Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168399.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21481
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:5585 original size:11 final size:11
Alignment explanation
Indices: 5551--5578 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
5541 TTTCTCTAAA
5551 TTTTTTGTAAT
1 TTTTTTGTAAT
5562 TTTTTTGTAAT
1 TTTTTTGTAAT
5573 TTTTTT
1 TTTTTT
5579 TTCATTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTGTAAT
Found at i:6373 original size:30 final size:30
Alignment explanation
Indices: 6339--6406 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
6329 CTATTTCAAA
* *
6339 TCAATTAAACCTTTACATATATTTTTTCAC
1 TCAATTAAACCTTTACACATATGTTTTCAC
* * * *
6369 TCAATTAAACTTTTATACATCTGTTTTCAT
1 TCAATTAAACCTTTACACATATGTTTTCAC
6399 TCAATTAA
1 TCAATTAA
6407 GCTCTTTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.18, G:0.01, T:0.47
Consensus pattern (30 bp):
TCAATTAAACCTTTACACATATGTTTTCAC
Found at i:8371 original size:25 final size:23
Alignment explanation
Indices: 8324--8438 Score: 66
Period size: 20 Copynumber: 5.2 Consensus size: 23
8314 TTTTCTTTCT
**
8324 TTTATATTTTATGTATTTTTATA
1 TTTATATTTTATGTATTAATATA
8347 TTTATTATTATTATGTATTAATATA
1 TTTA-TATT-TTATGTATTAATATA
* * *
8372 TGTATA---TATGTATTTATTTA
1 TTTATATTTTATGTATTAATATA
* * *
8392 TTT-T-TTTTATTTA-GAATAGA
1 TTTATATTTTATGTATTAATATA
*
8412 TTTATA-TTTATATAGTT-ATATA
1 TTTATATTTTATGTA-TTAATATA
8434 TTTAT
1 TTTAT
8439 TATTATATTA
Statistics
Matches: 69, Mismatches: 14, Indels: 19
0.68 0.14 0.19
Matches are distributed among these distances:
19 1 0.01
20 20 0.29
21 13 0.19
22 9 0.13
23 4 0.06
24 6 0.09
25 16 0.23
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (23 bp):
TTTATATTTTATGTATTAATATA
Found at i:8447 original size:28 final size:26
Alignment explanation
Indices: 8413--8474 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
8403 TAGAATAGAT
8413 TTATATTTATATAGTTATATATTTATTA
1 TTATATTTATA-AGTTATATA-TTATTA
* *
8441 TTATA-TTATAATTTATGTATTATTA
1 TTATATTTATAAGTTATATATTATTA
8466 TTATTATTT
1 TTA-TATTT
8475 TTTTTTCTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 9 0.30
26 9 0.30
27 7 0.23
28 5 0.17
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (26 bp):
TTATATTTATAAGTTATATATTATTA
Found at i:8961 original size:31 final size:31
Alignment explanation
Indices: 8894--8966 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
8884 AATTTCCAGA
* * *
8894 TTCCGACGAAAATTCCGGCGACTTTTGAATT
1 TTCCGGCGACAATTCCGGCGACTTTTGAAGT
8925 TTCCGGCGACAATTCCGGCGAAC-TTTGAAGT
1 TTCCGGCGACAATTCCGGCG-ACTTTTGAAGT
8956 TTCCGGCGACA
1 TTCCGGCGACA
8967 GACCCAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 36 0.95
32 2 0.05
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (31 bp):
TTCCGGCGACAATTCCGGCGACTTTTGAAGT
Found at i:9055 original size:19 final size:20
Alignment explanation
Indices: 9026--9065 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
9016 CTTCCGGCCA
9026 ATTTCCGGTGAAATTCCCAG
1 ATTTCCGGTGAAATTCCCAG
*
9046 ATTT-CGGTGAAATTTCCAG
1 ATTTCCGGTGAAATTCCCAG
9065 A
1 A
9066 ATCCGGCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (20 bp):
ATTTCCGGTGAAATTCCCAG
Found at i:9300 original size:5 final size:5
Alignment explanation
Indices: 9290--9332 Score: 68
Period size: 5 Copynumber: 8.6 Consensus size: 5
9280 TTCAGCCCCT
* *
9290 CCGAG CCGAG CCGAG CCGAG CCGAG CCGAA CCAAG CCGAG CCG
1 CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCG
9333 CGATCCGAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.23, C:0.42, G:0.35, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:9586 original size:161 final size:153
Alignment explanation
Indices: 9420--10026 Score: 984
Period size: 152 Copynumber: 3.9 Consensus size: 153
9410 TTTTTTCTTT
* *
9420 TTTTTTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATAC
1 TTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATAC
9485 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
65 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
* * *
9550 TGATAATTAATTACTTGGCTGATTTTGA
130 ---CAA-TAATTAATTGGATGATTTTGA
*
9578 TTTTTTTTTCTTTAATTAATCCGACGATGGAGCCTCTGCAAGTGAAACAGTAGTTTTTTCTTGCA
1 ---TTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAG-TTTTTCTTGCA
* *
9643 TACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAAT
62 TACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAAT
9708 TTCCAATAATTAATTGGATGATTTTGA
127 TTCCAATAATTAATTGGATGATTTTGA
9735 -TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
1 TTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
* *
9799 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAATTTCC
66 CCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
9864 AATAATTAATTGGATGATTTTG-
131 AATAATTAATTGGATGATTTTGA
* *
9886 TTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
1 TTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
*
9951 CCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATCATTTCC
66 CCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
* *
10016 AACAACTAATT
131 AATAATTAATT
10027 ACTTGGTAAA
Statistics
Matches: 428, Mismatches: 16, Indels: 13
0.94 0.04 0.03
Matches are distributed among these distances:
152 235 0.55
153 48 0.11
157 19 0.04
158 2 0.00
160 9 0.02
161 115 0.27
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (153 bp):
TTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
CCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
AATAATTAATTGGATGATTTTGA
Found at i:13696 original size:8 final size:8
Alignment explanation
Indices: 13683--13729 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
13673 GATGATGGAA
13683 AAAAAAAG
1 AAAAAAAG
13691 AAAAAAAG
1 AAAAAAAG
13699 -AAAAAAG
1 AAAAAAAG
*
13706 AAAGAAATG
1 AAA-AAAAG
* *
13715 AGAAAATG
1 AAAAAAAG
13723 AAAAAAA
1 AAAAAAA
13730 AGAGATTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 7 0.21
8 20 0.61
9 6 0.18
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:15230 original size:43 final size:42
Alignment explanation
Indices: 14956--15578 Score: 946
Period size: 42 Copynumber: 15.0 Consensus size: 42
14946 GTCAAGGAGT
* *
14956 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
* *
14997 ATTTA-ATTTCCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAG-TCGTGGTGCCTCTGTTGAGAGGAGCA
*
15037 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
* *
15078 ATTTATCTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
15120 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
*
15162 ATTTATCTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
15204 ATTTATTTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTA-TTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
15247 ATTTATTTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTA-TTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
15290 ATTTATTTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTA-TTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
*
15333 ATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
* *
15375 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
* *
15417 ATTTA-CTTTCCAAAGTCCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGT-CGTGGTGCCTCTGTTGAGAGGAGCA
*
15457 ATTTA-CTTTCCAAAGTCCGT--TGCCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGT-CGTGGTGCCTCTGTTGAGAGGAGCA
*
15497 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
* * *
15538 ATTTATCTTTCCAAAGTCGTGTTGCCTCTGTTTAGAGGAGC
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGC
15579 TTCGGCAAAA
Statistics
Matches: 547, Mismatches: 23, Indels: 23
0.92 0.04 0.04
Matches are distributed among these distances:
39 7 0.01
40 101 0.18
41 81 0.15
42 231 0.42
43 127 0.23
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (42 bp):
ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
Found at i:15606 original size:12 final size:12
Alignment explanation
Indices: 15585--15647 Score: 94
Period size: 12 Copynumber: 5.2 Consensus size: 12
15575 GAGCTTCGGC
15585 AAAA-AAAAAAA
1 AAAACAAAAAAA
15596 AAAACAAAAAAA
1 AAAACAAAAAAA
15608 AAAACAAAAAAA
1 AAAACAAAAAAA
15620 AAAACAAAAAAA
1 AAAACAAAAAAA
15632 ACAAA-AAAAACAA
1 A-AAACAAAAA-AA
15645 AAA
1 AAA
15648 TTTTTAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.08
12 39 0.80
13 6 0.12
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAA
Found at i:15663 original size:1 final size:1
Alignment explanation
Indices: 15585--15647 Score: 81
Period size: 1 Copynumber: 63.0 Consensus size: 1
15575 GAGCTTCGGC
* * * * *
15585 AAAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAACAAAAAAAACAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15648 TTTTTAAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:16000 original size:3 final size:3
Alignment explanation
Indices: 15987--16020 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
15977 TGGGTTTATC
15987 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
16021 TTTAATTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:16515 original size:31 final size:31
Alignment explanation
Indices: 16444--16516 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
16434 AATTTCCAGA
* *
16444 TTCCGGCGAAAATTCCGGCGACTTTTGAATT
1 TTCCGGCGACAATTCCGGCGACTTTTGAAGT
*
16475 TTTCGGCGACAATTCCGGCGAAC-TTTGAAGT
1 TTCCGGCGACAATTCCGGCG-ACTTTTGAAGT
16506 TTCCGGCGACA
1 TTCCGGCGACA
16517 GACCCAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 35 0.95
32 2 0.05
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (31 bp):
TTCCGGCGACAATTCCGGCGACTTTTGAAGT
Found at i:16833 original size:5 final size:5
Alignment explanation
Indices: 16823--16875 Score: 88
Period size: 5 Copynumber: 10.6 Consensus size: 5
16813 TTCAGCCCCT
* *
16823 CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAA CCAAG CCGAG
1 CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG
16873 CCG
1 CCG
16876 CGATCCGAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.23, C:0.42, G:0.36, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:16929 original size:1 final size:1
Alignment explanation
Indices: 16895--16919 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
16885 CCGCTCCAGG
16895 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
16920 GAATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:17228 original size:160 final size:154
Alignment explanation
Indices: 16965--17422 Score: 731
Period size: 160 Copynumber: 2.9 Consensus size: 154
16955 TTTTTTTTTC
* *
16965 TTTTTCTTTAATTAATCCGACGACGGAGACTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
17030 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC-
* *
17095 ATAATTAATTACTTGGCTGATTTTGATTT
130 ACAA-TAATTACTTGGATGATTTTG---T
17124 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTTCTTGCATACT
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAG-TTTTTCTTGCATACT
*
17189 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAA-TTTC
65 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
*
17253 -CAATAATTAATTGGATGATTTTGT
130 ACAATAATTACTTGGATGATTTTGT
* *
17277 TTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
* * *
17342 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATCATTTCCA
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC-
17407 ACAACTAATTACTTGG
130 ACAA-TAATTACTTGG
17423 TAAAATTTTA
Statistics
Matches: 281, Mismatches: 13, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
152 72 0.26
153 51 0.18
155 3 0.01
156 28 0.10
157 2 0.01
159 51 0.18
160 74 0.26
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (154 bp):
TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
CAATAATTACTTGGATGATTTTGT
Found at i:17395 original size:152 final size:153
Alignment explanation
Indices: 16965--17416 Score: 726
Period size: 152 Copynumber: 2.9 Consensus size: 153
16955 TTTTTTTTTC
* *
16965 TTTTTCTTTAATTAATCCGACGACGGAGACTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
17030 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA-TTTC-
* * *
17095 ATAATTAATTACTTGGCTGATTTTGATTT
129 -CAA-TAATTAATTGGATGATTTTG--TT
17124 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTTCTTGCATACT
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAG-TTTTTCTTGCATACT
*
17189 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAATTTCC
65 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
17254 AATAATTAATTGGATGATTTTG-T
130 AATAATTAATTGGATGATTTTGTT
* *
17277 TTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
* *
17342 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATCATTTCCA
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
* *
17407 ACAACTAATT
131 ATAATTAATT
17417 ACTTGGTAAA
Statistics
Matches: 279, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
152 86 0.31
153 48 0.17
156 18 0.06
157 2 0.01
159 51 0.18
160 74 0.27
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (153 bp):
TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
ATAATTAATTGGATGATTTTGTT
Done.