Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168397.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21510
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:10405 original size:19 final size:19

Alignment explanation


    Indices: 10381--10420  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

      10371 TAGTGTTTGG

                               
      10381 TTAATATGTTTGTTTCTAA
          1 TTAATATGTTTGTTTCTAA

                       *       
      10400 TTAATATGTTTTTTTCTAA
          1 TTAATATGTTTGTTTCTAA

              
      10419 TT
          1 TT

      10421 CTTTCATTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62


Consensus pattern (19 bp):   
TTAATATGTTTGTTTCTAA

Found at i:11090 original size:20 final size:20

Alignment explanation


    Indices: 11067--11115  Score: 89
    Period size: 20  Copynumber: 2.5  Consensus size: 20

      11057 AAACCCTAAG

                                
      11067 CCTTAAACCCCAAACACAAA
          1 CCTTAAACCCCAAACACAAA

                          *     
      11087 CCTTAAACCCCAAATACAAA
          1 CCTTAAACCCCAAACACAAA

                     
      11107 CCTTAAACC
          1 CCTTAAACC

      11116 TAAACCTGGA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  20   28  1.00

ACGTcount: A:0.47, C:0.39, G:0.00, T:0.14


Consensus pattern (20 bp):   
CCTTAAACCCCAAACACAAA

Found at i:14376 original size:191 final size:191

Alignment explanation


    Indices: 14047--14414  Score: 610
    Period size: 191  Copynumber: 1.9  Consensus size: 191

      14037 ATGATGCTAG

                                         *                                *  
      14047 CATTGATCATGATCTATAAACATAAGATTGGTTAATTAGAAAATTAGTGATGAAGTCAAGAAGTT
          1 CATTGATCATGATCTATAAACATAAGATTAGTTAATTAGAAAATTAGTGATGAAGTCAAGAACTT

                                           *       *              *        * 
      14112 TGTTTCATCTATAGCCAAATACTAGGGCTCATAATGTTTGTACCTAATGGGTCATACACAATAGG
         66 TGTTTCATCTATAGCCAAATACTAGGGCTCACAATGTTTCTACCTAATGGGTCACACACAATACG

                            *      *             * *                     
      14177 ACAATTGTGAAAGATTGAAATTGGGGCAAATTAAGTTGGGCTTAATTAGTGATGAAGGTAA
        131 ACAATTGTGAAAGATTAAAATTGAGGCAAATTAAGTTAGACTTAATTAGTGATGAAGGTAA

                                *            *      *                        
      14238 CATTGATCATGATCTATAAATATAAGATTAGTTCATTAGAGAATTAGTGATGAAGTCAAGAACTT
          1 CATTGATCATGATCTATAAACATAAGATTAGTTAATTAGAAAATTAGTGATGAAGTCAAGAACTT

                                                                             
      14303 TGTTTCATCTATAGCCAAATACTAGGGCTCACAATGTTTCTACCTAATGGGTCACACACAATACG
         66 TGTTTCATCTATAGCCAAATACTAGGGCTCACAATGTTTCTACCTAATGGGTCACACACAATACG

             *                                             
      14368 ATAATTGTGAAAGATTAAAATTGAGGCAAATTAAGTTAGACTTAATT
        131 ACAATTGTGAAAGATTAAAATTGAGGCAAATTAAGTTAGACTTAATT

      14415 TGTTTTTGGT


Statistics
Matches: 163,  Mismatches: 14, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
 191  163  1.00

ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32


Consensus pattern (191 bp):   
CATTGATCATGATCTATAAACATAAGATTAGTTAATTAGAAAATTAGTGATGAAGTCAAGAACTT
TGTTTCATCTATAGCCAAATACTAGGGCTCACAATGTTTCTACCTAATGGGTCACACACAATACG
ACAATTGTGAAAGATTAAAATTGAGGCAAATTAAGTTAGACTTAATTAGTGATGAAGGTAA

Found at i:18875 original size:26 final size:25

Alignment explanation


    Indices: 18842--18896  Score: 67
    Period size: 26  Copynumber: 2.2  Consensus size: 25

      18832 TATCATTTTA

                               * *    
      18842 TTTAATTA-TAATATATATTTTTATT
          1 TTTAATTATTAATA-ATATCTGTATT

                                      
      18867 TTTATATTATTAATAATATCTGTATT
          1 TTTA-ATTATTAATAATATCTGTATT

                
      18893 TTTA
          1 TTTA

      18897 CAAATCTAAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  25    4  0.15
  26   17  0.65
  27    5  0.19

ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62


Consensus pattern (25 bp):   
TTTAATTATTAATAATATCTGTATT

Found at i:19811 original size:29 final size:29

Alignment explanation


    Indices: 19753--19811  Score: 66
    Period size: 29  Copynumber: 2.0  Consensus size: 29

      19743 AATTATAGCG

                              *      *   
      19753 AAATGTTCAATGTGGTACCTAAAATTTAA
          1 AAATGTTCAATGTGGTACATAAAATATAA

                                 *  *     
      19782 AAAT-TTCAAATGTGGTACATGAACTATAA
          1 AAATGTTC-AATGTGGTACATAAAATATAA

             
      19811 A
          1 A

      19812 TCTGTTAACT


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  28    3  0.12
  29   22  0.88

ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32


Consensus pattern (29 bp):   
AAATGTTCAATGTGGTACATAAAATATAA

Found at i:20220 original size:3 final size:3

Alignment explanation


    Indices: 20212--20255  Score: 88
    Period size: 3  Copynumber: 14.7  Consensus size: 3

      20202 CTGAAATTTC

                                                                      
      20212 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

      20256 GGGTAAATTA


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Done.