Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 80 of 106
Found at i:15915998 original size:36 final size:36
Alignment explanation
Indices: 15915955--15916028 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
15915945 AAATACTGAA
*
15915955 TTAAGGTCAACTATGAGTCACAGTGAACTGAATTTG
1 TTAAGGTCAACCATGAGTCACAGTGAACTGAATTTG
15915991 TTAAGGTCAACCATGAGTCACAGTGAACTGAATTTG
1 TTAAGGTCAACCATGAGTCACAGTGAACTGAATTTG
15916027 TT
1 TT
15916029 TGTTGAATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (36 bp):
TTAAGGTCAACCATGAGTCACAGTGAACTGAATTTG
Found at i:15917164 original size:2 final size:2
Alignment explanation
Indices: 15917157--15917187 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15917147 GACTGGATCG
15917157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15917188 GAACAAGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15923484 original size:194 final size:194
Alignment explanation
Indices: 15923155--15923542 Score: 722
Period size: 194 Copynumber: 2.0 Consensus size: 194
15923145 GACTGGCTAA
*
15923155 AAGCTTTCTAGAAAATTTTGACATGGTTGTCAGTACTCTTCTTTCTACGTTATTCTTTTCCCTTT
1 AAGCTTTCTAGAAAATTTTGACATGGTTGTCAGTACTCTTCTTTCTACATTATTCTTTTCCCTTT
15923220 GGCCCCAATAATGCTATTACTTCACATGTACCTGTCAAACAGGTCAACAGCTTTGTTATGGACAA
66 GGCCCCAATAATGCTATTACTTCACATGTACCTGTCAAACAGGTCAACAGCTTTGTTATGGACAA
*
15923285 TTGACATGGCCAAATGACATACCCTTCATTCTACATTATTCTCTCTCACCCTTCTCCCTTGTAT
131 TTGACATGGCCAAATGACATACCCTTCATTCTACATGATTCTCTCTCACCCTTCTCCCTTGTAT
15923349 AAGCTTTCTAGAAAATTTTGACATGGTTGTCAGTACTCTTCTTTCTACATTATTCTTTTCCCTTT
1 AAGCTTTCTAGAAAATTTTGACATGGTTGTCAGTACTCTTCTTTCTACATTATTCTTTTCCCTTT
**
15923414 GGCCCCAATAATGCTATTACTTCACATGTACCTGTCAAACAGGTCAACAGCTTTGTTATGGATGA
66 GGCCCCAATAATGCTATTACTTCACATGTACCTGTCAAACAGGTCAACAGCTTTGTTATGGACAA
* *
15923479 TTGACATGGCCAAATGACATACCCTTCATTCTACATGATTCTCTCTCCCCCTTCTTCCTTGTAT
131 TTGACATGGCCAAATGACATACCCTTCATTCTACATGATTCTCTCTCACCCTTCTCCCTTGTAT
15923543 TCCCTTCTCC
Statistics
Matches: 188, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
194 188 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.38
Consensus pattern (194 bp):
AAGCTTTCTAGAAAATTTTGACATGGTTGTCAGTACTCTTCTTTCTACATTATTCTTTTCCCTTT
GGCCCCAATAATGCTATTACTTCACATGTACCTGTCAAACAGGTCAACAGCTTTGTTATGGACAA
TTGACATGGCCAAATGACATACCCTTCATTCTACATGATTCTCTCTCACCCTTCTCCCTTGTAT
Found at i:15924178 original size:24 final size:24
Alignment explanation
Indices: 15924146--15924216 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
15924136 ACATTCTCCG
*
15924146 GTTAGAAGTATAAGCAGGAGTCCT
1 GTTAGAAGTATAAGCAGGAGCCCT
**
15924170 GTTAGAAGTAGGAGCAGGAGCCCT
1 GTTAGAAGTATAAGCAGGAGCCCT
* * * *
15924194 GCTAGAAGCATCAGCAGAAGCCC
1 GTTAGAAGTATAAGCAGGAGCCC
15924217 ATTGAGGGGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.32, C:0.20, G:0.31, T:0.17
Consensus pattern (24 bp):
GTTAGAAGTATAAGCAGGAGCCCT
Found at i:15924426 original size:36 final size:36
Alignment explanation
Indices: 15924393--15924471 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
15924383 AAAAGAAGTG
*
15924393 TAAGTAGAAGTCCTGCAAGATCTTCTCGGAGAAGCA
1 TAAGTAGAAGTCCTGCAAGATCTTCTCAGAGAAGCA
* * *
15924429 TTAGCAGAAGTCCTGTAAGATCTTCTCAGAGAAGCA
1 TAAGTAGAAGTCCTGCAAGATCTTCTCAGAGAAGCA
15924465 TAAGTAG
1 TAAGTAG
15924472 GAGCTCTGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (36 bp):
TAAGTAGAAGTCCTGCAAGATCTTCTCAGAGAAGCA
Found at i:15929720 original size:13 final size:13
Alignment explanation
Indices: 15929702--15929730 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15929692 GAAAATTAAC
15929702 ATATATCGTACTA
1 ATATATCGTACTA
15929715 ATATATCGTACTA
1 ATATATCGTACTA
15929728 ATA
1 ATA
15929731 CAGATATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (13 bp):
ATATATCGTACTA
Found at i:15935133 original size:16 final size:16
Alignment explanation
Indices: 15935112--15935146 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15935102 TGTCCCGCTC
* *
15935112 TTTTTTTTTTTTTTTG
1 TTTTTTATTCTTTTTG
15935128 TTTTTTATTCTTTTTG
1 TTTTTTATTCTTTTTG
15935144 TTT
1 TTT
15935147 CCACTCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.89
Consensus pattern (16 bp):
TTTTTTATTCTTTTTG
Found at i:15945463 original size:2 final size:2
Alignment explanation
Indices: 15945458--15945491 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
15945448 TGTAAATCTA
15945458 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15945492 ACAATATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15945587 original size:21 final size:24
Alignment explanation
Indices: 15945539--15945589 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
15945529 ATTGAACAAT
* *
15945539 TTTTTTAAATGACACAAATGATAG
1 TTTTTTAAAAGACACAAATGATAA
15945563 TTTTTTAAAAGA-A-AAA-GATAA
1 TTTTTTAAAAGACACAAATGATAA
15945584 TTTTTT
1 TTTTTT
15945590 TAATTACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.40
22 3 0.12
23 1 0.04
24 11 0.44
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (24 bp):
TTTTTTAAAAGACACAAATGATAA
Found at i:15945732 original size:21 final size:21
Alignment explanation
Indices: 15945707--15945756 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
15945697 GAAATATGGG
* *
15945707 TTTTATTTTTTTAATAAATAA
1 TTTTATTTGTTTAACAAATAA
* *
15945728 TTTTAGTTGTTTACCAAATAA
1 TTTTATTTGTTTAACAAATAA
*
15945749 CTTTATTT
1 TTTTATTT
15945757 AAAAATTTAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
TTTTATTTGTTTAACAAATAA
Found at i:15950991 original size:29 final size:29
Alignment explanation
Indices: 15950930--15951004 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
15950920 ACAGCCCCTA
*
15950930 AACTATAGAGAAATGTTTAATATGATACTTG
1 AACTATA-A-AAATGTTTAATATGATACCTG
* * * *
15950961 AACTTTAAAAATTTTTAATGTGGTACCTG
1 AACTATAAAAATGTTTAATATGATACCTG
*
15950990 AACTATAAATATGTT
1 AACTATAAAAATGTT
15951005 AACCAATGTA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
29 29 0.81
30 1 0.03
31 6 0.17
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (29 bp):
AACTATAAAAATGTTTAATATGATACCTG
Found at i:15960937 original size:12 final size:12
Alignment explanation
Indices: 15960920--15960944 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15960910 ATCAATTCAA
15960920 TATAAATTTTTT
1 TATAAATTTTTT
15960932 TATAAATTTTTT
1 TATAAATTTTTT
15960944 T
1 T
15960945 CACTTAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATAAATTTTTT
Found at i:15961197 original size:18 final size:19
Alignment explanation
Indices: 15961170--15961213 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
15961160 TCAGTCAACC
*
15961170 AAAAAA-TAAT-AAATATA
1 AAAAAACTAATCAAATACA
15961187 AAAAAACTAATCAAATACA
1 AAAAAACTAATCAAATACA
*
15961206 AAACAACT
1 AAAAAACT
15961214 GGATCCCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 4 0.17
19 13 0.57
ACGTcount: A:0.70, C:0.11, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAAAACTAATCAAATACA
Found at i:15964178 original size:54 final size:54
Alignment explanation
Indices: 15964101--15964204 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
15964091 ACAAGGTCTT
* * *
15964101 TTTTACGGTTTGTGAATAGATATCAGAGATACATATATGATGCAAA-AAACCTGC
1 TTTTACGGTTTGTCAATAAATATCAGAGACACATATATGATG-AAAGAAACCTGC
*
15964155 TTTTATGGTTTGTCAATAAATATCAGAGACACATATATGATGAAAGAAAC
1 TTTTACGGTTTGTCAATAAATATCAGAGACACATATATGATGAAAGAAAC
15964205 ATATTTTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 3 0.07
54 42 0.93
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (54 bp):
TTTTACGGTTTGTCAATAAATATCAGAGACACATATATGATGAAAGAAACCTGC
Found at i:15964430 original size:22 final size:22
Alignment explanation
Indices: 15964405--15964448 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15964395 TGGTTCTTAC
15964405 AGGAAAACATACAAGCTAATAT
1 AGGAAAACATACAAGCTAATAT
*
15964427 AGGAAAACATATAAGCTAATAT
1 AGGAAAACATACAAGCTAATAT
15964449 GAAGAGTGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.14, T:0.20
Consensus pattern (22 bp):
AGGAAAACATACAAGCTAATAT
Found at i:15966351 original size:21 final size:22
Alignment explanation
Indices: 15966311--15966351 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15966301 ATTATCTTAT
15966311 ACACCAGCAGTGGAGTTTAAAA
1 ACACCAGCAGTGGAGTTTAAAA
15966333 ACACC-GCAAGTGG-GTTTAA
1 ACACCAGC-AGTGGAGTTTAA
15966352 CTGATTGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (22 bp):
ACACCAGCAGTGGAGTTTAAAA
Found at i:15968322 original size:20 final size:20
Alignment explanation
Indices: 15968294--15968345 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
15968284 TTAACAATTT
* *
15968294 TAAAAATAAAAAACTTGTAA
1 TAAATATAAAAAAATTGTAA
*
15968314 TAAATATAAAAAAATTTTAA
1 TAAATATAAAAAAATTGTAA
15968334 T-AATATTAAAAA
1 TAAATA-TAAAAA
15968346 TTACAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (20 bp):
TAAATATAAAAAAATTGTAA
Found at i:15970133 original size:16 final size:16
Alignment explanation
Indices: 15970112--15970163 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 16
15970102 TTAAACATAT
15970112 ATTTTTATTTAATTAA
1 ATTTTTATTTAATTAA
* **
15970128 ATTTTTA--AAATTTT
1 ATTTTTATTTAATTAA
15970142 ATTTTTATTTAATTAAA
1 ATTTTTATTTAATT-AA
15970159 ATTTT
1 ATTTT
15970164 GATTGAACAG
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
14 11 0.41
16 11 0.41
17 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTTTATTTAATTAA
Found at i:15970136 original size:30 final size:30
Alignment explanation
Indices: 15970088--15970163 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
15970078 TAATCAATTA
* *
15970088 TATTT-ATTAGATATTTAAACA-TATATTTT
1 TATTTAATTAAATTTTTAAA-ATTATATTTT
*
15970117 TATTTAATTAAATTTTTAAAATTTTATTTT
1 TATTTAATTAAATTTTTAAAATTATATTTT
*
15970147 TATTTAATTAAAATTTT
1 TATTTAATTAAATTTTT
15970164 GATTGAACAG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 6 0.15
30 35 0.85
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (30 bp):
TATTTAATTAAATTTTTAAAATTATATTTT
Found at i:15970259 original size:27 final size:29
Alignment explanation
Indices: 15970200--15970263 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 29
15970190 TTCTTCTAAC
*
15970200 AAAAA-TTTAATTAATAAAAATAAATATT
1 AAAAATTTTAATTAATAAAAATAAATAAT
* *
15970228 TAAAATTTTAATTAAT-TAAA-AAATAAT
1 AAAAATTTTAATTAATAAAAATAAATAAT
15970255 AAAAATTTT
1 AAAAATTTT
15970264 GATGATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 14 0.45
28 7 0.23
29 10 0.32
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAAATTTTAATTAATAAAAATAAATAAT
Found at i:15977407 original size:2 final size:2
Alignment explanation
Indices: 15977400--15977425 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15977390 CCGACTTCTT
15977400 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
15977426 CCTAAGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:15982685 original size:14 final size:14
Alignment explanation
Indices: 15982663--15982698 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
15982653 CTCTGGCTTC
15982663 TCCCTTCCTTTCCT
1 TCCCTTCCTTTCCT
*
15982677 TCTCTTCCTTTCCT
1 TCCCTTCCTTTCCT
15982691 TCCCTTCC
1 TCCCTTCC
15982699 CTTCAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (14 bp):
TCCCTTCCTTTCCT
Found at i:15984946 original size:2 final size:2
Alignment explanation
Indices: 15984939--15984963 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15984929 TTTGTCTTAA
15984939 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15984964 ATTTAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15989333 original size:15 final size:17
Alignment explanation
Indices: 15989300--15989333 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15989290 ATATAATTAT
15989300 ATAATATATATATACAA
1 ATAATATATATATACAA
15989317 ATAATATAT-TATA-AA
1 ATAATATATATATACAA
15989332 AT
1 AT
15989334 TAAAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATATATATATACAA
Found at i:15990133 original size:10 final size:10
Alignment explanation
Indices: 15990110--15990140 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
15990100 AATTTTAAAA
15990110 AATATTTTTT
1 AATATTTTTT
15990120 -ATATTTTTT
1 AATATTTTTT
15990129 AATATTTTTT
1 AATATTTTTT
15990139 AA
1 AA
15990141 CACTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
AATATTTTTT
Found at i:15990190 original size:19 final size:19
Alignment explanation
Indices: 15990168--15990212 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
15990158 AGAGAAGAGA
15990168 AAAAAAAAGGAAGAAAAAT
1 AAAAAAAAGGAAGAAAAAT
* *
15990187 AAAAAAAAGTAATAAAAAT
1 AAAAAAAAGGAAGAAAAAT
15990206 AGAAAAA
1 A-AAAAA
15990213 TTATTCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (19 bp):
AAAAAAAAGGAAGAAAAAT
Found at i:15990546 original size:23 final size:24
Alignment explanation
Indices: 15990518--15990578 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
15990508 TTATGAATTT
*
15990518 TTAAA-TATTAACAACAAAATAAA
1 TTAAATTATTAACAAAAAAATAAA
**
15990541 TTAAATTATTGTCAAAAAAATAAAA
1 TTAAATTATTAACAAAAAAAT-AAA
* *
15990566 ATAAATTAATAAC
1 TTAAATTATTAAC
15990579 TAATTAATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
23 5 0.17
24 12 0.41
25 12 0.41
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.30
Consensus pattern (24 bp):
TTAAATTATTAACAAAAAAATAAA
Found at i:16000410 original size:90 final size:90
Alignment explanation
Indices: 16000252--16000425 Score: 303
Period size: 90 Copynumber: 1.9 Consensus size: 90
16000242 GGAGCTGCGC
*
16000252 GGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGATATCAGAGCCAGCCCTAAACCGTTTGACC
1 GGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGATATCAGAGCCAGCCCTAAACCGTTCGACC
*
16000317 CACGCCAAGTACCTCGAGGCCGCGT
66 CACGCCAAGCACCTCGAGGCCGCGT
* *
16000342 GGGTTCGGAGCTTAAGTCTCGACCCGTGATAAGTGATATCAGAGCCAGCCCTAAACCGTTCGATC
1 GGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGATATCAGAGCCAGCCCTAAACCGTTCGACC
*
16000407 CACGTCAAGCACCTCGAGG
66 CACGCCAAGCACCTCGAGG
16000426 GAGGTAGGCA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (90 bp):
GGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGATATCAGAGCCAGCCCTAAACCGTTCGACC
CACGCCAAGCACCTCGAGGCCGCGT
Found at i:16009311 original size:24 final size:24
Alignment explanation
Indices: 16009284--16009330 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
16009274 ATAATGATGA
16009284 ATTTGA-AAATATTTTAACATTATG
1 ATTTGACAAATATTTTAA-ATTATG
* *
16009308 ATTTGACGAATGTTTTAAATTAT
1 ATTTGACAAATATTTTAAATTAT
16009331 CTATATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (24 bp):
ATTTGACAAATATTTTAAATTATG
Found at i:16009559 original size:17 final size:19
Alignment explanation
Indices: 16009537--16009583 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
16009527 ATGAAACGAT
16009537 TTTATATTTG-TATAT-AA
1 TTTATATTTGATATATAAA
16009554 TTTATATTTGAATATATAAA
1 TTTATATTTG-ATATATAAA
*
16009574 TATATATTTG
1 TTTATATTTG
16009584 GATTAACGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 10 0.38
19 5 0.19
20 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.55
Consensus pattern (19 bp):
TTTATATTTGATATATAAA
Found at i:16011191 original size:3 final size:3
Alignment explanation
Indices: 16011183--16011215 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
16011173 CAATTGTGTG
16011183 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
16011216 GTCAAGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:16011480 original size:26 final size:25
Alignment explanation
Indices: 16011425--16011481 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
16011415 TAATAAAGAT
* *
16011425 AATATCAAATTAATATAATATTAAA
1 AATATCAAATTAACATAATAATAAA
*
16011450 CATATCAAATTGACACA-AATAATAAA
1 AATATCAAATT-A-ACATAATAATAAA
16011476 AATATC
1 AATATC
16011482 TTAAATTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 10 0.38
26 14 0.54
27 2 0.08
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.30
Consensus pattern (25 bp):
AATATCAAATTAACATAATAATAAA
Found at i:16011994 original size:29 final size:29
Alignment explanation
Indices: 16011947--16012005 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
16011937 TTAATTTAAT
* * *
16011947 TTTAAATTTTAATATATTT-AATTGAAAA
1 TTTAAAATTTAAAATATTTAAATTAAAAA
16011975 TTTAAAATTTAAAATAATTTAAATTAAAAA
1 TTTAAAATTTAAAAT-ATTTAAATTAAAAA
16012005 T
1 T
16012006 AACTCCATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 13 0.50
29 4 0.15
30 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
TTTAAAATTTAAAATATTTAAATTAAAAA
Found at i:16012004 original size:16 final size:17
Alignment explanation
Indices: 16011973--16012007 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
16011963 TTTAATTGAA
*
16011973 AATTTAAAATTTAAAAT
1 AATTTAAAATTAAAAAT
16011990 AATTT-AAATTAAAAAT
1 AATTTAAAATTAAAAAT
16012006 AA
1 AA
16012008 CTCCATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AATTTAAAATTAAAAAT
Found at i:16012922 original size:28 final size:30
Alignment explanation
Indices: 16012890--16012945 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
16012880 TATTTTTAAG
16012890 AATAAGCTCTTA-TATTTTA-TTGTATTGT
1 AATAAGCTCTTATTATTTTATTTGTATTGT
* *
16012918 AATAAGTTTTTATTATTTTATTTGTATT
1 AATAAGCTCTTATTATTTTATTTGTATT
16012946 CAAATAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 7 0.29
30 7 0.29
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.59
Consensus pattern (30 bp):
AATAAGCTCTTATTATTTTATTTGTATTGT
Found at i:16012945 original size:30 final size:29
Alignment explanation
Indices: 16012902--16012961 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
16012892 TAAGCTCTTA
** *
16012902 TATTTTATTGTATTGTAATAAGTTTTTAT
1 TATTTTATTGTATTCAAATAAATTTTTAT
16012931 TATTTTATTTGTATTCAAATAAATTTTTAT
1 TATTTTA-TTGTATTCAAATAAATTTTTAT
16012961 T
1 T
16012962 TCAAATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.62
Consensus pattern (29 bp):
TATTTTATTGTATTCAAATAAATTTTTAT
Found at i:16012961 original size:16 final size:17
Alignment explanation
Indices: 16012937--16012970 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16012927 TTATTATTTT
16012937 ATTTGTA-TTCAAATAA
1 ATTTGTATTTCAAATAA
*
16012953 ATTTTTATTTCAAATAA
1 ATTTGTATTTCAAATAA
16012970 A
1 A
16012971 AAATTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (17 bp):
ATTTGTATTTCAAATAA
Found at i:16013824 original size:21 final size:21
Alignment explanation
Indices: 16013763--16013840 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
16013753 CAAAAAATAA
16013763 AAAACTAT-AAAAAATAATTTT
1 AAAA-TATAAAAAAATAATTTT
* *
16013784 AAAATATAAAAGTAAGAATTTT
1 AAAATATAAAA-AAATAATTTT
*
16013806 -AAATATTAAAAAAATAATTTC
1 AAAATA-TAAAAAAATAATTTT
* *
16013827 GAAACATAAAAAAA
1 AAAATATAAAAAAA
16013841 AACAAAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.06
21 27 0.57
22 17 0.36
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAATATAAAAAAATAATTTT
Found at i:16024911 original size:2 final size:2
Alignment explanation
Indices: 16024904--16024944 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
16024894 GAAATATAAA
16024904 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
16024945 AGATCATACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:16036621 original size:2 final size:2
Alignment explanation
Indices: 16036614--16036643 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
16036604 TATTTCTTCT
16036614 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16036644 ATTCATCAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:16042439 original size:550 final size:550
Alignment explanation
Indices: 16041399--16042501 Score: 2206
Period size: 550 Copynumber: 2.0 Consensus size: 550
16041389 CCAAGTACGC
16041399 ACATTAGTTAAGAAATTCTTAATTCGAGTATCACATTGAATATTTCACTATAGTTTAGGGTCATT
1 ACATTAGTTAAGAAATTCTTAATTCGAGTATCACATTGAATATTTCACTATAGTTTAGGGTCATT
16041464 CATGACATTAACCCTTAGAGGTAAATTTAATTGTGAAGTCACCTTGTTTTTACGCACATCTTCTG
66 CATGACATTAACCCTTAGAGGTAAATTTAATTGTGAAGTCACCTTGTTTTTACGCACATCTTCTG
16041529 TTTTATTGTTGTGTTGGTAAGAATTATTTACAATAGTTTCCCATTTGGACCAGTGTATTGGACCT
131 TTTTATTGTTGTGTTGGTAAGAATTATTTACAATAGTTTCCCATTTGGACCAGTGTATTGGACCT
16041594 TTTGGATTATATAACCTCAGATGCAGATCTAAAAGCAAGAGATGCCCAAAAGAAAACCCGTGCAA
196 TTTGGATTATATAACCTCAGATGCAGATCTAAAAGCAAGAGATGCCCAAAAGAAAACCCGTGCAA
16041659 AGGTTAGTCACCTAACTAATCCCTTGCTGTCCTTTTGGTTGCTTATCATCTTCATTGACAATGGA
261 AGGTTAGTCACCTAACTAATCCCTTGCTGTCCTTTTGGTTGCTTATCATCTTCATTGACAATGGA
16041724 TCTAAGCAAAGTTTCTATTCAACAAACAGATTAAGGGCAAACCAGCCCGAAACTGGGAGACAGTC
326 TCTAAGCAAAGTTTCTATTCAACAAACAGATTAAGGGCAAACCAGCCCGAAACTGGGAGACAGTC
16041789 TCAGATGAATATCAGAATGATGAGATTTCATCACCAACTTATCCTTTTATGGAGAATTCGAGTGA
391 TCAGATGAATATCAGAATGATGAGATTTCATCACCAACTTATCCTTTTATGGAGAATTCGAGTGA
16041854 TAAGGAAAAAGAATCTGAAGATCAATTCATGGAACCTGATACGCTTCTACCAGATAAACCAGTGC
456 TAAGGAAAAAGAATCTGAAGATCAATTCATGGAACCTGATACGCTTCTACCAGATAAACCAGTGC
16041919 TGATTAAATATGTTGGCCAAAAACAGGATG
521 TGATTAAATATGTTGGCCAAAAACAGGATG
16041949 ACATTAGTTAAGAAATTCTTAATTCGAGTATCACATTGAATATTTCACTATAGTTTAGGGTCATT
1 ACATTAGTTAAGAAATTCTTAATTCGAGTATCACATTGAATATTTCACTATAGTTTAGGGTCATT
16042014 CATGACATTAACCCTTAGAGGTAAATTTAATTGTGAAGTCACCTTGTTTTTACGCACATCTTCTG
66 CATGACATTAACCCTTAGAGGTAAATTTAATTGTGAAGTCACCTTGTTTTTACGCACATCTTCTG
16042079 TTTTATTGTTGTGTTGGTAAGAATTATTTACAATAGTTTCCCATTTGGACCAGTGTATTGGACCT
131 TTTTATTGTTGTGTTGGTAAGAATTATTTACAATAGTTTCCCATTTGGACCAGTGTATTGGACCT
16042144 TTTGGATTATATAACCTCAGATGCAGATCTAAAAGCAAGAGATGCCCAAAAGAAAACCCGTGCAA
196 TTTGGATTATATAACCTCAGATGCAGATCTAAAAGCAAGAGATGCCCAAAAGAAAACCCGTGCAA
16042209 AGGTTAGTCACCTAACTAATCCCTTGCTGTCCTTTTGGTTGCTTATCATCTTCATTGACAATGGA
261 AGGTTAGTCACCTAACTAATCCCTTGCTGTCCTTTTGGTTGCTTATCATCTTCATTGACAATGGA
16042274 TCTAAGCAAAGTTTCTATTCAACAAACAGATTAAGGGCAAACCAGCCCGAAACTGGGAGACAGTC
326 TCTAAGCAAAGTTTCTATTCAACAAACAGATTAAGGGCAAACCAGCCCGAAACTGGGAGACAGTC
16042339 TCAGATGAATATCAGAATGATGAGATTTCATCACCAACTTATCCTTTTATGGAGAATTCGAGTGA
391 TCAGATGAATATCAGAATGATGAGATTTCATCACCAACTTATCCTTTTATGGAGAATTCGAGTGA
16042404 TAAGGAAAAAGAATCTGAAGATCAATTCATGGAACCTGATACGCTTCTACCAGATAAACCAGTGC
456 TAAGGAAAAAGAATCTGAAGATCAATTCATGGAACCTGATACGCTTCTACCAGATAAACCAGTGC
16042469 TGATTAAATATGTTGGCCAAAAACAGGATG
521 TGATTAAATATGTTGGCCAAAAACAGGATG
16042499 ACA
1 ACA
16042502 CCTCTGATGA
Statistics
Matches: 553, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
550 553 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (550 bp):
ACATTAGTTAAGAAATTCTTAATTCGAGTATCACATTGAATATTTCACTATAGTTTAGGGTCATT
CATGACATTAACCCTTAGAGGTAAATTTAATTGTGAAGTCACCTTGTTTTTACGCACATCTTCTG
TTTTATTGTTGTGTTGGTAAGAATTATTTACAATAGTTTCCCATTTGGACCAGTGTATTGGACCT
TTTGGATTATATAACCTCAGATGCAGATCTAAAAGCAAGAGATGCCCAAAAGAAAACCCGTGCAA
AGGTTAGTCACCTAACTAATCCCTTGCTGTCCTTTTGGTTGCTTATCATCTTCATTGACAATGGA
TCTAAGCAAAGTTTCTATTCAACAAACAGATTAAGGGCAAACCAGCCCGAAACTGGGAGACAGTC
TCAGATGAATATCAGAATGATGAGATTTCATCACCAACTTATCCTTTTATGGAGAATTCGAGTGA
TAAGGAAAAAGAATCTGAAGATCAATTCATGGAACCTGATACGCTTCTACCAGATAAACCAGTGC
TGATTAAATATGTTGGCCAAAAACAGGATG
Found at i:16047419 original size:2 final size:2
Alignment explanation
Indices: 16047412--16047441 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
16047402 ACATCGGGGC
16047412 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16047442 GTGCATGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16048384 original size:2 final size:2
Alignment explanation
Indices: 16048371--16048402 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
16048361 AAATAAATAA
*
16048371 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16048403 GTTTGCTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:16053010 original size:44 final size:43
Alignment explanation
Indices: 16052940--16053035 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 43
16052930 GTCCAAAAGG
* * *
16052940 TTCAA-ATTAAATTCCTCCGTGACACTTGATAATTAAGGCAAA
1 TTCAACATTAAATTCCTCCATGACACTTGAGAATTAAGACAAA
* * *
16052982 TTCAACATTCAAATTCCTTCATGGCACTTTAGAATTAAGACAAA
1 TTCAACATT-AAATTCCTCCATGACACTTGAGAATTAAGACAAA
16053026 TTCAACATTA
1 TTCAACATTA
16053036 GGCTTGTAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 5 0.11
43 4 0.09
44 37 0.80
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (43 bp):
TTCAACATTAAATTCCTCCATGACACTTGAGAATTAAGACAAA
Found at i:16069003 original size:21 final size:21
Alignment explanation
Indices: 16068978--16069017 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
16068968 ATAAAAATTT
*
16068978 TTAAT-TTTGTATTAGTATAAA
1 TTAATCTTTGCATTA-TATAAA
16068999 TTAATCTTTGCATTATATA
1 TTAATCTTTGCATTATATA
16069018 TATATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (21 bp):
TTAATCTTTGCATTATATAAA
Found at i:16069621 original size:16 final size:17
Alignment explanation
Indices: 16069591--16069627 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
16069581 TTTTGTACAT
*
16069591 TTATTTTTTCTTTTTAA
1 TTATTTTATCTTTTTAA
16069608 TTATTTTATCTTTTT-A
1 TTATTTTATCTTTTTAA
16069624 TTAT
1 TTAT
16069628 ATTAGAACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTATTTTATCTTTTTAA
Found at i:16071714 original size:9 final size:8
Alignment explanation
Indices: 16071701--16071738 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
16071691 AATTCCAAAA
16071701 ATTTTTAT
1 ATTTTTAT
16071709 ATTTTTAT
1 ATTTTTAT
*
16071717 GTTTTTTAT
1 -ATTTTTAT
16071726 ATTTTTA-
1 ATTTTTAT
16071733 ATTTTT
1 ATTTTT
16071739 TTGGTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 6 0.22
8 14 0.52
9 7 0.26
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (8 bp):
ATTTTTAT
Found at i:16071922 original size:13 final size:13
Alignment explanation
Indices: 16071906--16071930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16071896 TTTCCAAAAT
16071906 TTTTATTTTTTTA
1 TTTTATTTTTTTA
16071919 TTTTATTTTTTT
1 TTTTATTTTTTT
16071931 CCTAAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:16071980 original size:20 final size:17
Alignment explanation
Indices: 16071940--16071972 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16071930 TCCTAAATTT
16071940 AATAAAAAAATACTAAA
1 AATAAAAAAATACTAAA
16071957 AATAAAAAAATACTAA
1 AATAAAAAAATACTAA
16071973 GAAAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (17 bp):
AATAAAAAAATACTAAA
Found at i:16072489 original size:30 final size:31
Alignment explanation
Indices: 16072433--16072494 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
16072423 GGAAACTTGC
* *
16072433 CAAAAAAGTCAACCGTCATTGAAAAATTCAT
1 CAAAAAAGTCAACAGGCATTGAAAAATTCAT
*
16072464 CAAAAAATTCAACAGGCATTG-AAAATTCAT
1 CAAAAAAGTCAACAGGCATTGAAAAATTCAT
16072494 C
1 C
16072495 GAAGTTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 10 0.36
31 18 0.64
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.23
Consensus pattern (31 bp):
CAAAAAAGTCAACAGGCATTGAAAAATTCAT
Found at i:16073292 original size:83 final size:84
Alignment explanation
Indices: 16073194--16073590 Score: 446
Period size: 83 Copynumber: 4.7 Consensus size: 84
16073184 ACGACTTTTA
* * * * * * * *
16073194 AAAAAATAAATTGCTCTTATAAACAGAGGCAACAAAAATTTAGAAAAAGAAATTACTCATTTAAA
1 AAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGAAAAATAAATGACTCCTCTAAA
*
16073259 TAGAGGTAACAGAACTTTG
66 TAGAGGCAACAGAACTTTG
* * * *
16073278 -AAAAATAAATTGCTCCTCTAAACAGAGGCAACAGAACTTTAAAAAAATAAATGGCTCCTCTAAA
1 AAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGAAAAATAAATGACTCCTCTAAA
*
16073342 CAGAGGCAACAGAACTTTG
66 TAGAGGCAACAGAACTTTG
* * * * * *
16073361 AAAAAAATAGATGGCTCATTTAAATAGAGGC--CACAACTTTGGAAAAATAAATGACTCCTCTAA
1 -AAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGAAAAATAAATGACTCCTCTAA
*
16073424 ATAGAGGCAACAAAACTTTTG
65 ATAGAGGCAACAGAAC-TTTG
*
16073445 AAAAAATAAA-TGACTCCTCTAAATAGAGGTAACAAAACTTT-GAAAAAATAAATGGA-TCCTCT
1 AAAAAATAAATTG-CTCCTCTAAATAGAGGCAACAAAACTTTAG-AAAAATAAAT-GACTCCTCT
*
16073507 AAATAGAGGCAACATAACTTTGG
63 AAATAGAGGCAACAGAACTTT-G
* * * *
16073530 AAAAAATAAATGGCTCCTCTAAATAGAGGTAACAAAACTTTTGAAAAAATAAATTACTCCT
1 AAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAG-AAAAATAAATGACTCCT
16073591 TTGACAATCA
Statistics
Matches: 269, Mismatches: 32, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
82 1 0.00
83 136 0.51
84 8 0.03
85 105 0.39
86 19 0.07
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.24
Consensus pattern (84 bp):
AAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAAACTTTAGAAAAATAAATGACTCCTCTAAA
TAGAGGCAACAGAACTTTG
Found at i:16073452 original size:168 final size:165
Alignment explanation
Indices: 16073163--16073590 Score: 493
Period size: 168 Copynumber: 2.5 Consensus size: 165
16073153 AGTAAACAAA
* * * *
16073163 GCTCTTCTAAACAGAGGCTCAAC-G-ACTTTTAAAAAAATAAATTGCTCTTATAAACAGAGGCAA
1 GCTCCTCTAAACAGAGG--CAACAGAACTTTGAAAAAAATAAATGGCTCTT-TAAATAGAGGC--
* * * * * * *
16073226 CAAAAATTTAGAAAAAGAAATTACTCATTTAAATAGAGGTAACAGAACTTTGAAAAATAAATTG-
61 CAAAACTTTGGAAAAATAAATTACTCCTCTAAATAGAGGCAACAAAACTTTGAAAAATAAA-TGA
*
16073290 CTCCTCTAAACAGAGGCAACAGAACTTTAAAAAAATAAATG
125 CTCCTCTAAACAGAGGCAACAAAACTTTAAAAAAATAAATG
* *
16073331 GCTCCTCTAAACAGAGGCAACAGAACTTTGAAAAAAATAGATGGCTCATTTAAATAGAGGCCACA
1 GCTCCTCTAAACAGAGGCAACAGAACTTTGAAAAAAATAAATGGCTC-TTTAAATAGAGGCCAAA
*
16073396 ACTTTGGAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTTGAAAAAATAAATGACTC
65 ACTTTGGAAAAATAAATTACTCCTCTAAATAGAGGCAACAAAAC-TTTG-AAAAATAAATGACTC
* * *
16073461 CTCTAAATAGAGGTAACAAAACTTTGAAAAAATAAATG
128 CTCTAAACAGAGGCAACAAAACTTTAAAAAAATAAATG
* * * * * *
16073499 GATCCTCTAAATAGAGGCAACATAACTTTGGAAAAAATAAATGGCTCCTCTAAATAGAGGTAACA
1 GCTCCTCTAAACAGAGGCAACAGAACTTTGAAAAAAATAAATGGCT-CTTTAAATAGAGG--CCA
*
16073564 AAACTTTTGAAAAAATAAATTACTCCT
63 AAAC-TTTGGAAAAATAAATTACTCCT
16073591 TTGACAATCA
Statistics
Matches: 222, Mismatches: 28, Indels: 17
0.83 0.10 0.06
Matches are distributed among these distances:
166 43 0.19
167 7 0.03
168 144 0.65
169 3 0.01
170 5 0.02
171 20 0.09
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (165 bp):
GCTCCTCTAAACAGAGGCAACAGAACTTTGAAAAAAATAAATGGCTCTTTAAATAGAGGCCAAAA
CTTTGGAAAAATAAATTACTCCTCTAAATAGAGGCAACAAAACTTTGAAAAATAAATGACTCCTC
TAAACAGAGGCAACAAAACTTTAAAAAAATAAATG
Found at i:16073457 original size:43 final size:42
Alignment explanation
Indices: 16073194--16073590 Score: 430
Period size: 43 Copynumber: 9.4 Consensus size: 42
16073184 ACGACTTTTA
* * * *
16073194 AAAAAATAAATTG-CTCTTATAAACAGAGGCAACAAAAATTT-
1 AAAAAATAAA-TGACTCCTCTAAATAGAGGCAACAAAACTTTG
* * * * * *
16073235 AGAAAAAGAAATTACTCATTTAAATAGAGGTAACAGAACTTTG
1 A-AAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTG
* * *
16073278 -AAAAATAAATTG-CTCCTCTAAACAGAGGCAACAGAACTTTA
1 AAAAAATAAA-TGACTCCTCTAAATAGAGGCAACAAAACTTTG
* * *
16073319 AAAAAATAAATGGCTCCTCTAAACAGAGGCAACAGAACTTTG
1 AAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTG
* * * * *
16073361 AAAAAAATAGATGGCTCATTTAAATAGAGGC--CACAACTTTG
1 -AAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTG
*
16073402 GAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTTG
1 AAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAAC-TTTG
*
16073445 AAAAAATAAATGACTCCTCTAAATAGAGGTAACAAAACTTTG
1 AAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTG
*
16073487 AAAAAATAAATGGA-TCCTCTAAATAGAGGCAACATAACTTTGG
1 AAAAAATAAAT-GACTCCTCTAAATAGAGGCAACAAAACTTT-G
* *
16073530 AAAAAATAAATGGCTCCTCTAAATAGAGGTAACAAAACTTTTG
1 AAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAAC-TTTG
*
16073573 AAAAAATAAATTACTCCT
1 AAAAAATAAATGACTCCT
16073591 TTGACAATCA
Statistics
Matches: 306, Mismatches: 36, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
40 25 0.08
41 45 0.15
42 114 0.37
43 119 0.39
44 3 0.01
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.24
Consensus pattern (42 bp):
AAAAAATAAATGACTCCTCTAAATAGAGGCAACAAAACTTTG
Found at i:16073770 original size:15 final size:15
Alignment explanation
Indices: 16073727--16073773 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
16073717 AATTCACTGA
*
16073727 AATTTGATTCTTAA-
1 AATTTGATTCATAAG
*
16073741 AATTTTAGTTTCATAAG
1 AA-TTT-GATTCATAAG
16073758 AATTTGATTCATAAG
1 AATTTGATTCATAAG
16073773 A
1 A
16073774 TCTCAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
14 2 0.07
15 13 0.48
16 10 0.37
17 2 0.07
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (15 bp):
AATTTGATTCATAAG
Found at i:16073872 original size:43 final size:43
Alignment explanation
Indices: 16073816--16073958 Score: 126
Period size: 43 Copynumber: 3.2 Consensus size: 43
16073806 TGTATCCACA
** **
16073816 TTCAAAGAGTCTCATTTGAATTTTGGAGATTCACATCCAAAAG
1 TTCAAAGCTTCTCATTAAAATTTTGGAGATTCACATCCAAAAG
* * *
16073859 TTCAAAGCTTCTCACATTCAACAAATTCGGTG-TTCACATCCAAAAAG
1 TTCAAAGCTTCT--CATT-AA-AATTTTGGAGATTCACATCC-AAAAG
* * * *
16073906 TTTAAAGCTTTTCGTTCAAATTTTGGAGATTCACATCCAAAAG
1 TTCAAAGCTTCTCATTAAAATTTTGGAGATTCACATCCAAAAG
*
16073949 TTTAAAGCTT
1 TTCAAAGCTT
16073959 TTTATTCGAG
Statistics
Matches: 80, Mismatches: 14, Indels: 12
0.75 0.13 0.11
Matches are distributed among these distances:
43 32 0.40
44 10 0.12
45 7 0.09
46 9 0.11
47 22 0.28
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (43 bp):
TTCAAAGCTTCTCATTAAAATTTTGGAGATTCACATCCAAAAG
Found at i:16074200 original size:22 final size:22
Alignment explanation
Indices: 16074172--16074222 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
16074162 CCCCAAAGAT
*
16074172 TCTCATTTTAAAACTTAAAAAC
1 TCTCATTTGAAAACTTAAAAAC
* *
16074194 TCTCATTTGAGAACTTAAAAAT
1 TCTCATTTGAAAACTTAAAAAC
16074216 TCTCATT
1 TCTCATT
16074223 AAAAGATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (22 bp):
TCTCATTTGAAAACTTAAAAAC
Found at i:16075466 original size:9 final size:9
Alignment explanation
Indices: 16075454--16075495 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
16075444 ATTTTCTCAC
16075454 TTTTTTATT
1 TTTTTTATT
*
16075463 TTTTTTCTT
1 TTTTTTATT
16075472 TTTTTCTATT
1 TTTTT-TATT
*
16075482 TTTTATATT
1 TTTTTTATT
16075491 TTTTT
1 TTTTT
16075496 CTTTTTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTATT
Found at i:16075483 original size:26 final size:29
Alignment explanation
Indices: 16075445--16075502 Score: 95
Period size: 27 Copynumber: 2.1 Consensus size: 29
16075435 TGAGTCTTCA
16075445 TTTTCTCACTTTTTTAT-TTTTTTTCTTT
1 TTTTCTCACTTTTTTATATTTTTTTCTTT
16075473 TTTTCT-A-TTTTTTATATTTTTTTCTTT
1 TTTTCTCACTTTTTTATATTTTTTTCTTT
16075500 TTT
1 TTT
16075503 CTTTCCTCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 8 0.28
27 15 0.52
28 6 0.21
ACGTcount: A:0.09, C:0.10, G:0.00, T:0.81
Consensus pattern (29 bp):
TTTTCTCACTTTTTTATATTTTTTTCTTT
Found at i:16075492 original size:19 final size:19
Alignment explanation
Indices: 16075454--16075502 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
16075444 ATTTTCTCAC
* *
16075454 TTTTT-TATTTTTTTTCTT
1 TTTTTCTATTTTTTATATT
16075472 TTTTTCTATTTTTTATATT
1 TTTTTCTATTTTTTATATT
16075491 TTTTTCT-TTTTT
1 TTTTTCTATTTTT
16075503 CTTTCCTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 10 0.36
19 18 0.64
ACGTcount: A:0.08, C:0.06, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTCTATTTTTTATATT
Found at i:16075501 original size:9 final size:9
Alignment explanation
Indices: 16075454--16075502 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
16075444 ATTTTCTCAC
*
16075454 TTTTTTATT
1 TTTTTTCTT
16075463 TTTTTTC-T
1 TTTTTTCTT
*
16075471 TTTTTTCTA
1 TTTTTTCTT
*
16075480 TTTTTTATAT
1 TTTTTTCT-T
16075490 TTTTTTCTT
1 TTTTTTCTT
16075499 TTTT
1 TTTT
16075503 CTTTCCTCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
8 8 0.24
9 18 0.55
10 7 0.21
ACGTcount: A:0.08, C:0.06, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:16077746 original size:27 final size:27
Alignment explanation
Indices: 16077716--16077772 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
16077706 ACAAAGTCTA
16077716 ATAACATCTACTGAACCATAAAAATTG
1 ATAACATCTACTGAACCATAAAAATTG
*
16077743 ATAACATTTACTGAACCATAAAAATTG
1 ATAACATCTACTGAACCATAAAAATTG
16077770 ATA
1 ATA
16077773 CCTTCTATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.28
Consensus pattern (27 bp):
ATAACATCTACTGAACCATAAAAATTG
Found at i:16078485 original size:23 final size:23
Alignment explanation
Indices: 16078448--16078507 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
16078438 ATGTTAAATC
*
16078448 ATGAACATGAAAATGATGCATAGA
1 ATGAA-ATGATAATGATGCATAGA
*
16078472 ATGAAATGATAATGATGCATGGA
1 ATGAAATGATAATGATGCATAGA
*
16078495 ATGATATGATAAT
1 ATGAAATGATAAT
16078508 ATGAAAATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 28 0.85
24 5 0.15
ACGTcount: A:0.47, C:0.05, G:0.22, T:0.27
Consensus pattern (23 bp):
ATGAAATGATAATGATGCATAGA
Found at i:16079991 original size:9 final size:9
Alignment explanation
Indices: 16079977--16080016 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
16079967 TTATTTCAAA
16079977 ATTTTTTAT
1 ATTTTTTAT
16079986 A-TTTTTAT
1 ATTTTTTAT
*
16079994 GTTTTTTAT
1 ATTTTTTAT
16080003 A-TTTTTA-
1 ATTTTTTAT
16080010 ATTTTTT
1 ATTTTTT
16080017 TGATTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
7 1 0.04
8 18 0.67
9 8 0.30
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:16080162 original size:26 final size:24
Alignment explanation
Indices: 16080108--16080167 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
16080098 TCCTAGGTGG
* *
16080108 AATTTTATCTAAATTTATCATTTGA
1 AATTTT-TATAAATTTATCATTGGA
16080133 AATTTTTATAAATTTCATCATTGGA
1 AATTTTTATAAATTT-ATCATTGGA
*
16080158 TAATTATTAT
1 -AATTTTTAT
16080168 TTATTTCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.27
25 14 0.47
26 8 0.27
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.52
Consensus pattern (24 bp):
AATTTTTATAAATTTATCATTGGA
Found at i:16080244 original size:21 final size:21
Alignment explanation
Indices: 16080215--16080264 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
16080205 TCTTAAATTT
* *
16080215 AATAAAAAAATA-CTAAATAA
1 AATAAAAAAATACCCAAAAAA
16080235 AATAAAAAAATACCCAAAAAA
1 AATAAAAAAATACCCAAAAAA
16080256 AATAAAAAA
1 AATAAAAAA
16080265 TGGCTCGGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (21 bp):
AATAAAAAAATACCCAAAAAA
Found at i:16080684 original size:12 final size:12
Alignment explanation
Indices: 16080667--16080693 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
16080657 AATTCAATCG
16080667 TCACCGAAAAAT
1 TCACCGAAAAAT
16080679 TCACCGAAAAAT
1 TCACCGAAAAAT
16080691 TCA
1 TCA
16080694 ACCAATGTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (12 bp):
TCACCGAAAAAT
Found at i:16086579 original size:22 final size:22
Alignment explanation
Indices: 16086553--16086596 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
16086543 AACATATTAT
* *
16086553 TTACAATTTTTTTATTATAATA
1 TTACAATTGTTTAATTATAATA
16086575 TTACAATTGTTTAATTATAATA
1 TTACAATTGTTTAATTATAATA
16086597 AAAAATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (22 bp):
TTACAATTGTTTAATTATAATA
Found at i:16096390 original size:62 final size:59
Alignment explanation
Indices: 16096313--16096456 Score: 209
Period size: 59 Copynumber: 2.4 Consensus size: 59
16096303 GCTTTTGTAA
*
16096313 AAAAAAAATTGATACTTTCAACTTTTTCCTAAAAATATATTTTTTTAAACCTTTTTATTTTT
1 AAAAAAAATTGATACTTTCAACTTTTTCCT-AAAA-AT-TTTTTTTAAACCTTTTTATTTTC
*
16096375 AAAAAAAATTGATACTTTCAATTTTTTCCTAAAAATTTTTTTTAAACCTTTTTATTTTC
1 AAAAAAAATTGATACTTTCAACTTTTTCCTAAAAATTTTTTTTAAACCTTTTTATTTTC
***
16096434 AAGGGAAATTGATAC-TTCAACTT
1 AAAAAAAATTGATACTTTCAACTT
16096457 CCCCAAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
58 7 0.09
59 34 0.45
60 2 0.03
61 4 0.05
62 29 0.38
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (59 bp):
AAAAAAAATTGATACTTTCAACTTTTTCCTAAAAATTTTTTTTAAACCTTTTTATTTTC
Found at i:16096493 original size:14 final size:15
Alignment explanation
Indices: 16096468--16096500 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
16096458 CCCAAAATAC
16096468 TTTTAGAAAATTTTA
1 TTTTAGAAAATTTTA
16096483 TTTTA-AAAATTTTA
1 TTTTAGAAAATTTTA
16096497 TTTT
1 TTTT
16096501 TAAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTAGAAAATTTTA
Found at i:16096509 original size:127 final size:130
Alignment explanation
Indices: 16096365--16096600 Score: 345
Period size: 130 Copynumber: 1.8 Consensus size: 130
16096355 TTTTAAACCT
*** **
16096365 TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTT-CCTAAAAAT-T-TTTTTTAAACCTTTT
1 TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTTAAAAAAAAATATATTTTTTAAACAATTT
*
16096427 TATTTTCAAGGGAAATTGATACTTCAAC-TTCCCCAAAATACTTTTAGAAAATTTTATTTTAAAA
66 TATTTTCAAGGGAAATTGACACTTCAACTTTCCCCAAAA-ACTTTTAGAAAATTTTATTTTAAAA
16096491 A
130 A
* * *
16096492 TTTTATTTTTAAGAAAAATTGATATTTTCAATTTTTTAAAAAAAAATATATTTTTTTAACAATTT
1 TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTTAAAAAAAAATATATTTTTTAAACAATTT
16096557 TATTTTCAAGGGAAATTGACACTTCAACTTTTCCCCAAAAACTT
66 TATTTTCAAGGGAAATTGACACTTCAAC-TTTCCCCAAAAACTT
16096601 ATTTTTTATT
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
127 35 0.37
128 6 0.06
129 1 0.01
130 39 0.41
131 4 0.04
132 10 0.11
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (130 bp):
TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTTAAAAAAAAATATATTTTTTAAACAATTT
TATTTTCAAGGGAAATTGACACTTCAACTTTCCCCAAAAACTTTTAGAAAATTTTATTTTAAAAA
Found at i:16096619 original size:127 final size:122
Alignment explanation
Indices: 16096365--16096620 Score: 291
Period size: 127 Copynumber: 2.0 Consensus size: 122
16096355 TTTTAAACCT
*** **
16096365 TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTTCCTAAAAATTTTTTTTAAACCTTTTTAT
1 TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTTAAAAAAAATTTTTTTTAAACAATTTTAT
* **
16096430 TTTCAAGGGAAATTGATACTTCAACTTCCCCAAAATACTTTTAGAAAATTTTATTTTAAAAA
66 TTTCAAGGGAAATTGACACTTCAACTTCCCCAAAATACTTTT-----ATTTTATTAAAAAAA
* * *
16096492 TTTTATTTTTAAGAAAAATTGATATTTTCAATTTTTTAAAAAAAAATATATTTTTTTAACAATTT
1 TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTT-AAAAAAAAT-T-TTTTTTAAACAATTT
16096557 TATTTTCAAGGGAAATTGACACTTCAACTTTTCCCCAAAA-ACTTATT-TTTTATTAAAGAAAA
63 TATTTTCAAGGGAAATTGACACTTCAAC--TTCCCCAAAATACTT-TTATTTTATTAAA-AAAA
16096619 TT
1 TT
16096621 GATACATTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
126 8 0.07
127 41 0.37
128 6 0.05
129 1 0.01
130 39 0.35
131 4 0.04
132 12 0.11
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (122 bp):
TTTTATTTTTAAAAAAAATTGATACTTTCAATTTTTTAAAAAAAATTTTTTTTAAACAATTTTAT
TTTCAAGGGAAATTGACACTTCAACTTCCCCAAAATACTTTTATTTTATTAAAAAAA
Found at i:16096670 original size:57 final size:59
Alignment explanation
Indices: 16096601--16096727 Score: 181
Period size: 57 Copynumber: 2.2 Consensus size: 59
16096591 CCAAAAACTT
*
16096601 ATTTT-TTATTAAAGAAAATTGATACATTCAAC-TTTCCTTCAAAAATA-TTTTTTT-AAA
1 ATTTTATT-TTAAAAAAAATTGATACATTCAACTTTTCC-TCAAAAATATTTTTTTTGAAA
* *
16096658 ATTTTATTTTAAAAAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTTGAAA
1 ATTTTATTTTAAAAAAAATTGATACATTCAACTTTTCCTCAAAAATATTTTTTTTGAAA
16096717 ATTTTATTTTA
1 ATTTTATTTTA
16096728 GGAAAATCAT
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
57 35 0.56
58 14 0.22
59 14 0.22
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.50
Consensus pattern (59 bp):
ATTTTATTTTAAAAAAAATTGATACATTCAACTTTTCCTCAAAAATATTTTTTTTGAAA
Found at i:16096750 original size:9 final size:10
Alignment explanation
Indices: 16096736--16096774 Score: 53
Period size: 9 Copynumber: 3.8 Consensus size: 10
16096726 TAGGAAAATC
16096736 ATTAAAATAA
1 ATTAAAATAA
16096746 A-TAAAATAA
1 ATTAAAATAA
16096755 ATTAAAATTAAA
1 ATTAAAA-T-AA
16096767 ATTAAAAT
1 ATTAAAAT
16096775 TTTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.35
10 6 0.23
11 2 0.08
12 9 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
ATTAAAATAA
Found at i:16096840 original size:12 final size:12
Alignment explanation
Indices: 16096823--16096848 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16096813 TAGAAATAAT
16096823 AATAACAACAAC
1 AATAACAACAAC
16096835 AATAACAACAAC
1 AATAACAACAAC
16096847 AA
1 AA
16096849 CAATAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.23, G:0.00, T:0.08
Consensus pattern (12 bp):
AATAACAACAAC
Found at i:16096844 original size:15 final size:15
Alignment explanation
Indices: 16096820--16096854 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
16096810 ATTTAGAAAT
*
16096820 AATAATAACAACAAC
1 AATAACAACAACAAC
16096835 AATAACAACAACAAC
1 AATAACAACAACAAC
16096850 AATAA
1 AATAA
16096855 TAATAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.69, C:0.20, G:0.00, T:0.11
Consensus pattern (15 bp):
AATAACAACAACAAC
Found at i:16096881 original size:4 final size:4
Alignment explanation
Indices: 16096872--16096902 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
16096862 GATAACAATA
*
16096872 AAAT AAAT AAGT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
16096903 ACTTAAGGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:16097947 original size:89 final size:86
Alignment explanation
Indices: 16097824--16098058 Score: 249
Period size: 89 Copynumber: 2.7 Consensus size: 86
16097814 AGGCTCAATG
* * * *
16097824 ATAAATGCTCCTCTAAACAGAGGC-AACACAAC-TTTGAAAAATAAAATGCTCCTCTAAACAGAA
1 ATAAA-GCTCATCTAAACAGAGGCTCA-ACGACTTTTGAAAAATAAAATGCTCATCTAAACAGAA
16097887 GCTCAACGACTTTTTGTAAAAAAATAA
64 GCTCAACGAC-TTTTG---AAAAATAA
* * * *
16097914 ATAAAGTTCATCTAAACAGAGGCTCAACGACTTTTGAAAAATAAATAAAAGCTCATATAATCAGA
1 ATAAAGCTCATCTAAACAGAGGCTCAACGACTTTTGAAAAAT--A-AAATGCTCATCTAAACAGA
* *
16097979 GGCTCAATGACTTTTGAAAAATAA
63 AGCTCAACGACTTTTGAAAAATAA
* * * *
16098003 ATAAAGCTCCTCTAAACAGAAGCTCAATGACTTTTGAAAAATAAATTGCTCATCTA
1 ATAAAGCTCATCTAAACAGAGGCTCAACGACTTTTGAAAAATAAAATGCTCATCTA
16098059 CATAGAGGCT
Statistics
Matches: 123, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
86 10 0.08
87 1 0.01
89 66 0.54
90 16 0.13
92 6 0.05
93 24 0.20
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.26
Consensus pattern (86 bp):
ATAAAGCTCATCTAAACAGAGGCTCAACGACTTTTGAAAAATAAAATGCTCATCTAAACAGAAGC
TCAACGACTTTTGAAAAATAA
Found at i:16098028 original size:44 final size:44
Alignment explanation
Indices: 16097856--16098048 Score: 237
Period size: 44 Copynumber: 4.3 Consensus size: 44
16097846 GCAACACAAC
* *
16097856 TTTGAAAAAT-AA-AATGCTCCTCTAAACAGAAGCTCAACGACTT
1 TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCTCAACGAC-T
* *
16097899 TTTGTAAAAAAATAAATAAAGTTCATCTAAACAGAGGCTCAACGACT
1 TTTG---AAAAATAAATAAAGCTCATCTAAACAGAAGCTCAACGACT
* * * *
16097946 TTTGAAAAATAAATAAAAGCTCATATAATCAGAGGCTCAATGACT
1 TTTGAAAAATAAAT-AAAGCTCATCTAAACAGAAGCTCAACGACT
* *
16097991 TTTGAAAAATAAATAAAGCTCCTCTAAACAGAAGCTCAATGACT
1 TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCTCAACGACT
16098035 TTTGAAAAATAAAT
1 TTTGAAAAATAAAT
16098049 TGCTCATCTA
Statistics
Matches: 132, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
43 4 0.03
44 50 0.38
45 40 0.30
46 6 0.05
47 7 0.05
48 25 0.19
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (44 bp):
TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCTCAACGACT
Found at i:16098917 original size:21 final size:23
Alignment explanation
Indices: 16098891--16098938 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
16098881 GAGTCTTCCA
16098891 TTTTCATTTTTTT-TCTTT-TTT
1 TTTTCATTTTTTTATCTTTATTT
*
16098912 TTTTCATTTTTTTATTTTTATTT
1 TTTTCATTTTTTTATCTTTATTT
16098935 TTTT
1 TTTT
16098939 TTCAAGCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.54
22 4 0.17
23 7 0.29
ACGTcount: A:0.08, C:0.06, G:0.00, T:0.85
Consensus pattern (23 bp):
TTTTCATTTTTTTATCTTTATTT
Found at i:16098923 original size:14 final size:13
Alignment explanation
Indices: 16098897--16098940 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
16098887 TCCATTTTCA
*
16098897 TTTTTTTT-CTTT
1 TTTTTTTTATTTT
*
16098909 TTTTTTTCATTTT
1 TTTTTTTTATTTT
16098922 TTTATTTTTATTTT
1 TTT-TTTTTATTTT
16098936 TTTTT
1 TTTTT
16098941 CAAGCATAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 7 0.26
13 8 0.30
14 12 0.44
ACGTcount: A:0.07, C:0.05, G:0.00, T:0.89
Consensus pattern (13 bp):
TTTTTTTTATTTT
Found at i:16100628 original size:58 final size:58
Alignment explanation
Indices: 16100498--16100733 Score: 248
Period size: 58 Copynumber: 4.0 Consensus size: 58
16100488 TGTTTTTGTA
* * * *
16100498 CAAGAAAAATTGATATTTTTAACTTT-TCCCTAAAAATATATATTTTTAAACCTTTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTCTCCC--AAAA-ATAT-TTTTTAAA-ATTTTTATTTT
* *
16100560 TAA-GAGAAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTTAAAAATTTTATTTT
1 CAAGGA-AAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTTAAAATTTTTATTTT
* * *
16100618 CAAGGAAAATTGATACTTTCAACTTTTTTCTAAAAATATTTTTTAAAATCTTTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTTAAAA--TTTTTATTTT
* * *
16100678 CAAGGGAAATTGATACTTTCAAC-TTC-CCCCAAAATA-CTTTTAGAAATTTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTTA-AAATTTTTATTTT
16100734 AGAAATTTTA
Statistics
Matches: 151, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
56 10 0.07
57 5 0.03
58 60 0.40
59 12 0.08
60 35 0.23
61 5 0.03
62 20 0.13
63 4 0.03
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.46
Consensus pattern (58 bp):
CAAGGAAAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTTAAAATTTTTATTTT
Found at i:16100701 original size:60 final size:59
Alignment explanation
Indices: 16100504--16100702 Score: 256
Period size: 58 Copynumber: 3.3 Consensus size: 59
16100494 TGTACAAGAA
* * * * * *
16100504 AAATTGATATTTTTAACTTTTCCCTAAAAATATATATTTTTAAACCTTTTTATTTTTAAGAG
1 AAATTGATACTTTCAACTTTTTCCT-AAAA-ATAT-TTTTTAAAACTTTTTATTTTCAAGGG
* * * *
16100566 AAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTTAAAA-ATTTTATTTTCAAGGA
1 AAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTAAAACTTTTTATTTTCAAGGG
*
16100624 AAATTGATACTTTCAACTTTTTTCTAAAAATATTTTTTAAAATCTTTTTATTTTCAAGGG
1 AAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTAAAA-CTTTTTATTTTCAAGGG
16100684 AAATTGATACTTTCAACTT
1 AAATTGATACTTTCAACTT
16100703 CCCCCAAAAT
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
58 51 0.43
59 8 0.07
60 37 0.31
61 4 0.03
62 20 0.17
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.47
Consensus pattern (59 bp):
AAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTAAAACTTTTTATTTTCAAGGG
Found at i:16100749 original size:15 final size:15
Alignment explanation
Indices: 16100715--16100747 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
16100705 CCCAAAATAC
16100715 TTTTAGAAATTTTTA
1 TTTTAGAAATTTTTA
16100730 TTTTAGAAA-TTTTA
1 TTTTAGAAATTTTTA
16100744 TTTT
1 TTTT
16100748 TAAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (15 bp):
TTTTAGAAATTTTTA
Found at i:16100804 original size:61 final size:61
Alignment explanation
Indices: 16100739--16100854 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
16100729 ATTTTAGAAA
* *
16100739 TTTTATTTT-TAAGAAAAATTGATACTTTTAACTTT-TCTCTAAAAATATATTTTTTTAACCT
1 TTTTATTTTCAAAG-AAAATTGATACTTTCAACTTTCTCTC-AAAAATATATTTTTTTAACCT
* * *
16100800 TTTTATTTTCAAAGGAAATTGGTACTTTCAACTTTCTCTCAAAAATCTATTTTTT
1 TTTTATTTTCAAAGAAAATTGATACTTTCAACTTTCTCTCAAAAATATATTTTTT
16100855 ATTAAAGGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
61 41 0.85
62 7 0.15
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (61 bp):
TTTTATTTTCAAAGAAAATTGATACTTTCAACTTTCTCTCAAAAATATATTTTTTTAACCT
Found at i:16100878 original size:48 final size:46
Alignment explanation
Indices: 16100810--16100901 Score: 123
Period size: 48 Copynumber: 2.0 Consensus size: 46
16100800 TTTTATTTTC
* *
16100810 AAAGGAAATTGGTACTTTCAACTTT-CTCTCAAAAATCTATTTTTTATT
1 AAAGGAAATTGATACATTCAACTTTCCT-TCAAAAA--TATTTTTTATT
*
16100858 AAAGGAAATTGATACATTCAATTTTCCTTCAAAAATATTTTTTA
1 AAAGGAAATTGATACATTCAACTTTCCTTCAAAAATATTTTTTA
16100902 AAAATTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
46 9 0.22
48 29 0.73
49 2 0.05
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (46 bp):
AAAGGAAATTGATACATTCAACTTTCCTTCAAAAATATTTTTTATT
Found at i:16100927 original size:58 final size:59
Alignment explanation
Indices: 16100863--16100974 Score: 174
Period size: 58 Copynumber: 1.9 Consensus size: 59
16100853 TTATTAAAGG
16100863 AAATTGATACATTCAA-TTTTCCTTCAAAAATA-TTTTTTAAAAATTTTATTTTCAAGAA
1 AAATTGATACATTCAACTTTTCC-TCAAAAATATTTTTTTAAAAATTTTATTTTCAAGAA
* *
16100921 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTTATTTT
1 AAATTGATACATTCAACTTTTCCTCAAAAATA-TTTTTTTAAAAATTTTATTTT
16100975 AGGAAAATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
58 24 0.49
59 6 0.12
60 19 0.39
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.48
Consensus pattern (59 bp):
AAATTGATACATTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTATTTTCAAGAA
Found at i:16100965 original size:16 final size:16
Alignment explanation
Indices: 16100947--16100987 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
16100937 CTTTTCCTCA
*
16100947 AAAATATTT-TTTTTG
1 AAAATATTTATTTTAG
16100962 AAAAT-TTTATTTTAGG
1 AAAATATTTATTTTA-G
16100978 AAAATATTTA
1 AAAATATTTA
16100988 AAAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 3 0.14
15 9 0.41
16 6 0.27
17 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (16 bp):
AAAATATTTATTTTAG
Found at i:16101861 original size:17 final size:17
Alignment explanation
Indices: 16101841--16101873 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16101831 TTTCCTAAAT
16101841 TTTTTTAATTTTTTTAC
1 TTTTTTAATTTTTTTAC
*
16101858 TTTTTTTATTTTTTTA
1 TTTTTTAATTTTTTTA
16101874 TTAACAGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTAATTTTTTTAC
Found at i:16101872 original size:8 final size:8
Alignment explanation
Indices: 16101839--16101875 Score: 56
Period size: 9 Copynumber: 4.4 Consensus size: 8
16101829 TTTTTCCTAA
16101839 ATTTTTTT
1 ATTTTTTT
16101847 AATTTTTTT
1 -ATTTTTTT
16101856 ACTTTTTTT
1 A-TTTTTTT
16101865 ATTTTTTT
1 ATTTTTTT
16101873 ATT
1 ATT
16101876 AACAGACGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 11 0.41
9 16 0.59
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (8 bp):
ATTTTTTT
Found at i:16107397 original size:52 final size:51
Alignment explanation
Indices: 16107291--16107397 Score: 119
Period size: 52 Copynumber: 2.1 Consensus size: 51
16107281 TTTTTAATTT
* * *
16107291 TATTAAATTTATATATAATTTATTATTAATATTTTAAATTTTATCAATTTTA
1 TATTAAATTTATATATAATTAATTATTAATATTTTAAA-TTTAACAATTATA
* *
16107343 TATTATATTTATATTTAATTAATGTATT-ATATTTTAAA-TTAACAGAATTATA
1 TATTAAATTTATATATAATTAAT-TATTAATATTTTAAATTTAAC--AATTATA
16107395 TAT
1 TAT
16107398 CAAGTGGCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
50 4 0.09
52 39 0.83
53 4 0.09
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (51 bp):
TATTAAATTTATATATAATTAATTATTAATATTTTAAATTTAACAATTATA
Found at i:16111964 original size:24 final size:24
Alignment explanation
Indices: 16111937--16111982 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
16111927 GCTAGGCTAC
16111937 TTGATTGAATTAAGCTTTTCTTGA
1 TTGATTGAATTAAGCTTTTCTTGA
*
16111961 TTGATTGATTTAAGCTTTTCTT
1 TTGATTGAATTAAGCTTTTCTT
16111983 TTCCTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.22, C:0.09, G:0.15, T:0.54
Consensus pattern (24 bp):
TTGATTGAATTAAGCTTTTCTTGA
Found at i:16114089 original size:3 final size:3
Alignment explanation
Indices: 16114081--16114129 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
16114071 AGATAAACAA
*
16114081 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAAT AA- AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
16114125 AAT AA
1 AAT AA
16114130 AAAAATCTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 4 0.10
3 34 0.83
4 3 0.07
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:16119141 original size:3 final size:3
Alignment explanation
Indices: 16119133--16119157 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
16119123 CTTACATCAT
16119133 GCA GCA GCA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA G
16119158 TCTCCCATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.36, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:16121761 original size:2 final size:2
Alignment explanation
Indices: 16121754--16121779 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16121744 CAGAATTAAA
16121754 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
16121780 GATTAGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:16125165 original size:26 final size:26
Alignment explanation
Indices: 16125129--16125207 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16125119 AAAGATAGAG
16125129 CATGAAGTTAACCTCTTGACTCTACA
1 CATGAAGTTAACCTCTTGACTCTACA
*
16125155 CATGAAGTTAACCTCTTGACTCTACG
1 CATGAAGTTAACCTCTTGACTCTACA
*
16125181 CATTAAGTTAACCTCTTGACTCTACA
1 CATGAAGTTAACCTCTTGACTCTACA
16125207 C
1 C
16125208 CAAGTCATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (26 bp):
CATGAAGTTAACCTCTTGACTCTACA
Found at i:16126899 original size:18 final size:19
Alignment explanation
Indices: 16126876--16126916 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
16126866 AATCAAATTA
*
16126876 TATATATTTTTT-AGTTTT
1 TATATATTTTTTAAATTTT
16126894 TATATATTTTTTAAATTTT
1 TATATATTTTTTAAATTTT
16126913 TATA
1 TATA
16126917 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TATATATTTTTTAAATTTT
Found at i:16126978 original size:33 final size:33
Alignment explanation
Indices: 16126930--16126997 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
16126920 TAAAAATAAT
**
16126930 AATTTCATATCAAAAT-TTATTTAAATATATTAA
1 AATTTCATATCAAAATAAAATTTAAATA-ATTAA
* *
16126963 AATTTTATATTAAAATAAAATTTAAATAATTAA
1 AATTTCATATCAAAATAAAATTTAAATAATTAA
16126996 AA
1 AA
16126998 ATTAAAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 21 0.70
34 9 0.30
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (33 bp):
AATTTCATATCAAAATAAAATTTAAATAATTAA
Found at i:16127223 original size:2 final size:2
Alignment explanation
Indices: 16127216--16127244 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16127206 TTATCCATAC
16127216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16127245 AATGTTATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16127920 original size:32 final size:33
Alignment explanation
Indices: 16127884--16127960 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 33
16127874 TAAATTATTA
* *
16127884 AATTTTATTTTAT-TATTAATTTAAATTCAAAT
1 AATTTTATTTTATCGATTAAATTAAATTCAAAT
* *
16127916 AA-TTTAATTTATCGATTAAATTAAATTTAAAT
1 AATTTTATTTTATCGATTAAATTAAATTCAAAT
*
16127948 ATTTTTATATTTA
1 AATTTTAT-TTTA
16127961 ATTCAAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
31 9 0.25
32 19 0.53
33 4 0.11
34 4 0.11
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.55
Consensus pattern (33 bp):
AATTTTATTTTATCGATTAAATTAAATTCAAAT
Found at i:16127969 original size:22 final size:20
Alignment explanation
Indices: 16127942--16127999 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 20
16127932 TAAATTAAAT
16127942 TTAAATATTTTTATATTTAA
1 TTAAATATTTTTATATTTAA
16127962 TTCAAA-ATTTTTATAAATTTAA
1 TT-AAATATTTTTAT--ATTTAA
16127984 TT--ATATTTTTATATTT
1 TTAAATATTTTTATATTT
16128000 TAATATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 18 0.53
21 3 0.09
22 8 0.24
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TTAAATATTTTTATATTTAA
Found at i:16127973 original size:20 final size:18
Alignment explanation
Indices: 16127948--16128022 Score: 64
Period size: 20 Copynumber: 4.0 Consensus size: 18
16127938 AAATTTAAAT
16127948 ATTTTTATATTTAATTCAAA
1 ATTTTTATATTTAATT--AA
*
16127968 ATTTTTATAAATTTAATTAT
1 ATTTTTAT--ATTTAATTAA
*
16127988 ATTTTTATATTTTAA-TAT
1 ATTTTTATA-TTTAATTAA
*
16128006 TTTTTTAT-TTTAATTAA
1 ATTTTTATATTTAATTAA
16128023 TAAAATATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
16 5 0.10
17 2 0.04
18 11 0.23
19 5 0.10
20 17 0.35
22 8 0.17
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTTATATTTAATTAA
Found at i:16128010 original size:18 final size:20
Alignment explanation
Indices: 16127937--16128013 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 20
16127927 TCGATTAAAT
16127937 TAAATTTAA--ATATTTTTA
1 TAAATTTAATTATATTTTTA
*
16127955 T--ATTTAATTCAAAATTTTTA
1 TAAATTTAATT--ATATTTTTA
16127975 TAAATTTAATTATATTTTTA
1 TAAATTTAATTATATTTTTA
* *
16127995 T-ATTTTAA-TATTTTTTTA
1 TAAATTTAATTATATTTTTA
16128013 T
1 T
16128014 TTTAATTAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
16 6 0.12
18 11 0.22
19 6 0.12
20 18 0.37
22 8 0.16
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (20 bp):
TAAATTTAATTATATTTTTA
Found at i:16128016 original size:16 final size:16
Alignment explanation
Indices: 16127986--16128019 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
16127976 AAATTTAATT
16127986 ATATTTTTATATTTTA
1 ATATTTTTATATTTTA
*
16128002 ATATTTTTTTATTTTA
1 ATATTTTTATATTTTA
16128018 AT
1 AT
16128020 TAATAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATATTTTTATATTTTA
Found at i:16128162 original size:11 final size:11
Alignment explanation
Indices: 16128148--16128223 Score: 62
Period size: 11 Copynumber: 6.5 Consensus size: 11
16128138 TAATTTTTAT
16128148 TTTAAATTAAA
1 TTTAAATTAAA
16128159 TTTAAATTAAAAAA
1 TTTAAATT---AAA
* **
16128173 TTTTAATCGAA
1 TTTAAATTAAA
*
16128184 TTCAAATTAAA
1 TTTAAATTAAA
*
16128195 TTTTAAATAAAA
1 -TTTAAATTAAA
16128207 TTTAAAATTAAA
1 TTT-AAATTAAA
16128219 TTTAA
1 TTTAA
16128224 TAATATATCA
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
11 22 0.44
12 19 0.38
14 9 0.18
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (11 bp):
TTTAAATTAAA
Found at i:16128163 original size:23 final size:23
Alignment explanation
Indices: 16128082--16128163 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 23
16128072 TCAAATATAA
16128082 AAATTAAATTT-ATTTTTATTTAT
1 AAATTAAATTTAATTTTTATTT-T
* * * * *
16128105 TAATTAAATTGAATCTAATAAATTT
1 AAATTAAATTTAAT-T-TTTATTTT
16128130 AAA-T-AATTTAATTTTTATTTT
1 AAATTAAATTTAATTTTTATTTT
16128151 AAATTAAATTTAA
1 AAATTAAATTTAA
16128164 ATTAAAAAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 10
0.69 0.16 0.16
Matches are distributed among these distances:
21 8 0.18
22 2 0.05
23 23 0.52
24 3 0.07
25 4 0.09
26 4 0.09
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (23 bp):
AAATTAAATTTAATTTTTATTTT
Found at i:16128174 original size:46 final size:47
Alignment explanation
Indices: 16128088--16128218 Score: 124
Period size: 46 Copynumber: 2.8 Consensus size: 47
16128078 ATAAAAATTA
* * *
16128088 AATTT-ATTTTTATTTATTAATTAAA-TTGAATCTAATAAATTTAAAT-
1 AATTTAATTTTTATTT-TAAATTAAATTTAAAT-TAAAAAATTTAAATC
*
16128134 AATTTAATTTTTATTTTAAATTAAATTTAAATTAAAAAATTTTAATC
1 AATTTAATTTTTATTTTAAATTAAATTTAAATTAAAAAATTTAAATC
* * ** *
16128181 GAATTCAAATTAAATTTTAAATAAAATTTAAAATTAAA
1 -AATTTAATTTTTATTTTAAATTAAATTT-AAATTAAA
16128219 TTTAATAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 25 0.35
47 15 0.21
48 23 0.32
49 8 0.11
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (47 bp):
AATTTAATTTTTATTTTAAATTAAATTTAAATTAAAAAATTTAAATC
Found at i:16128222 original size:12 final size:12
Alignment explanation
Indices: 16128187--16128223 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
16128177 AATCGAATTC
*
16128187 AAATTAAATTTT
1 AAATTAAATTTA
*
16128199 AAATAAAATTTA
1 AAATTAAATTTA
16128211 AAATTAAATTTA
1 AAATTAAATTTA
16128223 A
1 A
16128224 TAATATATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAATTAAATTTA
Found at i:16128300 original size:36 final size:36
Alignment explanation
Indices: 16128255--16128326 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
16128245 ATTGATTACA
* *
16128255 CCTTTAATAATACTCTAGTCGCTCCTCCAACCGTCT
1 CCTTTAATAATACCCTACTCGCTCCTCCAACCGTCT
16128291 CCTTTAATAATACCCTACTCGCTCCTCCAACCGTCT
1 CCTTTAATAATACCCTACTCGCTCCTCCAACCGTCT
16128327 TTCACGGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.22, C:0.39, G:0.07, T:0.32
Consensus pattern (36 bp):
CCTTTAATAATACCCTACTCGCTCCTCCAACCGTCT
Found at i:16135574 original size:7 final size:7
Alignment explanation
Indices: 16135562--16135588 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
16135552 TGACCTTGTA
16135562 ACATTTG
1 ACATTTG
16135569 ACATTTG
1 ACATTTG
16135576 ACATTTG
1 ACATTTG
16135583 ACATTT
1 ACATTT
16135589 CAATTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (7 bp):
ACATTTG
Found at i:16135596 original size:13 final size:14
Alignment explanation
Indices: 16135562--16135596 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
16135552 TGACCTTGTA
*
16135562 ACATTTGACATTTG
1 ACATTTGACATTTC
16135576 ACATTTGACATTTC
1 ACATTTGACATTTC
16135590 A-ATTTGA
1 ACATTTGA
16135597 AAATAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (14 bp):
ACATTTGACATTTC
Found at i:16136902 original size:29 final size:30
Alignment explanation
Indices: 16136869--16136969 Score: 120
Period size: 30 Copynumber: 3.4 Consensus size: 30
16136859 TAGTGATTAC
16136869 TTAAATTTTTAATATTTTA-TTACAATCAA
1 TTAAATTTTTAATATTTTATTTACAATCAA
* *
16136898 TTAAA-TTCTAATTTTTTACTTTA-AATCAA
1 TTAAATTTTTAATATTTTA-TTTACAATCAA
* *
16136927 TTAAATTTTTAA-ATTTTTATTTTCATTCAA
1 TTAAATTTTTAATA-TTTTATTTACAATCAA
16136957 TTAAATTTTTAAT
1 TTAAATTTTTAAT
16136970 TGAAAGAAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
28 11 0.18
29 19 0.32
30 30 0.50
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (30 bp):
TTAAATTTTTAATATTTTATTTACAATCAA
Found at i:16141812 original size:19 final size:19
Alignment explanation
Indices: 16141788--16141830 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
16141778 GTTTTTATTT
* * *
16141788 TATAAAAATTTAACAAATA
1 TATAAAAACTAAAAAAATA
16141807 TATAAAAACTAAAAAAATA
1 TATAAAAACTAAAAAAATA
16141826 TATAA
1 TATAA
16141831 TTCGGTTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (19 bp):
TATAAAAACTAAAAAAATA
Found at i:16141900 original size:2 final size:2
Alignment explanation
Indices: 16141893--16141918 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16141883 TTCGAACTTA
16141893 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
16141919 TTAATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16146747 original size:97 final size:96
Alignment explanation
Indices: 16146639--16146832 Score: 282
Period size: 97 Copynumber: 2.0 Consensus size: 96
16146629 ATCTCATATT
* *
16146639 AAAAAAATCATATTCTTAAAAATGTTTATAAA-AACGAACTCAATTAATTCATAAGTTTCAAATC
1 AAAAAAATCATATCCTTAAAAATATTTA-AAAGAACGAACTCAATTAATTCATAAGTTTCAAATC
* *
16146703 ACTATTGTTTTAATAATTTGGTCAGCCTACAA
65 AATATTGTTTTAACAATTTGGTCAGCCTACAA
* * * *
16146735 AAAAAGAATCATATCCTTAAAAGTATTTAAAAGAATGAACTCGATTAATTCATGAGTTTCAAATC
1 AAAAA-AATCATATCCTTAAAAATATTTAAAAGAACGAACTCAATTAATTCATAAGTTTCAAATC
*
16146800 AATATTGTTTTAACAATTTGGTCAGCGTACAA
65 AATATTGTTTTAACAATTTGGTCAGCCTACAA
16146832 A
1 A
16146833 GTAAAAAAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
96 8 0.09
97 79 0.91
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (96 bp):
AAAAAAATCATATCCTTAAAAATATTTAAAAGAACGAACTCAATTAATTCATAAGTTTCAAATCA
ATATTGTTTTAACAATTTGGTCAGCCTACAA
Found at i:16147624 original size:13 final size:14
Alignment explanation
Indices: 16147606--16147634 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16147596 TCAACTCAAA
16147606 TAAAATA-TATAAT
1 TAAAATATTATAAT
16147619 TAAAATATTATAAT
1 TAAAATATTATAAT
16147633 TA
1 TA
16147635 TATGAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAAATATTATAAT
Found at i:16149624 original size:52 final size:51
Alignment explanation
Indices: 16149546--16149648 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 51
16149536 TCAGCCCCTT
* *
16149546 ATTTGAATTGAAAATTTATTAAATATTAAATTTTAAAAGTGATTACGTGAGA
1 ATTTGAATTCAAAACTTATTAAATATTAAATTTT-AAAGTGATTACGTGAGA
16149598 ATTTGAATTCAAAACTTATTAAATATTAAATTTTAAAGTGATTACGTGAGA
1 ATTTGAATTCAAAACTTATTAAATATTAAATTTTAAAGTGATTACGTGAGA
16149649 TTCGATTGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 17 0.35
52 32 0.65
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.40
Consensus pattern (51 bp):
ATTTGAATTCAAAACTTATTAAATATTAAATTTTAAAGTGATTACGTGAGA
Found at i:16149743 original size:242 final size:243
Alignment explanation
Indices: 16149448--16149932 Score: 936
Period size: 242 Copynumber: 2.0 Consensus size: 243
16149438 AACCAATGTT
*
16149448 CGTGTGCTCATCTCAAGCCTAGCAGTATGCATCGTTATCTAGCATATACAATCGACTTCGACGGA
1 CGTGTACTCATCTCAAGCCTAGCAGTATGCATCGTTATCTAGCATATACAATCGACTTCGACGGA
*
16149513 CTTCCACCATGATGGCCCCTTTTTCAGCCCCTTATTTGAATTGAAAATTTATTAAATATTAAATT
66 CTTCCACCATGATGGCCCCTTTTCCAGCCCCTTATTTGAATTGAAAATTTATTAAATATTAAATT
16149578 TTAAAAGTGATTACGTGAGAATTTGAATTCAAAACTTATTAAATATTAAATTTT-AAAGTGATTA
131 TTAAAAGTGATTACGTGAGAATTTGAATTCAAAACTTATTAAATATTAAATTTTAAAAGTGATTA
16149642 CGTGAGATTCGATTGATCTAAATTTTGAGTTCAAAAACAAAAACAGAC
196 CGTGAGATTCGATTGATCTAAATTTTGAGTTCAAAAACAAAAACAGAC
16149690 CGTGTACTCATCTCAAGCCTAGCAGTATGCATCGTTATCTAGCATATACAATCGACTTCGACGGA
1 CGTGTACTCATCTCAAGCCTAGCAGTATGCATCGTTATCTAGCATATACAATCGACTTCGACGGA
16149755 CTTCCACCATGATGGCCCCTTTTCCAGCCCCTTATTTGAATTGAAAATTTATTAAATATTAAATT
66 CTTCCACCATGATGGCCCCTTTTCCAGCCCCTTATTTGAATTGAAAATTTATTAAATATTAAATT
*
16149820 TTAAAAGTGATTACGTGAGAATTTGAATTGAAAACTTATTAAATATTAAATTTTAAAAGTGATTA
131 TTAAAAGTGATTACGTGAGAATTTGAATTCAAAACTTATTAAATATTAAATTTTAAAAGTGATTA
16149885 CGTGAGATTCGATTGATCTAAATTTTGAGTTCAAAAACAAAAACAGAC
196 CGTGAGATTCGATTGATCTAAATTTTGAGTTCAAAAACAAAAACAGAC
16149933 TTATTTTACC
Statistics
Matches: 239, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
242 181 0.76
243 58 0.24
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (243 bp):
CGTGTACTCATCTCAAGCCTAGCAGTATGCATCGTTATCTAGCATATACAATCGACTTCGACGGA
CTTCCACCATGATGGCCCCTTTTCCAGCCCCTTATTTGAATTGAAAATTTATTAAATATTAAATT
TTAAAAGTGATTACGTGAGAATTTGAATTCAAAACTTATTAAATATTAAATTTTAAAAGTGATTA
CGTGAGATTCGATTGATCTAAATTTTGAGTTCAAAAACAAAAACAGAC
Found at i:16149866 original size:52 final size:52
Alignment explanation
Indices: 16149788--16149891 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
16149778 CCAGCCCCTT
*
16149788 ATTTGAATTGAAAATTTATTAAATATTAAATTTTAAAAGTGATTACGTGAGA
1 ATTTGAATTGAAAACTTATTAAATATTAAATTTTAAAAGTGATTACGTGAGA
16149840 ATTTGAATTGAAAACTTATTAAATATTAAATTTTAAAAGTGATTACGTGAGA
1 ATTTGAATTGAAAACTTATTAAATATTAAATTTTAAAAGTGATTACGTGAGA
16149892 TTCGATTGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.39
Consensus pattern (52 bp):
ATTTGAATTGAAAACTTATTAAATATTAAATTTTAAAAGTGATTACGTGAGA
Found at i:16160909 original size:26 final size:27
Alignment explanation
Indices: 16160880--16160945 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
16160870 TTTTTCATTC
16160880 AAATAAAAATTTAATTAAATATA-AAT
1 AAATAAAAATTTAATTAAATATAGAAT
*
16160906 AAATATTAAAATATTAATTAATTATAGAAT
1 AAATA--AAAAT-TTAATTAAATATAGAAT
*
16160936 -ATTAAAAATT
1 AAATAAAAATT
16160946 AAATAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
26 6 0.18
27 5 0.15
28 5 0.15
29 15 0.44
30 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (27 bp):
AAATAAAAATTTAATTAAATATAGAAT
Found at i:16164793 original size:38 final size:38
Alignment explanation
Indices: 16164749--16164821 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
16164739 TCTGTTGTGA
**
16164749 TATTCATCCTATGATTGGACTT-GACTTGACGAAGAGAT
1 TATTCATCCTATGATTAAACTTGGA-TTGACGAAGAGAT
* *
16164787 TATTCATCTTATGGTTAAACTTGGATTGACGAAGA
1 TATTCATCCTATGATTAAACTTGGATTGACGAAGA
16164822 CATCAAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
38 28 0.93
39 2 0.07
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (38 bp):
TATTCATCCTATGATTAAACTTGGATTGACGAAGAGAT
Done.