTTGAAA
66 TAAATAAATTAAAATTAATAAATTGAAAGATTTCATTATATAAATTAAACATACAAAATTTGAAA
*
11494183 AAA-ATTAATATATTTATCAAATATATATCTT
131 AAATATTAATATATTCATCAAATATATATCTT
*
11494214 AAATAATAAAAAAGATTTACATAAACTTAAATAAGTGAAATTTGTAAAAA-AAATTTATTAAAAA
1 AAATAATAAAAAAGATTTACATAAACTTAAATAAGTGAAATTCGTAAAAATAAATTTATT-AAAA
* * *
11494278 TTAAAAATTAAAATTAAAATTGATAAATTGAAAGATTTCATTATATAAATTAAGCATATAAAATT
65 TT--AAA-T-AAATTAAAATTAATAAATTGAAAGATTTCATTATATAAATTAAACATACAAAATT
* * *
11494343 TGAAAAAATTTTAATATATTCATCAAATATATGTTTT
126 TGAAAAAATATTAATATATTCATCAAATATATATCTT
*
11494380 TAATAATAA
1 AAATAATAA
11494389 TATCAACAAA
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
160 6 0.04
161 53 0.35
163 2 0.01
164 1 0.01
165 59 0.39
166 32 0.21
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (162 bp):
AAATAATAAAAAAGATTTACATAAACTTAAATAAGTGAAATTCGTAAAAATAAATTTATTAAAAT
TAAATAAATTAAAATTAATAAATTGAAAGATTTCATTATATAAATTAAACATACAAAATTTGAAA
AAATATTAATATATTCATCAAATATATATCTT
Found at i:11501986 original size:167 final size:167
Alignment explanation
Indices: 11501705--11502023 Score: 512
Period size: 167 Copynumber: 1.9 Consensus size: 167
11501695 CGCATGAGCT
* * * *
11501705 TATGGTTTGAGTATCGATCTATAATATATAATATCAAAGTCAGCTTTTAAAGTACTAATGATATA
1 TATGATTTGAGTATCGATCCATAATATATAATATCAAAGTCAACTTTTAAAGTACTAATAATATA
* * * * *
11501770 TCACCATTTATATTTGAGTTTTAGAGTTGCATGAACATGAAATTTGAGTCCCAATTGATGACACA
66 TCACCATTTATATCTGAATTTTACAGCTGCATGAACATGAAATTTGAGTCCCAATCGATGACACA
11501835 TATATCTAAAATTATTGTGCTTTCGTCACATAATATA
131 TATATCTAAAATTATTGTGCTTTCGTCACATAATATA
*
11501872 TATGATTTGAGTCTCGATCCATAATATATAATATCAAAGTCAACTTTTAAAGTACTAATAATATA
1 TATGATTTGAGTATCGATCCATAATATATAATATCAAAGTCAACTTTTAAAGTACTAATAATATA
* * *
11501937 TCACTATTTATATCTGAATTTTACAGCTGCATGAACCTGAAATTTGAGTCTCAATCGATGACACA
66 TCACCATTTATATCTGAATTTTACAGCTGCATGAACATGAAATTTGAGTCCCAATCGATGACACA
*
11502002 TATATCTAAAATTGTTGTGCTT
131 TATATCTAAAATTATTGTGCTT
11502024 CCGCCACAGA
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
167 138 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (167 bp):
TATGATTTGAGTATCGATCCATAATATATAATATCAAAGTCAACTTTTAAAGTACTAATAATATA
TCACCATTTATATCTGAATTTTACAGCTGCATGAACATGAAATTTGAGTCCCAATCGATGACACA
TATATCTAAAATTATTGTGCTTTCGTCACATAATATA
Found at i:11506175 original size:115 final size:115
Alignment explanation
Indices: 11505973--11506186 Score: 349
Period size: 115 Copynumber: 1.9 Consensus size: 115
11505963 TTAGCTCACA
* * *
11505973 TCAATAACCAAGAAAATTAAGCAGTTCATATTTCAAATTCAAGGTAGCAATTGTCGCAGACCAAA
1 TCAATAACCAAGAAAATTAAGCAGTTCATATTTCAAATCCAAGGGACCAATTGTCGCAGACCAAA
* * *
11506038 AATGATAATTGTACCAGTATAAATTAGACCAACAAACCCCTTCAATATAT
66 AATGACAATTCTACCAGCATAAATTAGACCAACAAACCCCTTCAATATAT
*
11506088 TCAATAACCAAGAAAATTAAGCAGTTCATATTTCAAATCCAAGGGACCAATTGAT-GCAGGCCAA
1 TCAATAACCAAGAAAATTAAGCAGTTCATATTTCAAATCCAAGGGACCAATTG-TCGCAGACCAA
11506152 AAATGACAATTCTACCAGCATAAATTAGACCAACA
65 AAATGACAATTCTACCAGCATAAATTAGACCAACA
11506187 TACCACTTGC
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
115 90 0.99
116 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (115 bp):
TCAATAACCAAGAAAATTAAGCAGTTCATATTTCAAATCCAAGGGACCAATTGTCGCAGACCAAA
AATGACAATTCTACCAGCATAAATTAGACCAACAAACCCCTTCAATATAT
Found at i:11512608 original size:22 final size:21
Alignment explanation
Indices: 11512581--11512622 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
11512571 TTAATAATTT
11512581 ATTTGAGAGAAAAATAATAAAC
1 ATTTGAGAGAAAAA-AATAAAC
* *
11512603 ATTTGAGTGATAAAAATAAA
1 ATTTGAGAGAAAAAAATAAA
11512623 ATCCCATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.57, C:0.02, G:0.14, T:0.26
Consensus pattern (21 bp):
ATTTGAGAGAAAAAAATAAAC
Found at i:11516510 original size:181 final size:181
Alignment explanation
Indices: 11516206--11516562 Score: 599
Period size: 181 Copynumber: 2.0 Consensus size: 181
11516196 TATAAATAAA
*
11516206 CTAAACACTTTAATAATAAAAGACAAAATAGTAAAACATATAAATTCTTAAGTAAAATTCATGAA
1 CTAAACACTTTAATAACAAAAGACAAAATAGTAAAACATATAAATTCTTAAGTAAAATTCATGAA
*
11516271 GTCATGACTAAAAATGAGTTACATGAAGTTTATAAATGAAAATAAAAACTAATACTCATACTATA
66 GTCATGACTAAAAATGAATTACATGAAGTTTATAAATGAAAATAAAAACTAATACTCATACTATA
* ** *
11516336 ATTTAAGAGTGCATTTGGTGCATAAAATTATGATAGAATATGATAAGATGG
131 ATTTAAAAAAGCATTTAGTGCATAAAATTATGATAGAATATGATAAGATGG
*
11516387 CTAAACACTTTAATAACAAAAGATAAAATAGTAAAACATATAAATTCTTAAGTAAAATTCATGAA
1 CTAAACACTTTAATAACAAAAGACAAAATAGTAAAACATATAAATTCTTAAGTAAAATTCATGAA
* *
11516452 GTCATGACTAAAAATGAATTACTTGAA-TATTATAAATGAAAATAAAATCTAATACTCATACTAT
66 GTCATGACTAAAAATGAATTACATGAAGT-TTATAAATGAAAATAAAAACTAATACTCATACTAT
* *
11516516 AATTTAAAAAAGCGTTTAGTGCATAAGATTATGATAGAATATGATAA
130 AATTTAAAAAAGCATTTAGTGCATAAAATTATGATAGAATATGATAA
11516563 AATGATATTA
Statistics
Matches: 164, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
180 1 0.01
181 163 0.99
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (181 bp):
CTAAACACTTTAATAACAAAAGACAAAATAGTAAAACATATAAATTCTTAAGTAAAATTCATGAA
GTCATGACTAAAAATGAATTACATGAAGTTTATAAATGAAAATAAAAACTAATACTCATACTATA
ATTTAAAAAAGCATTTAGTGCATAAAATTATGATAGAATATGATAAGATGG
Found at i:11519499 original size:21 final size:20
Alignment explanation
Indices: 11519464--11519509 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
11519454 TAACAATTAT
*
11519464 TTTTAAATTTTTTTATTAAAA
1 TTTTAAATTTTTTTA-AAAAA
11519485 TTTT-AATATTTTTTAAAAAA
1 TTTTAAAT-TTTTTTAAAAAA
11519505 TTTTA
1 TTTTA
11519510 TATAAAAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTAAATTTTTTTAAAAAA
Found at i:11524229 original size:14 final size:16
Alignment explanation
Indices: 11524210--11524242 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
11524200 AGTAGAATTG
11524210 TGTTAAATT-TAA-GA
1 TGTTAAATTGTAATGA
11524224 TGTTAAATTGTAATGA
1 TGTTAAATTGTAATGA
11524240 TGT
1 TGT
11524243 AAAACTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 3 0.18
16 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (16 bp):
TGTTAAATTGTAATGA
Found at i:11536314 original size:30 final size:29
Alignment explanation
Indices: 11536261--11536321 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
11536251 CAAAAGGAGC
* *
11536261 AGGTTAAAAAATAAACTAAGGACACCTAG
1 AGGTCAAAAAATAAACAAAGGACACCTAG
*
11536290 AGGTCAAAAAGATAATCAAAGGACACCTAG
1 AGGTCAAAAA-ATAAACAAAGGACACCTAG
11536320 AG
1 AG
11536322 CCTATAGGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.51, C:0.15, G:0.20, T:0.15
Consensus pattern (29 bp):
AGGTCAAAAAATAAACAAAGGACACCTAG
Found at i:11544714 original size:12 final size:12
Alignment explanation
Indices: 11544699--11544737 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
11544689 AGATTTTATA
11544699 TTTTTTAAAAAT
1 TTTTTTAAAAAT
* *
11544711 TTTTATAAATAT
1 TTTTTTAAAAAT
*
11544723 ATTTTTAAAAAT
1 TTTTTTAAAAAT
11544735 TTT
1 TTT
11544738 AATTTAGGTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTTTAAAAAT
Found at i:11545012 original size:13 final size:13
Alignment explanation
Indices: 11544994--11545023 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
11544984 TTTTCTTTTT
*
11544994 TTTTCTTTTTTCC
1 TTTTCTTTTTTAC
11545007 TTTTCTTTTTTAC
1 TTTTCTTTTTTAC
11545020 TTTT
1 TTTT
11545024 TTGTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTTTAC
Found at i:11546655 original size:21 final size:23
Alignment explanation
Indices: 11546630--11546678 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
11546620 TATTTTTTAA
11546630 TTTATATTT-AAAA-AATAATAT
1 TTTATATTTAAAAATAATAATAT
11546651 TTTATATTTAAAAATAATAATAT
1 TTTATATTTAAAAATAATAATAT
11546674 TTTAT
1 TTTAT
11546679 TAATTTCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 9 0.35
22 4 0.15
23 13 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTATATTTAAAAATAATAATAT
Found at i:11546679 original size:21 final size:20
Alignment explanation
Indices: 11546629--11546679 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
11546619 TTATTTTTTA
11546629 ATTTATATTTAAAAAATAAT
1 ATTTATATTTAAAAAATAAT
11546649 ATTTTATATTTAAAAATAATAAT
1 A-TTTATATTT-AAAA-AATAAT
11546672 ATTT-TATT
1 ATTTATATT
11546680 AATTTCGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.04
21 13 0.46
22 7 0.25
23 7 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTATATTTAAAAAATAAT
Found at i:11546681 original size:20 final size:20
Alignment explanation
Indices: 11546629--11546681 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
11546619 TTATTTTTTA
*
11546629 ATTTATATTTAAAAAATAAT
1 ATTTATATTAAAAAAATAAT
11546649 ATTTTATATTTAAAAATAATAAT
1 A-TTTATA-TTAAAAA-AATAAT
11546672 ATTT-TATTAA
1 ATTTATATTAA
11546682 TTTCGGATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 5 0.17
21 8 0.28
22 9 0.31
23 7 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTATATTAAAAAAATAAT
Found at i:11548231 original size:24 final size:23
Alignment explanation
Indices: 11548200--11548249 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
11548190 TGAAAAATAC
* *
11548200 TTTTTTAT-TTTTTATATTTTATA
1 TTTTTTATCTATTTA-ATGTTATA
11548223 TTTTATTATCTATTTAATGTTATA
1 TTTT-TTATCTATTTAATGTTATA
11548247 TTT
1 TTT
11548250 ATATATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 14 0.61
25 5 0.22
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTTTTATCTATTTAATGTTATA
Found at i:11548246 original size:31 final size:30
Alignment explanation
Indices: 11548211--11548285 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 30
11548201 TTTTTATTTT
*
11548211 TTATATTTTATAT-T-TTATTATCTATTTAATG
1 TTATATTTTATATGTATTA-TAT-TAATTAA-G
11548242 TTATATTTATATATGTATTATATTAATTAAG
1 TTATATTT-TATATGTATTATATTAATTAAG
11548273 TTATTATTTTATA
1 TTA-TATTTTATA
11548286 GCTTCATTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
31 16 0.41
32 16 0.41
33 4 0.10
34 3 0.08
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (30 bp):
TTATATTTTATATGTATTATATTAATTAAG
Found at i:11549613 original size:27 final size:26
Alignment explanation
Indices: 11549581--11549636 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 26
11549571 AACTTTTTAT
11549581 TAAATTATATTT-TTAAAAATAACTTCA
1 TAAATTA-ATTTATTAAAAA-AACTTCA
11549608 TAAATTAATTTACATTAAAAAAACTTCA
1 TAAATTAATTT--ATTAAAAAAACTTCA
11549636 T
1 T
11549637 CTAAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 4 0.15
27 7 0.27
28 8 0.31
29 7 0.27
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (26 bp):
TAAATTAATTTATTAAAAAAACTTCA
Found at i:11552162 original size:59 final size:57
Alignment explanation
Indices: 11552088--11552255 Score: 142
Period size: 59 Copynumber: 2.8 Consensus size: 57
11552078 TTTATATTCT
*
11552088 TATAATT-AGTTAAAATTACTATAATACCCTCTTATAATAATTATAAAATACCTTCATAA
1 TATAATTGA-TTAAAATTACTATAATACTCTCTTATAATAATTATAAAATACC-TC-TAA
* * * * * *
11552147 TATAATTGATTAAAATCACTACAATA-TCTTTTTTACCAAAATTATGAAAATACCTCTAC
1 TATAATTGATTAAAATTACTATAATACTCTCTTATA--ATAATTAT-AAAATACCTCTAA
* * * * *
11552206 TATAATCGATAAAAAATTATTATAATAGCTCTCATATTATAATTATAAAA
1 TATAATTGAT-TAAAATTACTATAATA-CTCTCTTATAATAATTATAAAA
11552256 ATCATTTTAT
Statistics
Matches: 85, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
58 6 0.07
59 37 0.44
60 29 0.34
61 8 0.09
62 5 0.06
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (57 bp):
TATAATTGATTAAAATTACTATAATACTCTCTTATAATAATTATAAAATACCTCTAA
Found at i:11553055 original size:19 final size:18
Alignment explanation
Indices: 11553009--11553061 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 18
11552999 TTAAATTATG
11553009 TATTAAATT-TTAATATA
1 TATTAAATTATTAATATA
11553026 T-TATAAA--ATTAATCATA
1 TAT-TAAATTATTAAT-ATA
*
11553043 TATTAAATTATTAAAATA
1 TATTAAATTATTAATATA
11553061 T
1 T
11553062 TCTTACCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 11
0.71 0.02 0.27
Matches are distributed among these distances:
16 6 0.21
17 13 0.45
18 5 0.17
19 5 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATTATTAATATA
Found at i:11554176 original size:18 final size:18
Alignment explanation
Indices: 11554149--11554190 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
11554139 TTAATTTAAT
*
11554149 AATT-AATCAATTATTTA
1 AATTAAATCAATTAATTA
*
11554166 AATTAAATCAATTAATTC
1 AATTAAATCAATTAATTA
11554184 AATTAAA
1 AATTAAA
11554191 ATAAAATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTAAATCAATTAATTA
Found at i:11555351 original size:3 final size:3
Alignment explanation
Indices: 11555333--11555367 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
11555323 TAATTATGAA
*
11555333 TAT TGAT TAC TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
11555368 TAAACTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:11556181 original size:20 final size:20
Alignment explanation
Indices: 11556144--11556182 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11556134 TTAATCTATT
*
11556144 AATTTTGATTTTTGATTTTA
1 AATTTTGATTTTTCATTTTA
11556164 AATTTT-ATTTATTCATTTT
1 AATTTTGATTT-TTCATTTT
11556183 TGATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (20 bp):
AATTTTGATTTTTCATTTTA
Found at i:11556442 original size:20 final size:21
Alignment explanation
Indices: 11556397--11556443 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
11556387 TATTTATCAA
*
11556397 AAAATATATTTAAAAAATTATT
1 AAAAT-TATCTAAAAAATTATT
*
11556419 -AAATTATCTAAAAACTT-TT
1 AAAATTATCTAAAAAATTATT
11556438 AAAATT
1 AAAATT
11556444 TAAATGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 16 0.73
21 4 0.18
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATTATCTAAAAAATTATT
Found at i:11557570 original size:84 final size:84
Alignment explanation
Indices: 11557437--11557591 Score: 274
Period size: 84 Copynumber: 1.8 Consensus size: 84
11557427 CTCTACAAAT
*
11557437 TTTTATTCTTCATATTTTTGTTATTGAATAAAATTTCATTTGCTATTTTTTGTAAAAGTATTATT
1 TTTTATTCTTCAAATTTTTGTTATTGAATAAAATTTCATTTGCTATTTTTTGTAAAAGTATTATT
11557502 GTTTCTTTCTTTACAGATG
66 GTTTCTTTCTTTACAGATG
* *
11557521 TTTTATTCTTCAAATTTTTGTTATTGAATAAAATTTCCTTTGCTATTTTTTGTAATAGTATTATT
1 TTTTATTCTTCAAATTTTTGTTATTGAATAAAATTTCATTTGCTATTTTTTGTAAAAGTATTATT
*
11557586 TTTTCT
66 GTTTCT
11557592 AAAATTTTGA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.59
Consensus pattern (84 bp):
TTTTATTCTTCAAATTTTTGTTATTGAATAAAATTTCATTTGCTATTTTTTGTAAAAGTATTATT
GTTTCTTTCTTTACAGATG
Found at i:11557743 original size:14 final size:14
Alignment explanation
Indices: 11557724--11557750 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11557714 ACGATATATC
11557724 TTTTTTTTCTCTTT
1 TTTTTTTTCTCTTT
11557738 TTTTTTTTCTCTT
1 TTTTTTTTCTCTT
11557751 GAAATTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTTTCTCTTT
Found at i:11560939 original size:58 final size:59
Alignment explanation
Indices: 11560876--11561260 Score: 480
Period size: 58 Copynumber: 6.4 Consensus size: 59
11560866 GTTTTTGTGC
11560876 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTGGAAATTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTCAAAAATATTTTTTGGAAATTTTATTTTTA
* *
11560934 AGGAAAATTGATA-TTTCAACTTTTCCCTAAAAAATATTTTTTGAAAATTTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTCAAAAATATTTTTTGGAAATTTT-ATTTTTA
* *
11560993 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAAAATTTTTTTTTGAAATTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTC--AAAAATATTTTTTGGAAATTTTATTTTTA
* *
11561053 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATA-TTTTTGAAAACTTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTCAAAAATATTTTTTGGAAA-TTTTATTTTTA
* *
11561111 AGGAAAATTGATACTTTCAATACTTTCAACTTTTCCTCAAAAATA-TTTTTGGAAACTTTGATTT
1 AGGAAAATTGATACTTTC-A-AC--T----TTTCCCTCAAAAATATTTTTTGGAAA-TTTTATTT
*
11561175 TCA
57 TTA
* *
11561178 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAAAACCTTTTT-GAAATTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTCAAAAATA-TTTTTTGGAAATTTTATTTTTA
*
11561236 GGGAAAATTGATACTTTCAACTTTT
1 AGGAAAATTGATACTTTCAACTTTT
11561261 TTCCAAAAAT
Statistics
Matches: 295, Mismatches: 15, Indels: 34
0.86 0.04 0.10
Matches are distributed among these distances:
57 23 0.08
58 111 0.38
59 31 0.11
60 54 0.18
61 19 0.06
62 1 0.00
63 1 0.00
65 2 0.01
66 4 0.01
67 49 0.17
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (59 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTCAAAAATATTTTTTGGAAATTTTATTTTTA
Found at i:11561137 original size:67 final size:67
Alignment explanation
Indices: 11561063--11561197 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
11561053 AGGAAAATTG
*
11561063 ATACTTTCAACTTTTCCTCAAAAATATTTTTGAAAACTTTGATTTTTAAGGAAAATTGATACTTT
1 ATACTTTCAACTTTTCCTCAAAAATATTTTTGAAAACTTTGATTTTCAAGGAAAATTGATACTTT
11561128 CA
66 CA
*
11561130 ATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTT
1 ATACTTTCAACTTTTCCTCAAAAATATTTTTGAAAACTTTGATTTTCAAGGAAAATTGATACTTT
11561195 CA
66 CA
11561197 A
1 A
11561198 CTTTTCCTCA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (67 bp):
ATACTTTCAACTTTTCCTCAAAAATATTTTTGAAAACTTTGATTTTCAAGGAAAATTGATACTTT
CA
Found at i:11561169 original size:33 final size:33
Alignment explanation
Indices: 11561065--11561169 Score: 86
Period size: 33 Copynumber: 3.2 Consensus size: 33
11561055 GAAAATTGAT
11561065 ACTTTCAACTTTTCCTCAAAAATATTTTTGAAA
1 ACTTTCAACTTTTCCTCAAAAATATTTTTGAAA
* * **** * * * *
11561098 ACTTT-GATTTTTAAGGAAAATTGATACTTTCAAT
1 ACTTTCAACTTTTCCTCAAAAAT-AT-TTTTGAAA
*
11561132 ACTTTCAACTTTTCCTCAAAAATATTTTTGGAA
1 ACTTTCAACTTTTCCTCAAAAATATTTTTGAAA
11561165 ACTTT
1 ACTTT
11561170 GATTTTCAAG
Statistics
Matches: 48, Mismatches: 21, Indels: 6
0.64 0.28 0.08
Matches are distributed among these distances:
32 10 0.21
33 16 0.33
34 12 0.25
35 10 0.21
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (33 bp):
ACTTTCAACTTTTCCTCAAAAATATTTTTGAAA
Found at i:11561373 original size:4 final size:4
Alignment explanation
Indices: 11561364--11561402 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
11561354 AACCTAATCT
* *
11561364 AATA AATA AATA AATA AATA ATAAA AATA AATA ATTA AA
1 AATA AATA AATA AATA AATA A-ATA AATA AATA AATA AA
11561403 AAAAAAACCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:11561393 original size:17 final size:16
Alignment explanation
Indices: 11561364--11561406 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
11561354 AACCTAATCT
*
11561364 AATAAATAAATAAATA
1 AATAAAAAAATAAATA
11561380 AATAATAAAAATAAATA
1 AATAA-AAAAATAAATA
*
11561397 ATTAAAAAAA
1 AATAAAAAAA
11561407 AAACCTGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAAAAATAAATA
Found at i:11561393 original size:21 final size:19
Alignment explanation
Indices: 11561367--11561409 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
11561357 CTAATCTAAT
11561367 AAATAAATAAATAAATAATAA
1 AAATAAATAAATAAA-AA-AA
*
11561388 AAATAAATAATTAAAAAAA
1 AAATAAATAAATAAAAAAA
11561407 AAA
1 AAA
11561410 CCTGGAGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 2 0.10
21 14 0.67
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (19 bp):
AAATAAATAAATAAAAAAA
Found at i:11561760 original size:20 final size:19
Alignment explanation
Indices: 11561732--11561780 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
11561722 CGGTTGAATA
* *
11561732 TTCACCGGATTTTGGGATTT
1 TTCACCGGAATCT-GGATTT
*
11561752 TTCATCGGAATCTGGATTT
1 TTCACCGGAATCTGGATTT
11561771 TTCACCGGAA
1 TTCACCGGAA
11561781 GTTCGCCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.39
Consensus pattern (19 bp):
TTCACCGGAATCTGGATTT
Found at i:11562342 original size:4 final size:4
Alignment explanation
Indices: 11562335--11562401 Score: 52
Period size: 4 Copynumber: 17.8 Consensus size: 4
11562325 ACAAAAACAA
* * * * * *
11562335 AAAT AAAT AAAT AAAT AAAT AAAG ATAT ACAT ATAT TAAT ACAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
11562382 -AAT -AAT AAAT AAAT -AAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAA
11562402 ATACATAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
3 11 0.22
4 40 0.78
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:11562413 original size:17 final size:17
Alignment explanation
Indices: 11562335--11562410 Score: 59
Period size: 16 Copynumber: 4.4 Consensus size: 17
11562325 ACAAAAACAA
11562335 AAATAAAT-A-AATAAAT
1 AAATAAATAATAAT-AAT
*
11562351 AAATAAAGATATACATATAT
1 AAATAAATA-ATA-ATA-AT
* *
11562371 TAATACATAATAATAAT
1 AAATAAATAATAATAAT
11562388 AAATAAATAATAA-AAT
1 AAATAAATAATAATAAT
*
11562404 ACATAAA
1 AAATAAA
11562411 ATACAAAAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
16 16 0.33
17 13 0.27
18 4 0.08
19 5 0.10
20 10 0.21
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (17 bp):
AAATAAATAATAATAAT
Found at i:11562431 original size:28 final size:29
Alignment explanation
Indices: 11562372--11562445 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 29
11562362 TACATATATT
* * *
11562372 AATACATAATAATAATAAATAAATAATAA
1 AATACATAATAATAATAAAGAAAGAAAAA
11562401 AATACATAA-AATACA-AAAGAAAGAAAAA
1 AATACATAATAATA-ATAAAGAAAGAAAAA
* *
11562429 AATA-AAAATAAAAATAA
1 AATACATAATAATAATAA
11562446 TACAAAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 4 0.11
28 23 0.62
29 10 0.27
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.19
Consensus pattern (29 bp):
AATACATAATAATAATAAAGAAAGAAAAA
Found at i:11562454 original size:16 final size:15
Alignment explanation
Indices: 11562377--11562459 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 15
11562367 ATATTAATAC
*
11562377 ATAATAATAATAAATAA
1 ATAATAAAAAT-AA-AA
*
11562394 ATAATAAAATACATAAA
1 ATAATAAAA-ATA-AAA
* *
11562411 ATACAAAAGAAAGAAAA
1 ATA-ATAA-AAATAAAA
11562428 A-AATAAAAATAAAA
1 ATAATAAAAATAAAA
11562442 ATAATACAAAATAAAA
1 ATAATA-AAAATAAAA
11562458 AT
1 AT
11562460 TAAATTGGGC
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 8 0.15
15 7 0.13
16 12 0.22
17 18 0.33
18 7 0.13
19 2 0.04
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (15 bp):
ATAATAAAAATAAAA
Found at i:11562459 original size:6 final size:6
Alignment explanation
Indices: 11562377--11562445 Score: 50
Period size: 6 Copynumber: 10.7 Consensus size: 6
11562367 ATATTAATAC
* * *
11562377 ATAATA ATAATAA ATAAATA ATAAAA TACATAAA ATACAAA AGAAAGA
1 ATAAAA ATAA-AA ATAAA-A ATAAAA -ATA-AAA ATA-AAA ATAAA-A
11562425 A-AAAA ATAAAA ATAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAA
11562446 TACAAAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
5 2 0.04
6 25 0.48
7 22 0.42
8 3 0.06
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:11562626 original size:9 final size:9
Alignment explanation
Indices: 11562612--11562652 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
11562602 ACATTGTCAT
11562612 TTTTTTTTA
1 TTTTTTTTA
* *
11562621 TTTTTTGTG
1 TTTTTTTTA
*
11562630 TTTTTTTTG
1 TTTTTTTTA
11562639 TTTTTTTTA
1 TTTTTTTTA
11562648 TTTTT
1 TTTTT
11562653 GACCAAAGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.88
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:11562717 original size:41 final size:41
Alignment explanation
Indices: 11562660--11562872 Score: 313
Period size: 41 Copynumber: 5.1 Consensus size: 41
11562650 TTTGACCAAA
* *
11562660 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
11562701 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
11562742 ACTCCTCTAAACAGAAGCACCACGACTTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTG-AAAAGTAAATT
*
11562785 GCTCCTCTAAACAGAGGCACCACGACTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
11562826 GCTCCTCTAAACAGAGGCA--ACGGAACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCAC-G-ACTTTGAAAAGTAAATT
11562867 GCTCCT
1 GCTCCT
11562873 TGACAATTAT
Statistics
Matches: 157, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.01
40 1 0.01
41 113 0.72
42 7 0.04
43 34 0.22
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:11562800 original size:84 final size:82
Alignment explanation
Indices: 11562661--11562872 Score: 315
Period size: 84 Copynumber: 2.6 Consensus size: 82
11562651 TTGACCAAAG
*
11562661 CTCCTCTAAACAGAGGCTCAACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 CTCCTCTAAACAGAGGCAC-ACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
11562725 ACTTTGG-AAAGTAAATTA
65 AC-TTGGAAAAGTAAATTA
*
11562743 CTCCTCTAAACAGAAGCACCACGACTTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 CTCCTCTAAACAGAGGCA-CACGAC-TTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
11562808 GACTTGGAAAAGTAAATTG
64 GACTTGGAAAAGTAAATTA
11562827 CTCCTCTAAACAGAGGCA-ACGGAACTTTGAAAAA-TAAATTGCTCCT
1 CTCCTCTAAACAGAGGCACAC-G-ACTTTGAAAAAGTAAATTGCTCCT
11562873 TGACAATTAT
Statistics
Matches: 120, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
82 35 0.29
83 19 0.16
84 66 0.55
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (82 bp):
CTCCTCTAAACAGAGGCACACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
CTTGGAAAAGTAAATTA
Found at i:11563900 original size:19 final size:18
Alignment explanation
Indices: 11563878--11563945 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
11563868 TGAGTCCTCC
11563878 TTTTTCATTCACTTTTTCT
1 TTTTTCATTCA-TTTTTCT
11563897 TTTTTCACTT--TTTTTCAT
1 TTTTTCA-TTCATTTTTC-T
11563915 TTTTTCA-TCATTTTT-T
1 TTTTTCATTCATTTTTCT
11563931 ATTTTT--TTCATTTTT
1 -TTTTTCATTCATTTTT
11563946 TCCATTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 15
0.74 0.00 0.26
Matches are distributed among these distances:
16 10 0.23
17 11 0.26
18 13 0.30
19 7 0.16
20 2 0.05
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTCATTCATTTTTCT
Found at i:11563911 original size:18 final size:18
Alignment explanation
Indices: 11563890--11563946 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
11563880 TTTCATTCAC
11563890 TTTTTCTTTTTTCAC-TT
1 TTTTTCTTTTTTCACTTT
11563907 TTTTTCATTTTTTCATCATTT
1 TTTTTC-TTTTTTCA-C-TTT
*
11563928 TTTAT-TTTTTTCA-TTT
1 TTTTTCTTTTTTCACTTT
11563944 TTT
1 TTT
11563947 CCATTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
16 6 0.17
17 6 0.17
18 8 0.23
19 9 0.26
21 6 0.17
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTTTTCACTTT
Found at i:11563919 original size:37 final size:36
Alignment explanation
Indices: 11563878--11563955 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
11563868 TGAGTCCTCC
*
11563878 TTTTTCATTCACTTTTT-CTTTTTTCACTTTTTTTCAT
1 TTTTTCA-TCACTTTTTACTTTTTTCA-TTTTTTCCAT
* *
11563915 TTTTTCATCATTTTTTATTTTTTTCATTTTTTCCAT
1 TTTTTCATCACTTTTTACTTTTTTCATTTTTTCCAT
11563951 TTTTT
1 TTTTT
11563956 ATTTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 22 0.59
37 15 0.41
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (36 bp):
TTTTTCATCACTTTTTACTTTTTTCATTTTTTCCAT
Found at i:11563951 original size:9 final size:8
Alignment explanation
Indices: 11563885--11563962 Score: 70
Period size: 8 Copynumber: 9.2 Consensus size: 8
11563875 TCCTTTTTCA
*
11563885 TTCACTTT
1 TTCATTTT
11563893 TTC-TTTT
1 TTCATTTT
11563900 TTCACTTTTT
1 TTCA--TTTT
11563910 TTCATTTT
1 TTCATTTT
11563918 TTCATCATTT
1 TTCAT--TTT
*
11563928 TTTATTTTT
1 TTCA-TTTT
11563937 TTCATTTT
1 TTCATTTT
11563945 TTCCATTTT
1 TT-CATTTT
11563954 TT-ATTTT
1 TTCATTTT
11563961 TT
1 TT
11563963 TTAAGCATAG
Statistics
Matches: 60, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
7 13 0.22
8 18 0.30
9 14 0.23
10 14 0.23
11 1 0.02
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (8 bp):
TTCATTTT
Found at i:11563952 original size:18 final size:17
Alignment explanation
Indices: 11563890--11563963 Score: 82
Period size: 17 Copynumber: 4.3 Consensus size: 17
11563880 TTTCATTCAC
11563890 TTTTTC-TTTTTTCACTT
1 TTTTTCATTTTTTCA-TT
11563907 TTTTTCATTTTTTCATCAT
1 TTTTTCATTTTTTCAT--T
11563926 TTTTT-ATTTTTTTCATT
1 TTTTTCA-TTTTTTCATT
*
11563943 TTTTCCATTTTTT-ATT
1 TTTTTCATTTTTTCATT
11563959 TTTTT
1 TTTTT
11563964 TAAGCATAGC
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
16 7 0.14
17 18 0.36
18 10 0.20
19 15 0.30
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCATTTTTTCATT
Found at i:11576918 original size:28 final size:29
Alignment explanation
Indices: 11576857--11576919 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
11576847 TATTATTTGT
* **
11576857 TATAATTATTTTAAATGTATGATTTATAA
1 TATATTTATTTTAAATGTATGAAATATAA
*
11576886 T-TATTTATTTTAAAT-TATTAAATATAA
1 TATATTTATTTTAAATGTATGAAATATAA
11576913 TATATTT
1 TATATTT
11576920 TATTATGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 10 0.34
28 18 0.62
29 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (29 bp):
TATATTTATTTTAAATGTATGAAATATAA
Found at i:11577342 original size:23 final size:22
Alignment explanation
Indices: 11577299--11577342 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
11577289 TTTTTTTAAA
**
11577299 ATTTTTAAATTTTTATATATTT
1 ATTTTTAAATTAATATATATTT
*
11577321 ATTTTATAAATTAATATTTATT
1 ATTTT-TAAATTAATATATATT
11577343 CATTAATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTTTTAAATTAATATATATTT
Found at i:11580137 original size:2 final size:2
Alignment explanation
Indices: 11580130--11580158 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11580120 ATGCTCTTGA
11580130 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11580159 GATAAATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11582693 original size:1 final size:1
Alignment explanation
Indices: 11582687--11582712 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
11582677 AAATAATTCC
11582687 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
11582713 GGGTTGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:11587028 original size:3 final size:3
Alignment explanation
Indices: 11587014--11587156 Score: 69
Period size: 3 Copynumber: 51.7 Consensus size: 3
11587004 CATTACTATG
*
11587014 TTA TTT TTA TTA TTA TTA -TA TGT- TTA -TA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * *
11587056 -CA TTA CTA TTA -TA TTA -TA TTA -TA TTA -TA TTA -CA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * *
11587097 GTA -TA TTA -TA TTA CTA CTA CTA CTA CTA CTA CTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11587143 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
11587157 TATTTTTTTC
Statistics
Matches: 116, Mismatches: 10, Indels: 28
0.75 0.06 0.18
Matches are distributed among these distances:
2 23 0.20
3 92 0.79
4 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:11587047 original size:5 final size:5
Alignment explanation
Indices: 11587037--11587109 Score: 87
Period size: 5 Copynumber: 14.6 Consensus size: 5
11587027 TATTATATGT
* *
11587037 TTATA TTATA TTATTA TTACA TTACTA TTATA TTATA TTATA TTATA TTACA
1 TTATA TTATA TTA-TA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA
*
11587089 -T-TA TTATA GTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTA
11587110 CTACTACTAC
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
3 1 0.02
4 2 0.03
5 46 0.79
6 9 0.16
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.56
Consensus pattern (5 bp):
TTATA
Found at i:11587053 original size:13 final size:13
Alignment explanation
Indices: 11587020--11587105 Score: 68
Period size: 13 Copynumber: 6.3 Consensus size: 13
11587010 TATGTTATTT
11587020 TTATTATTATTATA
1 TTATTA-TATTATA
11587034 TGT-TTATATTATA
1 T-TATTATATTATA
*
11587047 TTATTAT-TACATTA
1 TTATTATAT-TA-TA
*
11587061 CTATTATATTATA
1 TTATTATATTATA
*
11587074 TTATATTATATTACA
1 -T-TATTATATTATA
*
11587089 TTATTATAGTATA
1 TTATTATATTATA
11587102 TTAT
1 TTAT
11587106 ATTACTACTA
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
12 2 0.03
13 29 0.50
14 14 0.24
15 13 0.22
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.58
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:11587104 original size:52 final size:52
Alignment explanation
Indices: 11586999--11587112 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 52
11586989 ATTATTTTTG
* **
11586999 TATTACATTACTATGTTATTTTTATTATTATTATATGTTTATATTATATTAT
1 TATTACATTACTATGTTATTTATATTATTATTATATGTACATATTATATTAT
*
11587051 TATTACATTACTA--TTATATTATATTA-TATTATAT-TACATTATTATAGTA-
1 TATTACATTACTATGTTAT-TTATATTATTATTATATGTACA-TATTATATTAT
*
11587100 TATTATATTACTA
1 TATTACATTACTA
11587113 CTACTACTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
49 14 0.25
50 21 0.38
51 7 0.13
52 13 0.24
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (52 bp):
TATTACATTACTATGTTATTTATATTATTATTATATGTACATATTATATTAT
Found at i:11587155 original size:18 final size:17
Alignment explanation
Indices: 11587021--11587160 Score: 85
Period size: 18 Copynumber: 8.2 Consensus size: 17
11587011 ATGTTATTTT
*
11587021 TATTATTATTATATGTTTA
1 TATTATTATTAT-T-ATTA
11587040 TATTA-TATTATTATTA
1 TATTATTATTATTATTA
* *
11587056 CATTACTATTA-TATTA
1 TATTATTATTATTATTA
11587072 TATTA-TATTA-TATTA
1 TATTATTATTATTATTA
*
11587087 CATTATTA-TAGTATATTA
1 TATTATTATTA-T-TATTA
* * * *
11587105 TATTACTACTACTACTA
1 TATTATTATTATTATTA
* * *
11587122 CTACTACTACTATTATTA
1 -TATTATTATTATTATTA
11587140 TTATTATTATTATTATT-
1 -TATTATTATTATTATTA
11587157 TATT
1 TATT
11587161 TTTTTCTTTT
Statistics
Matches: 99, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
15 16 0.16
16 22 0.22
17 10 0.10
18 44 0.44
19 7 0.07
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (17 bp):
TATTATTATTATTATTA
Found at i:11588047 original size:20 final size:20
Alignment explanation
Indices: 11588001--11588048 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
11587991 TTTGATTTGA
11588001 TTTTTTATATTTTATATCTTG
1 TTTTTT-TATTTTATATCTTG
* *
11588022 ATTTTTTATTTTAT-TTTTAG
1 TTTTTTTATTTTATATCTT-G
11588042 TTTTTTT
1 TTTTTTT
11588049 TATCATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 5 0.22
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (20 bp):
TTTTTTTATTTTATATCTTG
Found at i:11588182 original size:7 final size:7
Alignment explanation
Indices: 11588170--11588203 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
11588160 TAACAAAATC
11588170 TTAAAAA
1 TTAAAAA
11588177 TTAAAAA
1 TTAAAAA
11588184 TTAAAAA
1 TTAAAAA
11588191 TTAAAAA
1 TTAAAAA
11588198 TTAAAA
1 TTAAAA
11588204 TCTTTACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TTAAAAA
Found at i:11591406 original size:29 final size:29
Alignment explanation
Indices: 11591349--11591411 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
11591339 AATAAGATAG
* * *
11591349 ATATACACGAATAGACATGACTAATACGA
1 ATATACACGAATAAACACGACTAACACGA
*
11591378 ATATACACGAATAAACACGATTAACACGA
1 ATATACACGAATAAACACGACTAACACGA
*
11591407 CTATA
1 ATATA
11591412 TACAAGAACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (29 bp):
ATATACACGAATAAACACGACTAACACGA
Found at i:11598095 original size:23 final size:22
Alignment explanation
Indices: 11598053--11598096 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
11598043 ACTATTATTT
*
11598053 GATTTATTTATTAGTTTTGTTG
1 GATTTATTTATTAGTGTTGTTG
11598075 GATTTAGTTTATGTAG-GTTGTT
1 GATTTA-TTTAT-TAGTGTTGTT
11598097 ATTAATTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 10 0.53
24 3 0.16
ACGTcount: A:0.18, C:0.00, G:0.23, T:0.59
Consensus pattern (22 bp):
GATTTATTTATTAGTGTTGTTG
Found at i:11600761 original size:120 final size:120
Alignment explanation
Indices: 11600544--11600771 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 120
11600534 TTGATTCTAT
* * *
11600544 TGTGGTTCAGTGTTTTAATCATGTTTTTGAGCTAAGTTCTAATATGTTTAATCAAAATGTAAATC
1 TGTGGTTCAGTGTTTTAATAATGTTTTAGAGCTAAATTCTAATATGTTTAATCAAAATGTAAATC
* ** *
11600609 ACATTAGACTACATTATGTTGTGGGAAGTGATGGTGAATTAAATGTTGATCCTGC
66 ACATTAGACTACATTATATTGTAAGAAATGATGGTGAATTAAATGTTGATCCTGC
* * * * *
11600664 TGTGGTTTAGTGTTTTGATAATGTTTCTAG-GCTAAATTCTGATATGTTTAATCAGAATTTAAAT
1 TGTGGTTCAGTGTTTTAATAATGTTT-TAGAGCTAAATTCTAATATGTTTAATCAAAATGTAAAT
** * *
11600728 CATGTTAGATTACATTCTATTGTAAGAAATGATGGTGAATTAAA
65 CACATTAGACTACATTATATTGTAAGAAATGATGGTGAATTAAA
11600772 CACTATTTCT
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
120 89 0.98
121 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (120 bp):
TGTGGTTCAGTGTTTTAATAATGTTTTAGAGCTAAATTCTAATATGTTTAATCAAAATGTAAATC
ACATTAGACTACATTATATTGTAAGAAATGATGGTGAATTAAATGTTGATCCTGC
Found at i:11606694 original size:25 final size:25
Alignment explanation
Indices: 11606653--11606701 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
11606643 TCTCTTTCAA
*
11606653 TACTTCTATATTATACTTATTCTAT
1 TACTTCTATATTATACTAATTCTAT
*
11606678 TACTATCTAT-TTTTACTAATTCTA
1 TACT-TCTATATTATACTAATTCTA
11606702 ATTTGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (25 bp):
TACTTCTATATTATACTAATTCTAT
Found at i:11613282 original size:17 final size:17
Alignment explanation
Indices: 11613262--11613299 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
11613252 GTTAAACAAC
*
11613262 TGTTTATGTTCT-AGTTT
1 TGTTGATGTTCTGA-TTT
11613279 TGTTGATGTTCTGATTT
1 TGTTGATGTTCTGATTT
11613296 TGTT
1 TGTT
11613300 AAAAAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.11, C:0.05, G:0.21, T:0.63
Consensus pattern (17 bp):
TGTTGATGTTCTGATTT
Found at i:11613804 original size:13 final size:13
Alignment explanation
Indices: 11613786--11613810 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11613776 ATATTAAGAA
11613786 AAACACACATTAC
1 AAACACACATTAC
11613799 AAACACACATTA
1 AAACACACATTA
11613811 TAACTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (13 bp):
AAACACACATTAC
Found at i:11618654 original size:13 final size:13
Alignment explanation
Indices: 11618636--11618660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11618626 CATCAAGCAT
11618636 ATAATAAAATAAA
1 ATAATAAAATAAA
11618649 ATAATAAAATAA
1 ATAATAAAATAA
11618661 TAAAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAATAAAATAAA
Found at i:11638558 original size:21 final size:20
Alignment explanation
Indices: 11638532--11638593 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
11638522 ATTTTTATTG
11638532 TATTTAAATAAATATGATTTA
1 TATTTAAATAAA-ATGATTTA
11638553 TATTTAAATAAAAT--TTTA
1 TATTTAAATAAAATGATTTA
11638571 T-TTTAAATTAAAGATTGATTTA
1 TATTTAAA-TAAA-A-TGATTTA
11638593 T
1 T
11638594 GTTAAATGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.17
18 9 0.25
19 1 0.03
20 3 0.08
21 12 0.33
22 5 0.14
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TATTTAAATAAAATGATTTA
Found at i:11638629 original size:30 final size:30
Alignment explanation
Indices: 11638603--11638699 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
11638593 TGTTAAATGT
*
11638603 TTATTTAGATATAAATTAAAAATTAAAAAC
1 TTATTTAGATATAAATTAAAAATTAAAAGC
* *
11638633 TTATTTAGATATAAA-TAAGAGATCAAAAGC
1 TTATTTAGATATAAATTAA-AAATTAAAAGC
* * *
11638663 TTATTTAAAAATAAATTAAAAA-TAAAATGT
1 TTATTTAGATATAAATTAAAAATTAAAA-GC
11638693 TTATTTA
1 TTATTTA
11638700 AGTACATAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
29 7 0.12
30 46 0.82
31 3 0.05
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (30 bp):
TTATTTAGATATAAATTAAAAATTAAAAGC
Found at i:11639913 original size:34 final size:34
Alignment explanation
Indices: 11639873--11639952 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
11639863 TCGATTCAAT
* * *
11639873 TTTGATCAAAATT-TTTTGCATTTGATTCAAATGA
1 TTTGATC-AAATTCTTTTACATTCGATTCAAATAA
*
11639907 TTTGATCAAATTCTTTTACATTCGATTCGAATAA
1 TTTGATCAAATTCTTTTACATTCGATTCAAATAA
* *
11639941 TTTAATTAAATT
1 TTTGATCAAATT
11639953 AACGTATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 5 0.13
34 34 0.87
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (34 bp):
TTTGATCAAATTCTTTTACATTCGATTCAAATAA
Found at i:11645575 original size:9 final size:9
Alignment explanation
Indices: 11645561--11645625 Score: 60
Period size: 10 Copynumber: 6.8 Consensus size: 9
11645551 TGTTTTGATT
11645561 TTATTTTTC
1 TTATTTTTC
11645570 TTATTTTAT-
1 TTATTTT-TC
*
11645579 TTATTTTATT
1 TTATTTT-TC
*
11645589 TTATTTATTT
1 TTATTT-TTC
11645599 TTATTTATTC
1 TTATTT-TTC
11645609 TTATTATTTC
1 TTATT-TTTC
11645619 TTATTTT
1 TTATTTT
11645626 AAATTGAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
9 18 0.35
10 31 0.61
11 2 0.04
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (9 bp):
TTATTTTTC
Found at i:11645593 original size:10 final size:10
Alignment explanation
Indices: 11645548--11645626 Score: 60
Period size: 9 Copynumber: 8.0 Consensus size: 10
11645538 TCATTCTATT
*
11645548 TTTTGTTTTGA
1 TTTTATTTT-A
11645559 TTTTATTTT-
1 TTTTATTTTA
*
11645568 TCTTATTTTA
1 TTTTATTTTA
11645578 -TTTATTTTA
1 TTTTATTTTA
11645587 TTTTA-TTTA
1 TTTTATTTTA
11645596 TTTT-TATTTA
1 TTTTAT-TTTA
11645606 TTCTTATTATT-
1 TT-TTATT-TTA
*
11645617 TCTTATTTTA
1 TTTTATTTTA
11645627 AATTGAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
9 26 0.46
10 15 0.27
11 12 0.21
12 3 0.05
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.76
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:11645607 original size:14 final size:15
Alignment explanation
Indices: 11645553--11645604 Score: 72
Period size: 14 Copynumber: 3.6 Consensus size: 15
11645543 CTATTTTTTG
*
11645553 TTTTGATTTTATTT-
1 TTTTTATTTTATTTA
*
11645567 TTCTTATTTTATTTA
1 TTTTTATTTTATTTA
11645582 -TTTTATTTTATTTA
1 TTTTTATTTTATTTA
11645596 TTTTTATTT
1 TTTTTATTT
11645605 ATTCTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 25 0.76
15 8 0.24
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTTTATTTTATTTA
Found at i:11646937 original size:18 final size:18
Alignment explanation
Indices: 11646916--11646952 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
11646906 CTTTAAAGTT
11646916 AACCTGAAATTTAGAGTC
1 AACCTGAAATTTAGAGTC
11646934 AACCTGAAATTTAGAGTC
1 AACCTGAAATTTAGAGTC
11646952 A
1 A
11646953 TGCTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (18 bp):
AACCTGAAATTTAGAGTC
Found at i:11649470 original size:1 final size:1
Alignment explanation
Indices: 11649466--11649499 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
11649456 AAAAATGATG
* *
11649466 AAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11649500 TGAAGAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:11649480 original size:11 final size:11
Alignment explanation
Indices: 11649466--11649499 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
11649456 AAAAATGATG
11649466 AAAAAA-AAAA
1 AAAAAAGAAAA
11649476 AAAAAAGAAAA
1 AAAAAAGAAAA
11649487 AAAAAAGAAAA
1 AAAAAAGAAAA
11649498 AA
1 AA
11649500 TGAAGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.26
11 17 0.74
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:11649810 original size:7 final size:7
Alignment explanation
Indices: 11649800--11649846 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
11649790 GTGCAAAAAA
11649800 AAAAAGC
1 AAAAAGC
11649807 AAAAATG-
1 AAAAA-GC
*
11649814 AAAAAGA
1 AAAAAGC
*
11649821 AAAAAAC
1 AAAAAGC
*
11649828 AAAAAGA
1 AAAAAGC
11649835 AAAAAGC
1 AAAAAGC
11649842 AAAAA
1 AAAAA
11649847 AAAAAATTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
6 1 0.03
7 31 0.94
8 1 0.03
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.02
Consensus pattern (7 bp):
AAAAAGC
Found at i:11649817 original size:14 final size:13
Alignment explanation
Indices: 11649794--11649852 Score: 59
Period size: 14 Copynumber: 4.5 Consensus size: 13
11649784 AGATGTGTGC
11649794 AAAAAA-AAAAAG
1 AAAAAACAAAAAG
**
11649806 CAAAAATGAAAAAG
1 -AAAAAACAAAAAG
11649820 AAAAAAACAAAAAG
1 -AAAAAACAAAAAG
11649834 AAAAAAGCAAAAA-
1 AAAAAA-CAAAAAG
11649847 AAAAAA
1 AAAAAA
11649853 TTGATACTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
13 17 0.43
14 23 0.57
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.02
Consensus pattern (13 bp):
AAAAAACAAAAAG
Found at i:11649823 original size:21 final size:21
Alignment explanation
Indices: 11649794--11649852 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
11649784 AGATGTGTGC
*
11649794 AAAAA-AAAAAAGCAAAAATG-
1 AAAAAGAAAAAAACAAAAA-GA
11649814 AAAAAGAAAAAAACAAAAAGA
1 AAAAAGAAAAAAACAAAAAGA
*
11649835 AAAAAGCAAAAAA-AAAAA
1 AAAAAGAAAAAAACAAAAA
11649853 TTGATACTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.31
21 24 0.69
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAAAACAAAAAGA
Found at i:11652390 original size:19 final size:19
Alignment explanation
Indices: 11652368--11652439 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
11652358 TTTCACTCTA
11652368 TTTTC-TATTTTGATTTTAT
1 TTTTCTTATTTT-ATTTTAT
11652387 TTTTCTTATTTTATTTTAT
1 TTTTCTTATTTTATTTTAT
* *
11652406 TTATTTTTA-TTTACTCTTAT
1 TT-TTCTTATTTTA-TTTTAT
*
11652426 TATTTTTTATTTTA
1 T-TTTCTTATTTTA
11652440 AATTGAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
19 18 0.39
20 23 0.50
21 5 0.11
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.75
Consensus pattern (19 bp):
TTTTCTTATTTTATTTTAT
Found at i:11652407 original size:10 final size:10
Alignment explanation
Indices: 11652373--11652439 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 10
11652363 CTCTATTTTC
11652373 TATTTTGATTT
1 TATTTT-ATTT
*
11652384 TATTTT-TCT
1 TATTTTATTT
11652393 TATTTTATTT
1 TATTTTATTT
11652403 TA-TTTATTT
1 TATTTTATTT
*
11652412 T-TATTTACTCT
1 TAT-TTTA-TTT
11652423 TATTATT-TTT
1 TATT-TTATTT
11652433 TATTTTA
1 TATTTTA
11652440 AATTGAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 15
0.70 0.06 0.23
Matches are distributed among these distances:
9 18 0.40
10 14 0.31
11 10 0.22
12 3 0.07
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.75
Consensus pattern (10 bp):
TATTTTATTT
Found at i:11652407 original size:30 final size:31
Alignment explanation
Indices: 11652366--11652439 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 31
11652356 TTTTTCACTC
* *
11652366 TATTTTCTATTTTGA-TTTTATTT-TTCTTAT
1 TATTTTTTATTTT-ATTTTTATTTACTCTTAT
11652396 T-TTATTTTA-TTTATTTTTATTTACTCTTAT
1 TATT-TTTTATTTTATTTTTATTTACTCTTAT
11652426 TATTTTTTATTTTA
1 TATTTTTTATTTTA
11652440 AATTGAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
28 1 0.03
29 13 0.35
30 17 0.46
31 6 0.16
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.74
Consensus pattern (31 bp):
TATTTTTTATTTTATTTTTATTTACTCTTAT
Found at i:11652418 original size:14 final size:15
Alignment explanation
Indices: 11652381--11652435 Score: 53
Period size: 14 Copynumber: 3.7 Consensus size: 15
11652371 TCTATTTTGA
*
11652381 TTTTATTTTTCTTA-
1 TTTTATTTATCTTAT
11652395 TTTTATTTTAT-TTAT
1 TTTTA-TTTATCTTAT
11652410 TTTTATTTACTCTTAT
1 TTTTATTTA-TCTTAT
11652426 TATTT-TTTAT
1 T-TTTATTTAT
11652436 TTTAAATTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
14 12 0.34
15 11 0.31
16 9 0.26
17 3 0.09
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTATCTTAT
Found at i:11656589 original size:2 final size:2
Alignment explanation
Indices: 11656582--11656613 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
11656572 ACTTAATTGG
*
11656582 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11656614 GTTGGTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Done.