Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22478863
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 61000 characters in sequence are not A, C, G, or T
File 98 of 106
Found at i:20819408 original size:52 final size:52
Alignment explanation
Indices: 20819264--20819409 Score: 179
Period size: 52 Copynumber: 2.8 Consensus size: 52
20819254 GACTTGTAAA
* * *
20819264 AGAAGAATT-TCAAGA-GAAAGAGGATTCTTAATAAGTAAATTTGACTTGCAAG
1 AGAAGAATTCT-AAGAGGAAAG-GGATTCTTAATAGGTAAGTTTGACTTACAAG
* * *
20819316 AGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGTAAGTTTGACTTACATG
1 AGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTTGACTTACAAG
* * *
20819368 AGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 AGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTT
20819410 ATATGGTTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
52 76 0.94
53 5 0.06
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (52 bp):
AGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGTAAGTTTGACTTACAAG
Found at i:20820203 original size:11 final size:11
Alignment explanation
Indices: 20820187--20820217 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
20820177 AATCCCATAA
20820187 GAGATTTGTTT
1 GAGATTTGTTT
20820198 GAGATTTGTTT
1 GAGATTTGTTT
20820209 GAGATTTGT
1 GAGATTTGT
20820218 CAGATATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:20820328 original size:52 final size:52
Alignment explanation
Indices: 20820242--20820398 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
20820232 TGGACAAGAA
* * *
20820242 GACTTGTAAAAGAAGAATTCCAAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAA-AGGATTCTTAATAGGTAAGTTT
*
20820294 GACTTGCAAGAGAAGAATTCTAAAAGGAAAAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGTAAGTTT
* * * * * *
20820346 GACTTACATGAAAAGAATTCTAAGAGG-AGAGAGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAAG-GATTCTTAATAGGTAAGTTT
20820398 G
1 G
20820399 TATGGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 3 0.03
52 85 0.92
53 4 0.04
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAAGGATTCTTAATAGGTAAGTTT
Found at i:20827988 original size:180 final size:179
Alignment explanation
Indices: 20827686--20828047 Score: 645
Period size: 180 Copynumber: 2.0 Consensus size: 179
20827676 ATGACAAATT
20827686 TCTAAAAAAAATTTCATCACCAATCGAGCTTTATACCTCACTAGTTTATCACTATCCTTTTATTA
1 TCTAAAAAAAATTTCATCACCAATCGAGCTTTATACCTCACTAGTTTATCACTATCCTTTTATTA
20827751 GCTTGAATACACATTTATTCTTCAACAATCTTCTCATTTTCAAAAGATTAATAAGATCATATGTG
66 GCTTGAATACACATTTATTCTTCAACAATCTTCTCATTTTCAAAAGATTAATAAGATCATATGTG
*
20827816 -TCATTTTTTGCAATGACTCCTTTTTTTCTTTCACTATTTTTAACTAATGC
131 CT-ATTTTTTACAATGACT-CTTTTTTTCTTTCACTATTTTTAACTAATGC
* *
20827866 TCTAAAAAAAATTTCATCACCAATCGAGCTTTGTACCTCACTAGTTTATCACTTTCCTTTTATTA
1 TCTAAAAAAAATTTCATCACCAATCGAGCTTTATACCTCACTAGTTTATCACTATCCTTTTATTA
*
20827931 GCTTGAATACACATTTATTCTTCAACAATCTTCTTATTTTCAAAAGATTAATAAGATCATATGTG
66 GCTTGAATACACATTTATTCTTCAACAATCTTCTCATTTTCAAAAGATTAATAAGATCATATGTG
* *
20827996 CTATTTTTTATAATGACTTTTTTTTTCTTTCACTATTTTTAACTAATGC
131 CTATTTTTTACAATGACTCTTTTTTTCTTTCACTATTTTTAACTAATGC
20828045 TCT
1 TCT
20828048 TTATTTGAAG
Statistics
Matches: 175, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
179 33 0.19
180 141 0.81
181 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (179 bp):
TCTAAAAAAAATTTCATCACCAATCGAGCTTTATACCTCACTAGTTTATCACTATCCTTTTATTA
GCTTGAATACACATTTATTCTTCAACAATCTTCTCATTTTCAAAAGATTAATAAGATCATATGTG
CTATTTTTTACAATGACTCTTTTTTTCTTTCACTATTTTTAACTAATGC
Found at i:20828673 original size:52 final size:52
Alignment explanation
Indices: 20828587--20828731 Score: 179
Period size: 52 Copynumber: 2.8 Consensus size: 52
20828577 TATAACCATA
* * * * *
20828587 CAAACTTGCCCATTAAGAATCTCTCTCCTCTTAGAATTCTTCT-TCTGTAAAT
1 CAAACTTACCTATTAAGAATCTCTTTCTTCTTAGAATTCTTCTCT-TGCAAAT
* *
20828639 CAAACTTACCTATTAAGAATCTCTTTCTTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCTTCTTAGAATTCTTCTCTTGCAAAT
20828691 CAAACTTACCTATTAAGAATCTTCTTTC-TCTT-GAAATTCTT
1 CAAACTTACCTATTAAGAATC-TCTTTCTTCTTAG-AATTCTT
20828732 TTTTACAAGT
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
51 1 0.01
52 74 0.90
53 7 0.09
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCTCTTTCTTCTTAGAATTCTTCTCTTGCAAAT
Found at i:20828785 original size:11 final size:11
Alignment explanation
Indices: 20828769--20828808 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
20828759 AATATCTGAT
20828769 AAATCTCAAAC
1 AAATCTCAAAC
*
20828780 AAATCTCTAAC
1 AAATCTCAAAC
20828791 AAATCTCAAAC
1 AAATCTCAAAC
20828802 AAATCTC
1 AAATCTC
20828809 TTATGGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:20829744 original size:52 final size:52
Alignment explanation
Indices: 20829659--20829782 Score: 185
Period size: 52 Copynumber: 2.4 Consensus size: 52
20829649 ATAACCATAT
* * * *
20829659 AAACTTTCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTGTAAGTC
1 AAACTTACCTATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGCAAGTC
* * *
20829711 AAACTTACCTATTAAGAATCCATTTCCTTTTAGAATTCTTCTCTTGCAAGTC
1 AAACTTACCTATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGCAAGTC
20829763 AAACTTACCTATTAAGAATC
1 AAACTTACCTATTAAGAATC
20829783 TTCTTTCTCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (52 bp):
AAACTTACCTATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGCAAGTC
Found at i:20829855 original size:11 final size:11
Alignment explanation
Indices: 20829839--20829880 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
20829829 GCAATATCTG
20829839 ACAAATCTCAA
1 ACAAATCTCAA
*
20829850 ACAAATCTCTA
1 ACAAATCTCAA
*
20829861 ATAAATCTCAA
1 ACAAATCTCAA
20829872 ACAAATCTC
1 ACAAATCTC
20829881 TTATGAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:20832906 original size:20 final size:20
Alignment explanation
Indices: 20832869--20832910 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
20832859 TTTTTCACTA
* *
20832869 TTATTTAAAGCAATCCTCAT
1 TTATTTAAAACAACCCTCAT
*
20832889 TTATTTAAAACAGCCCTCAT
1 TTATTTAAAACAACCCTCAT
20832909 TT
1 TT
20832911 CTTTTGTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (20 bp):
TTATTTAAAACAACCCTCAT
Found at i:20833386 original size:18 final size:18
Alignment explanation
Indices: 20833332--20833397 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
20833322 ATAGGCAACC
*
20833332 TATTTTT-TATTTTAATA
1 TATTTTTATTTTTTAATA
** *
20833349 TATTTTTATTAAAATAAATA
1 TATTTTTATT--TTTTAATA
20833369 TATTTTTATTTTTTAATA
1 TATTTTTATTTTTTAATA
* *
20833387 TCTATTTATTT
1 TATTTTTATTT
20833398 AAGTCATTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
17 7 0.19
18 15 0.41
20 15 0.41
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTTTTATTTTTTAATA
Found at i:20834271 original size:2 final size:2
Alignment explanation
Indices: 20834266--20834293 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20834256 TGAGAGTTTG
20834266 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20834294 AAGTCGAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20835353 original size:2 final size:2
Alignment explanation
Indices: 20835342--20835373 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
20835332 TTTAAATGGT
20835342 TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
20835374 TCATTTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:20836868 original size:15 final size:16
Alignment explanation
Indices: 20836830--20836860 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
20836820 AATAAGACAT
20836830 CTATGTTTTTATGTTA
1 CTATGTTTTTATGTTA
20836846 CTATGTTTTTATGTT
1 CTATGTTTTTATGTT
20836861 TCTTGTTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.13, T:0.65
Consensus pattern (16 bp):
CTATGTTTTTATGTTA
Found at i:20849208 original size:27 final size:27
Alignment explanation
Indices: 20849172--20849223 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
20849162 TATAAGTAAG
* *
20849172 TTTTGATAATTTTTTATAAAATTTTAA
1 TTTTGATAATATTTGATAAAATTTTAA
*
20849199 TTTTGGTAATATTTGATAAAATTTT
1 TTTTGATAATATTTGATAAAATTTT
20849224 GGTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (27 bp):
TTTTGATAATATTTGATAAAATTTTAA
Found at i:20849257 original size:41 final size:42
Alignment explanation
Indices: 20849212--20849306 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
20849202 TGGTAATATT
* * * *
20849212 TGATAAAATTTTGGTAATTTTTTATA-TATTTTAGTAACTTA
1 TGATAAAATTTTGATAACTATTTATACAATTTTAGTAACTTA
* * *
20849253 TGATATAATTTTGATAACTATTTATACAATTTTAGTAATTTT
1 TGATAAAATTTTGATAACTATTTATACAATTTTAGTAACTTA
20849295 TGATAAAATTTT
1 TGATAAAATTTT
20849307 AACAATCTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 22 0.49
42 23 0.51
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (42 bp):
TGATAAAATTTTGATAACTATTTATACAATTTTAGTAACTTA
Found at i:20849307 original size:21 final size:21
Alignment explanation
Indices: 20849197--20849307 Score: 93
Period size: 21 Copynumber: 5.3 Consensus size: 21
20849187 ATAAAATTTT
* *
20849197 AATTTTGGTAATATTTGATAA
1 AATTTTAGTAATTTTTGATAA
* *
20849218 AATTTTGGTAATTTTTTAT-A
1 AATTTTAGTAATTTTTGATAA
* * * *
20849238 TATTTTAGTAACTTATGATAT
1 AATTTTAGTAATTTTTGATAA
* *
20849259 AATTTT-GATAACTATTT-ATAC
1 AATTTTAG-TAA-TTTTTGATAA
20849280 AATTTTAGTAATTTTTGATAA
1 AATTTTAGTAATTTTTGATAA
20849301 AATTTTA
1 AATTTTA
20849308 ACAATCTTTT
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
20 20 0.29
21 47 0.67
22 3 0.04
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (21 bp):
AATTTTAGTAATTTTTGATAA
Found at i:20850639 original size:19 final size:20
Alignment explanation
Indices: 20850595--20850639 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
20850585 GGATTTTTTT
20850595 ATATATTTATATAAACAATA
1 ATATATTTATATAAACAATA
* *
20850615 AT-TATTTATGT-TACAATA
1 ATATATTTATATAAACAATA
20850633 ATATATT
1 ATATATT
20850640 CTTACAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 8 0.36
19 12 0.55
20 2 0.09
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (20 bp):
ATATATTTATATAAACAATA
Found at i:20851152 original size:230 final size:228
Alignment explanation
Indices: 20850911--20851574 Score: 632
Period size: 234 Copynumber: 2.9 Consensus size: 228
20850901 TTACATCAGG
* * * *
20850911 TTTAGAATTATCGTAACTCTTTCTTAATGTTTTACAACACTTCGTACTCATTTTATACTAAATGA
1 TTTAAAATTATCATAACTCTTTCTTAATGTATTACAACACTTCATACTCATTTTAT-CTAAATGA
* *
20850976 TATTAATTTTAC-GTTTCTCACTTGTTTACATTATCAATTTATTTTTTAATTTTTAGTTATTTTT
65 TACTAATTTTACTGTTT-TCACTTGTTTACATTATTAATTTATTTTTTAATTTTTAGTTA-TTTT
* *
20851040 CTTATATATTTATAGGAATAATAATTAATTAAAATTTTGCATTATCAACATAATTATTTACTTTA
128 CTTATATATTTATA--AATAATAATTAATTAAAATTTTACATTA-CAACATAATTATTTACATTA
* * *
20851105 CAATAATTTTTATGGT-T-A-T-TTTTATTTTTCATTACA
190 CAATAATTTAT-TGGTATAACTATTTTACTTTTCAATACA
* * * * * * * *
20851141 TTTATAATTATCATAACTCTTTCTTAATATGTTACGACACTTCTTACTTATTTTGCTTTAAATGA
1 TTTAAAATTATCATAACTCTTTCTTAATGTATTACAACACTTCATACTCATTTT-ATCTAAATGA
* * *
20851206 TACTAATTTTACATTTGTTTTAACTTGTTTACTTTATTAATTTATTTTTTAATTTCTA-TCTATT
65 TACTAATTTTAC---TGTTTTCACTTGTTTACATTATTAATTTATTTTTTAATTTTTAGT-TATT
* * * *
20851270 TTCTTTAAATATTTACAAATTAATAATTAATTAAAATTTTACATTACTAATATAATTATTTACGT
126 TTC-TTATATATTTATAAA-TAATAATTAATTAAAATTTTACATTAC-AACATAATTATTTACAT
* * **
20851335 TACAATAATATATTGTTATAACTATTTTACTTTTCAATATG
188 TACAATAATTTATTGGTATAACTATTTTACTTTTCAATACA
* * * * * * * * *
20851376 TTTAAAATTGTTATAACACTTT-TTAGTGTATTAAAACAATTCATACCCATTTTATGGTAAATAA
1 TTTAAAATTATCATAACTCTTTCTTAATGTATTACAACACTTCATACTCATTTTAT-CTAAATGA
* * *
20851440 TACTAATTTTACATTTATTTTCACTTGTTTACGTTATTAATATGT-TTTTTTAATTTTTAGCTAT
65 TACTAATTTTAC---TGTTTTCACTTGTTTACATTATTAAT-T-TATTTTTTAATTTTTAGTTAT
* * * *
20851504 TTT-TT-TATGTTT-TAAA-AATAATTAATTAAAATTTTACATTGGCAACTTAATTATTTTCATT
125 TTTCTTATATATTTATAAATAATAATTAATTAAAATTTTACATT-ACAACATAATTATTTACATT
20851565 ACAATAATTT
189 ACAATAATTT
20851575 GTTTTTATGA
Statistics
Matches: 360, Mismatches: 56, Indels: 37
0.79 0.12 0.08
Matches are distributed among these distances:
229 47 0.13
230 66 0.18
231 10 0.03
232 63 0.17
233 51 0.14
234 71 0.20
235 51 0.14
236 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (228 bp):
TTTAAAATTATCATAACTCTTTCTTAATGTATTACAACACTTCATACTCATTTTATCTAAATGAT
ACTAATTTTACTGTTTTCACTTGTTTACATTATTAATTTATTTTTTAATTTTTAGTTATTTTCTT
ATATATTTATAAATAATAATTAATTAAAATTTTACATTACAACATAATTATTTACATTACAATAA
TTTATTGGTATAACTATTTTACTTTTCAATACA
Found at i:20855604 original size:86 final size:87
Alignment explanation
Indices: 20855513--20855675 Score: 265
Period size: 86 Copynumber: 1.9 Consensus size: 87
20855503 TTTTTTGTTT
* * *
20855513 TTTTGGCTTATTTTTTTATTATATTTGAGTTTGATATATGTTTTTTATTTTGGGTTAATTGATGT
1 TTTTGGCTTATTTTTCTATTATATTTAAGTTTGATATATGTTTTTTATTTTGGGTTAATTGATAT
20855578 TGAGTTT-CAAAATTTTTAAAA
66 TGAGTTTGCAAAATTTTTAAAA
* * *
20855599 TTTTGGTTTATTTTTCTATTATATTTAAGTTTGATTTATGTTTTTTATTTTGGGTTATTTGATAT
1 TTTTGGCTTATTTTTCTATTATATTTAAGTTTGATATATGTTTTTTATTTTGGGTTAATTGATAT
20855664 TGAGTTTGCAAA
66 TGAGTTTGCAAA
20855676 TGTTAGAGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 66 0.94
87 4 0.06
ACGTcount: A:0.23, C:0.02, G:0.15, T:0.60
Consensus pattern (87 bp):
TTTTGGCTTATTTTTCTATTATATTTAAGTTTGATATATGTTTTTTATTTTGGGTTAATTGATAT
TGAGTTTGCAAAATTTTTAAAA
Found at i:20858814 original size:214 final size:213
Alignment explanation
Indices: 20858407--20858816 Score: 470
Period size: 214 Copynumber: 1.9 Consensus size: 213
20858397 ATATTGTAAC
* * * *
20858407 ATACTAAAAAAGAGTTATTACAATTCTAAACATAATAAAAAAAAGAAAAACCATAAAAAGATATT
1 ATACTAAAAAAGAGCTATTACAATTCTAAACATAATAAAAAAAAGAAAAACCATAAAAACAAAAT
* *
20858472 ATTATAACATAAATAATTATGTTGGCAACATAAAATTTGAATTAATTATTATTTTTAAATACATA
66 ATTATAACATAAATAATTAAGTTGACAACATAAAATTTGAATTAATTATTATTTTTAAATA-ATA
* * ** *** *** *
20858537 AAGAAAATAGATAAAAATTAAAAAATAAATAGATAATGTGAAATGAGTTTCATTTAGTGTAAAAT
130 AAGAAAATAGATAAAAAGTAAAAAATAAATAGATAACGTGAAACAAGTAGAAAAAAATGTAAAAT
20858602 TGAAAAAAAGTGTCATAAT
195 TGAAAAAAAGTGTCATAAT
* * * * * * *
20858621 ATACTAAAAAAGAGCTATTATAATTTTAAACGTAATTAAAGATAAGAACAATCATAAAAACAAAA
1 ATACTAAAAAAGAGCTATTACAATTCTAAACATAA-TAAAAAAAAGAAAAACCATAAAAACAAAA
* *
20858686 TATTGTAACATAAATAATTAAGTT-ACAACATAAAATTTTAATTAATTATT-TTTTTAAAT-ATA
65 TATTATAACATAAATAATTAAGTTGACAACATAAAATTTGAATTAATTATTATTTTTAAATAATA
* *
20858748 CAAGAAAATTAGCA-AAAAAGTAAAAATATATATTGATAACGT-AAACAAGTGAGAAAAAAATGT
130 -AAGAAAA-TAG-ATAAAAAGTAAAAA-ATAAATAGATAACGTGAAACAAGT-AGAAAAAAATGT
20858811 AAAATT
190 AAAATT
20858817 AGTATCATTT
Statistics
Matches: 162, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
211 3 0.02
212 7 0.04
213 29 0.18
214 79 0.49
215 44 0.27
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (213 bp):
ATACTAAAAAAGAGCTATTACAATTCTAAACATAATAAAAAAAAGAAAAACCATAAAAACAAAAT
ATTATAACATAAATAATTAAGTTGACAACATAAAATTTGAATTAATTATTATTTTTAAATAATAA
AGAAAATAGATAAAAAGTAAAAAATAAATAGATAACGTGAAACAAGTAGAAAAAAATGTAAAATT
GAAAAAAAGTGTCATAAT
Found at i:20858835 original size:449 final size:451
Alignment explanation
Indices: 20858147--20859024 Score: 1091
Period size: 449 Copynumber: 2.0 Consensus size: 451
20858137 ATCATTTGAC
* *
20858147 GTAAAATGGATAAAAAATGTCATAATATACTAAGAAAGAACTATGACAATTTTAAATATATTGGA
1 GTAAAATGGATAAAAAATGTCATAATATACTAAAAAAGAACTATGACAATTTTAAATATATTGAA
* * * * * * *
20858212 AGTAAGAACAAACATAAAATATATTATTGTAACGTAAATAATTATGCTAACAATATAAATTTTTA
66 AGTAAGAACAAACATAAAACAAAATATTGTAACATAAATAATTAAGCTAACAACATAAAATTTTA
* * * * * *
20858277 ATTGATTACTGTTTTTGTATATATATAAATAAAATAGCTATAAATTAAAAATAAATTGATAATGT
131 ATTAATTACTGTTTTTGTATATATATAAAGAAAATAGCAAAAAAGTAAAAATAAATTGATAACGT
* * * * * ** *
20858342 AAATAAGTGTAAAAAAATATAGAATTAGTGTCATTTACTGTAAAATGGGTAAAAAATATTGTAAC
196 AAACAAGTGGAAAAAAATATAAAATTAGTATCATTTAATGTAAAATAAGTAAAAAATATCGTAAC
* * *
20858407 ATACTAAAAAAGAGTTATTACAATTCTAAACATAAT-AAAAA-AAAGAAAAACCATAAAAAGATA
261 ATACTAAAAAA-AGTCATGACAATTCTAAACATAATGAAAAATAAA-AAAAACAATAAAAAGATA
* *
20858470 TTATTATAACATAAATAATTATGTTGGCAACATAAAATTTGAATTAATTATTA-TTTTT-AAATA
324 TTATTATAACATAAATAATTATATTGACAACATAAAATTTGAATTAATTATTATTTTTTAAAATA
20858533 CATAAAGAAAATAGATAAAAATT-AAAAAATAAATAGATAATGTGAAATGAGTTTCATTTAGT
389 CATAAAGAAAATAGATAAAAATTAAAAAAATAAATAGATAATGTGAAATGAGTTTCATTTAGT
* * * *
20858595 GTAAAATTGA-AAAAAAGTGTCATAATATACTAAAAAAGAGCTATTATAATTTTAAACGTA-ATT
1 GTAAAATGGATAAAAAA-TGTCATAATATACTAAAAAAGAACTATGACAATTTTAAA--TATATT
* *
20858658 -AAAGATAAGAACAATCATAAAAACAAAATATTGTAACATAAATAATTAAG-TTACAACATAAAA
63 GAAAG-TAAGAACAAACAT-AAAACAAAATATTGTAACATAAATAATTAAGCTAACAACATAAAA
20858721 TTTTAATTAATTA-T-TTTTT-TA-A-ATATACAAGAAAATTAGCAAAAAAGTAAAAATATATAT
126 TTTTAATTAATTACTGTTTTTGTATATATATA-AAGAAAA-TAGCAAAAAAGTAAAAATA-A-AT
* *
20858781 TGATAACGTAAACAAGTGAGAAAAAAATGTAAAATTAGTATCATTTAATGTAAAATAAGTATAAA
187 TGATAACGTAAACAAGTG-GAAAAAAATATAAAATTAGTATCATTTAATGTAAAATAAGTAAAAA
* * * * * *
20858846 TTATCGTAATATACTAAAAAATGTCATGACAATTTTAAACGTAATGAAAAATAAAAAAAATAATA
251 ATATCGTAACATACTAAAAAAAGTCATGACAATTCTAAACATAATGAAAAATAAAAAAAACAATA
* * * * * *
20858911 ATAATATATTATTATAACGTAAATAATTATATTGATAATATAAAATTTTAATTAATTATTATTTT
316 AAAAGATATTATTATAACATAAATAATTATATTGACAACATAAAATTTGAATTAATTATTATTTT
** *
20858976 TTAAAATATTTAAAGAAAATATATAAAAATTAAAAAAATAAATAGATAA
381 TTAAAATACATAAAGAAAATAGATAAAAATTAAAAAAATAAATAGATAA
20859025 AGCATATAAG
Statistics
Matches: 364, Mismatches: 51, Indels: 26
0.83 0.12 0.06
Matches are distributed among these distances:
444 5 0.01
445 7 0.02
446 18 0.05
447 12 0.03
448 85 0.23
449 159 0.44
450 36 0.10
451 25 0.07
452 17 0.05
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (451 bp):
GTAAAATGGATAAAAAATGTCATAATATACTAAAAAAGAACTATGACAATTTTAAATATATTGAA
AGTAAGAACAAACATAAAACAAAATATTGTAACATAAATAATTAAGCTAACAACATAAAATTTTA
ATTAATTACTGTTTTTGTATATATATAAAGAAAATAGCAAAAAAGTAAAAATAAATTGATAACGT
AAACAAGTGGAAAAAAATATAAAATTAGTATCATTTAATGTAAAATAAGTAAAAAATATCGTAAC
ATACTAAAAAAAGTCATGACAATTCTAAACATAATGAAAAATAAAAAAAACAATAAAAAGATATT
ATTATAACATAAATAATTATATTGACAACATAAAATTTGAATTAATTATTATTTTTTAAAATACA
TAAAGAAAATAGATAAAAATTAAAAAAATAAATAGATAATGTGAAATGAGTTTCATTTAGT
Found at i:20859090 original size:237 final size:232
Alignment explanation
Indices: 20858571--20859140 Score: 524
Period size: 235 Copynumber: 2.4 Consensus size: 232
20858561 ATAAATAGAT
* * * * * *
20858571 AATGTGAAATGAGTTTCATTTAGTGTAAAATTGAA--AAAAAGTGTCATAATATACTAAAAAAGA
1 AATGTAAAATTAGTATCATTTAATGTAAAA-T-AAGCAAAAAGTATCGTAATATACTAAAAAAG-
* * * * * * * *
20858634 GCTATTATAATTTTAAACGTAATTAAAGATAAGAACAATCATAAAAACAAAATATTGTAACATAA
63 TC-ATGATAATTTTAAACGTAATGAAAAATAAAAAAAATAATAAAAACAAAATATTATAACATAA
20858699 ATAATTAAGTTACAACATAAAATTTTAATTAATTATTTTTTTAAATATACAAGAAAATTAGCAAA
127 ATAATTAAGTTACAACATAAAATTTTAATTAATTATTTTTTTAAATATACAAGAAAATTA-CAAA
* * * * *
20858764 AAAGTAAAAATATATATTGATAACGTAAACAAGTGAGAAAAA
191 AAAGTAAAAAAATAAATAGATAAAGCAAACAAGTGAGAAAAA
* * *
20858806 AATGTAAAATTAGTATCATTTAATGTAAAATAAGTATAAATTATCGTAATATACTAAAAAATGTC
1 AATGTAAAATTAGTATCATTTAATGTAAAATAAGCAAAAAGTATCGTAATATACTAAAAAA-GTC
* * * * * *
20858871 ATGACAATTTTAAACGTAATGAAAAATAAAAAAAATAATAATAATATATTATTATAACGTAAATA
65 ATGATAATTTTAAACGTAATGAAAAATAAAAAAAATAATAAAAACAAAATATTATAACATAAATA
* *
20858936 ATTATA-TTGATAATATAAAATTTTAATTAATTATTATTTTTTAAAATATTTA-AAGAAAATATA
130 ATTA-AGTT-ACAACATAAAATTTTAATTAATTA-T-TTTTTT-AAATA--TACAAGAAAAT-TA
* * * * *
20858999 -TAAAAATTAAAAAAATAAATAGATAAAGCATATAAGTGAG-AATA
187 CAAAAAAGTAAAAAAATAAATAGATAAAGCAAACAAGTGAGAAAAA
* ** * * * *
20859043 AATGTAAAATTAGTATTATTTGGCT-TAAAATAGGCAAAAAGTATCGTAACACATTAAAAAAAGA
1 AATGTAAAATTAGTATCATTT-AATGTAAAATAAGCAAAAAGTATCGTAATATACT--AAAAA-A
* *
20859107 GTTATGATAATTTTAAATGTAATGAAAAAATAAA
62 GTCATGATAATTTTAAACGTAATG-AAAAATAAA
20859141 CATTGTAAGA
Statistics
Matches: 272, Mismatches: 47, Indels: 27
0.79 0.14 0.08
Matches are distributed among these distances:
233 2 0.01
234 59 0.22
235 72 0.26
236 2 0.01
237 52 0.19
238 37 0.14
239 34 0.12
240 14 0.05
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.32
Consensus pattern (232 bp):
AATGTAAAATTAGTATCATTTAATGTAAAATAAGCAAAAAGTATCGTAATATACTAAAAAAGTCA
TGATAATTTTAAACGTAATGAAAAATAAAAAAAATAATAAAAACAAAATATTATAACATAAATAA
TTAAGTTACAACATAAAATTTTAATTAATTATTTTTTTAAATATACAAGAAAATTACAAAAAAGT
AAAAAAATAAATAGATAAAGCAAACAAGTGAGAAAAA
Found at i:20859196 original size:237 final size:234
Alignment explanation
Indices: 20858642--20859201 Score: 528
Period size: 237 Copynumber: 2.4 Consensus size: 234
20858632 GAGCTATTAT
* * * * * * *
20858642 AATTTTAAACGTAATTAAAGATAAGAACAATCATAA-AAACAAAATATTGTAACA-TAAATAATT
1 AATTTTAAACGTAATGAAAAATAAAAAAAATAATAAGAAA-ATATTATTGTAA-AGTAAATAATT
* *
20858705 AAGTT-ACAACATAAAATTTTAATTAATTATTTTTTTAAATATACAAGAAAATTAGCAAAAAAGT
64 ATGTTGACAACTTAAAATTTTAATTAATTATTTTTTTAAATATACAAGAAAATTA-CAAAAAAGT
* * * * *
20858769 AAAAATATATATTGATAACGTAAACAAGTGAGAAAAAAATGTAAAATTAGTATCATTTAATGTAA
128 AAAAAAATAAATAGATAAAGCAAACAAGTGAGAAAAAAATGTAAAATTAGTATCATTTAATGTAA
* * * * * *
20858834 AATAAGTATAAATTATCGTAATATACTAAAAAATGTCATGAC
193 AATAAGCAAAAAGTATCGTAACACACTAAAAAAAGTCATGAC
* * * *
20858876 AATTTTAAACGTAATGAAAAATAAAAAAAATAATAATAATATATTATTATAACGTAAATAATTAT
1 AATTTTAAACGTAATGAAAAATAAAAAAAATAATAAGAAAATATTATTGTAAAGTAAATAATTAT
* * *
20858941 ATTGATAA-TATAAAATTTTAATTAATTATTATTTTTTAAAATATTTA-AAGAAAATATA-TAAA
66 GTTGACAACT-TAAAATTTTAATTAATTA-T-TTTTTT-AAATA--TACAAGAAAAT-TACAAAA
* * * * * **
20859003 AATTAAAAAAATAAATAGATAAAGCATATAAGTGAG-AATAAATGTAAAATTAGTATTATTTGGC
124 AAGTAAAAAAATAAATAGATAAAGCAAACAAGTGAGAAAAAAATGTAAAATTAGTATCATTT-AA
* * * *
20859067 T-TAAAATAGGCAAAAAGTATCGTAACACATTAAAAAAAGAGTTATGAT
188 TGTAAAATAAGCAAAAAGTATCGTAACACACT-AAAAAA-AGTCATGAC
* * * **
20859115 AATTTTAAATGTAATG-AAAA-AATAAACATTGTAAGAAAATATTATTGTAAAGTAAATAATTAT
1 AATTTTAAACGTAATGAAAAATAAAAAAAATAATAAGAAAATATTATTGTAAAGTAAATAATTAT
* *
20859178 GTTGACAACTTTAAATTTTGATTA
66 GTTGACAACTTAAAATTTTAATTA
20859202 CCTATTGTTT
Statistics
Matches: 262, Mismatches: 50, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
234 52 0.20
235 23 0.09
236 1 0.00
237 105 0.40
238 48 0.18
239 29 0.11
240 4 0.02
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (234 bp):
AATTTTAAACGTAATGAAAAATAAAAAAAATAATAAGAAAATATTATTGTAAAGTAAATAATTAT
GTTGACAACTTAAAATTTTAATTAATTATTTTTTTAAATATACAAGAAAATTACAAAAAAGTAAA
AAAATAAATAGATAAAGCAAACAAGTGAGAAAAAAATGTAAAATTAGTATCATTTAATGTAAAAT
AAGCAAAAAGTATCGTAACACACTAAAAAAAGTCATGAC
Found at i:20859865 original size:21 final size:22
Alignment explanation
Indices: 20859827--20859869 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
20859817 AACAAACCAT
20859827 AATAATATATTATTATAACATA
1 AATAATATATTATTATAACATA
20859849 AATAAT-TA-TATTGATAACATA
1 AATAATATATTATT-ATAACATA
20859870 CAATTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 10 0.50
22 6 0.30
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (22 bp):
AATAATATATTATTATAACATA
Found at i:20860333 original size:21 final size:20
Alignment explanation
Indices: 20860288--20860334 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
20860278 AAGAACAACA
*
20860288 GTAAAAATATATTATGTAAT
1 GTAAAAATATATGATGTAAT
*
20860308 ATAAATAAT-TATGATGATAAT
1 GTAAA-AATATATGATG-TAAT
20860329 GTAAAA
1 GTAAAA
20860335 TTTTTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (20 bp):
GTAAAAATATATGATGTAAT
Found at i:20860346 original size:917 final size:921
Alignment explanation
Indices: 20858605--20860317 Score: 1871
Period size: 917 Copynumber: 1.9 Consensus size: 921
20858595 GTAAAATTGA
* * * **
20858605 AAAAAAGTGTCATAATATACTAAAAAAGAGCTATTATAATTTTAAACGTAATTAAAGATAAGAAC
1 AAAAAAGTGTCATAACATACTAAAAAAGAGCTATGATAATTCTAAAAATAATTAAAGATAAGAAC
*
20858670 AATCATAAAAACAAAATATTGTAACATAAATAATTAAGTTACAACATAAAATTTTAATTAATTAT
66 AATCATAAAAACAAAATATTATAACATAAATAATTAAGTTACAACATAAAATTTTAATT-ATTAT
* ** * *
20858735 TTTTTTAAATATACAAGAAAATTAGCAAAAAAGTAAAAATATATATTGATAACGTAAACAAGTGA
130 TTTTGTAAATATACAAGAAAAACAGCAAAAAAG-AAAAACATATATTGACAACGTAAACAAGTGA
*
20858800 GAAAAAAATGTAAAATTAGTATCATTTAATGTAAAATAAGTATAAATTATCGTAATATACTAAAA
194 GAAAAAAATGTAAAATTAGTATCATTTAATATAAAATAAGTATAAATTATCGTAATATACTAAAA
* * * * * *
20858865 AATGTCATGACAATTTTAAACGTAATGAAAAATAAAAAAAATAATAATAATATATTATTATAACG
259 AAAGTCATAACAATTCTAAACATAATGAAAAATAAAAAAAACAATAATAATATATTATTATAACA
* * *
20858930 TAAATAATTATATTGATAATATAAAATTTTAATTAATTATTATTTTTTAAAATATTTAAAGAAAA
324 TAAATAATTATATTGATAACATAAAATTTTAATTAATTATTATTTTATAAAATATCTAAAGAAAA
* * **
20858995 TATATAAAAATTAAAAAAATAAATAGATAAAGCATATAAGTGAGAATAAATGTAAAATTAGTATT
389 TATATAAAAATTAAAAAAATAAATAGAT-AAGCATAAAAGTGAGAACAAATGTAAAATTAGTACC
** * *
20859060 ATTTGGCTTAAAATAGGCAAAAAGTATCGTAACACATTAAAAAAAGAGTTATGATAATTTTAAAT
453 ATTTGAATTAAAATAGGAAAAAAGTATCGTAACACATTAAAAAAAGAGTTATGATAATTATAAAT
* * * * * *
20859125 GTAATGAAAAAATAAACATTGTAAGAAAATATTATTGTAAAGTAAATAATTATGTTGACAACTTT
518 ATAATGAAAAAATAAAAATTGTAAGAAAATATTACTATAAAGTAAATAATTATGTTAACAACTTA
* * * *
20859190 AAATTTTGATTACCTATTGTTTATGTCAATATATAAAAAAAATAGCTAAAAAAAACAATTGATAA
583 AAATTTTAATTACCTATTATTTATATCAATATATAAAAAAAATAGCTAAAAAAAAAAATTGATAA
* ** *** * * *
20859255 TGTAAACAAGTAAAAATGCAAAATTAGCATCATTGGATGTGAAATGAGTATGAAGTGTTATAAAA
648 CGTAAACAAGTAAAAACACAAAATTAGCATCATTGGATAAAAAATAAGTATCAAATGTTATAAAA
* * * * ** * * * * * *
20859320 AACTAGGAAAGAGTTATGATAATTTTTAAATATATTAGAAATAAAGAATAACTGTAAGAATATAT
713 AACTAAGAAAAAGCTATGAAAATGCTAAAATATATGAAAAATAAAGAACAACAGTAAAAATATAT
* * *** * * **
20859385 TATTGTTTTATCTTGGTAATTTAAAATTTTAGCTAATTATTAATTTTTAAATTTATAAGGAATAT
778 TATTG-TTAATATAAATAATTTAAAATGTAAAATAATTATTAATTTTTAAATTTATAAGGAATAT
20859450 AACTAAAAATTAAAAAATAAATAGGTAACATAAAAATATGAAAAAAACATAAAATTATTATAATT
842 AACTAAAAATTAAAAAATAAATAGGTAACATAAAAATATGAAAAAAACATAAAATTATTATAATT
20859515 TGGCATAAAATGAGT
907 TGGCATAAAATGAGT
*
20859530 AAAAAA-TGTCATAACATATTAAGAAAA-AG-TAATGATAATTCTAAAAATAATTAAAGATAAGA
1 AAAAAAGTGTCATAACATACTAA-AAAAGAGCT-ATGATAATTCTAAAAATAATTAAAGATAAGA
* * ** *
20859592 ACAATTAT-AAAA-AAATTATTATAATGTAAATAATTAAGTTGCCAACATAAAATTTT-A-T-TT
64 ACAATCATAAAAACAAAATATTATAACATAAATAATTAAGTT-ACAACATAAAATTTTAATTATT
* * * * *
20859652 ATTTATTGTAAATATATAAGAAAAACAGCTAAAAA-AAAAACA-A-ATTGGCAATGTAAACATGT
128 ATTT-TTGTAAATATACAAGAAAAACAGCAAAAAAGAAAAACATATATTGACAACGTAAACAAGT
* * * * * *
20859714 GAGAAAAAAATGTAAAATTAGTATCATTTGATATAAAATTATGTATGAATTGTTGTAATAT-GTC
192 GAGAAAAAAATGTAAAATTAGTATCATTTAATATAAAA-TAAGTATAAATTATCGTAATATACT-
* * * *
20859778 AAAAAAAGTTATAACAATTCTAAACATAATGAAAACTAAAACAAACCATAATAATATATTATTAT
255 AAAAAAAGTCATAACAATTCTAAACATAATGAAAAATAAAAAAAACAATAATAATATATTATTAT
*
20859843 AACATAAATAATTATATTGATAACATACAATTTTAATTAATTATTATTTTAT-AAATATCT-AAG
320 AACATAAATAATTATATTGATAACATAAAATTTTAATTAATTATTATTTTATAAAATATCTAAAG
* * *
20859906 AAAA-ATAGTTAGAAATT-AAAAAATAAATTGGT-AGCATAAGCAAAG-GAGAACAAATGT-AAA
385 AAAATATA--TAAAAATTAAAAAAATAAATAGATAAGCAT-A--AAAGTGAGAACAAATGTAAAA
* * * *
20859966 TTAGTACCATTT-AATGTAAAAT-GGAAAAAAAGTATTGTAATACGTTAAGAAAA-AGTTATGAT
445 TTAGTACCATTTGAAT-TAAAATAGG-AAAAAAGTATCGTAACACATTAAAAAAAGAGTTATGAT
*
20860028 GATTATAAA-ATAATGAAAAGTAA-AAATAATTGTAA-AAAATATTACTATAAAGGT-AATAATT
508 AATTATAAATATAATGAAAA--AATAAA-AATTGTAAGAAAATATTACTATAAA-GTAAATAATT
** ** *
20860089 ATGTTAATGA-TGTAAAATTTTAATTATTTATTATTTATAT-AA-ATAT-AAAAAATTAGCTAAA
569 ATGTTAACAACT-TAAAATTTTAATTACCTATTATTTATATCAATATATAAAAAAAATAGCT-AA
* * * *
20860150 ATTAAAAATAAATTTATAACGTAAACAAGTGAGAAGTAACATAAAATTAGTATCATTTGA-AAAA
632 A--AAAAA-AAATTGATAACGTAAACAAGT-A-AA--AACACAAAATTAGCATCATTGGATAAAA
* ** *
20860214 AATAAGT-TACAAATGTTGTAGCACACTAAGAAAAAGCTAT-AAAATGCTAAACAT-TATGAAAA
690 AATAAGTAT-CAAATGTTATAAAAAACTAAGAAAAAGCTATGAAAATGCTAAA-ATATATGAAAA
20860276 AT-AAGAACAACAGTAAAAATATATTA-TG-TAATATAAATAATT
753 ATAAAGAACAACAGTAAAAATATATTATTGTTAATATAAATAATT
20860318 ATGATGATAA
Statistics
Matches: 652, Mismatches: 108, Indels: 69
0.79 0.13 0.08
Matches are distributed among these distances:
910 11 0.02
911 7 0.01
912 21 0.03
913 82 0.13
914 77 0.12
915 53 0.08
916 87 0.13
917 154 0.24
918 24 0.04
919 6 0.01
920 25 0.04
921 1 0.00
922 25 0.04
923 19 0.03
924 50 0.08
925 10 0.02
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.32
Consensus pattern (921 bp):
AAAAAAGTGTCATAACATACTAAAAAAGAGCTATGATAATTCTAAAAATAATTAAAGATAAGAAC
AATCATAAAAACAAAATATTATAACATAAATAATTAAGTTACAACATAAAATTTTAATTATTATT
TTTGTAAATATACAAGAAAAACAGCAAAAAAGAAAAACATATATTGACAACGTAAACAAGTGAGA
AAAAAATGTAAAATTAGTATCATTTAATATAAAATAAGTATAAATTATCGTAATATACTAAAAAA
AGTCATAACAATTCTAAACATAATGAAAAATAAAAAAAACAATAATAATATATTATTATAACATA
AATAATTATATTGATAACATAAAATTTTAATTAATTATTATTTTATAAAATATCTAAAGAAAATA
TATAAAAATTAAAAAAATAAATAGATAAGCATAAAAGTGAGAACAAATGTAAAATTAGTACCATT
TGAATTAAAATAGGAAAAAAGTATCGTAACACATTAAAAAAAGAGTTATGATAATTATAAATATA
ATGAAAAAATAAAAATTGTAAGAAAATATTACTATAAAGTAAATAATTATGTTAACAACTTAAAA
TTTTAATTACCTATTATTTATATCAATATATAAAAAAAATAGCTAAAAAAAAAAATTGATAACGT
AAACAAGTAAAAACACAAAATTAGCATCATTGGATAAAAAATAAGTATCAAATGTTATAAAAAAC
TAAGAAAAAGCTATGAAAATGCTAAAATATATGAAAAATAAAGAACAACAGTAAAAATATATTAT
TGTTAATATAAATAATTTAAAATGTAAAATAATTATTAATTTTTAAATTTATAAGGAATATAACT
AAAAATTAAAAAATAAATAGGTAACATAAAAATATGAAAAAAACATAAAATTATTATAATTTGGC
ATAAAATGAGT
Found at i:20860522 original size:15 final size:16
Alignment explanation
Indices: 20860492--20860524 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
20860482 TGATAATTTT
20860492 AAATAATAGATGATAA
1 AAATAATAGATGATAA
20860508 AAATAATAG-TGATAA
1 AAATAATAGATGATAA
20860523 AA
1 AA
20860525 TATTATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (16 bp):
AAATAATAGATGATAA
Found at i:20869104 original size:15 final size:16
Alignment explanation
Indices: 20869074--20869106 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
20869064 TGTTTGGTGT
*
20869074 ATAAAATTATGATAAG
1 ATAAAATTAGGATAAG
20869090 ATAAAA-TAGGATAAG
1 ATAAAATTAGGATAAG
20869105 AT
1 AT
20869107 GGTATTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.58, C:0.00, G:0.15, T:0.27
Consensus pattern (16 bp):
ATAAAATTAGGATAAG
Found at i:20873125 original size:40 final size:38
Alignment explanation
Indices: 20873078--20873174 Score: 108
Period size: 36 Copynumber: 2.6 Consensus size: 38
20873068 GTATATGATG
*
20873078 AACCAAAGATTTATTATATATATTTGAGAAAAAAAAAAAA
1 AACCAAAGATTTATTATATATATGTGAG--AAAAAAAAAA
* * * *
20873118 AACCAAAGATTTACTAT-T-TATGTGTGAAAAAGAAAG
1 AACCAAAGATTTATTATATATATGTGAGAAAAAAAAAA
*
20873154 AACCAAAAATTTATTATATAT
1 AACCAAAGATTTATTATATAT
20873175 GTATGAATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
36 23 0.48
37 1 0.02
38 7 0.15
39 1 0.02
40 16 0.33
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (38 bp):
AACCAAAGATTTATTATATATATGTGAGAAAAAAAAAA
Found at i:20873806 original size:8 final size:8
Alignment explanation
Indices: 20873793--20873839 Score: 58
Period size: 8 Copynumber: 5.4 Consensus size: 8
20873783 ACTTACAGAG
20873793 TTATAATT
1 TTATAATT
20873801 TTATAAAATT
1 TTAT--AATT
20873811 TTATAAAATT
1 TTAT--AATT
20873821 TTATAATT
1 TTATAATT
20873829 TTATAATT
1 TTATAATT
20873837 TTA
1 TTA
20873840 ATACTAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 19 0.51
10 18 0.49
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTATAATT
Found at i:20873812 original size:10 final size:10
Alignment explanation
Indices: 20873797--20873834 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
20873787 ACAGAGTTAT
20873797 AATTTTATAA
1 AATTTTATAA
20873807 AATTTTATAA
1 AATTTTATAA
20873817 AATTTTAT--
1 AATTTTATAA
20873825 AATTTTATAA
1 AATTTTATAA
20873835 TTTTAATACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.31
10 18 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
AATTTTATAA
Found at i:20873816 original size:18 final size:16
Alignment explanation
Indices: 20873793--20873839 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 16
20873783 ACTTACAGAG
20873793 TTATAATTTTATAAAATT
1 TTATAATTTTAT--AATT
20873811 TTATAAAATTTTATAATT
1 TTAT--AATTTTATAATT
20873829 TTATAATTTTA
1 TTATAATTTTA
20873840 ATACTAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 7 0.26
18 12 0.44
20 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATAATTTTATAATT
Found at i:20875300 original size:9 final size:9
Alignment explanation
Indices: 20875288--20875322 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
20875278 ATTTAATTGA
20875288 TTTTTTTAT
1 TTTTTTTAT
20875297 TTTTTTTAT
1 TTTTTTTAT
*
20875306 ATTTTTTCAT
1 -TTTTTTTAT
20875316 TTTTTTT
1 TTTTTTT
20875323 TTATCTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:20876127 original size:15 final size:15
Alignment explanation
Indices: 20876107--20876136 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
20876097 AATATAATAA
20876107 AATTTATTTATATTT
1 AATTTATTTATATTT
20876122 AATTTATTTATATTT
1 AATTTATTTATATTT
20876137 GATAATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AATTTATTTATATTT
Found at i:20876997 original size:2 final size:2
Alignment explanation
Indices: 20876990--20877032 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
20876980 ATTTATTTAT
* *
20876990 TA TA TA TA CA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20877032 T
1 T
20877033 TGGGTACGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:20898018 original size:2 final size:2
Alignment explanation
Indices: 20898013--20898043 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
20898003 TATTTGCAGG
*
20898013 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20898044 CTCTGTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:20902440 original size:2 final size:2
Alignment explanation
Indices: 20902433--20902462 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20902423 ATTTGACAAC
20902433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20902463 GGGTTTTAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20905272 original size:8 final size:8
Alignment explanation
Indices: 20905262--20905322 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
20905252 TAAGAGTTAC
*
20905262 ATACATAC
1 ATACATAT
20905270 ATACATAT
1 ATACATAT
20905278 AT--ATAT
1 ATACATAT
* *
20905284 AAATATAT
1 ATACATAT
*
20905292 ATATATAT
1 ATACATAT
*
20905300 ATATATAT
1 ATACATAT
*
20905308 ATACATAC
1 ATACATAT
20905316 ATACATA
1 ATACATA
20905323 GACAAAGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
6 5 0.11
8 41 0.89
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (8 bp):
ATACATAT
Found at i:20905276 original size:12 final size:12
Alignment explanation
Indices: 20905259--20905308 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
20905249 AAATAAGAGT
* *
20905259 TACATACATACA
1 TACATATATATA
20905271 TACATATATATA
1 TACATATATATA
*
20905283 TAAATATATATA
1 TACATATATATA
*
20905295 TATATATATATA
1 TACATATATATA
20905307 TA
1 TA
20905309 TACATACATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
TACATATATATA
Found at i:20905281 original size:2 final size:2
Alignment explanation
Indices: 20905274--20905310 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
20905264 ACATACATAC
*
20905274 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20905311 CATACATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:20906063 original size:14 final size:16
Alignment explanation
Indices: 20906036--20906065 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20906026 ACATATCCCT
20906036 TATATATTTAAAAAAA
1 TATATATTTAAAAAAA
20906052 TATA-ATTTAAAAAA
1 TATATATTTAAAAAA
20906066 GAAGTGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TATATATTTAAAAAAA
Found at i:20907726 original size:17 final size:17
Alignment explanation
Indices: 20907706--20907746 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
20907696 ATTTGATTCA
20907706 TATTTTTATTTATCTTT
1 TATTTTTATTTATCTTT
*
20907723 TATTTTTATTTATTTTT
1 TATTTTTATTTATCTTT
*
20907740 TGTTTTT
1 TATTTTT
20907747 GCTATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (17 bp):
TATTTTTATTTATCTTT
Found at i:20908057 original size:13 final size:14
Alignment explanation
Indices: 20908032--20908061 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
20908022 AAATCTCAAT
20908032 TTTAATGTTTTTTA
1 TTTAATGTTTTTTA
20908046 TTTAAT-TTTTTTA
1 TTTAATGTTTTTTA
20908059 TTT
1 TTT
20908062 TTAGGAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTAATGTTTTTTA
Found at i:20914843 original size:171 final size:171
Alignment explanation
Indices: 20914547--20914872 Score: 447
Period size: 171 Copynumber: 1.9 Consensus size: 171
20914537 ATGAAATTAT
* * * * * *
20914547 AAAAATACCCTTAAAGGTATTTTAATAATTTGACATTTCTAAGATCGAAGTTTTACGAAAAGCTT
1 AAAAATACCCTTAAAGGTATTTTAATAATTTGACATTCCCAAAATCAAAATTTTACAAAAAGCTT
* * * *
20914612 TAAATCATGATTTAATATTATTTGATAATTTTTAAAATTTTAAAAACTTTGATGATACCTCGGAA
66 TAAATCATGATTTAATATTATTTGATAATTTTCAAAATATTAAAAACTTTGATCATACCTCGAAA
* * *
20914677 GGTGTGAAATTATAAAATACCTTTTATTGCTAATTTCGTGA
131 GGTGTGAAATCACAAAATACATTTTATTGCTAATTTCGTGA
* * *
20914718 AAAAATACCCTTAAAGGTATTTTAATAATTTGACCTTCCCAAAATCAAAATTTTGCAAAAAGTTT
1 AAAAATACCCTTAAAGGTATTTTAATAATTTGACATTCCCAAAATCAAAATTTTACAAAAAGCTT
* ** * *
20914783 TAGATCATGATTTAATATTATTTGATGGTTTTCGAAATATTGAAAA-TGTTGATCATACCTCGAA
66 TAAATCATGATTTAATATTATTTGATAATTTTCAAAATATTAAAAACT-TTGATCATACCTCGAA
20914847 AGGTGTGAAATCACAAAATACATTTT
130 AGGTGTGAAATCACAAAATACATTTT
20914873 GTTACTGATC
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
170 1 0.01
171 132 0.99
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (171 bp):
AAAAATACCCTTAAAGGTATTTTAATAATTTGACATTCCCAAAATCAAAATTTTACAAAAAGCTT
TAAATCATGATTTAATATTATTTGATAATTTTCAAAATATTAAAAACTTTGATCATACCTCGAAA
GGTGTGAAATCACAAAATACATTTTATTGCTAATTTCGTGA
Found at i:20918613 original size:30 final size:31
Alignment explanation
Indices: 20918579--20918643 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
20918569 CTTCTTAATA
**
20918579 TATAGTTAGAAAAAT-GGAGAGTTTTCTTCT
1 TATAGTTAGAAAAATACAAGAGTTTTCTTCT
*
20918609 TATAGTTAGAAAACTACAAGAGTTTTCTTCT
1 TATAGTTAGAAAAATACAAGAGTTTTCTTCT
20918640 TATA
1 TATA
20918644 TTAAAACTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 14 0.45
31 17 0.55
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.40
Consensus pattern (31 bp):
TATAGTTAGAAAAATACAAGAGTTTTCTTCT
Found at i:20920837 original size:29 final size:29
Alignment explanation
Indices: 20920783--20920842 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
20920773 AAATTATCCT
* *
20920783 AAAATATTTAATATGATGCTTAAATTTTA
1 AAAATATTTAATATGATACTTAAATTATA
* * *
20920812 AAAATTTTTAATATGATATTTTAATTATA
1 AAAATATTTAATATGATACTTAAATTATA
20920841 AA
1 AA
20920843 TTTATTAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (29 bp):
AAAATATTTAATATGATACTTAAATTATA
Found at i:20920920 original size:108 final size:105
Alignment explanation
Indices: 20920788--20921004 Score: 308
Period size: 108 Copynumber: 2.0 Consensus size: 105
20920778 ATCCTAAAAT
* *
20920788 ATTTAATATGATGCTTAAATTTTAAAAATTTTTAATATGATATTTTAATTATAAATTTATTAACT
1 ATTTAATATGATACTTAAACTTTAAAAATTTTTAATATGATATTTTAATTATAAATTTATTAACT
* *
20920853 AATGTAATATGAAAAAAAAATTATTTGTACATCACTTATCATC
66 AATATAATAT--AAAAAAAATTATTTAT-CATCACTTATCATC
* * *
20920896 ATTTAATGTGATATTTAAACTTTAAAAATTTTTAATATGATATTTTAATTATAAATTTATTAATT
1 ATTTAATATGATACTTAAACTTTAAAAATTTTTAATATGATATTTTAATTATAAATTTATTAACT
* ** *
20920961 AATATGATATTTAAAAAATTATTTATTATCACTTATCATC
66 AATATAATATAAAAAAAATTATTTATCATCACTTATCATC
20921001 ATTT
1 ATTT
20921005 GAAATTAACA
Statistics
Matches: 98, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
105 17 0.17
106 13 0.13
108 68 0.69
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (105 bp):
ATTTAATATGATACTTAAACTTTAAAAATTTTTAATATGATATTTTAATTATAAATTTATTAACT
AATATAATATAAAAAAAATTATTTATCATCACTTATCATC
Found at i:20920972 original size:19 final size:19
Alignment explanation
Indices: 20920927--20920973 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 19
20920917 TTAAAAATTT
20920927 TTAATATGATA-TT-TTAA
1 TTAATATGATATTTATTAA
20920944 TT-ATA--A-ATTTATTAA
1 TTAATATGATATTTATTAA
20920959 TTAATATGATATTTA
1 TTAATATGATATTTA
20920974 AAAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
13 1 0.04
14 3 0.12
15 6 0.25
16 6 0.25
17 2 0.08
18 1 0.04
19 5 0.21
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (19 bp):
TTAATATGATATTTATTAA
Found at i:20920988 original size:27 final size:31
Alignment explanation
Indices: 20920923--20920988 Score: 79
Period size: 32 Copynumber: 2.3 Consensus size: 31
20920913 AACTTTAAAA
20920923 ATTT-TTAATATGATATTTTAATTATAAATTT
1 ATTTATTAATATGATATTTTAA-TATAAATTT
*
20920954 ATTAATTAATATGATA-TTTAA-A-AAA-TT
1 ATTTATTAATATGATATTTTAATATAAATTT
20920981 ATTTATTA
1 ATTTATTA
20920989 TCACTTATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 9 0.28
28 3 0.09
29 1 0.03
31 8 0.25
32 11 0.34
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (31 bp):
ATTTATTAATATGATATTTTAATATAAATTT
Found at i:20927472 original size:14 final size:14
Alignment explanation
Indices: 20927450--20927500 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
20927440 TATTAATTAA
*
20927450 AAATTTTATAATTT
1 AAATATTATAATTT
* *
20927464 AAATATTAT-GTTA
1 AAATATTATAATTT
* *
20927477 AAAAATTTTAATTT
1 AAATATTATAATTT
20927491 AAATATTATA
1 AAATATTATA
20927501 TTATAATTTA
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
AAATATTATAATTT
Found at i:20927479 original size:27 final size:27
Alignment explanation
Indices: 20927440--20927503 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
20927430 AATAAATATT
20927440 TATTA-ATTAAAAATTTTATAATTTAAA
1 TATTATATTAAAAATTTT-TAATTTAAA
* *
20927467 TATTATGTTAAAAAATTTTAATTTAAA
1 TATTATATTAAAAATTTTTAATTTAAA
20927494 TATTATATTA
1 TATTATATTA
20927504 TAATTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TATTATATTAAAAATTTTTAATTTAAA
Found at i:20928153 original size:21 final size:21
Alignment explanation
Indices: 20928136--20928198 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
20928126 ATAATAATGA
20928136 TAAAATT-AATTATTATAATAT
1 TAAAATTGAA-TATTATAATAT
*
20928157 TAAAATTGAATATTATAATAG
1 TAAAATTGAATATTATAATAT
* *
20928178 TAAGATT-AAAATTAATAATAT
1 TAAAATTGAATATT-ATAATAT
20928199 ATATTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.14
21 29 0.81
22 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (21 bp):
TAAAATTGAATATTATAATAT
Found at i:20928893 original size:5 final size:5
Alignment explanation
Indices: 20928885--20928926 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
20928875 CGAATCGAGC
* *
20928885 TTAAA TTAAA -AAAA TTAAA TTAAA TCAAA TTTAAA TTAAA TT
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA -TTAAA TTAAA TT
20928927 TTGAATCTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
4 3 0.10
5 24 0.77
6 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
TTAAA
Found at i:20928920 original size:16 final size:15
Alignment explanation
Indices: 20928885--20928925 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
20928875 CGAATCGAGC
20928885 TTAAATTAAA-AAAA
1 TTAAATTAAATAAAA
*
20928899 TTAAATTAAATCAAAT
1 TTAAATTAAAT-AAAA
20928915 TTAAATTAAAT
1 TTAAATTAAAT
20928926 TTTGAATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 10 0.42
16 14 0.58
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAATTAAATAAAA
Found at i:20928939 original size:14 final size:14
Alignment explanation
Indices: 20928920--20928947 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20928910 CAAATTTAAA
20928920 TTAAATTTTGAATC
1 TTAAATTTTGAATC
20928934 TTAAATTTTGAATC
1 TTAAATTTTGAATC
20928948 AAATTCAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
TTAAATTTTGAATC
Found at i:20935571 original size:21 final size:20
Alignment explanation
Indices: 20935558--20935595 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
20935548 AAAATCTTAA
20935558 TTAAAAAT-AATAAAAATATT
1 TTAAAAATAAAT-AAAATATT
20935578 TTAAAAATAAATAAAATA
1 TTAAAAATAAATAAAATA
20935596 AAAAAATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TTAAAAATAAATAAAATATT
Found at i:20938810 original size:23 final size:24
Alignment explanation
Indices: 20938784--20938831 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
20938774 GAAGAAAGGT
20938784 AAATAAAACA-AAAAAAGAAAAAA
1 AAATAAAACAGAAAAAAGAAAAAA
* *
20938807 AAATAGAAGAGAAAAAAGAAAAAA
1 AAATAAAACAGAAAAAAGAAAAAA
20938831 A
1 A
20938832 GATGAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.83, C:0.02, G:0.10, T:0.04
Consensus pattern (24 bp):
AAATAAAACAGAAAAAAGAAAAAA
Found at i:20938833 original size:17 final size:17
Alignment explanation
Indices: 20938788--20938844 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
20938778 AAAGGTAAAT
*
20938788 AAAACAAAAAAAGA-AA
1 AAAAGAAAAAAAGAGAA
* *
20938804 AAAA-AATAGAAGAGAA
1 AAAAGAAAAAAAGAGAA
20938820 AAAAGAAAAAAAGATGAA
1 AAAAGAAAAAAAGA-GAA
*
20938838 TAAAGAA
1 AAAAGAA
20938845 TGAATGAGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 7 0.21
16 10 0.30
17 7 0.21
18 9 0.27
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAGAAAAAAAGAGAA
Found at i:20940131 original size:8 final size:8
Alignment explanation
Indices: 20940120--20940257 Score: 53
Period size: 8 Copynumber: 16.0 Consensus size: 8
20940110 TCAAATTCAT
20940120 AAAAATAA
1 AAAAATAA
20940128 AAAAATAA
1 AAAAATAA
*
20940136 TAAAAACAACA
1 -AAAAA-TA-A
*
20940147 AAAACCAAAA
1 AAAA--ATAA
20940157 CAAAAATAA
1 -AAAAATAA
*
20940166 TAAAAACAA
1 -AAAAATAA
* *
20940175 ACAAACAA
1 AAAAATAA
*
20940183 ATAAAACAA
1 A-AAAATAA
*
20940192 AACAAA-AC
1 AA-AAATAA
20940200 AAAAATCAA
1 AAAAAT-AA
*
20940209 TAAAATAA
1 AAAAATAA
*
20940217 ATAAATAA
1 AAAAATAA
* *
20940225 ACAAACAA
1 AAAAATAA
* *
20940233 AATAACAA
1 AAAAATAA
20940241 CAAAAATAA
1 -AAAAATAA
20940250 AAAAATAA
1 AAAAATAA
20940258 CAACAAAAAA
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
7 3 0.03
8 48 0.47
9 37 0.36
10 6 0.06
11 7 0.07
12 1 0.01
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAATAA
Found at i:20940164 original size:30 final size:32
Alignment explanation
Indices: 20940128--20940193 Score: 100
Period size: 30 Copynumber: 2.1 Consensus size: 32
20940118 ATAAAAATAA
*
20940128 AAAAATAATAAAAAC-AACAAA-AACCAAAAC
1 AAAAATAATAAAAACAAACAAACAAACAAAAC
*
20940158 AAAAATAATAAAAACAAACAAACAAATAAAAC
1 AAAAATAATAAAAACAAACAAACAAACAAAAC
20940190 AAAA
1 AAAA
20940194 CAAAACAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 15 0.47
31 6 0.19
32 11 0.34
ACGTcount: A:0.79, C:0.14, G:0.00, T:0.08
Consensus pattern (32 bp):
AAAAATAATAAAAACAAACAAACAAACAAAAC
Found at i:20940204 original size:42 final size:41
Alignment explanation
Indices: 20940137--20940267 Score: 126
Period size: 42 Copynumber: 3.1 Consensus size: 41
20940127 AAAAAATAAT
20940137 AAAAACAACAAAAACCAAAACAAAAATAATAAAAACAAACAAAC
1 AAAAA-AAC-AAAA-CAAAACAAAAATAATAAAAACAAACAAAC
* * *
20940181 AAATAAAACAAAACAAAACAAAAATCAAT-AAAATAAATAAAT
1 AAA-AAAACAAAACAAAACAAAAAT-AATAAAAACAAACAAAC
* * *
20940223 AAACAAACAAAATAACAACAAAAATAA-AAAAA-TAAC-AAC
1 AAAAAAACAAAACAA-AACAAAAATAATAAAAACAAACAAAC
20940262 AAAAAA
1 AAAAAA
20940268 TAGCTCTTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
39 7 0.09
40 2 0.03
41 16 0.22
42 34 0.46
43 7 0.09
44 6 0.08
45 2 0.03
ACGTcount: A:0.78, C:0.14, G:0.00, T:0.08
Consensus pattern (41 bp):
AAAAAAACAAAACAAAACAAAAATAATAAAAACAAACAAAC
Found at i:20940256 original size:20 final size:19
Alignment explanation
Indices: 20940120--20940266 Score: 86
Period size: 21 Copynumber: 7.3 Consensus size: 19
20940110 TCAAATTCAT
*
20940120 AAAAATAAAAAAATAATAA
1 AAAAATAAAAAAATAACAA
*
20940139 AAACAACAAAAACCAA-AACAA
1 AAA-AATAAAAA--AATAACAA
*
20940160 AAATAATAAAAACA-AACAA
1 AAA-AATAAAAAAATAACAA
* *
20940179 ACAAATAAAACAAA-ACAAAA
1 AAAAATAAAA-AAATA-ACAA
*
20940199 CAAAAATCAATAAAATAA-ATA
1 -AAAAAT-AAAAAAATAACA-A
*
20940220 AATAAACAAACAAAATAACAA
1 AA-AAATAAA-AAAATAACAA
20940241 CAAAAATAAAAAAATAACAA
1 -AAAAATAAAAAAATAACAA
20940261 CAAAAA
1 -AAAAA
20940267 ATAGCTCTTT
Statistics
Matches: 102, Mismatches: 13, Indels: 25
0.73 0.09 0.18
Matches are distributed among these distances:
18 7 0.07
19 14 0.14
20 31 0.30
21 41 0.40
22 9 0.09
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (19 bp):
AAAAATAAAAAAATAACAA
Found at i:20944965 original size:20 final size:20
Alignment explanation
Indices: 20944933--20944973 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
20944923 AAATTAATAT
20944933 AATTATATAATATATATTAA
1 AATTATATAATATATATTAA
20944953 AATTA-ATATATATATATTAA
1 AATTATATA-ATATATATTAA
20944973 A
1 A
20944974 TACATATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTATATAATATATATTAA
Found at i:20944968 original size:29 final size:31
Alignment explanation
Indices: 20944922--20944984 Score: 87
Period size: 29 Copynumber: 2.1 Consensus size: 31
20944912 TTTGATACTA
*
20944922 AAAATTAATATAATTATA-T-AATATATATT
1 AAAATTAATATAATTATATTAAATACATATT
20944951 AAAATTAATAT-ATATATATTAAATACATATT
1 AAAATTAATATAAT-TATATTAAATACATATT
20944982 AAA
1 AAA
20944985 TGGGTATTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 2 0.07
29 15 0.50
30 1 0.03
31 12 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (31 bp):
AAAATTAATATAATTATATTAAATACATATT
Found at i:20944981 original size:31 final size:30
Alignment explanation
Indices: 20944920--20944984 Score: 62
Period size: 31 Copynumber: 2.1 Consensus size: 30
20944910 AATTTGATAC
* *
20944920 TAAAAATTA-ATATAATTATATAATATATAT
1 TAAAAATAATATATAATT-TATAATACATAT
*
20944950 TAAAATTAATATATATATATTA-AATACATAT
1 TAAAAATAATATATA-AT-TTATAATACATAT
20944981 TAAA
1 TAAA
20944985 TGGGTATTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
30 7 0.24
31 17 0.59
32 4 0.14
33 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
TAAAAATAATATATAATTTATAATACATAT
Found at i:20945026 original size:27 final size:27
Alignment explanation
Indices: 20944997--20945047 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
20944987 GGTATTAGAT
* *
20944997 TTTTTATTTTTTTAATATGT-AAGTAC
1 TTTTTATATTATTAATATGTCAAGTAC
20945023 TTTTTATATTATTAATATGTCAAGT
1 TTTTTATATTATTAATATGTCAAGT
20945048 TTATTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (27 bp):
TTTTTATATTATTAATATGTCAAGTAC
Found at i:20945335 original size:26 final size:26
Alignment explanation
Indices: 20945291--20945344 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
20945281 ATTTAAATAC
* *
20945291 ATTTTATAATTCGTGTCA-TATTCAT
1 ATTTTATAATTCGTATCATTATACAT
*
20945316 ATTTTAATAATTTGTATCATTATACAT
1 ATTTT-ATAATTCGTATCATTATACAT
20945343 AT
1 AT
20945345 AAAATATGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.21
26 11 0.46
27 8 0.33
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (26 bp):
ATTTTATAATTCGTATCATTATACAT
Found at i:20946443 original size:14 final size:14
Alignment explanation
Indices: 20946420--20946451 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
20946410 AAGTTTTTGA
20946420 ATTT-TATAATTTT
1 ATTTATATAATTTT
20946433 ATTTATATAATTTT
1 ATTTATATAATTTT
20946447 -TTTAT
1 ATTTAT
20946452 TTTTATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTATATAATTTT
Found at i:20946453 original size:22 final size:22
Alignment explanation
Indices: 20946419--20946462 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
20946409 AAAGTTTTTG
20946419 AATTTTATAA-TTTTATTTATAT
1 AATTTTATAATTTTTA-TTATAT
* *
20946441 AATTTTTTTATTTTTATTATAT
1 AATTTTATAATTTTTATTATAT
20946463 TTAAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
AATTTTATAATTTTTATTATAT
Found at i:20946500 original size:30 final size:30
Alignment explanation
Indices: 20946413--20946561 Score: 135
Period size: 30 Copynumber: 5.0 Consensus size: 30
20946403 TAAAAAAAAG
* * *
20946413 TTTTTGAATTTTATAATTT-TATTTATATAAT
1 TTTTT-AATTTT-TAATTTATATCTAAATAAA
* *
20946444 TTTTTTATTTTT-A-TTATATTTAAATAAA
1 TTTTTAATTTTTAATTTATATCTAAATAAA
*
20946472 TTTTTAATTTTTAATTTACATCTAAATAAA
1 TTTTTAATTTTTAATTTATATCTAAATAAA
* * *
20946502 TTCTTAAATTTTAATTTATATCTAAATAAG
1 TTTTTAATTTTTAATTTATATCTAAATAAA
* * *
20946532 TTCTTAAAATTTTAATTTATACCT-AATAAA
1 TT-TTTAATTTTTAATTTATATCTAAATAAA
20946562 CCCCTAACAT
Statistics
Matches: 100, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.22
29 2 0.02
30 51 0.51
31 23 0.23
ACGTcount: A:0.38, C:0.05, G:0.01, T:0.56
Consensus pattern (30 bp):
TTTTTAATTTTTAATTTATATCTAAATAAA
Found at i:20946542 original size:31 final size:30
Alignment explanation
Indices: 20946457--20946561 Score: 140
Period size: 30 Copynumber: 3.5 Consensus size: 30
20946447 TTTATTTTTA
* * *
20946457 TTATATTTAAATAAATTTTTAATTTTTAAT
1 TTATATCTAAATAAATTCTTAAATTTTAAT
*
20946487 TTACATCTAAATAAATTCTTAAATTTTAAT
1 TTATATCTAAATAAATTCTTAAATTTTAAT
*
20946517 TTATATCTAAATAAGTTCTTAAAATTTTAAT
1 TTATATCTAAATAAATTCTT-AAATTTTAAT
*
20946548 TTATACCT-AATAAA
1 TTATATCTAAATAAA
20946562 CCCCTAACAT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
30 49 0.74
31 17 0.26
ACGTcount: A:0.43, C:0.07, G:0.01, T:0.50
Consensus pattern (30 bp):
TTATATCTAAATAAATTCTTAAATTTTAAT
Found at i:20947608 original size:2 final size:2
Alignment explanation
Indices: 20947601--20947642 Score: 59
Period size: 2 Copynumber: 20.5 Consensus size: 2
20947591 TTACTGGAGT
20947601 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA GTA TA GTA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA -TA TA T
20947643 GGGTAATGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 1 0.03
2 32 0.86
3 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20950902 original size:35 final size:36
Alignment explanation
Indices: 20950836--20950907 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
20950826 GTGATTGTAG
20950836 CATGTGCAGTATGTTTTCTGAAAACACCAAATTGCT
1 CATGTGCAGTATGTTTTCTGAAAACACCAAATTGCT
20950872 CATGTGCAGTATGTTTTCT-AAAACACCAAATTGCT
1 CATGTGCAGTATGTTTTCTGAAAACACCAAATTGCT
20950907 C
1 C
20950908 TGTTTAAGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 17 0.47
36 19 0.53
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (36 bp):
CATGTGCAGTATGTTTTCTGAAAACACCAAATTGCT
Found at i:20952357 original size:92 final size:89
Alignment explanation
Indices: 20952201--20952383 Score: 269
Period size: 92 Copynumber: 2.0 Consensus size: 89
20952191 ATTTCATATA
**
20952201 TTCACATATTAAAAAGGAACATTTTCTTGACTGCATGCCTCTAGCAGCCTGAGCAAAGGATCTAG
1 TTCACATATTAAAAAGGAACATTTTCTTGACCACATGCCTCTAGCAGCCTGAGCAAAGGATCTAG
*
20952266 AAATTGTTGAATTTTATAGGAGTT
66 AAATTGTTGAATTTTATAGGAATT
* * *
20952290 TTCACATATTAAAAAGGAGCATGTTGTTCTTGACCACTTGCCT-TCAGCAGCCTGAGCAAAGGTT
1 TTCACATATTAAAAAGGAACA--TT-TTCTTGACCACATGCCTCT-AGCAGCCTGAGCAAAGGAT
20952354 CTAGAAATTGTTGAATTTTATAGGAATT
62 CTAGAAATTGTTGAATTTTATAGGAATT
20952382 TT
1 TT
20952384 GTGGTGTTTA
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
89 20 0.24
91 3 0.04
92 61 0.73
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (89 bp):
TTCACATATTAAAAAGGAACATTTTCTTGACCACATGCCTCTAGCAGCCTGAGCAAAGGATCTAG
AAATTGTTGAATTTTATAGGAATT
Found at i:20954441 original size:22 final size:21
Alignment explanation
Indices: 20954416--20954459 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
20954406 AAGAAAATCG
*
20954416 AATTCTTTTAATTTTCTTTTAA
1 AATTCTTTTAATATT-TTTTAA
* *
20954438 AATTTTTTTTATATTTTTTAA
1 AATTCTTTTAATATTTTTTAA
20954459 A
1 A
20954460 TAAATTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (21 bp):
AATTCTTTTAATATTTTTTAA
Found at i:20954513 original size:15 final size:15
Alignment explanation
Indices: 20954493--20954524 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
20954483 ATTATTATTA
20954493 TTATTGTTGTTGTTG
1 TTATTGTTGTTGTTG
20954508 TTATTGTTGTTGTTG
1 TTATTGTTGTTGTTG
20954523 TT
1 TT
20954525 TAAATGAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.25, T:0.69
Consensus pattern (15 bp):
TTATTGTTGTTGTTG
Found at i:20954994 original size:22 final size:21
Alignment explanation
Indices: 20954969--20955045 Score: 68
Period size: 22 Copynumber: 3.6 Consensus size: 21
20954959 TAATATCATT
20954969 AAAAAATAAAAAT-AACAAATAA
1 AAAAAATAAAAATCAAC--ATAA
*
20954991 AAAACATAAAAATCAACATAA
1 AAAAAATAAAAATCAACATAA
* *
20955012 AATAAAT-AAAATCAAAATCAA
1 AAAAAATAAAAATCAACAT-AA
*
20955033 AACAAAAAAAAAA
1 AA-AAAATAAAAA
20955046 AAAGAGAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
20 10 0.22
21 13 0.29
22 15 0.33
23 7 0.16
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (21 bp):
AAAAAATAAAAATCAACATAA
Found at i:20955001 original size:21 final size:21
Alignment explanation
Indices: 20954969--20955023 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
20954959 TAATATCATT
20954969 AAAAAATAAAAATAACAA-ATA
1 AAAAAAT-AAAATAACAACATA
*
20954990 AAAAACATAAAA-ATCAACATA
1 AAAAA-ATAAAATAACAACATA
20955011 AAATAAATAAAAT
1 AAA-AAATAAAAT
20955024 CAAAATCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 4 0.14
21 21 0.72
22 4 0.14
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.16
Consensus pattern (21 bp):
AAAAAATAAAATAACAACATA
Found at i:20955042 original size:20 final size:19
Alignment explanation
Indices: 20954991--20955042 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
20954981 TAACAAATAA
* *
20954991 AAAACATAAAAATCAACAT
1 AAAACAAAAAAATCAAAAT
*
20955010 AAAATAAATAAAATCAAAAT
1 AAAACAAA-AAAATCAAAAT
20955030 CAAAACAAAAAAA
1 -AAAACAAAAAAA
20955043 AAAAAAGAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 6 0.22
20 14 0.52
21 7 0.26
ACGTcount: A:0.75, C:0.12, G:0.00, T:0.13
Consensus pattern (19 bp):
AAAACAAAAAAATCAAAAT
Found at i:20955048 original size:26 final size:26
Alignment explanation
Indices: 20954970--20955048 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 26
20954960 AATATCATTA
* *
20954970 AAAAATAAAAATAACAAATAAAAAACAT
1 AAAAATCAAAATAA-AAA-AAAAAAAAT
* * *
20954998 AAAAATCAACATAAAATAAATAAAAT
1 AAAAATCAAAATAAAAAAAAAAAAAT
* *
20955024 CAAAATCAAAACAAAAAAAAAAAAA
1 AAAAATCAAAATAAAAAAAAAAAAA
20955049 GAGAAAACCT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 27 0.66
27 2 0.05
28 12 0.29
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (26 bp):
AAAAATCAAAATAAAAAAAAAAAAAT
Found at i:20955977 original size:22 final size:23
Alignment explanation
Indices: 20955937--20955979 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
20955927 TGTGTAGAAG
*
20955937 ATGAAAAAAAGATATCAGAAAAA
1 ATGAAAAAAAGATACCAGAAAAA
*
20955960 ATGAAAAAAA-ATGCCAGAAA
1 ATGAAAAAAAGATACCAGAAA
20955980 TAATAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.67, C:0.07, G:0.14, T:0.12
Consensus pattern (23 bp):
ATGAAAAAAAGATACCAGAAAAA
Found at i:20967296 original size:11 final size:11
Alignment explanation
Indices: 20967264--20967319 Score: 60
Period size: 11 Copynumber: 5.0 Consensus size: 11
20967254 ATTTTAAATC
*
20967264 ATATCATATTT
1 ATATTATATTT
*
20967275 ATATT-TTTTT
1 ATATTATATTT
20967285 ATATTATATTT
1 ATATTATATTT
*
20967296 ATATCATATCATT
1 ATATTATAT--TT
20967309 ATATTATATTT
1 ATATTATATTT
20967320 TGAATGATCA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
10 9 0.24
11 18 0.49
13 10 0.27
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (11 bp):
ATATTATATTT
Found at i:20968153 original size:33 final size:33
Alignment explanation
Indices: 20968116--20968178 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
20968106 TACTTTAGAG
20968116 GCGTTTGTATATGAAAACGCCTCTATATTAGCA
1 GCGTTTGTATATGAAAACGCCTCTATATTAGCA
* *
20968149 GCGTTTGTATCTGAAAATGCCTCTATATTA
1 GCGTTTGTATATGAAAACGCCTCTATATTA
20968179 ATAGCATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (33 bp):
GCGTTTGTATATGAAAACGCCTCTATATTAGCA
Found at i:20968189 original size:33 final size:33
Alignment explanation
Indices: 20968119--20968193 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
20968109 TTTAGAGGCG
* * *
20968119 TTTGTATATGAAAACGCCTCTATATTAGCAGCG
1 TTTGTATCTGAAAACGCCTCTATATTAACAGCA
* *
20968152 TTTGTATCTGAAAATGCCTCTATATTAATAGCA
1 TTTGTATCTGAAAACGCCTCTATATTAACAGCA
20968185 TTTGTATCT
1 TTTGTATCT
20968194 TTCAAATGTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (33 bp):
TTTGTATCTGAAAACGCCTCTATATTAACAGCA
Found at i:20968503 original size:134 final size:135
Alignment explanation
Indices: 20968150--20968504 Score: 419
Period size: 136 Copynumber: 2.6 Consensus size: 135
20968140 ATATTAGCAG
* * * * *
20968150 CGTTTGTATCTGAAAATGCCTCTATATTAATAGCATTTGTATCTTTCAAATGTCGCTAATTTAGT
1 CGTTTGTATCTGAAAATGCTTCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTAGT
* * * **
20968215 GACATTTTTATGAAAAAAA-ATGCTGTTGCTTTGGTGACGTTTGTAACTGAAACTGTCGTTACTT
66 AACATTTTTATGAAAAAAATAT-CTGTTGCTTTGGTGACATTTGTAACTGAAACCGTCACTACTT
*
20968279 TAGAGG
130 TAGAGA
* * *
20968285 CGTTTTGTATCTGAAAATG-TCTCTATATTAGCGACATTTGTATCTTTGAGATGTTGCTAATTTA
1 CG-TTTGTATCTGAAAATGCT-TCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTA
* * * *
20968349 GTAGCATTTTTATGAGAAAAATAT-TGTTGCTTTGGTGGCATTTGTAACTTAAACCGTCACTACT
64 GTAACATTTTTATGAAAAAAATATCTGTTGCTTTGGTGACATTTGTAACTGAAACCGTCACTACT
20968413 TTAGAGA
129 TTAGAGA
* * * * * * *
20968420 TGTTTGTATATGAAAACGCTTCTATATTAGTGGCGTTTGTATCTTTGAGACGTCACTAATTTAAT
1 CGTTTGTATCTGAAAATGCTTCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTAGT
* *
20968485 AACATTTTTTTTAAAAAAAT
66 AACATTTTTATGAAAAAAAT
20968505 GCCATTACTT
Statistics
Matches: 184, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
134 68 0.37
135 44 0.24
136 70 0.38
137 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.41
Consensus pattern (135 bp):
CGTTTGTATCTGAAAATGCTTCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTAGT
AACATTTTTATGAAAAAAATATCTGTTGCTTTGGTGACATTTGTAACTGAAACCGTCACTACTTT
AGAGA
Found at i:20968516 original size:134 final size:134
Alignment explanation
Indices: 20968150--20968528 Score: 418
Period size: 134 Copynumber: 2.8 Consensus size: 134
20968140 ATATTAGCAG
* * * * *
20968150 CGTTTGTATCTGAAAATGCCTCTATATTAATAGCATTTGTATCTTTCAAATGTCGCTAATTTAGT
1 CGTTTGTATCTGAAAATGCTTCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTAGT
* * * **
20968215 GACATTTTTATGAAAAAAAATGCTGTTGCTTTGGTGACGTTTGTAACTGAAACTGTCGTTACTTT
66 AACATTTTT-TTAAAAAAAATGCTGTTGCTTTGGTGACGTTTGTAACTGAAACCGTCACTACTTT
*
20968280 AGAGG
130 AGAGA
* * *
20968285 CGTTTTGTATCTGAAAATG-TCTCTATATTAGCGACATTTGTATCTTTGAGATGTTGCTAATTTA
1 CG-TTTGTATCTGAAAATGCT-TCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTA
* * * * ** * * *
20968349 GTAGCATTTTTATGAGAAAAATATTGTTGCTTTGGTGGCATTTGTAACTTAAACCGTCACTACTT
64 GTAACATTTTTTTAAAAAAAATGCTGTTGCTTTGGTGACGTTTGTAACTGAAACCGTCACTACTT
20968414 TAGAGA
129 TAGAGA
* * * * * * *
20968420 TGTTTGTATATGAAAACGCTTCTATATTAGTGGCGTTTGTATCTTTGAGACGTCACTAATTTAAT
1 CGTTTGTATCTGAAAATGCTTCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTAGT
* ** *
20968485 AACATTTTTTTTAAAAAAATGCCATTACTTTGGTGACGTTTGTA
66 AACATTTTTTTAAAAAAAATGCTGTTGCTTTGGTGACGTTTGTA
20968529 TAAAAACTCT
Statistics
Matches: 197, Mismatches: 44, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
134 85 0.43
135 51 0.26
136 61 0.31
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (134 bp):
CGTTTGTATCTGAAAATGCTTCTATATTAGTGGCATTTGTATCTTTGAGATGTCGCTAATTTAGT
AACATTTTTTTAAAAAAAATGCTGTTGCTTTGGTGACGTTTGTAACTGAAACCGTCACTACTTTA
GAGA
Found at i:20969241 original size:16 final size:16
Alignment explanation
Indices: 20969220--20969250 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
20969210 CTTCTCAATA
20969220 TTGAAGATGTAAATTG
1 TTGAAGATGTAAATTG
20969236 TTGAAGATGTAAATT
1 TTGAAGATGTAAATT
20969251 ACTGAGAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (16 bp):
TTGAAGATGTAAATTG
Found at i:20978472 original size:80 final size:79
Alignment explanation
Indices: 20978378--20978584 Score: 279
Period size: 80 Copynumber: 2.6 Consensus size: 79
20978368 TTTTTTGCTG
*
20978378 AATGGTATTGTATGATATTGGTAGGCTAAATCATATGCTGAATGGTTTGTTGAACCTTATTGTAT
1 AATGGTATTGTATGATATTGG-AGGCTAAATCATATGCTGAATGGTTTGTTGAACCTTATTATAT
20978443 GATATTGTATTACCA
65 GATATTGTATTACCA
* * * *
20978458 AATGGTATTGTATGATATTGGAGGGTTGAATCATATGTTGAATGGTTTGTTGAACCTTATTATCT
1 AATGGTATTGTATGATATTGGA-GGCTAAATCATATGCTGAATGGTTTGTTGAACCTTATTATAT
* * **
20978523 GATATTGTTTTGCTG
65 GATATTGTATTACCA
* * *
20978538 AATGATTTTGTATGATATTAGGGGGCTAAATCATATGCTGAATGGTT
1 AATGGTATTGTATGATATT-GGAGGCTAAATCATATGCTGAATGGTT
20978585 CTACTGAATG
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 107 0.97
81 2 0.02
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (79 bp):
AATGGTATTGTATGATATTGGAGGCTAAATCATATGCTGAATGGTTTGTTGAACCTTATTATATG
ATATTGTATTACCA
Found at i:20983517 original size:14 final size:15
Alignment explanation
Indices: 20983477--20983517 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
20983467 TCAAAAACTT
20983477 TTAAAATAGAATGTA
1 TTAAAATAGAATGTA
*
20983492 TT-AAATATGAAT-TC
1 TTAAAATA-GAATGTA
20983506 TTAAAATAGAAT
1 TTAAAATAGAAT
20983518 AATAATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (15 bp):
TTAAAATAGAATGTA
Found at i:20989919 original size:30 final size:30
Alignment explanation
Indices: 20989883--20989943 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
20989873 CGAAATTAAT
* * * *
20989883 AAAATATTATTTTTTAAATATAAATATTTA
1 AAAATATCATTATATAAATATAAATAATTA
*
20989913 AAAATATCATTATATAAATATATATAATTA
1 AAAATATCATTATATAAATATAAATAATTA
20989943 A
1 A
20989944 TTAATTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (30 bp):
AAAATATCATTATATAAATATAAATAATTA
Found at i:20996713 original size:43 final size:43
Alignment explanation
Indices: 20996665--20996750 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
20996655 GAGAAAAATT
*
20996665 TCATAAAACTCATTAC-CTAAAACTTAA-CTCAAAACTCAATTAC
1 TCATAAAACCCATTACTC-AAAACTTAATC-CAAAACTCAATTAC
*
20996708 TCATAAAACCCCTTACTCAAAACTTAATCCAAAACTCAATTAC
1 TCATAAAACCCATTACTCAAAACTTAATCCAAAACTCAATTAC
20996751 ACCATTTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 37 0.95
44 2 0.05
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (43 bp):
TCATAAAACCCATTACTCAAAACTTAATCCAAAACTCAATTAC
Found at i:21000520 original size:17 final size:18
Alignment explanation
Indices: 21000500--21000535 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
21000490 AAATAAAAAG
*
21000500 AAATAAG-AATAATGAAA
1 AAATAAGAAAAAATGAAA
21000517 AAATAAGAAAAAATGAAA
1 AAATAAGAAAAAATGAAA
21000535 A
1 A
21000536 GAAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (18 bp):
AAATAAGAAAAAATGAAA
Found at i:21000524 original size:24 final size:22
Alignment explanation
Indices: 21000485--21000557 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 22
21000475 AATGACGTGA
*
21000485 AAAAGAAATAAAAAGAAATAA-G
1 AAAAGAAA-AAAAAGAAAAAATG
21000507 AATAATGAAAAAATAAGAAAAAATG
1 AA-AA-GAAAAAA-AAGAAAAAATG
21000532 AAAAG--AAAAAAG-AAAAATG
1 AAAAGAAAAAAAAGAAAAAATG
21000551 AGAAAGA
1 A-AAAGA
21000558 TGTGAAAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
19 8 0.18
20 7 0.16
21 4 0.09
22 2 0.05
23 6 0.14
24 14 0.32
25 3 0.07
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (22 bp):
AAAAGAAAAAAAAGAAAAAATG
Found at i:21000546 original size:20 final size:19
Alignment explanation
Indices: 21000490--21000557 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
21000480 CGTGAAAAAG
*
21000490 AAATAAAAAGAAATAAGAA
1 AAATGAAAAGAAATAAGAA
*
21000509 TAATG-AAA-AAATAAGAAA
1 AAATGAAAAGAAATAAG-AA
*
21000527 AAATGAAAAGAAAAAAGAA
1 AAATGAAAAGAAATAAGAA
21000546 AAATGAGAAAGA
1 AAATGA-AAAGA
21000558 TGTGAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
17 7 0.17
18 9 0.22
19 14 0.34
20 11 0.27
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (19 bp):
AAATGAAAAGAAATAAGAA
Found at i:21000548 original size:29 final size:28
Alignment explanation
Indices: 21000515--21000585 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
21000505 AGAATAATGA
21000515 AAAAATAAGAAAAAATGAAAAGAAAAAAG
1 AAAAATAAGAAAAAATGAAAA-AAAAAAG
* ** *
21000544 AAAAATGAGAAAGATGTGAAAAAAAAGAG
1 AAAAATAAGAAA-AAATGAAAAAAAAAAG
*
21000573 AAAAA-AAGGAAAA
1 AAAAATAAGAAAAA
21000586 CTCAAATTGA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
27 1 0.03
28 4 0.12
29 22 0.65
30 7 0.21
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (28 bp):
AAAAATAAGAAAAAATGAAAAAAAAAAG
Found at i:21000566 original size:37 final size:36
Alignment explanation
Indices: 21000490--21000578 Score: 90
Period size: 37 Copynumber: 2.4 Consensus size: 36
21000480 CGTGAAAAAG
* *
21000490 AAATAAAAAGAAATAAGAATAATGAAAAAATAAGAAA
1 AAAT-AAAAGAAAAAAGAAAAATGAAAAAATAAGAAA
* **
21000527 AAATGAAAAGAAAAAAGAAAAATGAGAAAGATGTGAAA
1 AAAT-AAAAGAAAAAAGAAAAATGA-AAAAATAAGAAA
*
21000565 AAA-AAGAGAAAAAA
1 AAATAAAAGAAAAAA
21000579 AGGAAAACTC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 10 0.23
37 22 0.50
38 12 0.27
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (36 bp):
AAATAAAAGAAAAAAGAAAAATGAAAAAATAAGAAA
Found at i:21001362 original size:15 final size:15
Alignment explanation
Indices: 21001344--21001416 Score: 91
Period size: 15 Copynumber: 5.1 Consensus size: 15
21001334 ATAATTAGAG
21001344 TTGCATTCATAAACA
1 TTGCATTCATAAACA
*
21001359 TTGCATTCAT--GCA
1 TTGCATTCATAAACA
21001372 TTGCATTCATAAACA
1 TTGCATTCATAAACA
* *
21001387 TTGCTTTCAT--GCA
1 TTGCATTCATAAACA
21001400 TTGCATTCATAAACA
1 TTGCATTCATAAACA
21001415 TT
1 TT
21001417 ACACTCATGT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
13 23 0.48
15 25 0.52
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (15 bp):
TTGCATTCATAAACA
Found at i:21001375 original size:13 final size:13
Alignment explanation
Indices: 21001357--21001409 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
21001347 CATTCATAAA
21001357 CATTGCATTCATG
1 CATTGCATTCATG
*
21001370 CATTGCATTCATAAA
1 CATTGCATTCAT--G
*
21001385 CATTGCTTTCATG
1 CATTGCATTCATG
21001398 CATTGCATTCAT
1 CATTGCATTCAT
21001410 AAACATTACA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 23 0.68
15 11 0.32
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (13 bp):
CATTGCATTCATG
Found at i:21001376 original size:28 final size:28
Alignment explanation
Indices: 21001344--21001425 Score: 137
Period size: 28 Copynumber: 2.9 Consensus size: 28
21001334 ATAATTAGAG
21001344 TTGCATTCATAAACATTGCATTCATGCA
1 TTGCATTCATAAACATTGCATTCATGCA
*
21001372 TTGCATTCATAAACATTGCTTTCATGCA
1 TTGCATTCATAAACATTGCATTCATGCA
* *
21001400 TTGCATTCATAAACATTACACTCATG
1 TTGCATTCATAAACATTGCATTCATG
21001426 TAATTTGTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.37
Consensus pattern (28 bp):
TTGCATTCATAAACATTGCATTCATGCA
Found at i:21002143 original size:45 final size:45
Alignment explanation
Indices: 21001991--21002198 Score: 207
Period size: 45 Copynumber: 4.8 Consensus size: 45
21001981 ATGAGAATCT
* * *
21001991 CTTTTTATAT-TTTTC-AAAGTT-TTAAGTCTCTGTTGAGATGAG
1 CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTGTTGAGATGAA
* * * * * * * *
21002033 CCTTTTATATTTTTTCAAAAGTTATTAAGCCTTTGTTTAGAGGGAG
1 CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTGTTGAGA-TGAA
* *
21002079 C-TTTT-TATATTTTCAAAAGTTGTTGAGCCTCTATTGGGATGAA
1 CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTGTTGAGATGAA
21002122 CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTGTTGAGAT-AA
1 CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTGTTGAGATGAA
* * *
21002166 GTTTATAT-TTTTTTC-AAAGTTGTTGAGCCTCTG
1 CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTG
21002199 ATAAGATAAG
Statistics
Matches: 141, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.19
43 14 0.10
44 45 0.32
45 51 0.36
46 4 0.03
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.47
Consensus pattern (45 bp):
CTTTTTATATATTTTCAAAAGTTGTTGAGCCTCTGTTGAGATGAA
Found at i:21002143 original size:89 final size:87
Alignment explanation
Indices: 21001991--21002248 Score: 238
Period size: 89 Copynumber: 2.9 Consensus size: 87
21001981 ATGAGAATCT
* * * * * *
21001991 CTTTTTATATTTTTCAAAGTT-TTAAGTCTCTGTTGAGATGAGCCTTTTATATTTTTTCAAAAGT
1 CTTTTTATA-TTTTCAAAGTTGTTGAGCCTCTATTGAGATGAACTTTTTATATATTTTCAAAAGT
* *
21002055 TATTAAGCCTTTGTTTAGAGGGAG
65 TATTAAGCCTTTGTTGAGA-GAAG
*
21002079 CTTTTTATATTTTCAAAAGTTGTTGAGCCTCTATTGGGATGAACTTTTTATATATTTTCAAAAGT
1 CTTTTTATATTTTC-AAAGTTGTTGAGCCTCTATTGAGATGAACTTTTTATATATTTTCAAAAGT
* * * *
21002144 TGTTGAGCCTCTGTTGAGATAAG
65 TATTAAGCCTTTGTTGAGAGAAG
* * *
21002167 -TTTATATTTTTTTCAAAGTTGTTGAGCCTCTGA-TAAGAT-AAGTCTTTTTTTATATATTTTTC
1 CTTTTTA-TATTTTCAAAGTTGTTGAGCCTCT-ATTGAGATGAA--C--TTTTTATATA-TTTTC
*
21002229 -AAAGTTATTAGGCCTTTGTT
59 AAAAGTTATTAAGCCTTTGTT
21002249 CACAGGGTTT
Statistics
Matches: 140, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
86 2 0.01
87 31 0.22
88 25 0.18
89 51 0.36
90 26 0.19
91 5 0.04
ACGTcount: A:0.25, C:0.10, G:0.16, T:0.48
Consensus pattern (87 bp):
CTTTTTATATTTTCAAAGTTGTTGAGCCTCTATTGAGATGAACTTTTTATATATTTTCAAAAGTT
ATTAAGCCTTTGTTGAGAGAAG
Found at i:21002372 original size:21 final size:22
Alignment explanation
Indices: 21002337--21002385 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
21002327 ATTTTTTTGA
*
21002337 ATGTGAACCT-TTAAATTTTAG
1 ATGTGAACCTCTAAAATTTTAG
* *
21002358 ATGTGAATCTCTAAAATTTTCG
1 ATGTGAACCTCTAAAATTTTAG
21002380 A-GTGAA
1 ATGTGAA
21002386 AACCTTAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGTGAACCTCTAAAATTTTAG
Found at i:21002374 original size:22 final size:22
Alignment explanation
Indices: 21002349--21002478 Score: 63
Period size: 22 Copynumber: 5.9 Consensus size: 22
21002339 GTGAACCTTT
21002349 AAATTTTAGATGTGAATCTCTA
1 AAATTTTAGATGTGAATCTCTA
* *
21002371 AAATTTTCGA-GTGAAAAC-CT-
1 AAATTTTAGATGTG-AATCTCTA
* * * * *
21002391 TAATCTTGGATTTGAATCTTTA
1 AAATTTTAGATGTGAATCTCTA
* *
21002413 AGAGTTTTA-AT-TACGAATCTTTA
1 A-AATTTTAGATGT--GAATCTCTA
* *
21002436 AAATTTTAGGTGTAAATCTCTA
1 AAATTTTAGATGTGAATCTCTA
*
21002458 AAACTTTTCATATGTGAATCT
1 AAA-TTTT-AGATGTGAATCT
21002479 TTCAATATCG
Statistics
Matches: 78, Mismatches: 19, Indels: 20
0.67 0.16 0.17
Matches are distributed among these distances:
20 10 0.13
21 9 0.12
22 30 0.38
23 19 0.24
24 10 0.13
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (22 bp):
AAATTTTAGATGTGAATCTCTA
Found at i:21002515 original size:19 final size:19
Alignment explanation
Indices: 21002493--21002572 Score: 92
Period size: 19 Copynumber: 4.3 Consensus size: 19
21002483 ATATCGTGCA
21002493 AATCTTTAAATCACTTGCG
1 AATCTTTAAATCACTTGCG
** *
21002512 AATCTTTAAATCTTTTGTG
1 AATCTTTAAATCACTTGCG
*
21002531 AATCTTTGAATCACTTGC-
1 AATCTTTAAATCACTTGCG
*
21002549 AAGTC-TTAAATCACTTGCA
1 AA-TCTTTAAATCACTTGCG
21002568 AATCT
1 AATCT
21002573 AAAATTTCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
18 16 0.32
19 34 0.68
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (19 bp):
AATCTTTAAATCACTTGCG
Found at i:21002577 original size:18 final size:18
Alignment explanation
Indices: 21002539--21002577 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
21002529 TGAATCTTTG
* *
21002539 AATCACTTGCAAGTCTTA
1 AATCACTTGCAAATCTAA
21002557 AATCACTTGCAAATCTAA
1 AATCACTTGCAAATCTAA
21002575 AAT
1 AAT
21002578 TTCTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (18 bp):
AATCACTTGCAAATCTAA
Found at i:21002584 original size:57 final size:57
Alignment explanation
Indices: 21002470--21002577 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
21002460 ACTTTTCATA
* *
21002470 TGTGAATCTTTCAATATCGTGCAAATCTTTAAATCACTTGCGAATCTTTAAATCTTT
1 TGTGAATCTTTCAATATCGTGCAAATCTTTAAATCACTTGCAAATCTTAAAATCTTT
* * *
21002527 TGTGAATCTTTGAATCA-CTTGCAAGTC-TTAAATCACTTGCAAATC-TAAAAT
1 TGTGAATCTTTCAAT-ATCGTGCAAATCTTTAAATCACTTGCAAATCTTAAAAT
21002578 TTCTTTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
55 5 0.11
56 17 0.38
57 22 0.49
58 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (57 bp):
TGTGAATCTTTCAATATCGTGCAAATCTTTAAATCACTTGCAAATCTTAAAATCTTT
Found at i:21002615 original size:18 final size:19
Alignment explanation
Indices: 21002592--21002892 Score: 189
Period size: 19 Copynumber: 16.3 Consensus size: 19
21002582 TTTAAATCTG
21002592 GAATCTTTTACGAAT-TTT
1 GAATCTTTTACGAATCTTT
* *
21002610 GAATCTTTTATGTATCTTT
1 GAATCTTTTACGAATCTTT
21002629 GAATCTCTTGTA--AATCTTT
1 GAATCT-TT-TACGAATCTTT
* ** *
21002648 AAATC-ACTA-GTAATTTTTT
1 GAATCTTTTACG-AA-TCTTT
** * *
21002667 GAATCACTTACAAATTTTT
1 GAATCTTTTACGAATCTTT
** * *
21002686 GAATCACTTGCAAATCTTT
1 GAATCTTTTACGAATCTTT
21002705 GAAT-TTTTACGAATC-TT
1 GAATCTTTTACGAATCTTT
**
21002722 GAATCTTTTGTGAATCTTT
1 GAATCTTTTACGAATCTTT
* *
21002741 AAATCTTTTATGAATCTTT
1 GAATCTTTTACGAATCTTT
*
21002760 AAATCTTTTACGAATCTTT
1 GAATCTTTTACGAATCTTT
21002779 GAAT-TTTTACGAATCTTT
1 GAATCTTTTACGAATCTTT
* *
21002797 GAATC-TTTGCAAATC-TT
1 GAATCTTTTACGAATCTTT
* ** *
21002814 GAATATTTTGTGAAGC-TT
1 GAATCTTTTACGAATCTTT
*
21002832 GAATCTCTTGA-GAATCTTT
1 GAATCT-TTTACGAATCTTT
*
21002851 GAAT-TCTTTACAAATC-TT
1 GAATCT-TTTACGAATCTTT
*
21002869 GAATCTTTTACGAACCTTT
1 GAATCTTTTACGAATCTTT
*
21002888 AAATC
1 GAATC
21002893 GTTATAAATC
Statistics
Matches: 228, Mismatches: 38, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
16 2 0.01
17 12 0.05
18 94 0.41
19 112 0.49
20 6 0.03
21 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (19 bp):
GAATCTTTTACGAATCTTT
Found at i:21002756 original size:11 final size:11
Alignment explanation
Indices: 21002721--21002778 Score: 56
Period size: 11 Copynumber: 5.8 Consensus size: 11
21002711 TTACGAATCT
*
21002721 TGAATCTTTTG
1 TGAATCTTTTA
21002732 TGAATC-TTTA
1 TGAATCTTTTA
21002742 --AATCTTTTA
1 TGAATCTTTTA
21002751 TGAATC-TTTA
1 TGAATCTTTTA
21002761 --AATCTTTTA
1 TGAATCTTTTA
*
21002770 CGAATCTTT
1 TGAATCTTT
21002779 GAATTTTTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
8 8 0.20
9 8 0.20
10 7 0.17
11 17 0.43
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.52
Consensus pattern (11 bp):
TGAATCTTTTA
Found at i:21002787 original size:37 final size:36
Alignment explanation
Indices: 21002698--21002887 Score: 188
Period size: 37 Copynumber: 5.2 Consensus size: 36
21002688 ATCACTTGCA
**
21002698 AATCTTTGAATTTTTACGAATCTTGAATCTTTTGTG
1 AATCTTTGAATTTTTACGAATCTTGAATCTTTTACG
* * *
21002734 AATCTTTAAATCTTTTATGAATCTTTAAATCTTTTACG
1 AATCTTTGAAT-TTTTACGAATC-TTGAATCTTTTACG
* *
21002772 AATCTTTGAATTTTTACGAATCTTTGAATC-TTTGCA
1 AATCTTTGAATTTTTACGAATC-TTGAATCTTTTACG
** * *
21002808 AATC-TTGAATATTTTGTGAAGCTTGAATCTCTTGA-G
1 AATCTTTGAAT-TTTTACGAATCTTGAATCT-TTTACG
*
21002844 AATCTTTGAATTCTTTACAAATCTTGAATCTTTTACG
1 AATCTTTGAATT-TTTACGAATCTTGAATCTTTTACG
*
21002881 AACCTTT
1 AATCTTT
21002888 AAATCGTTAT
Statistics
Matches: 124, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
35 13 0.10
36 34 0.27
37 56 0.45
38 21 0.17
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47
Consensus pattern (36 bp):
AATCTTTGAATTTTTACGAATCTTGAATCTTTTACG
Found at i:21002813 original size:10 final size:8
Alignment explanation
Indices: 21002698--21002805 Score: 56
Period size: 8 Copynumber: 12.0 Consensus size: 8
21002688 ATCACTTGCA
21002698 AATCTTTG
1 AATCTTTG
*
21002706 AATTTTTACG
1 AATCTTT--G
21002716 AATC-TTG
1 AATCTTTG
21002723 AATCTTTTGTG
1 AATC--TT-TG
*
21002734 AATCTTTA
1 AATCTTTG
21002742 AATCTTTTATG
1 AATC--TT-TG
*
21002753 AATCTTTA
1 AATCTTTG
21002761 AATCTTTTACG
1 AATC-TTT--G
21002772 AATCTTTG
1 AATCTTTG
*
21002780 AATTTTTACG
1 AATCTTT--G
21002790 AATCTTTG
1 AATCTTTG
21002798 AATCTTTG
1 AATCTTTG
21002806 CAAATCTTGA
Statistics
Matches: 78, Mismatches: 8, Indels: 28
0.68 0.07 0.25
Matches are distributed among these distances:
7 5 0.06
8 32 0.41
9 9 0.12
10 17 0.22
11 15 0.19
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (8 bp):
AATCTTTG
Found at i:21003067 original size:22 final size:22
Alignment explanation
Indices: 21003000--21003087 Score: 60
Period size: 22 Copynumber: 4.1 Consensus size: 22
21002990 AGCCTTAAAA
21003000 TTCAAATTGAGAAT-CTTTGAAT
1 TTCAAATTGAGAATGC-TTGAAT
* *
21003022 TT--AATT-ATGAACT-TTTGAAC
1 TTCAAATTGA-GAA-TGCTTGAAT
*
21003042 TTCAAGTTGAGAATGCTTGAAT
1 TTCAAATTGAGAATGCTTGAAT
* * *
21003064 TTCAAATTGGGAATGTTTAAAT
1 TTCAAATTGAGAATGCTTGAAT
21003086 TT
1 TT
21003088 TCAGTTGTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
19 1 0.02
20 14 0.27
21 2 0.04
22 33 0.65
23 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (22 bp):
TTCAAATTGAGAATGCTTGAAT
Found at i:21003333 original size:18 final size:18
Alignment explanation
Indices: 21003292--21003334 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
21003282 CTTTGAATTT
* *
21003292 TTTTATTTATTTTTGATA
1 TTTTATTTAGTTTAGATA
21003310 TTTTATTTAGTTTAGA-A
1 TTTTATTTAGTTTAGATA
21003327 TTATTATT
1 TT-TTATT
21003335 ATTATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (18 bp):
TTTTATTTAGTTTAGATA
Found at i:21004560 original size:18 final size:18
Alignment explanation
Indices: 21004537--21004577 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
21004527 AAACCTTATG
*
21004537 ATTTTTA-AATAAAAATTA
1 ATTTTTAGAA-AAAAAATA
21004555 ATTTTTAGAAAAAAAATA
1 ATTTTTAGAAAAAAAATA
21004573 ATTTT
1 ATTTT
21004578 CATAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTTTTAGAAAAAAAATA
Found at i:21004570 original size:118 final size:121
Alignment explanation
Indices: 21004342--21004599 Score: 319
Period size: 118 Copynumber: 2.2 Consensus size: 121
21004332 AATAAAACAA
*
21004342 AAAGCCTTACCAACATATTGGAAGGCAATTTGATTTTTTAAAATAAAGTTTTACCAACATATTAG
1 AAAGCCTTACCAACATATTGGAAGGCAATTTGAATTTTTAAAATAAAGTTTTACCAACATATTAG
** * * *
21004407 AGAACCATATTAATTTTTTTATTAAAATAAATTTCAAGAGAAAAAATAGTTTTCAAT
66 AGAACCATATTAATTTTTAAATAAAAATAAATTTCAAGAAAAAAAATAATTTTC-AT
* * *
21004464 AAAGCCTTACCAACATATT-GAAGGCAATTT-AATTTTTAAGATAAGGTTTTACCAATATATT-G
1 AAAGCCTTACCAACATATTGGAAGGCAATTTGAATTTTTAAAATAAAGTTTTACCAACATATTAG
* * * **
21004526 TA-AACCTTA-TGATTTTTAAATAAAAATTAATTTTTAGAAAAAAAATAATTTTCAT
66 -AGAACCATATTAATTTTTAAATAAAAATAAATTTCAAGAAAAAAAATAATTTTCAT
**
21004581 AAAATCTTACCAACATATT
1 AAAGCCTTACCAACATATT
21004600 TGAGGATAAT
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
117 19 0.16
118 35 0.29
119 7 0.06
120 28 0.24
121 11 0.09
122 19 0.16
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.37
Consensus pattern (121 bp):
AAAGCCTTACCAACATATTGGAAGGCAATTTGAATTTTTAAAATAAAGTTTTACCAACATATTAG
AGAACCATATTAATTTTTAAATAAAAATAAATTTCAAGAAAAAAAATAATTTTCAT
Found at i:21004584 original size:18 final size:19
Alignment explanation
Indices: 21004542--21004584 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
21004532 TTATGATTTT
*
21004542 TAAATAAAAATTAATTTTTA
1 TAAA-AAAAATTAATTTTCA
*
21004562 GAAAAAAAA-TAATTTTCA
1 TAAAAAAAATTAATTTTCA
21004580 TAAAA
1 TAAAA
21004585 TCTTACCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 12 0.60
19 5 0.25
20 3 0.15
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAAAAAAATTAATTTTCA
Found at i:21006531 original size:22 final size:23
Alignment explanation
Indices: 21006476--21006532 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
21006466 GAAAAGAAGC
21006476 TTTTTATTT-TTTTGTGTTGGTT
1 TTTTTATTTCTTTTGTGTTGGTT
*
21006498 TTTTT-TTGCTTTTGT-TT-GTT
1 TTTTTATTTCTTTTGTGTTGGTT
21006518 TTTTTACTTTCTTTT
1 TTTTTA-TTTCTTTT
21006533 CAGCATTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 8 0.27
21 4 0.13
22 18 0.60
ACGTcount: A:0.04, C:0.05, G:0.12, T:0.79
Consensus pattern (23 bp):
TTTTTATTTCTTTTGTGTTGGTT
Found at i:21007515 original size:18 final size:17
Alignment explanation
Indices: 21007477--21007520 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
21007467 ATCGGATTAA
21007477 GTTTTTTTTTTATGGATT
1 GTTTTTTTTTTATGGA-T
21007495 GTTTTTTTTTTAATTGG-T
1 GTTTTTTTTTT-A-TGGAT
21007513 GTTTTTTT
1 GTTTTTTT
21007521 GTATGGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 20 0.83
19 1 0.04
20 3 0.12
ACGTcount: A:0.09, C:0.00, G:0.16, T:0.75
Consensus pattern (17 bp):
GTTTTTTTTTTATGGAT
Found at i:21011107 original size:22 final size:23
Alignment explanation
Indices: 21011076--21011129 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
21011066 TGAAATTAAA
* *
21011076 ATTTTAATATCTTATTAAT-AATT
1 ATTTTTATAT-TTATCAATAAATT
21011099 -TTTTTATA-TTATCAATAAATT
1 ATTTTTATATTTATCAATAAATT
21011120 ATTTTTATAT
1 ATTTTTATAT
21011130 AAAATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 7 0.27
21 4 0.15
22 15 0.58
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (23 bp):
ATTTTTATATTTATCAATAAATT
Found at i:21011110 original size:20 final size:22
Alignment explanation
Indices: 21011087--21011129 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
21011077 TTTTAATATC
*
21011087 TTATTAAT-AATT-TTTTTATA
1 TTATCAATAAATTATTTTTATA
21011107 TTATCAATAAATTATTTTTATA
1 TTATCAATAAATTATTTTTATA
21011129 T
1 T
21011130 AAAATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 4 0.20
22 9 0.45
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATCAATAAATTATTTTTATA
Found at i:21011147 original size:15 final size:15
Alignment explanation
Indices: 21011129--21011163 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
21011119 TATTTTTATA
21011129 TAAAATTATTAAAAT
1 TAAAATTATTAAAAT
*
21011144 TAAAATTATTATAAT
1 TAAAATTATTAAAAT
21011159 TAAAA
1 TAAAA
21011164 GTTTAACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAAATTATTAAAAT
Done.