Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168404.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_62, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141830
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
File 3 of 5
Found at i:70491 original size:30 final size:30
Alignment explanation
Indices: 70455--70518 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
70445 TAATATTCAA
*
70455 ATTATATTA-AATATTA-ATATATAATAATTT
1 ATTATATTATAAT-TTATAAATA-AATAATTT
*
70485 ATTATATTATAATTTATAAATAAATACTTT
1 ATTATATTATAATTTATAAATAAATAATTT
70515 ATTA
1 ATTA
70519 ATAATAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 23 0.77
31 7 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (30 bp):
ATTATATTATAATTTATAAATAAATAATTT
Found at i:71645 original size:135 final size:135
Alignment explanation
Indices: 71374--71645 Score: 280
Period size: 135 Copynumber: 2.0 Consensus size: 135
71364 TTTGAATTGG
* * * *
71374 TTCGGTAAACAAATTTATTTTTTAAATCTATCAGTTATTAAATTTCATAATATTACTAGATTAGT
1 TTCGATAAACAAATTTATTTTTTAAATCTATCACTTATTAAATTTCATAATATTAATAAATTAGT
* * ** * ** * *
71439 ATTATTTTATTTTGAAGAAGCTTGTATAAAGATAAATAATTGTTCAAATAGTCATAACTATTTGA
66 ATTATTTTATTTTGAAGAAGCTTGTATAAAGAAAAACAATTGTTCAAATAGAAAAAAAAAGTTCA
*
71504 ACTGA
131 AATGA
* * * *
71509 TTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTCA-AATATTAATAAATTAG
1 TTCGATAAACAAATTTATTTTTTAAATCTATCACTTATTAA-ATTTCATAATATTAATAAATTAG
* * * * **
71573 TATTTTTTTTATTTTGAATAGGCTTGTATAATGAAAAACAATTGTT-TTAT-GAAAAAAAAAGTT
65 TA-TTATTTTATTTTGAAGAAGCTTGTATAAAGAAAAACAATTGTTCAAATAGAAAAAAAAAGTT
71636 CATAATGA
129 CA-AATGA
71644 TT
1 TT
71646 TGAAACAATT
Statistics
Matches: 110, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
134 8 0.07
135 60 0.55
136 42 0.38
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (135 bp):
TTCGATAAACAAATTTATTTTTTAAATCTATCACTTATTAAATTTCATAATATTAATAAATTAGT
ATTATTTTATTTTGAAGAAGCTTGTATAAAGAAAAACAATTGTTCAAATAGAAAAAAAAAGTTCA
AATGA
Found at i:72251 original size:7 final size:7
Alignment explanation
Indices: 72239--72269 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
72229 TAGTTGATGC
72239 ATTTAAT
1 ATTTAAT
72246 ATTTAAT
1 ATTTAAT
72253 ATTTAAT
1 ATTTAAT
72260 ATTTAAT
1 ATTTAAT
72267 ATT
1 ATT
72270 AGATAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTTAAT
Found at i:72734 original size:16 final size:16
Alignment explanation
Indices: 72684--72741 Score: 68
Period size: 16 Copynumber: 3.7 Consensus size: 16
72674 ATTTTAAGAT
72684 TTAA-AATATTAAATATG
1 TTAATAATA-TAAATA-G
*
72701 TTATTAATAT-AATA-
1 TTAATAATATAAATAG
72715 TTAATAATATAAATAG
1 TTAATAATATAAATAG
72731 TTAATAATATA
1 TTAATAATATA
72742 TTAAATTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
14 9 0.25
15 4 0.11
16 15 0.42
17 4 0.11
18 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
TTAATAATATAAATAG
Found at i:72740 original size:30 final size:31
Alignment explanation
Indices: 72684--72741 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
72674 ATTTTAAGAT
*
72684 TTAAAATATTAAATATGTTATTAATATAATA
1 TTAAAATATTAAATATGTTAATAATATAATA
72715 TTAATAATA-TAAATA-GTTAATAATATA
1 TTAA-AATATTAAATATGTTAATAATATA
72742 TTAAATTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 11 0.44
31 10 0.40
32 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (31 bp):
TTAAAATATTAAATATGTTAATAATATAATA
Found at i:73351 original size:16 final size:16
Alignment explanation
Indices: 73330--73363 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
73320 AGCTTATTCG
73330 AAGTAA-AATATTTCTA
1 AAGTAATAATATTT-TA
73346 AAGTAATAATATTTTA
1 AAGTAATAATATTTTA
73362 AA
1 AA
73364 AATTAATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (16 bp):
AAGTAATAATATTTTA
Found at i:74287 original size:21 final size:23
Alignment explanation
Indices: 74263--74312 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 23
74253 GTATTTAGAC
* *
74263 TATTAGTTATTATTA-ATAT-TT
1 TATTAATTATAATTATATATATT
74284 TATTAATTATAATTATATATAATT
1 TATTAATTATAATTATATAT-ATT
74308 TATTA
1 TATTA
74313 TTTTACTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 13 0.54
22 4 0.17
24 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTAATTATAATTATATATATT
Found at i:74817 original size:26 final size:26
Alignment explanation
Indices: 74782--74846 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
74772 TTATTAATTT
74782 ATTATATATTAATAAATAAT-ATATAAG
1 ATTAT-TATTAAT-AATAATAATATAAG
* *
74809 ATTATTATTAGTAATAATAATATAAT
1 ATTATTATTAATAATAATAATATAAG
74835 ATTATTATTAAT
1 ATTATTATTAAT
74847 TATTAACTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.18
26 23 0.68
27 5 0.15
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (26 bp):
ATTATTATTAATAATAATAATATAAG
Found at i:74849 original size:33 final size:34
Alignment explanation
Indices: 74763--74851 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 34
74753 ATTAAAATCT
*
74763 TATAATA-AATTATTAATTTATTATATATTAATAA
1 TATAATATTATTATTAA-TTATTATATATTAATAA
**
74797 -ATAATATATAAGATT-ATTATTAGTA-A-TAATAA
1 TATAATAT-TATTATTAATTATTA-TATATTAATAA
74829 TATAATATTATTATTAATTATTA
1 TATAATATTATTATTAATTATTA
74852 ACTAATCGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
32 11 0.24
33 27 0.60
34 3 0.07
35 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (34 bp):
TATAATATTATTATTAATTATTATATATTAATAA
Found at i:75480 original size:24 final size:22
Alignment explanation
Indices: 75438--75484 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
75428 TTATCTAATC
*
75438 ATTTATTAAATTAAAATAATTT
1 ATTTATAAAATTAAAATAATTT
75460 ATTTATAATAATTATAAATAATTT
1 ATTTATAA-AATTA-AAATAATTT
75484 A
1 A
75485 ATCATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.32
23 5 0.23
24 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTATAAAATTAAAATAATTT
Found at i:75524 original size:17 final size:18
Alignment explanation
Indices: 75499--75548 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
75489 TATTATACAA
*
75499 TTATTATTATATATTAT-
1 TTATAATTATATATTATG
*
75516 TTATAATTATA-ATTTTG
1 TTATAATTATATATTATG
75533 TTATAATGTAT-TATTA
1 TTATAAT-TATATATTA
75549 ATCATAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 4 0.15
17 17 0.63
18 6 0.22
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (18 bp):
TTATAATTATATATTATG
Found at i:75615 original size:19 final size:18
Alignment explanation
Indices: 75591--75632 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
75581 CTATTTCAAC
75591 TAATTATACTAATTATTAA
1 TAATTATACTAATT-TTAA
*
75610 TAATTATATTAATTTTAA
1 TAATTATACTAATTTTAA
75628 TAATT
1 TAATT
75633 TTTAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTATACTAATTTTAA
Found at i:75760 original size:17 final size:18
Alignment explanation
Indices: 75735--75768 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75725 ATAATATTAT
75735 AAATATT-AATAAAGATA
1 AAATATTAAATAAAGATA
*
75752 AAATCTTAAATAAAGAT
1 AAATATTAAATAAAGAT
75769 TATAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (18 bp):
AAATATTAAATAAAGATA
Found at i:76108 original size:13 final size:13
Alignment explanation
Indices: 76098--76238 Score: 51
Period size: 13 Copynumber: 10.3 Consensus size: 13
76088 TATTATAAAT
76098 TTATATAATAATA
1 TTATATAATAATA
*
76111 TTATATAATTATA
1 TTATATAATAATA
76124 -TAGTATAA-AAT-
1 TTA-TATAATAATA
*
76135 TATATTATACTAA-A
1 T-TA-TATAATAATA
*
76149 TTAT-TAAATAGTA
1 TTATAT-AATAATA
76162 TTATAATAATAATTA
1 TTAT-ATAATAA-TA
*
76177 TT-TAATTAATTACTA
1 TTAT-A-TAA-TAATA
* *
76192 ATACTAATAATACTA
1 TTA-T-ATAATAATA
*
76207 TTATATAATCATTA
1 TTATATAAT-AATA
*
76221 TAATTATAATAATA
1 TTA-TATAATAATA
76235 TTAT
1 TTAT
76239 TTATCTAATA
Statistics
Matches: 98, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
11 1 0.01
12 8 0.08
13 36 0.37
14 21 0.21
15 24 0.24
16 5 0.05
17 3 0.03
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (13 bp):
TTATATAATAATA
Found at i:76111 original size:21 final size:21
Alignment explanation
Indices: 76065--76125 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
76055 TATTCATTGT
* *
76065 TAATATTAT-AATTATTTCTAA
1 TAATATTATAAATT-TATATAA
76086 T-ATATTATAAATTTATATAA
1 TAATATTATAAATTTATATAA
76106 TAATATTATATAA-TTATATA
1 TAATATTATA-AATTTATATA
76126 GTATAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 13 0.37
21 20 0.57
22 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATATTATAAATTTATATAA
Found at i:76117 original size:23 final size:22
Alignment explanation
Indices: 76087--76139 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
76077 TATTTCTAAT
76087 ATATTATA-AATTTATATA-ATA
1 ATATTATATAA-TTATATAGATA
76108 ATATTATATAATTATATAGTATA
1 ATATTATATAATTATATAG-ATA
*
76131 AAATTATAT
1 ATATTATAT
76140 TATACTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 15 0.54
22 2 0.07
23 11 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATTATATAATTATATAGATA
Found at i:76130 original size:28 final size:29
Alignment explanation
Indices: 76099--76238 Score: 113
Period size: 28 Copynumber: 4.6 Consensus size: 29
76089 ATTATAAATT
*
76099 TATATAATAATATTATATAATTA-TATAG
1 TATATAATAATATTATATAATTATTATAA
* * *
76127 TATAAAATTATATTATACTAAATTATTAAATAG
1 TATATAATAATATTATA-T-AATTATT--ATAA
*
76160 TATTATAATAATAATTATTTAATTAATTACTAA
1 TA-TATAATAAT-ATTATATAATT-ATTA-TAA
* *
76193 TACTAATAATACTATTATATAATCATTATAA
1 TA-T-ATAATAATATTATATAATTATTATAA
76224 T-TATAATAATATTAT
1 TATATAATAATATTAT
76239 TTATCTAATA
Statistics
Matches: 91, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
28 27 0.30
29 2 0.02
30 5 0.05
31 5 0.05
32 5 0.05
33 24 0.26
34 18 0.20
35 5 0.05
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (29 bp):
TATATAATAATATTATATAATTATTATAA
Found at i:76200 original size:31 final size:29
Alignment explanation
Indices: 76161--76241 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 29
76151 ATTAAATAGT
76161 ATTATAATAATAATTATTTAATTAATTACTA
1 ATTATAATAATAATTATTTAA-TAATTA-TA
* *
76192 A-TACTAATAATACTATTATATAATCATTATA
1 ATTA-TAATAATA--ATTATTTAATAATTATA
76223 ATTATAATAAT-ATTATTTA
1 ATTATAATAATAATTATTTA
76242 TCTAATAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
28 7 0.16
30 2 0.05
31 19 0.44
32 7 0.16
33 8 0.19
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (29 bp):
ATTATAATAATAATTATTTAATAATTATA
Found at i:76820 original size:28 final size:29
Alignment explanation
Indices: 76784--76868 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 29
76774 TAATAATATT
*
76784 ATTA-ATTATGAATAATACTAATTTTA-A
1 ATTAGATTATAAATAATACTAATTTTATA
** * * *
76811 ATTATCTTATTAAT-ATAATTATTTTATA
1 ATTAGATTATAAATAATACTAATTTTATA
*
76839 ATTAGATTA-AAATAATACTAATTTAATA
1 ATTAGATTATAAATAATACTAATTTTATA
76867 AT
1 AT
76869 ATCTCAAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
27 17 0.38
28 28 0.62
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (29 bp):
ATTAGATTATAAATAATACTAATTTTATA
Found at i:77133 original size:31 final size:31
Alignment explanation
Indices: 77097--77158 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
77087 ATAATTAAAA
*
77097 TTATTACTATTAGTT-ATATT-TTGACTATTAT
1 TTATTACTA-TAATTAATATTATT-ACTATTAT
*
77128 TTATTATTATAATTAATATTATTACTATTAT
1 TTATTACTATAATTAATATTATTACTATTAT
77159 AATAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 4 0.15
31 21 0.78
32 2 0.07
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (31 bp):
TTATTACTATAATTAATATTATTACTATTAT
Found at i:77158 original size:21 final size:20
Alignment explanation
Indices: 77122--77179 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
77112 ATATTTTGAC
*
77122 TATTATTTATTATTATAATTAA
1 TATTA-TTAATATTATAA-TAA
*
77144 TATTATTACTATTATAATAA
1 TATTATTAATATTATAATAA
*
77164 TAATTAATAATATTAT
1 T-ATTATTAATATTAT
77180 TATTTAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 23 0.72
22 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATTAATATTATAATAA
Found at i:77343 original size:22 final size:22
Alignment explanation
Indices: 77303--77403 Score: 62
Period size: 22 Copynumber: 4.5 Consensus size: 22
77293 TATAATTTAG
* *
77303 TTATGTTAATATATTATTAATAA
1 TTAT-TTATTATATAATTAATAA
*
77326 TTATTTATTATATAATTAAATCA
1 TTATTTATTATATAATT-AATAA
* * **
77349 -CAGTTATTATATAA-TAACCA
1 TTATTTATTATATAATTAATAA
* *
77369 TAATTTATAATAATAATTAATAA
1 TTATTTATTAT-ATAATTAATAA
*
77392 TTTATATATTAT
1 -TTATTTATTAT
77404 TTAAAATTAA
Statistics
Matches: 59, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
20 4 0.07
21 8 0.14
22 27 0.46
23 12 0.20
24 8 0.14
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
TTATTTATTATATAATTAATAA
Found at i:77432 original size:22 final size:22
Alignment explanation
Indices: 77369--77432 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
77359 ATAATAACCA
77369 TAATTTATA-ATAATAATT-AA-
1 TAATTTATATA-AATAATTAAAT
* *
77389 TAATTTATAT-ATTATTTAAAAT
1 TAATTTATATAAATAATT-AAAT
77411 TAATTTATATAAATAATTAAAT
1 TAATTTATATAAATAATTAAAT
77433 AGTATATACA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 5 0.14
20 9 0.26
21 2 0.06
22 14 0.40
23 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATTTATATAAATAATTAAAT
Found at i:77495 original size:23 final size:23
Alignment explanation
Indices: 77468--77524 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
77458 AATATTTTGT
77468 TAAATATAATTATTAATTAT-ATA
1 TAAATATAATT-TTAATTATAATA
* *
77491 TAAATAATAAATTTAATTATAATT
1 TAAAT-ATAATTTTAATTATAATA
77515 TAAATATAAT
1 TAAATATAAT
77525 AAGTTTATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 17 0.59
24 12 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TAAATATAATTTTAATTATAATA
Found at i:77523 original size:26 final size:25
Alignment explanation
Indices: 77467--77540 Score: 66
Period size: 26 Copynumber: 3.0 Consensus size: 25
77457 AAATATTTTG
*
77467 TTAAATATAAT-TA-TTAATTATAT
1 TTAAATATAATAAATTTAATTATAT
*
77490 AT-AA-ATAATAAATTTAATTATAAT
1 TTAAATATAATAAATTTAATTAT-AT
* *
77514 TTAAATATAATAAGTTTATAATATAT
1 TTAAATATAATAAATTTA-ATTATAT
77540 T
1 T
77541 AATATTATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
21 5 0.12
22 3 0.08
23 9 0.22
24 3 0.08
25 2 0.05
26 14 0.35
27 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
TTAAATATAATAAATTTAATTATAT
Found at i:77524 original size:17 final size:16
Alignment explanation
Indices: 77467--77524 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 16
77457 AAATATTTTG
77467 TTAAATATAATTATTAA
1 TTAAATATAATTA-TAA
*
77484 TTATATATAA--ATAA
1 TTAAATATAATTATAA
*
77498 -TAAATTTAATTATAA
1 TTAAATATAATTATAA
77513 TTTAAATATAAT
1 -TTAAATATAAT
77525 AAGTTTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 7 0.21
14 3 0.09
15 5 0.15
17 18 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAATATAATTATAA
Found at i:77538 original size:16 final size:15
Alignment explanation
Indices: 77489--77584 Score: 64
Period size: 16 Copynumber: 6.7 Consensus size: 15
77479 ATTAATTATA
*
77489 TATAA-ATAATAAAT
1 TATAATATAATAATT
77503 T-TAAT-T-ATAATT
1 TATAATATAATAATT
77515 TA-AATATAATAAGTT
1 TATAATATAATAA-TT
*
77530 TATAATATATTAATAT
1 TATAATATAATAAT-T
77546 TATAATATAAGT-A-T
1 TATAATATAA-TAATT
*
77560 TATTAT-TAAATAATT
1 TATAATAT-AATAATT
*
77575 TATCATATAA
1 TATAATATAA
77585 CTTTAACTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 23
0.70 0.05 0.25
Matches are distributed among these distances:
12 9 0.14
13 7 0.11
14 14 0.22
15 13 0.20
16 21 0.32
17 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (15 bp):
TATAATATAATAATT
Found at i:77553 original size:32 final size:30
Alignment explanation
Indices: 77468--77555 Score: 89
Period size: 30 Copynumber: 3.0 Consensus size: 30
77458 AATATTTTGT
77468 TAAA-TATAATTATTAATTATATATAA-ATAA
1 TAAATTATAATTATTAA-TAT-TATAATATAA
77498 TAAATT-TAATTA-TAAT-TTA-AATATAA
1 TAAATTATAATTATTAATATTATAATATAA
*
77524 TAAGTTTATAATATATTAATATTATAATATAA
1 TAA-ATTATAAT-TATTAATATTATAATATAA
77556 GTATTATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
25 2 0.04
26 9 0.18
27 3 0.06
28 5 0.10
29 5 0.10
30 14 0.29
31 4 0.08
32 7 0.14
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (30 bp):
TAAATTATAATTATTAATATTATAATATAA
Found at i:77791 original size:16 final size:17
Alignment explanation
Indices: 77772--77818 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
77762 TTATTCATAA
77772 AACTAATTA-TAATTAT
1 AACTAATTATTAATTAT
77788 AACTAATTATTAATTA-
1 AACTAATTATTAATTAT
77804 AA-T-ATT-TTAATTAT
1 AACTAATTATTAATTAT
77818 A
1 A
77819 TTATTAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.24
14 4 0.14
15 1 0.03
16 11 0.38
17 6 0.21
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
AACTAATTATTAATTAT
Found at i:79447 original size:18 final size:15
Alignment explanation
Indices: 79411--79448 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
79401 ATAAATTACA
79411 AATTAATTATAAAAT
1 AATTAATTATAAAAT
*
79426 -ATTAATTA-ATAAT
1 AATTAATTATAAAAT
79439 AATTAATTAT
1 AATTAATTAT
79449 TATCATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTAATTATAAAAT
Found at i:79521 original size:17 final size:17
Alignment explanation
Indices: 79495--79543 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
79485 AATTGTTACT
*
79495 TATAATTTATATTAA-AC
1 TATAAATTATA-TAATAC
*
79512 TATAAATTATATAATAT
1 TATAAATTATATAATAC
79529 TATAAATTAT-TAATA
1 TATAAATTATATAATA
79544 AATGCAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 8 0.28
17 21 0.72
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TATAAATTATATAATAC
Found at i:79588 original size:31 final size:29
Alignment explanation
Indices: 79553--79624 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 29
79543 AAATGCAACT
*
79553 ATTATAGTTATATTATCAAATAATAATATTA
1 ATTATA-TTATATTATAAAATAATAATA-TA
*
79584 ATTAT-TAATATT-TAAAATAATAATATA
1 ATTATATTATATTATAAAATAATAATATA
79611 ATT-TATTTATATTA
1 ATTATA-TTATATTA
79625 CTAGATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
26 1 0.03
27 5 0.14
28 18 0.51
29 6 0.17
31 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
ATTATATTATATTATAAAATAATAATATA
Found at i:79608 original size:28 final size:28
Alignment explanation
Indices: 79570--79623 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
79560 TTATATTATC
79570 AAATAATAATATTAA-TTATTAATATTTA
1 AAATAATAATA-TAATTTATTAATATTTA
*
79598 AAATAATAATATAATTTATTTATATT
1 AAATAATAATATAATTTATTAATATT
79624 ACTAGATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AAATAATAATATAATTTATTAATATTTA
Found at i:79701 original size:24 final size:26
Alignment explanation
Indices: 79664--79712 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
79654 ATTACTATAT
79664 AATATAAATATATTAGTAACAAATAA
1 AATATAAATATATTAGTAACAAATAA
* *
79690 AATAT-AAT-TATTATTAATAAATA
1 AATATAAATATATTAGTAACAAATA
79713 TTATTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 3 0.14
26 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
AATATAAATATATTAGTAACAAATAA
Found at i:79713 original size:19 final size:18
Alignment explanation
Indices: 79689--79756 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 18
79679 GTAACAAATA
79689 AAATATAATTATTATTAAT
1 AAATAT-ATTATTATTAAT
*
79708 AAATATTATTAATAAATTAAT
1 AAATA-TATT-AT-TATTAAT
79729 AAA-ATATTATT-TT-AT
1 AAATATATTATTATTAAT
79744 AAAGTAGTATTAT
1 AAA-TA-TATTAT
79757 CGATTAGTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
15 5 0.12
16 2 0.05
17 1 0.02
18 8 0.20
19 12 0.29
20 4 0.10
21 9 0.22
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
AAATATATTATTATTAAT
Found at i:79714 original size:13 final size:13
Alignment explanation
Indices: 79693--79724 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
79683 CAAATAAAAT
*
79693 ATAATTATTATTA
1 ATAAATATTATTA
79706 ATAAATATTATTA
1 ATAAATATTATTA
79719 ATAAAT
1 ATAAAT
79725 TAATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATAAATATTATTA
Found at i:80047 original size:15 final size:15
Alignment explanation
Indices: 80029--80138 Score: 55
Period size: 15 Copynumber: 7.1 Consensus size: 15
80019 AGTATTTTAT
80029 TAATTATAATTATTA
1 TAATTATAATTATTA
* **
80044 TAATTATAATAACAA
1 TAATTATAATTATTA
*
80059 T-ATT-TAATTATTTGT
1 TAATTATAATTA-TT-A
* *
80074 TAATAATATATTAGTAA
1 TAATTATA-ATTA-TTA
* *
80091 TAATTAAATATTAGTA
1 TAATTATA-ATTATTA
* *
80107 TATTATATAATTAATA
1 TAAT-TATAATTATTA
80123 TAATTATAATT-TTA
1 TAATTATAATTATTA
80137 TA
1 TA
80139 TTCATTAATA
Statistics
Matches: 69, Mismatches: 20, Indels: 13
0.68 0.20 0.13
Matches are distributed among these distances:
13 5 0.07
14 7 0.10
15 21 0.30
16 15 0.22
17 16 0.23
18 5 0.07
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (15 bp):
TAATTATAATTATTA
Found at i:80235 original size:19 final size:18
Alignment explanation
Indices: 80207--80248 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
80197 TTATTTGGAT
*
80207 ATTATTATTAATTAGTATA
1 ATTATAATTAATTA-TATA
80226 ATTATAATTAATTATATA
1 ATTATAATTAATTATATA
80244 ATTAT
1 ATTAT
80249 TTAAATCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATTATAATTAATTATATA
Found at i:80252 original size:16 final size:16
Alignment explanation
Indices: 80205--80252 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
80195 ATTTATTTGG
*
80205 ATATTATTA-TTAATT
1 ATATAATTATTTAATT
80220 AGTATAATTATAATTAATT
1 A-TATAATTAT--TTAATT
80239 ATATAATTATTTAA
1 ATATAATTATTTAA
80253 ATCATAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 1 0.04
16 11 0.39
18 9 0.32
19 7 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATAATTATTTAATT
Found at i:80416 original size:27 final size:26
Alignment explanation
Indices: 80376--80443 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
80366 TAGTTAATTA
*
80376 ATTATAAAATTAATTATATTATATTAAT
1 ATTAT-AAACTAATTATATTATA-TAAT
* * *
80404 GTTATAAACTAATTATTTTATATATT
1 ATTATAAACTAATTATATTATATAAT
80430 ATTATTAAACTAAT
1 ATTA-TAAACTAAT
80444 ATCTAATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.18
27 24 0.71
28 4 0.12
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (26 bp):
ATTATAAACTAATTATATTATATAAT
Found at i:80541 original size:40 final size:39
Alignment explanation
Indices: 80492--80589 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 39
80482 AATTAATATA
*
80492 ATTATTAATTGCTAATTAA-TA-TTAGTTATTAAAATTTAAT
1 ATTATTAATTGATAATTAATTATTTA-TT-TTAAAA-TTAAT
* *
80532 ATTATTAATTAATAATTAATTATTTATTTTATAATTAAT
1 ATTATTAATTGATAATTAATTATTTATTTTAAAATTAAT
* *
80571 ATAATTATATTGTTAATTA
1 ATTATTA-ATTGATAATTA
80590 TTTTACATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
39 11 0.22
40 31 0.63
41 4 0.08
42 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (39 bp):
ATTATTAATTGATAATTAATTATTTATTTTAAAATTAAT
Found at i:80550 original size:20 final size:20
Alignment explanation
Indices: 80492--80577 Score: 74
Period size: 20 Copynumber: 4.3 Consensus size: 20
80482 AATTAATATA
**
80492 ATTATTAATTGCTAATTAAT
1 ATTATTAATTAATAATTAAT
80512 ATTAGTT-ATTAA-AATTTAAT
1 ATTA-TTAATTAATAA-TTAAT
80532 ATTATTAATTAATAATTAATT
1 ATTATTAATTAATAATTAA-T
80553 ATTTATT--TT-ATAATTAAT
1 A-TTATTAATTAATAATTAAT
*
80571 ATAATTA
1 ATTATTA
80578 TATTGTTAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
17 4 0.07
18 2 0.04
19 12 0.21
20 27 0.48
21 6 0.11
22 5 0.09
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTATTAATTAATAATTAAT
Found at i:80685 original size:22 final size:22
Alignment explanation
Indices: 80643--80689 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
80633 AACATAAGTT
*
80643 TATAAATAATTTATAAATTAAC
1 TATAAATAATTTAGAAATTAAC
*
80665 TATAAAT-ATTTAGAATTTTAAC
1 TATAAATAATTTAGAA-ATTAAC
80687 TAT
1 TAT
80690 TAATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (22 bp):
TATAAATAATTTAGAAATTAAC
Found at i:83305 original size:23 final size:24
Alignment explanation
Indices: 83261--83342 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 24
83251 TAAGTAATTA
83261 AATTATTAATTAATAACA--ATTATT
1 AATTATT-ATTAATAA-ATTATTATT
83285 -ATTATTATT-ATAAATATATTATT
1 AATTATTATTAATAAAT-TATTATT
* *
83308 CAGTA-TATTAATAAATTATATACTT
1 AATTATTATTAATAAATTAT-TA-TT
83333 AATTATTATT
1 AATTATTATT
83343 TAGTAATTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
20 1 0.02
21 4 0.09
22 3 0.06
23 19 0.40
24 11 0.23
25 5 0.11
26 4 0.09
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (24 bp):
AATTATTATTAATAAATTATTATT
Found at i:83514 original size:29 final size:29
Alignment explanation
Indices: 83453--83514 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
83443 AATAAATTCA
*
83453 TAATT-TTATAATTATAATAATATTAAAT
1 TAATTATTATAATTATAATAATAATAAAT
*
83481 T-ATTATTATAACTTATAATAA-AATAACT
1 TAATTATTATAA-TTATAATAATAATAAAT
83509 TAATTA
1 TAATTA
83515 CTGTTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 3 0.10
28 13 0.45
29 13 0.45
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TAATTATTATAATTATAATAATAATAAAT
Found at i:83709 original size:18 final size:18
Alignment explanation
Indices: 83686--83720 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
83676 GTCTAATTAA
83686 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
83704 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
83721 ATAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:83721 original size:25 final size:25
Alignment explanation
Indices: 83679--83753 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 25
83669 TATATATGTC
*
83679 TAATTAAATTATATAATAAATAATTA
1 TAATTACA-TATATAATAAATAATTA
*
83705 TTATATA-ATATATAATATAA-AATTA
1 TAAT-TACATATATAATA-AATAATTA
*
83730 TAATTACATATTATAATAATTAAT
1 TAATTACATA-TATAATAAATAAT
83754 ATGATTCATA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
24 2 0.05
25 21 0.51
26 16 0.39
27 2 0.05
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATTACATATATAATAAATAATTA
Found at i:83861 original size:18 final size:19
Alignment explanation
Indices: 83838--83873 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
83828 AATTATTATA
83838 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
83856 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
83874 ATGACAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:84847 original size:44 final size:43
Alignment explanation
Indices: 84761--84847 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 43
84751 TTCAGTATAA
* *
84761 ATTTATTTATTAAATTTCTTAACGTATAATTTAAATATATTAT
1 ATTTATTTATTAAATTTCGTAACGTATAATTGAAATATATTAT
*
84804 ATTTAGTTTATTAAATTT-GTAAGCTTATTAATTGAAATA-ATTAT
1 ATTTA-TTTATTAAATTTCGTAA-CGTA-TAATTGAAATATATTAT
84848 TTATGATCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
43 8 0.21
44 20 0.53
45 10 0.26
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (43 bp):
ATTTATTTATTAAATTTCGTAACGTATAATTGAAATATATTAT
Found at i:84993 original size:27 final size:27
Alignment explanation
Indices: 84963--85017 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
84953 TTAATTTATA
84963 TATACAAACTAAATTATTATAAATAAT
1 TATACAAACTAAATTATTATAAATAAT
* * * *
84990 TATATATATTAAATTATTATATATAAT
1 TATACAAACTAAATTATTATAAATAAT
85017 T
1 T
85018 GCAATTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (27 bp):
TATACAAACTAAATTATTATAAATAAT
Found at i:85023 original size:19 final size:18
Alignment explanation
Indices: 84982--85030 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
84972 TAAATTATTA
84982 TAAA-TAATTATATATAT
1 TAAATTAATTATATATAT
84999 TAAATT-ATTATATATAAT
1 TAAATTAATTATATAT-AT
*
85017 TGCAATTAATTATA
1 T-AAATTAATTATA
85031 ATGTAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 13 0.48
18 4 0.15
19 4 0.15
20 6 0.22
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
TAAATTAATTATATATAT
Found at i:85185 original size:18 final size:18
Alignment explanation
Indices: 85161--85202 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
85151 TTTTTACAAA
*
85161 ATAATTATATAATTATTAT
1 ATAATTAT-TAATTAATAT
85180 -TAATTATTAATTAATAT
1 ATAATTATTAATTAATAT
85197 ATAATT
1 ATAATT
85203 TGTTTACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATAATTATTAATTAATAT
Found at i:85282 original size:16 final size:16
Alignment explanation
Indices: 85261--85329 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 16
85251 AATATAAATA
85261 AAATAATAATTTATTT
1 AAATAATAATTTATTT
*
85277 AAATAATAATTCATTAT
1 AAATAATAATTTATT-T
* *
85294 TAATAAATTATTTATTTT
1 AAAT-AATAATTTA-TTT
* *
85312 AAATATTATTTTATTT
1 AAATAATAATTTATTT
85328 AA
1 AA
85330 TTTTATAATC
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
16 19 0.45
17 10 0.24
18 11 0.26
19 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (16 bp):
AAATAATAATTTATTT
Found at i:85676 original size:21 final size:20
Alignment explanation
Indices: 85629--85677 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
85619 CAAAATACTA
*
85629 ATTTTAATCTATTATAATTT
1 ATTTTAATCAATTATAATTT
85649 A-TTTAAT-AATTATAATTAAT
1 ATTTTAATCAATTATAATT--T
85669 ATTTTAATC
1 ATTTTAATC
85678 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 9 0.38
19 6 0.25
20 3 0.12
21 6 0.25
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTAATCAATTATAATTT
Found at i:87156 original size:356 final size:355
Alignment explanation
Indices: 86486--87156 Score: 743
Period size: 356 Copynumber: 1.9 Consensus size: 355
86476 AATAAATTGA
* * *
86486 TTTATTTTTTAAATCTTTTCATTTTTAAAATATTAAGAAAAGTAGTATTATTTTATTTTGGATAA
1 TTTATTTTTTAAATCTTTTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGAATAA
* * * *
86551 ACTTTTGTGAACTAAAACAATTGTTTTATGACAAAACAAAAATTCACAACGATTTTAAATAGATA
66 ACTTATGTGAACAAAAACAATTGTTTTATGACAAAACAAAAATTCACAACAATTTGAAATAGATA
* ** *
86616 ATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTAGTTTTTCCAATATCCT
131 ATTGTTCAAATAGTCATAACTATTAGAACTTGTTTGAAAAACAGATTTAGTTTTTCAAATATCCT
* * *
86681 GCTTATTAATCTTTCAAAAGTTAATAAATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAACT
196 GCTTAATAATCTTTCAAAAGTTAATAAAGTAGTATTATTTTCTTTAGAATAAGCTTGTATGAACT
* ** * * *
86746 GAAACAATTATTTTATGATTAAACAAAAGGTTAGAACGATTTGAAATAGATAATTATTCAATAAT
261 AAAACAATTATTTTATGACGAAACAAAAGGTCAAAACAATTTGAAATAGATAATTATTCAATAAT
86811 CTTAACTATTTGAACTGATTGACAAACACG
326 CTTAACTATTTGAACTGATTGACAAACACG
** *
86841 TTTATTTTTTAAATCTCTTATTAATTTTCAAAATATTATTAAAATTAGTATTATTTT-TTATCTG
1 TTTATTTTTTAAA--TCTT-TTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATT-T-TG
* * * *
86905 AATTAGCTTATGTGATA-AAAAACAATTGTTTTATGAC-AAACAAAGA-TCA-TACAATTTGATA
61 AATAAACTTATGTGA-ACAAAAACAATTGTTTTATGACAAAACAAAAATTCACAACAATTTGA-A
* * ** * *
86966 TTA-ATATTTTGTTCAAAATAGTCATTGCTATTAGAA-TTGCTTTGAAAAATAGCTTTAGTTTTT
124 ATAGATA-ATTGTTC-AAATAGTCATAACTATTAGAACTTG-TTTGAAAAACAGATTTAGTTTTT
* * * * * *
87029 -AAATCTCTTGCTTAATAATTTTTGAAATA-TTAAT-AAGTAGTATTATTTTATTTTAG-ATAAT
186 CAAATATCCTGCTTAATAATCTTTCAAA-AGTTAATAAAGTAGTATTATTTT-CTTTAGAATAAG
* * * * * * *
87090 TTTTTATTAACTAAAACAATTGTTTTATGACGAAACAAAATGTCAAAATAATTTTAAATAGATAA
249 CTTGTATGAACTAAAACAATTATTTTATGACGAAACAAAAGGTCAAAACAATTTGAAATAGATAA
87155 TT
314 TT
87157 GTTTAAATAG
Statistics
Matches: 258, Mismatches: 46, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
355 13 0.05
356 82 0.32
357 51 0.20
358 79 0.31
359 32 0.12
360 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.43
Consensus pattern (355 bp):
TTTATTTTTTAAATCTTTTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGAATAA
ACTTATGTGAACAAAAACAATTGTTTTATGACAAAACAAAAATTCACAACAATTTGAAATAGATA
ATTGTTCAAATAGTCATAACTATTAGAACTTGTTTGAAAAACAGATTTAGTTTTTCAAATATCCT
GCTTAATAATCTTTCAAAAGTTAATAAAGTAGTATTATTTTCTTTAGAATAAGCTTGTATGAACT
AAAACAATTATTTTATGACGAAACAAAAGGTCAAAACAATTTGAAATAGATAATTATTCAATAAT
CTTAACTATTTGAACTGATTGACAAACACG
Found at i:87299 original size:180 final size:179
Alignment explanation
Indices: 86564--87530 Score: 642
Period size: 180 Copynumber: 5.4 Consensus size: 179
86554 TTTGTGAACT
* * *
86564 AAAACAATTGTTTTATGACAAAACAAAA--ATTCACAACGATTTTAAATAGATAATTGTTCAAAT
1 AAAACAATTGTTTTATGAC-AAACAAAAGGA-TCAAAACGATTTGAAATAGATAATTGTTTAAAT
* * ** ** * * *
86627 AGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTAGTTTTTCCAATATCCTGCTTATTAATC
64 AGTCATAACTATTTGAAATTGCTCAGTAAACAGATTTA-TTTTTTAAATCTCTTGC-T-TTAATT
* * * *
86692 TTTC-AAAAGTTAATAAATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAACTG
126 TTTCGAATA-TTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAA-TG
* * * * * *
86747 -AAACAATTATTTTATGATTAAACAAAAGG-TTAGAACGATTTGAAATAGATAATT-ATTCAATA
1 AAAACAATTGTTTTATGA-CAAACAAAAGGATCAAAACGATTTGAAATAGATAATTGTTTAAATA
* * * * * * *
86809 ATCTTAACTATTTG-AACTGAT-TGACAAACACG-TTTATTTTTTAAATCTCTT--ATTAA-TTT
65 GTCATAACTATTTGAAATTGCTCAG-TAAACA-GATTTATTTTTTAAATCTCTTGCTTTAATTTT
* * * ** * * * *
86868 TCAAAATATTATTAAAATTAGTATTATTTTTTATCTGAATTAGCTTATGTG-ATAA
128 TC-GAATATTAAT-AAATTAGTATTATTTTAT-TCCAAATAAGCTTGTATGAAT-G
* * * * *
86923 AAAACAATTGTTTTATGACAAAC-AAA-GATC-ATACAATTTGATATTA-ATATTTTGTTCAAAA
1 AAAACAATTGTTTTATGACAAACAAAAGGATCAAAACGATTTGA-AATAGATA-ATTGTT-TAAA
** * ** * * * *
86984 TAGTCATTGCTATTAG-AATTGCTTTGAAAAATAGCTTTAGTTTTTAAATCTCTTGCTTAATAAT
63 TAGTCATAACTATTTGAAATTGCTCAG-TAAACAGATTTATTTTTTAAATCTCTTGCTT--TAAT
* ** * ** * *
87048 TTTT-GAAATATTAAT-AAGTAGTATTATTTTATTTTAGATAATTTTTTATTAACT-
125 TTTTCG-AATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAA-TG
* ** *
87102 AAAACAATTGTTTTATGACGAAACAAAATG-TCAAAATAATTTTAAATAGATAATTGTTTAAATA
1 AAAACAATTGTTTTATGAC-AAACAAAAGGATCAAAACGATTTGAAATAGATAATTGTTTAAATA
*
87166 GTCATATCTATTTGAAATTGCTCAGTAAACAGATTTATTTTTTTAAATCTCTTGCTTTAATTTTT
65 GTCATAACTATTTGAAATTGCTCAGTAAACAGATTTA-TTTTTTAAATCTCTTGCTTTAATTTTT
*
87231 CGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATG
129 CGAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATG
* * * * * *
87282 AAAATAATTGCTTTATGACTAAACAAAAGGAT-AGAATGATTTGAAATAGATAATTATTCT-GAT
1 AAAACAATTGTTTTATGAC-AAACAAAAGGATCAAAACGATTTGAAATAGATAATTGTT-TAAAT
* * * * * * * * *
87345 AGCCTTAACTATTTGAACTAGTTCAACT-AACATATTTATTTTGTAAATCTCTT--ATTAATTTT
64 AGTCATAACTATTTGAAATTGCTC-AGTAAACAGATTTATTTTTTAAATCTCTTGCTTTAATTTT
* * * *
87407 T-GAAATATTATTAAATTAGTATCATTTTAATCCAAATAAGCTTGTATGAAAG
128 TCG-AATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATG
* * * ** * * *
87459 GAAACAATTGTTGTATGACAAA-AAAAAGATCATTATGATTTGAGATAGATAATTGTTCAAATAG
1 AAAACAATTGTTTTATGACAAACAAAAGGATCAAAACGATTTGAAATAGATAATTGTTTAAATAG
87523 TCATAACT
66 TCATAACT
87531 TATATTAATA
Statistics
Matches: 616, Mismatches: 126, Indels: 91
0.74 0.15 0.11
Matches are distributed among these distances:
174 16 0.03
175 25 0.04
176 62 0.10
177 116 0.19
178 25 0.04
179 71 0.12
180 166 0.27
181 62 0.10
182 69 0.11
183 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (179 bp):
AAAACAATTGTTTTATGACAAACAAAAGGATCAAAACGATTTGAAATAGATAATTGTTTAAATAG
TCATAACTATTTGAAATTGCTCAGTAAACAGATTTATTTTTTAAATCTCTTGCTTTAATTTTTCG
AATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATG
Found at i:87678 original size:24 final size:22
Alignment explanation
Indices: 87629--87694 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 22
87619 GATTATTAGT
* *
87629 ATTAT-ATTTATATTATAATACT
1 ATTATAATTTATA-TATATTACA
87651 ATTATTCAATTTATATATATTACA
1 ATTA-T-AATTTATATATATTACA
87675 ATTATAATCTTATA-ATATTA
1 ATTATAAT-TTATATATATTA
87695 TAATATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 13 0.34
23 7 0.18
24 11 0.29
25 7 0.18
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTATAATTTATATATATTACA
Found at i:87689 original size:8 final size:8
Alignment explanation
Indices: 87675--87740 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
87665 ATATATTACA
87675 ATTATAAT
1 ATTATAAT
*
87683 CTTATAAT
1 ATTATAAT
87691 ATTATAAT
1 ATTATAAT
87699 ATTAT--T
1 ATTATAAT
*
87705 ATT-TATT
1 ATTATAAT
*
87712 ATTAAAAT
1 ATTATAAT
87720 ATT-TAAAT
1 ATTAT-AAT
87728 AATTATTAAT
1 -ATTA-TAAT
87738 ATT
1 ATT
87741 TTTAATTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 4 0.09
8 27 0.59
9 6 0.13
10 3 0.07
11 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (8 bp):
ATTATAAT
Found at i:87754 original size:20 final size:20
Alignment explanation
Indices: 87695--87756 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
87685 TATAATATTA
* *
87695 TAATATTATTATTTAT-TAT
1 TAATATTTTTAATTATATAT
* * *
87714 TAAAATATTTAAATA-ATTAT
1 TAATATTTTTAATTATA-TAT
87734 TAATATTTTTAATTATATAT
1 TAATATTTTTAATTATATAT
87754 TAA
1 TAA
87757 ATAAATTAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
19 10 0.31
20 21 0.66
21 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATATTTTTAATTATATAT
Found at i:88424 original size:180 final size:177
Alignment explanation
Indices: 87953--88944 Score: 696
Period size: 180 Copynumber: 5.5 Consensus size: 177
87943 TAGCCGAACT
* ** * **
87953 AGTTCAAATAGTTAAGACTATGAGAATAATTATCTATTTCAAATCATTCT-ATTCTTTTGTTCAG
1 AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGA-TC-TTTGTTTTG
* * * * * *
88017 TCATAAAACAATTATTTCAGTTCATACAAGCTTATTTAAAATAAAATAATACTAATTTATTAACA
64 TCATAAAACAATTTTTTCAATTCATACAAGCTCATTCAAAAGAAAATAATACTAATTTATTAATA
* * **
88082 -TTCAAAAAATT-A-AAGCAAGAGATTTAAAAAATAAATCTGTTTACTGAAC
129 TTTC-AAAAATTAATAAGCAAGAGATTTAAAAACTAAA--TGTTTTCCAAAC
* * * * * * * * *
88131 AATTTCAAATAGATATGACTATTTAAACAATTATCTGTTTAAAATTATTTTGA-CATTTTATTTT
1 -AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGATC--TTTGTTTT
* * * * ** * * * *
88195 GTCATAAAACAATTATTTCAGTTAATAAAAATTTA-TCTGAAATAAAATAATACTACTTTATTAA
63 GTCATAAAACAATTTTTTCAATTCATACAAGCTCATTC-AAAAGAAAATAATACTAATTTATTAA
* *
88259 TATTTCAAAAATTATTAAGCAAGAGATTTAAAAACTAAAGCTGTTTTTCAAAGC
127 TATTTCAAAAATTAATAAGCAAGAGATTTAAAAACTAAA--TGTTTTCCAAA-C
* * * * *
88313 AGTTCTAATAGTTATGACTGTTTGAATAAATAT-TAATCTCAAATCGTTATGATCTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAATAATTATCT-ATTTCAAATCATTATGATCTTTGTTTTGT
** * * *
88377 CATAAAACAATTATTTTTTA-TCATATAAGCTCATTCACATA-AAAATAATACTAATTTAATAAT
65 CATAAAACAATT-TTTTCAATTCATACAAGCTCATTCA-AAAGAAAATAATACTAATTTATTAAT
** * * * * *
88440 ATTTTGAAAATTAGTAAGTAAGAGATTTAAAAAATAAATGTGTTTGCTAATC
128 ATTTCAAAAATTAATAAGCAAGAGATTTAAAAACTAAATGT-TTT-CCAAAC
* * * * * * **
88492 AATTCAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCATTTTGACCTTTTGTTTAAT
1 AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGATC-TTTGTTTTGT
* *
88557 CATAAAATAATTTTTTCAATTCATACAAGCTTATTCAAAAGAAAATAATACTAATTTATTAACT-
65 CATAAAACAATTTTTTCAATTCATACAAGCTCATTCAAAAGAAAATAATACTAATTTATTAA-TA
* * * * *
88621 TTTGAAAGATTAATAAGCAGGATATTTAAAAAACTAAATTTGTTTACCAAAC
129 TTTCAAAAATTAATAAGCAAGAGATTT-AAAAACTAAA--TGTTTTCCAAAC
* * * *
88673 AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTACGAATTTTTGTTTTG
1 -AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATG-ATCTTTGTTTTG
* * * * * * * *
88738 TCATAAAACAATTGTTTT-AGTTCACAAAAGTTTATCCAAAATAAAATAATACTACTTT-TCCTA
64 TCATAAAACAATT-TTTTCAATTCATACAAGCTCATTCAAAAGAAAATAATACTAATTTAT--TA
** * * *
88801 ATATTTTGAAAA-T--T----AAGAGATTTAAAAAATAAAT-TAGTTTACTAAC
126 ATATTTCAAAAATTAATAAGCAAGAGATTTAAAAACTAAATGT--TTTCCAAAC
* * * * * *
88847 TTAGTTTAAATAATTATGGCTATTTGAACAATTATCTATTTCAAATCATTATTACCTTTCGTTTT
1 --AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGATCTTT-GTTTT
88912 GTCATAAAACAATTGTTTTTCAA--CATACAAGCT
63 GTCATAAAACAA-T-TTTTTCAATTCATACAAGCT
88945 TATTTGAAAT
Statistics
Matches: 641, Mismatches: 137, Indels: 74
0.75 0.16 0.09
Matches are distributed among these distances:
172 1 0.00
173 1 0.00
174 10 0.02
175 78 0.12
176 12 0.02
177 2 0.00
178 5 0.01
179 160 0.25
180 165 0.26
181 89 0.14
182 101 0.16
183 17 0.03
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGATCTTTGTTTTGTC
ATAAAACAATTTTTTCAATTCATACAAGCTCATTCAAAAGAAAATAATACTAATTTATTAATATT
TCAAAAATTAATAAGCAAGAGATTTAAAAACTAAATGTTTTCCAAAC
Found at i:88604 original size:360 final size:360
Alignment explanation
Indices: 87922--88948 Score: 966
Period size: 360 Copynumber: 2.9 Consensus size: 360
87912 AAAATTAATA
** * * * ** * *
87922 AGATTTAAAAAA-TAAATATG-TTAGCCGAACTAGTTCAAATAGTTAAGACTATGAGAATAATTA
1 AGATTTAAAAAACTAAAGCTGTTTA-CCAAACAAGTTCAAATAGTTATGACTATTTGAACAAATA
* * * * ** * *
87985 TCTATTTCAAATCATT-CTATTCTTTTGTTCAGTCATAAAACAATTATTTCAGTTCATACAAGCT
65 TCTATCTAAAATCATTACGAATC-TTTGTTTTGTCATAAAACAATTATTT-TGTTCATAAAAGCT
* * * *** *
88049 TATTTAAAATAAAATAATACTAATTTATTAACATTCAAAAAATTA-AAGCAAGAGATTTAAAAAA
128 TATTCAAAATAAAATAATACTAATTTAATAATATTTTGAAAATTATAAGTAAGAGATTTAAAAAA
* * *
88113 TAAATCTGTTTACTGAA-CAATTTCAAATAGATATGACTATTTA-AACAATTATCTGTTTAAAAT
193 TAAAT-TGTTTACT-AATCAA-TTCAAATAGTTATGACTA-TTAGAACAATTATCTATTTCAAAT
* * * * * * * ** * *
88176 TATTTTGACATTTTATTTTGTCATAAAACAATTATTTCAGTTAATAAAAATTTA-TCTGAAATAA
254 CATTTTGACCTTTTGTTTTGTCATAAAACAATTTTTTCAATTCATACAAGCTTATTCTAAAAGAA
* *
88240 AATAATACTACTTTATTAA-TATTTCAAAAATTATTAAGCAAG
319 AATAATACTAATTTATTAACT-TTTCAAAAATTAATAAGCAAG
** * * *
88282 AGATTT-AAAAACTAAAGCTGTTTTTCAAAGC-AGTTCTAATAGTTATGACTGTTTGAATAAATA
1 AGATTTAAAAAACTAAAGCTGTTTACCAAA-CAAGTTCAAATAGTTATGACTATTTGAACAAATA
* * * * *
88345 T-TAATCTCAAATCGTTATG-ATCTTTGTTTTGTCATAAAACAATTATTTTTTATCATATAAGCT
65 TCT-ATCTAAAATCATTACGAATCTTTGTTTTGTCATAAAACAATTATTTTGT-TCATAAAAGCT
* *
88408 CATTC-ACATAAAAATAATACTAATTTAATAATATTTTGAAAATTAGTAAGTAAGAGATTTAAAA
128 TATTCAAAAT-AAAATAATACTAATTTAATAATATTTTGAAAATTA-TAAGTAAGAGATTTAAAA
* * * *
88472 AATAAATGTGTTTGCTAATCAATTCAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATC
191 AATAAAT-TGTTTACTAATCAATTCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATC
** *
88537 ATTTTGACCTTTTGTTTAATCATAAAATAATTTTTTCAATTCATACAAGCTTATTC-AAAAGAAA
255 ATTTTGACCTTTTGTTTTGTCATAAAACAATTTTTTCAATTCATACAAGCTTATTCTAAAAGAAA
* * *
88601 ATAATACTAATTTATTAACTTTTGAAAGATTAATAAGCAGG
320 ATAATACTAATTTATTAACTTTTCAAAAATTAATAAGCAAG
* ** *
88642 ATATTTAAAAAACTAAATTTGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT
1 AGATTTAAAAAACTAAAGCTGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAAATAT
* * * * *
88707 CTATTTAAAATCATTACGAATTTTTGTTTTGTCATAAAACAATTGTTTTAGTTCACAAAAGTTTA
66 CTATCTAAAATCATTACGAATCTTTGTTTTGTCATAAAACAATTATTTT-GTTCATAAAAGCTTA
* * **
88772 TCCAAAATAAAATAATACTACTTTTCCTAATATTTTG-AAA--AT---TAAGAGATTTAAAAAAT
130 TTCAAAATAAAATAATACTA-ATTTAATAATATTTTGAAAATTATAAGTAAGAGATTTAAAAAAT
* * * * * *
88831 AAATTAGTTTACTAACTTAGTTTAAATAATTATGGCTATTTGAACAATTATCTATTTCAAATCAT
194 AAATT-GTTTACTAA-TCAATTCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCAT
*
88896 TATT-ACCTTTCGTTTTGTCATAAAACAATTGTTTTTCAA--CATACAAGCTTATT
257 T-TTGACCTTTTGTTTTGTCATAAAACAA-T-TTTTTCAATTCATACAAGCTTATT
88949 TGAAATAAAA
Statistics
Matches: 546, Mismatches: 96, Indels: 53
0.79 0.14 0.08
Matches are distributed among these distances:
355 1 0.00
356 29 0.05
357 75 0.14
358 7 0.01
359 85 0.16
360 178 0.33
361 99 0.18
362 55 0.10
363 17 0.03
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (360 bp):
AGATTTAAAAAACTAAAGCTGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAAATAT
CTATCTAAAATCATTACGAATCTTTGTTTTGTCATAAAACAATTATTTTGTTCATAAAAGCTTAT
TCAAAATAAAATAATACTAATTTAATAATATTTTGAAAATTATAAGTAAGAGATTTAAAAAATAA
ATTGTTTACTAATCAATTCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCATTTTG
ACCTTTTGTTTTGTCATAAAACAATTTTTTCAATTCATACAAGCTTATTCTAAAAGAAAATAATA
CTAATTTATTAACTTTTCAAAAATTAATAAGCAAG
Found at i:88913 original size:175 final size:176
Alignment explanation
Indices: 87922--88930 Score: 659
Period size: 179 Copynumber: 5.6 Consensus size: 176
87912 AAAATTAATA
* * ** *
87922 AGATTTAAAAAATAAATATG-TTAGCCGAACT-AGTTCAAATAGTTAAGACTATGAGAATAATTA
1 AGATTTAAAAAATAAAT-TGTTTA--CTAACTAAGTTCAAATAGTTATGACTATTTGAACAATTA
** * * * *
87985 TCTATTTCAAATCATTCTATT--CTTTTGTTCAGTCATAAAACAATT-ATTTCAGTTCATACAAG
63 TCTATTTCAAATCA-T-TATTACCTTTTGTTTTGTCATAAAACAATTGTTTTCAATTCACAAAAG
** * ** * *
88047 CTTATTTAAAATAAAATAATACTAATTTATTAACA-TTCAAAAAATTAAAGCAAG
126 CTTATCCAAAAGAAAATAATACTAATTTATTAA-ATTTTGAAAGATT--A-TAAG
* * *
88101 AGATTTAAAAAATAAATCTGTTTACTGAAC-AATTTCAAATAGATATGACTATTTAAACAATTAT
1 AGATTTAAAAAATAAAT-TGTTTACT-AACTAAGTTCAAATAGTTATGACTATTTGAACAATTAT
* * * * * * * * * **
88165 CTGTTTAAAATTATT-TTGACATTTTATTTTGTCATAAAACAATT-ATTTCAGTTAATAAAAATT
64 CTATTTCAAATCATTATT-ACCTTTTGTTTTGTCATAAAACAATTGTTTTCAATTCACAAAAGCT
** * * * *
88228 TATCTGAAATAAAATAATACTACTTTATT-AATATTTCAAAAATTATTAAGCAAG
128 TATCCAAAAGAAAATAATACTAATTTATTAAAT-TTTGAAAGATTA-T----AAG
* * * * * * * *
88282 AGATTTAAAAACTAAAGCTGTTTTTCAAAGC--AGTTCTAATAGTTATGACTGTTTGAATAAATA
1 AGATTTAAAAAATAAA-TTG-TTTACTAA-CTAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * * ** * *
88345 T-TAATCTCAAATCGTTATGATC-TTTGTTTTGTCATAAAACAATTATTTTTTA-TCATATAAGC
63 TCT-ATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAACAATTGTTTTCAATTCACAAAAGC
* * * *
88407 TCATTCACATA-AAAATAATACTAATTTAATAATATTTTGAAA-ATTAGTAAGTAAG
127 TTATCCA-AAAGAAAATAATACTAATTTATTAA-ATTTTGAAAGA-T--T-A-TAAG
* * * * *
88462 AGATTTAAAAAATAAATGTGTTTGCTAA-TCAA-TTCAAATAGTTAAGATTATTAGAATAATTAT
1 AGATTTAAAAAATAAAT-TGTTTACTAACT-AAGTTCAAATAGTTATGACTATTTGAACAATTAT
** * * *
88525 CTATTTCAAATCATT-TTGACCTTTTGTTTAATCATAAAATAATT-TTTTCAATTCATACAAGCT
64 CTATTTCAAATCATTATT-ACCTTTTGTTTTGTCATAAAACAATTGTTTTCAATTCACAAAAGCT
* *
88588 TATTCAAAAGAAAATAATACTAATTTATTAACTTTTGAAAGATTAATAAG
128 TATCCAAAAGAAAATAATACTAATTTATTAAATTTTGAAAGATT-ATAAG
*
88638 CAGGATATTTAAAAAACTAAATTTGTTTACCAAAC-AAGTTCAAATAGTTATGACTATTTGAACA
1 -A-G--ATTTAAAAAA-TAAA-TTGTTTA-CTAACTAAGTTCAAATAGTTATGACTATTTGAACA
* ** ** *
88702 ATTATCTATTTAAAATCATTACGAATTTTTGTTTTGTCATAAAACAATTGTTTT-AGTTCACAAA
59 ATTATCTATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAACAATTGTTTTCAATTCACAAA
* * *
88766 AGTTTATCCAAAATAAAATAATACTACTTT-TCCTAATATTTTGAAA-A-T-TAAG
124 AGCTTATCCAAAAGAAAATAATACTAATTTAT--TAA-ATTTTGAAAGATTATAAG
* * * *
88818 AGATTTAAAAAATAAATTAGTTTACTAACTTAGTTTAAATAATTATGGCTATTTGAACAATTATC
1 AGATTTAAAAAATAAATT-GTTTACTAACTAAGTTCAAATAGTTATGACTATTTGAACAATTATC
*
88883 TATTTCAAATCATTATTACCTTTCGTTTTGTCATAAAACAATTGTTTT
65 TATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAACAATTGTTTT
88931 TCAACATACA
Statistics
Matches: 658, Mismatches: 121, Indels: 106
0.74 0.14 0.12
Matches are distributed among these distances:
174 6 0.01
175 82 0.12
176 16 0.02
177 7 0.01
178 6 0.01
179 189 0.29
180 143 0.22
181 82 0.12
182 108 0.16
183 9 0.01
184 10 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (176 bp):
AGATTTAAAAAATAAATTGTTTACTAACTAAGTTCAAATAGTTATGACTATTTGAACAATTATCT
ATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAACAATTGTTTTCAATTCACAAAAGCTTAT
CCAAAAGAAAATAATACTAATTTATTAAATTTTGAAAGATTATAAG
Found at i:89445 original size:181 final size:177
Alignment explanation
Indices: 88956--89527 Score: 446
Period size: 180 Copynumber: 3.2 Consensus size: 177
88946 ATTTGAAATA
* * * * ** * *
88956 AAATTGTTAGTACT-TTTTGTTTTGTCATAAAATAATTATTTTTGAAT-GTATAAGTTTACCTGA
1 AAATTGTTA-TAATATTTTGTTTTGTCATAAAACAATTA--TTTCAGTCGTATAAACTTA-TTCA
* * * *
89019 AATAAAATAATACTAATTTATTAATATTTGAAGAA-T-TA-GTATGAGATTCAAAAAATAAATCT
62 AATAAAATAATACTAATTTATTAATATTTGAAAAATTATACGTAAGAGATT-TAAAAATAAATTT
* * * *
89081 ATTTACCGAATAAGTTCAAATAATTATGATTATTTGAACAATTATCTATTTC
126 ATTTACCGAACAAGTTCAAATAATTAAGACTATATGAACAATTATCTATTTC
* ** * *
89133 AAATTGTTATAATATTTTGTTTTGTCATAAAATAATTATTTTTGTTCGTATAAATTTATTCAAAA
1 AAATTGTTATAATATTTTGTTTTGTCATAAAACAATTATTTCAG-TCGTATAAACTTATTCAAAT
* * *
89198 AAAATAATACTAAATTAATAATATTCT-AGAAATTCATAAC-TAAGAGATTTAAAAAGTAAATTT
65 AAAATAATACTAATTTATTAATATT-TGAAAAATT-AT-ACGTAAGAGATTTAAAAA-TAAATTT
*** * * * * *
89261 ATTTGTTGAACCAGTTTAAATAGTTAAGACTATATGAATAATTATCTATTTT
126 ATTTACCGAACAAGTTCAAATAATTAAGACTATATGAACAATTATCTATTTC
* * * *
89313 AAATTGTTATGACCT-TTTTGTTTTGTTATAAAACAATTATTTCAG-CTTATACAAGCTTATTTG
1 AAATTGTTAT-A-ATATTTTGTTTTGTCATAAAACAATTATTTCAGTCGTATA-AA-CTTA-TTC
* * *
89376 TAATAAAATAAAACTAATTTATTTAATATTTGAAAAATTATACGTAAGAGATTTAAAAATAATTT
61 AAATAAAATAATACTAATTTA-TTAATATTTGAAAAATTATACGTAAGAGATTTAAAAATAAATT
** ** * *
89441 TATTTATTGCAATTAGTTCAAATAATCTATA-ACTATTTGAACAATTATAATATTTC
125 TATTTACCG-AACAAGTTCAAATAAT-TA-AGACTATATGAACAATTAT-CTATTTC
* ** *
89497 AATTTGTTAT-ACCTTTTATTTTGTCATAAAA
1 AAATTGTTATAATATTTTGTTTTGTCATAAAA
89528 ATAATACTAA
Statistics
Matches: 316, Mismatches: 56, Indels: 41
0.77 0.14 0.10
Matches are distributed among these distances:
175 3 0.01
176 34 0.11
177 45 0.14
179 11 0.03
180 67 0.21
181 45 0.14
182 66 0.21
183 30 0.09
184 15 0.05
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.43
Consensus pattern (177 bp):
AAATTGTTATAATATTTTGTTTTGTCATAAAACAATTATTTCAGTCGTATAAACTTATTCAAATA
AAATAATACTAATTTATTAATATTTGAAAAATTATACGTAAGAGATTTAAAAATAAATTTATTTA
CCGAACAAGTTCAAATAATTAAGACTATATGAACAATTATCTATTTC
Found at i:89804 original size:324 final size:325
Alignment explanation
Indices: 89197--89810 Score: 687
Period size: 325 Copynumber: 1.9 Consensus size: 325
89187 TTTATTCAAA
* *
89197 AAAAATAATACTAAATTAATAATATTCTAGAAATTCATAACTAAGAGATTTAAAAAGTAAATTTA
1 AAAAATAATACTAAATCAATAATATTCTAGAAATTAATAACTAAGAGA-TTAAAAAGTAAATTTA
**** * * * * * ***
89262 TTTGTTGAACCAGTTTAAATAGTTAAGACTATATGAATAATTATCTATTTTAAATTGTTATGACC
65 TTTCCCAAACCACTTCAAATAGTTAAGACTATATAAAAAATTATCTATTTCAAATCACTATGACC
* * * *
89327 TTTTTGTTTTGTTATAAAACAATTATTTCAGCTTATACAAGCTTATTTGTAATAAAATAAAACTA
130 ATTTTATTTTATTATAAAACAATTATTTCAGCTTATACAAGCTTATTAGTAATAAAATAAAACTA
* * * * * * *
89392 ATTTATTTAATATTTGAAAAATTATACGTAAGAGATTTAAAAATAATTTTATTTATTGCAATTAG
195 ATGTATTTAATATTTCAAAAATTATAAGTAAGAGATTAAAAAATAATTTTAGTTA-TGCAAGTAC
89457 TTCAAATAATCTATAACTATTTGAACAATTATAATATTTCAATTTGTTATACCTTTTATTTTGTC
259 TTCAAATAATCTATAACTATTTGAACAATTATAATATTTCAATTTGTTATACCTTTTATTTTGTC
89522 AT
324 AT
* * *
89524 AAAAATAATACT-AATCAATAATATT-TTGACAATTAATAACTAAGAGA-TAAAAATTAAATTTG
1 AAAAATAATACTAAATCAATAATATTCTAGA-AATTAATAACTAAGAGATTAAAAAGTAAATTTA
* *
89586 TTTCCCAAACCACTTCCAAATGGTTAAGTCTATATAAAAAATTATCTATTTCAAATACACTATGA
65 TTTCCCAAACCACTT-CAAATAGTTAAGACTATATAAAAAATTATCTATTTCAAAT-CACTATGA
* * * *
89651 -CATTTTATTTTATTGTAAAGCAATTTTTTTAGCTCT-TACTAA-CTTATTCAG-AATAAAAT-A
128 CCATTTTATTTTATTATAAAACAATTATTTCAGCT-TATAC-AAGCTTATT-AGTAATAAAATAA
*
89711 AATTAACTGTA-TTAATATTTCAAAAATTAATAAGTAAGAGATTAAAAATATAATTTT-GTTA-G
190 AACTAA-TGTATTTAATATTTCAAAAATT-ATAAGTAAGAGATTAAAAA-ATAATTTTAGTTATG
*
89773 CCGAAGTACTTTAAATAAT-TATGAA-TATTTGAACAATT
252 -C-AAGTACTTCAAATAATCTAT-AACTATTTGAACAATT
89811 TATCTATTTT
Statistics
Matches: 239, Mismatches: 36, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
323 1 0.00
324 62 0.26
325 119 0.50
326 45 0.19
327 12 0.05
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (325 bp):
AAAAATAATACTAAATCAATAATATTCTAGAAATTAATAACTAAGAGATTAAAAAGTAAATTTAT
TTCCCAAACCACTTCAAATAGTTAAGACTATATAAAAAATTATCTATTTCAAATCACTATGACCA
TTTTATTTTATTATAAAACAATTATTTCAGCTTATACAAGCTTATTAGTAATAAAATAAAACTAA
TGTATTTAATATTTCAAAAATTATAAGTAAGAGATTAAAAAATAATTTTAGTTATGCAAGTACTT
CAAATAATCTATAACTATTTGAACAATTATAATATTTCAATTTGTTATACCTTTTATTTTGTCAT
Found at i:90227 original size:20 final size:19
Alignment explanation
Indices: 90180--90224 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
90170 TTATGACCTT
*
90180 TTGTTTGGTCACAAAACAA
1 TTGTTTTGTCACAAAACAA
90199 TTGTTTTGTCACAAAACAA
1 TTGTTTTGTCACAAAACAA
90218 TTGTTTT
1 TTGTTTT
90225 TGTTCGTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (19 bp):
TTGTTTTGTCACAAAACAA
Found at i:90466 original size:120 final size:120
Alignment explanation
Indices: 90323--90543 Score: 331
Period size: 120 Copynumber: 1.8 Consensus size: 120
90313 TTTACTAAAC
*
90323 AAGTTCAAATAGTTATGGCTATTTGAACAATTATCTATTTCAAAT-AGCTATGACCTTATGTTTT
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-CTATGACCTTATGTTTT
*
90387 GTTATAAAACAATT-TTTTCTATTCATACAAA-CTTATTTCAAATCTATTTACCGAAT
65 GTCATAAAACAATTATTTT-TATTCATA-AAAGCTTATTTCAAATCTATTTACCGAAT
* * * *
90443 AAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTG
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACTATGACCTTATGTTTTG
*
90508 TCATAAAACAATTATTTTTGTTCATAAAAGCTTATT
66 TCATAAAACAATTATTTTTATTCATAAAAGCTTATT
90544 CAGATTAAAA
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
119 3 0.03
120 83 0.91
121 5 0.05
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (120 bp):
AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACTATGACCTTATGTTTTG
TCATAAAACAATTATTTTTATTCATAAAAGCTTATTTCAAATCTATTTACCGAAT
Found at i:90967 original size:180 final size:180
Alignment explanation
Indices: 90426--91634 Score: 1083
Period size: 180 Copynumber: 6.7 Consensus size: 180
90416 AACTTATTTC
* * * *
90426 AAATCTATTTACCGAATAAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCAT
1 AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * *
90491 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTA-TTCAGATTAAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAAT
* * *
90555 AATATTAATTTATTAATATT-TCCATAATTAATAAGTAAAAGATTTAAAAAAT
130 AATACTAATTTATTAATATTCT-AAAAATTAATAAGT-AAAGATTTAAAAAAT
* * * * * * * * * **
90607 AAATATGTTTATCAAATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGT
1 AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * ** ** * * * * * *
90672 TTTAATCTTTTGTTTCATTGTAAAA-AATTGTATCAATTTATATAGGCTTATTT-GAAATAAAAC
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCG-AATAAAAT
* *
90735 AATACTAACTTATTAATATTC-AAACAATTAATGAGTAAGAGATTTAAAAAAT
130 AATACTAATTTATTAATATTCTAAA-AATTAATAAGTAA-AGATTTAAAAAAT
* *
90787 AAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCATATCAT
1 AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * *
90852 TAAGACCTTTTATTTTGTCATAAAATAATTGTTTAC-GTTCATACAAGCTTATTTCGAATAAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTT-CTATTCATACAAGCTTATTTCGAATAAAAT
** * * *
90916 AATA-TAAATTTGCTAATATTCTAAGAATTAATAAGTAAAAATTTTAAAAAT
130 AATACT-AATTTATTAATATTCTAAAAATTAATAAGTAAAGATTTAAAAAAT
* * ** * * **
90967 AAATCTATTTTCTAAACATGTTCTAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGT
1 AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * *
91032 TATGACC-TTT-TTTTGTCATACACCAATTGTTTCTATTCATA-AAGGCTTATTTAGAATAAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAA-GCTTATTTCGAATAAAAT
* * *
91094 AATATTAATTTATTAA-ATTTCAAAAAATTAATAACTTAAAGATTTAAAAAAT
130 AATACTAATTTATTAATA-TTCTAAAAATTAATAA-GTAAAGATTTAAAAAAT
* * * * * * *
91146 AAATTTGTTTATCGAGCGAA-TTCAAATAGTTATGACTACTT-ATATAATTATTTTATTTCAAGT
1 AAATCTGTTTACCGAAC-AAGTTCAAATAGTTATGACTATTTGA-ACAATTA-TCTATTTCAAAT
* ** * * *
91209 TATTATGATATTTTGATTTTTTCATAAAACAATAGTTTCTATTCATACAAG--TATATTCAAAAT
63 CATTATGACCTTTTG-TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT-TTC-GAAT
* * ** *
91272 AAGATAATACTAATTTATTAATATTGTAAAAATTAATAAGTTGGAGATTTAAATAAT
125 AAAATAATACTAATTTATTAATATTCTAAAAATTAATAAG-TAAAGATTTAAAAAAT
* * * * * *
91329 AAATATGTTTACCGAACAAGTTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAATCAT
1 AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * ** *
91394 TAGGACATTTTGTTTTTTCATAAAATAATTGTTTTTATTCATACAAAATTA-TTCAAAATAAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAAT
* * * *
91458 AATACTATTTTATTAATATTTTGAAAATTAATAAG---AGATTTAAAAACT
130 AATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAGATTTAAAAAAT
* * * * * * ***
91506 ATATCTGTTTATCAAACCAGTTCAAATAGTTATGACTATTTGAATAGTTATCTATTTCAAATTGG
1 AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * *
91571 TATGATC-TTTGTTTTGTCATAAAATAATTGTTTCTATTCATATAAACTTA-TTCGAAGTAAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAA-TAAAAT
91634 A
130 A
91635 TTGCTAAACT
Statistics
Matches: 829, Mismatches: 168, Indels: 67
0.78 0.16 0.06
Matches are distributed among these distances:
175 2 0.00
176 49 0.06
177 69 0.08
178 69 0.08
179 57 0.07
180 225 0.27
181 209 0.25
182 30 0.04
183 115 0.14
184 4 0.00
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (180 bp):
AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAATAAAATA
ATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAGATTTAAAAAAT
Found at i:91236 original size:361 final size:350
Alignment explanation
Indices: 90426--91634 Score: 1101
Period size: 361 Copynumber: 3.4 Consensus size: 350
90416 AACTTATTTC
* * * * *
90426 AAATCTATTTACCGAATAAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCAT
1 AAATCTGTTTATCGAACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * *
90491 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATTCAGATTAAAATA
65 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATA
* * *
90556 ATATTAATTTATTAATATTTCCATAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCA
130 ATA-TAATTTATTAATATTT-AAAAATTAATAAGTAAAA-ATTTTAAAAATAAATATGTTT-TCA
* * * * * * * *
90621 AATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGTTTTAATCTTTTGTT
191 AACAAGTTCAAATAGTAATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACCTTTTTTT
* * * * * *
90686 TCATTGTAAAAAATTGTATCAATTTATATAGGCTTATTT-GAAATAAAACAATACTAACTTATT-
256 TCA---TAAAAAATTGTTTCTATTCATAAAGGCTTATTTAG-AATAAAATAATACTAATTTATTA
*
90749 AATATTCAAACAATTAATGAGTAAGAGATTTAAAAAAT
317 AAT-TTCAAAAAATTAAT-A-TAA-AGATTTAAAAAAT
* * *
90787 AAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCATATCAT
1 AAATCTGTTTATCGAACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * *
90852 TAAGACCTTTTATTTTGTCATAAAATAATTGTTTAC-GTTCATACAAGCTTATTTC-GAATAAAA
65 TATGACCTTTTGTTTTGTCATAAAACAATTGTTT-CTATTCATACAAGCTTA-TTCAGAATAAAA
** * * *
90915 TAATATAAATTTGCTAATATTCTAAGAATTAATAAGTAAAAATTTTAAAAATAAATCTATTTTCT
128 TAATAT-AATTTATTAATATT-TAAAAATTAATAAGTAAAAATTTTAAAAATAAATATGTTTTC-
* * * *
90980 AAACATGTTCTAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTTT
190 AAACAAGTTCAAATAGTAATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACCTTTTTT
** *
91045 TGTCATACACCAATTGTTTCTATTCATAAAGGCTTATTTAGAATAAAATAATATTAATTTATTAA
255 T-TCATA-AAAAATTGTTTCTATTCATAAAGGCTTATTTAGAATAAAATAATACTAATTTATTAA
91110 ATTTCAAAAAATTAATAACTTAAAGATTTAAAAAAT
318 ATTTCAAAAAATTAAT-A--TAAAGATTTAAAAAAT
* * * * * * *
91146 AAATTTGTTTATCGAGCGAATTCAAATAGTTATGACTACTT-ATATAATTATTTTATTTCAAGTT
1 AAATCTGTTTATCGAAC-AATTCAAATAGTTATGACTATTTGA-ACAATTA-TCTATTTCAAATC
** * * *
91210 ATTATGATATTTTGATTTTTTCATAAAACAATAGTTTCTATTCATACAAG-TATATTCAAAATAA
63 ATTATGACCTTTTG-TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCT-TATTCAGAATAA
* ** *
91274 GATAATACTAATTTATTAATATTGTAAAAATTAATAAGTTGGAGA-TTTAAATAATAAATATGTT
126 AATAATA-TAATTTATTAATATT-TAAAAATTAATAAG-TAAAAATTTTAAA-AATAAATATGTT
* * * * * * ** * *
91338 TACCGAACAAGTTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAATCATTAGGACATT
187 T-TCAAACAAGTTCAAATAGTAATGACTATTTAAACAATTATCTATTTCAAATTGTTATGAC--C
* ** * * *
91403 TTGTTTTTTCATAAAATAATTGTTTTTATTCATACAA-AATTATTCAAAATAAAATAATACTATT
249 TT-TTTTTTCATAAAA-AATTGTTTCTATTCATA-AAGGCTTATTTAGAATAAAATAATACTAAT
** * *
91467 TTATTAATATTT-TGAAAATTAATA-AGAGATTTAAAAACT
311 TTATTAA-ATTTCAAAAAATTAATATAAAGATTTAAAAAAT
* * * * * ***
91506 ATATCTGTTTATCAAACCAGTTCAAATAGTTATGACTATTTGAATAGTTATCTATTTCAAATTGG
1 AAATCTGTTTATCGAA-CAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * *
91571 TATGATC-TTTGTTTTGTCATAAAATAATTGTTTCTATTCATATAAACTTATTC-GAAGTAAAAT
65 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAA-TAAAAT
91634 A
129 A
91635 TTGCTAAACT
Statistics
Matches: 701, Mismatches: 116, Indels: 66
0.79 0.13 0.07
Matches are distributed among these distances:
356 2 0.00
357 41 0.06
358 8 0.01
359 129 0.18
360 158 0.23
361 223 0.32
362 66 0.09
363 3 0.00
364 60 0.09
365 11 0.02
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (350 bp):
AAATCTGTTTATCGAACAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
ATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATAA
TATAATTTATTAATATTTAAAAATTAATAAGTAAAAATTTTAAAAATAAATATGTTTTCAAACAA
GTTCAAATAGTAATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACCTTTTTTTTCATA
AAAAATTGTTTCTATTCATAAAGGCTTATTTAGAATAAAATAATACTAATTTATTAAATTTCAAA
AAATTAATATAAAGATTTAAAAAAT
Found at i:91562 original size:16 final size:17
Alignment explanation
Indices: 91530--91562 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
91520 AACCAGTTCA
91530 AATAGTTATGACTATTTG
1 AATAGTTAT-ACTATTTG
91548 AATAGTTAT-CTATTT
1 AATAGTTATACTATTT
91563 CAAATTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (17 bp):
AATAGTTATACTATTTG
Found at i:91741 original size:14 final size:14
Alignment explanation
Indices: 91700--91733 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
91690 TTGAGTTTAA
*
91700 TAATTATTA-CTAT
1 TAATTATAATCTAT
91713 TAATTATAATCTAT
1 TAATTATAATCTAT
91727 TAATTAT
1 TAATTAT
91734 CAATTATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATTATAATCTAT
Found at i:92082 original size:10 final size:10
Alignment explanation
Indices: 92062--92092 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
92052 ATATTGACTC
92062 AATATATTATA
1 AATA-ATTATA
92073 AATAATTATA
1 AATAATTATA
92083 AATAATTATA
1 AATAATTATA
92093 TAACTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 16 0.80
11 4 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AATAATTATA
Found at i:92290 original size:17 final size:17
Alignment explanation
Indices: 92264--92314 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
92254 ATTTACCAAT
*
92264 TTATACTTATAATATAA
1 TTATATTTATAATATAA
92281 TTATATTTATAAT-TAA
1 TTATATTTATAATATAA
* *
92297 ATAT-TATTATTATATAA
1 TTATAT-TTATAATATAA
92314 T
1 T
92315 AAAATAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.04
16 12 0.43
17 15 0.54
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATATTTATAATATAA
Found at i:92314 original size:21 final size:19
Alignment explanation
Indices: 92280--92320 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
92270 TTATAATATA
*
92280 ATTATATTTATAATTAAAT
1 ATTATATTTATAATAAAAT
92299 ATTATTATTATATAATAAAAT
1 ATTA-TATT-TATAATAAAAT
92320 A
1 A
92321 ATTGAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 4 0.21
21 11 0.58
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTATATTTATAATAAAAT
Found at i:92892 original size:20 final size:20
Alignment explanation
Indices: 92867--92923 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 20
92857 TGCTAACAAT
92867 TTATATATAATATAATATAA
1 TTATATATAATATAATATAA
92887 TTATATAT--TATAAT-TAA
1 TTATATATAATATAATATAA
* *
92904 TATTTATTTAATATTAATAT
1 T-TATATATAATA-TAATAT
92924 TAATAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 4 0.13
18 11 0.37
20 10 0.33
21 4 0.13
22 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATATATAATATAATATAA
Found at i:92916 original size:11 final size:12
Alignment explanation
Indices: 92886--92940 Score: 51
Period size: 13 Copynumber: 4.5 Consensus size: 12
92876 ATATAATATA
92886 ATTATATATT-AT
1 ATTA-ATATTAAT
*
92898 AATTAATATTTAT
1 -ATTAATATTAAT
92911 -TTAATATTAAT
1 ATTAATATTAAT
92922 ATTAATAATTAAT
1 ATTAAT-ATTAAT
*
92935 TTTAAT
1 ATTAAT
92941 TAATTTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
11 10 0.27
12 10 0.27
13 17 0.46
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTAATATTAAT
Found at i:92934 original size:13 final size:12
Alignment explanation
Indices: 92882--92928 Score: 53
Period size: 11 Copynumber: 3.9 Consensus size: 12
92872 TATAATATAA
92882 TATAATTATATAT
1 TATAATTA-ATAT
92895 TATAATTAATAT
1 TATAATTAATAT
*
92907 T-TATTTAATAT
1 TATAATTAATAT
92918 TA-ATATTAATA
1 TATA-ATTAATA
92929 ATTAATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 11 0.37
12 11 0.37
13 8 0.27
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATAATTAATAT
Found at i:92941 original size:6 final size:6
Alignment explanation
Indices: 92886--92940 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
92876 ATATAATATA
*
92886 ATTATAT ATT-AT AATTAAT ATTTAT -TTAAT ATTAAT ATTAAT AATTAAT
1 ATTA-AT ATTAAT -ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT -ATTAAT
*
92935 TTTAAT
1 ATTAAT
92941 TAATTTATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.15
6 24 0.59
7 11 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
ATTAAT
Found at i:92941 original size:40 final size:44
Alignment explanation
Indices: 92865--92944 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
92855 TATGCTAACA
92865 ATTTATATATAATATAATATAATTATATATTATAATTAATATTT
1 ATTTATATATAATATAATATAATTATATATTATAATTAATATTT
*
92909 ATTTA-ATATTAATATTA-ATAATTA-AT-TT-TAATTAAT
1 ATTTATATA-TAATATAATATAATTATATATTATAATTAAT
92945 TTATTAGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
40 8 0.24
41 2 0.06
42 2 0.06
43 10 0.29
44 12 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (44 bp):
ATTTATATATAATATAATATAATTATATATTATAATTAATATTT
Found at i:92942 original size:23 final size:23
Alignment explanation
Indices: 92864--92944 Score: 66
Period size: 23 Copynumber: 3.6 Consensus size: 23
92854 ATATGCTAAC
92864 AATTT-ATATATAATA-TAATA-T
1 AATTTAATAT-TAATATTAATATT
92885 AA-TTATATATT-ATAATTAATATT
1 AATTTA-ATATTAAT-ATTAATATT
*
92908 TATTTAATATTAATATTAATAATT
1 AATTTAATATTAATATTAAT-ATT
*
92932 AATTTTA-ATTAAT
1 AATTTAATATTAAT
92945 TTATTAGTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
20 4 0.08
21 4 0.08
22 9 0.18
23 19 0.39
24 13 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTTAATATTAATATTAATATT
Found at i:93086 original size:41 final size:39
Alignment explanation
Indices: 93015--93107 Score: 100
Period size: 41 Copynumber: 2.4 Consensus size: 39
93005 TAAAAATTAT
*
93015 ATATTA-ATATTA-TATATTTAAATAATTAATAAAACAA
1 ATATTATATATTATTAGATTTAAATAATTAATAAAACAA
* * **
93052 ATTTTATATATTATTAGATTTATAATTATATAATAAAAGTA
1 ATATTATATATTATTAGATTTA-AATAAT-TAATAAAACAA
*
93093 ATATTATTTATTATT
1 ATATTATATATTATT
93108 TATAGTTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
37 5 0.11
38 6 0.13
39 7 0.16
40 5 0.11
41 22 0.49
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (39 bp):
ATATTATATATTATTAGATTTAAATAATTAATAAAACAA
Found at i:93197 original size:18 final size:18
Alignment explanation
Indices: 93148--93199 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
93138 TTAAGTTGTT
93148 TTATAA-AATTATTATATA
1 TTATAATAATT-TTATATA
* * *
93166 -CATTATAATGTTATATA
1 TTATAATAATTTTATATA
93183 TTATAATAATTTTATAT
1 TTATAATAATTTTATAT
93200 TATGTTAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TTATAATAATTTTATATA
Found at i:93329 original size:11 final size:12
Alignment explanation
Indices: 93314--93346 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
93304 ATTATATTTG
93314 AATTAATATACT
1 AATTAATATACT
93326 -ATTAATATTACT
1 AATTAATA-TACT
93338 AATTAATAT
1 AATTAATAT
93347 TAAGTCTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.37
12 5 0.26
13 7 0.37
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (12 bp):
AATTAATATACT
Found at i:93344 original size:13 final size:13
Alignment explanation
Indices: 93314--93348 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
93304 ATTATATTTG
93314 AATTAATA-TACT
1 AATTAATATTACT
93326 -ATTAATATTACT
1 AATTAATATTACT
93338 AATTAATATTA
1 AATTAATATTA
93349 AGTCTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 4 0.19
13 10 0.48
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTAATATTACT
Found at i:94282 original size:59 final size:58
Alignment explanation
Indices: 94129--94446 Score: 392
Period size: 58 Copynumber: 5.4 Consensus size: 58
94119 TTTTGTGCAG
* * * * * **
94129 GGAAAATTGATACTTTCAATTTTTCCCCAAAATATT--TTTTAGAAATTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-ATTCATTTTTGAAAATTTATTTTTAA
* *
94186 GAAAAATTGATACTCTCAACTTTTCCTCAAAAATTCATTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAATTTATTTTTAA
94244 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTCATTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TTCATTTTTGAAAATTTATTTTTAA
* * * **
94303 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTAGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTCA-TTTTT-GAAAATTTATTTTTAA
* * *
94361 GGAAACTTGATACTTTCAACTTTTCCTCAAAAACTCTTTTTTGAAAATTTATTTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAATTTA--TTTTTAA
*
94421 GGAAAATTGCTACTTTCAACTTTTCC
1 GGAAAATTGATACTTTCAACTTTTCC
94447 AAAAAAGTAT
Statistics
Matches: 227, Mismatches: 25, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
56 4 0.02
57 34 0.15
58 98 0.43
59 63 0.28
60 28 0.12
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.43
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAATTTATTTTTAA
Found at i:94336 original size:117 final size:116
Alignment explanation
Indices: 94129--94461 Score: 399
Period size: 117 Copynumber: 2.9 Consensus size: 116
94119 TTTTGTGCAG
* * * * * ** *
94129 GGAAAATTGATACTTTCAATTTTTCCCCAAAATA-TT-TTTTAGAAATTTTAATTTCGAGAAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-ACTTCTTTTTGAAAATTTATTTTTAAGGAAAA
* * * *
94192 TTGATACTCTCAACTTTTCCTCAAAAAT-TCATTTTT-GAAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCCCAAAAATAT--TTTTTAGAAAATTTAATTTCAA
94244 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTCATTTTTGAAAATTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTC-TTTTTGAAAATTTATTTTTAAGGAAAA
* *
94309 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAACTTTAATTTCGA
65 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAAATTTAATTTCAA
*
94361 GGAAACTTGATACTTTCAACTTTTCCTCAAAAAC-TCTTTTTTGAAAATTTATTTTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTC-TTTTTGAAAATTTA--TTTTTAAGGAA
* *
94425 AATTGCTACTTTCAACTTTT-CCAAAAAAGTATTTTTT
63 AATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTT
94462 TTGGATTTTA
Statistics
Matches: 192, Mismatches: 18, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
114 1 0.01
115 32 0.17
116 21 0.11
117 99 0.52
118 39 0.20
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTCTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATATTTTTTAGAAAATTTAATTTCAA
Found at i:94487 original size:5 final size:5
Alignment explanation
Indices: 94479--94563 Score: 54
Period size: 5 Copynumber: 16.6 Consensus size: 5
94469 TTATTTAAAG
*
94479 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AATAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AA-AAT
*
94523 AAAA- AAAAGT AAAACA AAAAT AAAAAT AAAAT AAAGAT AAA
1 AAAAT AAAA-T AAAA-T AAAAT -AAAAT AAAAT AAA-AT AAA
94564 GAATATTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.05
4 8 0.12
5 31 0.47
6 20 0.30
7 4 0.06
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:94512 original size:25 final size:22
Alignment explanation
Indices: 94479--94563 Score: 75
Period size: 23 Copynumber: 3.6 Consensus size: 22
94469 TTATTTAAAG
94479 AAAA-TAAAATAATAAAACAAAAT
1 AAAAGTAAAATAA-AAAA-AAAAT
*
94502 AAAAGTGAAAATAAAAAATAAAAAA
1 AAAAGT-AAAAT-AAAAA-AAAAAT
*
94527 AAAAGTAAAACAAAAATAAAAAT
1 AAAAGTAAAATAAAAA-AAAAAT
94550 AAAA-TAAAGATAAA
1 AAAAGTAAA-ATAAA
94564 GAATATTAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.08
23 23 0.43
24 5 0.09
25 18 0.34
26 3 0.06
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (22 bp):
AAAAGTAAAATAAAAAAAAAAT
Found at i:94518 original size:23 final size:24
Alignment explanation
Indices: 94497--94557 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
94487 ATAATAAAAC
*
94497 AAAATAAAAGTGAAAATAAAAAATA
1 AAAATAAAAGT-AAAACAAAAAATA
*
94522 AAAAAAAAAGTAAAAC-AAAAATA
1 AAAATAAAAGTAAAACAAAAAATA
94545 AAAATAAAA-TAAA
1 AAAATAAAAGTAAA
94558 GATAAAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.12
23 15 0.45
24 4 0.12
25 10 0.30
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (24 bp):
AAAATAAAAGTAAAACAAAAAATA
Found at i:94524 original size:6 final size:6
Alignment explanation
Indices: 94479--94568 Score: 64
Period size: 6 Copynumber: 15.0 Consensus size: 6
94469 TTATTTAAAG
* *
94479 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTG AAAATAA AAAATA AAAA-A
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAAT-A AAAATA AAAATA
* *
94527 AAAAGT- AAAACA AAAATA AAAAT- AAAATA AAGATA AAGAATA
1 AAAA-TA AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA
94569 TTAAATAAAC
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
5 15 0.22
6 39 0.58
7 13 0.19
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:94543 original size:30 final size:30
Alignment explanation
Indices: 94479--94563 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
94469 TTATTTAAAG
* **
94479 AAAATAAAATAAT-AAAACAAAATAAAAGTG
1 AAAATAAAA-AATAAAAAAAAAATAAAAGCA
94509 AAAATAAAAAATAAAAAAAAAAGTAAAA-CA
1 AAAATAAAAAATAAAAAAAAAA-TAAAAGCA
* *
94539 AAAAT-AAAAATAAAATAAAGATAAA
1 AAAATAAAAAATAAAAAAAAAATAAA
94564 GAATATTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
28 4 0.08
29 17 0.35
30 22 0.46
31 5 0.10
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (30 bp):
AAAATAAAAAATAAAAAAAAAATAAAAGCA
Found at i:95276 original size:6 final size:6
Alignment explanation
Indices: 95265--95349 Score: 52
Period size: 6 Copynumber: 14.2 Consensus size: 6
95255 AATACCTAAG
* * * *
95265 ATAAAA AT-AAA AGAAAT ATATAT ATAAAA A-AAACA ATAATAA TAATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAA-A ATAA-AA --ATAAAA
* *
95315 ATAAAA AT-AAA ATAGAA AT-AGA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA A
95350 AATGAAAATA
Statistics
Matches: 61, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
5 15 0.25
6 36 0.59
7 3 0.05
8 3 0.05
9 4 0.07
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:95291 original size:23 final size:21
Alignment explanation
Indices: 95265--95362 Score: 80
Period size: 22 Copynumber: 4.6 Consensus size: 21
95255 AATACCTAAG
95265 ATAAAAATAAAAGA-AATATATA
1 ATAAAAATAAAA-ATAATA-ATA
95287 TATAAAAA-AAACAATAATAATA
1 -ATAAAAATAAA-AATAATAATA
95309 ATAAAAATAAAAATAA-AATA
1 ATAAAAATAAAAATAATAATA
*
95329 GA-AATAGAATAAAAATAA-AAAA
1 -ATAA-A-AATAAAAATAATAATA
*
95351 ATGAAAATAAAA
1 ATAAAAATAAAA
95363 TAAAGAAAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 17
0.78 0.02 0.20
Matches are distributed among these distances:
20 13 0.20
21 16 0.24
22 25 0.38
23 12 0.18
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (21 bp):
ATAAAAATAAAAATAATAATA
Found at i:95328 original size:17 final size:17
Alignment explanation
Indices: 95265--95366 Score: 66
Period size: 17 Copynumber: 5.9 Consensus size: 17
95255 AATACCTAAG
* *
95265 ATAAAAATAAAAGAAAT
1 ATAAAAATAAAATAAAA
* *
95282 ATATATAT-AAA-AAAA
1 ATAAAAATAAAATAAAA
* *
95297 ACAATAATAATAATAAAA
1 ATAAAAATAA-AATAAAA
*
95315 ATAAAAATAAAATAGAA
1 ATAAAAATAAAATAAAA
*
95332 ATAGAATAA-AAATAAAAAA
1 ATA-AA-AATAAA-ATAAAA
*
95351 ATGAAAATAAAATAAA
1 ATAAAAATAAAATAAA
95367 GAAAGAAAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
15 7 0.11
16 4 0.06
17 23 0.36
18 22 0.34
19 8 0.12
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.20
Consensus pattern (17 bp):
ATAAAAATAAAATAAAA
Found at i:95357 original size:6 final size:5
Alignment explanation
Indices: 95268--95366 Score: 60
Period size: 5 Copynumber: 18.6 Consensus size: 5
95258 ACCTAAGATA
* * *
95268 AAAAT AAAAG AAATAT ATATAT AAAA- AAAAC AATAAT AATAAT AAAAAT
1 AAAAT AAAAT AAA-AT A-AAAT AAAAT AAAAT AA-AAT AA-AAT -AAAAT
*
95317 AAAAAT AAAAT AGAAAT AGAAT AAAA- ATAAA- AAAAT GAAAAT AAAAT
1 -AAAAT AAAAT A-AAAT AAAAT AAAAT A-AAAT AAAAT -AAAAT AAAAT
95364 AAA
1 AAA
95367 GAAAGAAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
4 8 0.10
5 35 0.45
6 32 0.41
7 3 0.04
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:95362 original size:11 final size:10
Alignment explanation
Indices: 95268--95366 Score: 60
Period size: 11 Copynumber: 9.3 Consensus size: 10
95258 ACCTAAGATA
*
95268 AAAATAAAAG
1 AAAATAAAAT
*
95278 AAATATATATAT
1 AAA-ATA-AAAT
*
95290 AAAA-AAAAC
1 AAAATAAAAT
95299 AATAATAATAAT
1 AA-AATAA-AAT
95311 AAAAATAAAAAT
1 -AAAAT-AAAAT
95323 AAAATAGAAAT
1 AAAATA-AAAT
*
95334 AGAATAAAA-
1 AAAATAAAAT
95343 ATAAA-AAAAT
1 A-AAATAAAAT
95353 GAAAATAAAAT
1 -AAAATAAAAT
95364 AAA
1 AAA
95367 GAAAGAAAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 24
0.69 0.07 0.24
Matches are distributed among these distances:
9 9 0.13
10 18 0.26
11 26 0.37
12 13 0.19
13 4 0.06
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:95379 original size:36 final size:37
Alignment explanation
Indices: 95305--95379 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 37
95295 AAACAATAAT
* *
95305 AATAATAAAAATAAAAATAAAATAGAAATAGAATAAA
1 AATAATAAAAATAAAAATAAAATAGAAAAAGAAAAAA
*
95342 AATAA-AAAAATGAAAATAAAATA-AAGAAAGAAAAAA
1 AATAATAAAAATAAAAATAAAATAGAA-AAAGAAAAAA
95378 AA
1 AA
95380 AGAACATAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 2 0.06
36 27 0.79
37 5 0.15
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.15
Consensus pattern (37 bp):
AATAATAAAAATAAAAATAAAATAGAAAAAGAAAAAA
Found at i:95381 original size:14 final size:14
Alignment explanation
Indices: 95340--95383 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
95330 AAATAGAATA
*
95340 AAAATAAAAAAATG
1 AAAATAAAAAAAAG
*
95354 AAAATAAAATAAAG
1 AAAATAAAAAAAAG
95368 AAAGA-AAAAAAAAG
1 AAA-ATAAAAAAAAG
95382 AA
1 AA
95384 CATAGACTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 25 0.96
15 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (14 bp):
AAAATAAAAAAAAG
Found at i:95551 original size:14 final size:14
Alignment explanation
Indices: 95534--95560 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95524 CCTTTTTACT
95534 TTTTGTTTTTTTTG
1 TTTTGTTTTTTTTG
95548 TTTTGTTTTTTTT
1 TTTTGTTTTTTTT
95561 TTATTTTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (14 bp):
TTTTGTTTTTTTTG
Found at i:95669 original size:41 final size:42
Alignment explanation
Indices: 95576--95748 Score: 215
Period size: 42 Copynumber: 4.1 Consensus size: 42
95566 TTTGATCAAA
* *
95576 GCTCCTCTAAACAGAGGCCCAACGACTTTGAGAAACATAAATG
1 GCTCCTCTAAACAGAGGCTCAACGACTTTG-GAAAAATAAATG
*
95619 GCTCCTCT-AATAGAGGCTCAACGACTTTGGAAAAATAAATG
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATG
* * *
95660 GCTCCTCTAATCAGAGGCTCAACAACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATG
** * * * *
95702 GCTTATCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATG
95743 GCTCCT
1 GCTCCT
95749 TGACAATCAT
Statistics
Matches: 113, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 32 0.28
42 73 0.65
43 8 0.07
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATG
Found at i:96631 original size:178 final size:178
Alignment explanation
Indices: 96052--96876 Score: 587
Period size: 178 Copynumber: 4.6 Consensus size: 178
96042 ATTCCTATTC
* * * * * **
96052 AATTAGTATTAATTTCTTTCAAATAAGTTTGTATGAACTGAAAAAATTATTTTATGATTAAACAA
1 AATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAAAAATTATTTTATGACAAAACAA
* * * * * *
96117 AAGG-TCAAAATGATTTGAAATAGATAATAT-TCTAATAATCTTAACTATTT-GAATTGATTGGC
66 AAGGATCAAAATGATTTGAAATAGATAAT-TGTTTAATAGTCTTAACTATTTAAAATAG-TTTGT
* * * *
96179 AAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTA
129 AAACATATTTATTTTTTAAATCTCTTGC-T-TTAATTTTTGAAATATTAATA
** * ** * *
96231 AATTAGTATTATTTT-TATCTGAATTAGCTTATATGATA-AAAAAAAATTGTTTAATGACAAAAC
1 AATTAGTATTATTTTAT-TCCAAATAAGCTTATATGA-ACTGAAAAAATTATTTTATGACAAAAC
* * * * * * *
96294 -AAA-GATCATAACGATTTGAGATTA-ATATTTGTTCGAATAGT-TATAACTA-TTAGAACTACT
64 AAAAGGATCAAAATGATTTGA-AATAGATAATTGTT-TAATAGTCT-TAACTATTTA-AAATAGT
* * * *
96354 TTG-AAAAATAGCTTTAGTTTTTAAATCTCTTGGTTAATAATTTTTGAAATATTGATA
125 TTGTAAACATA--TTTATTTTTTAAATCTCTTGCTT--TAATTTTTGAAATATTAATA
* * * * * * * *
96411 AAGTAATATTATTTTATTTCAGATAAGTTTTTATTAACTGAAACAATTATTTTATGACAAAACAA
1 AATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAAAAATTATTTTATGACAAAACAA
* * * * * *
96476 AATG-TCAAAATAATTTTAAATAGATAATTGTTTAAATAGT-TATATC-ATTTAAAATTGTTCAG
66 AAGGATCAAAATGATTTGAAATAGATAATTGTTT-AATAGTCT-TAACTATTTAAAATAGTT-TG
*
96538 TAAACATATTTATTTTTTAAATCTCTTGCTTTAATTTTTCG-AATGTTAATA
128 TAAACATATTTATTTTTTAAATCTCTTGCTTTAATTTTT-GAAATATTAATA
* *
96589 AATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACTGAAATAATTATTTTATGACTAAAA-A
1 AATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAAAAATTATTTTATGAC-AAAACA
* * * * * * *
96653 AAAGGAT-AGAATGATTTAAAATAGATAATTATTCTGATAGTGTTAACTATTTGAACTAGTTTTG
65 AAAGGATCAAAATGATTTGAAATAGATAATTGTT-TAATAGTCTTAACTATTTAAAATAG-TTTG
* *
96717 CT-AACATATTTATTTTTTAAATCTCTT--ATTAATTTTTGAAATATTATTA
128 -TAAACATATTTATTTTTTAAATCTCTTGCTTTAATTTTTGAAATATTAATA
* * * * * ** * * * *
96766 AGTCAGTATCATTTTAATCCGAATAAGCTTATATGAAAGGAAATAATTGTTGTATGACAAAA-TA
1 AATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAAAAATTATTTTATGACAAAACAA
** ** * *
96830 AA-GATCATTATGATTTGGGATAGATAATTGTTCAAATAGTCATAACT
66 AAGGATCAAAATGATTTGAAATAGATAATTGTT-TAATAGTCTTAACT
96877 TATATTAATA
Statistics
Matches: 506, Mismatches: 108, Indels: 67
0.74 0.16 0.10
Matches are distributed among these distances:
175 3 0.01
176 39 0.08
177 67 0.13
178 131 0.26
179 107 0.21
180 115 0.23
181 37 0.07
182 7 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
AATTAGTATTATTTTATTCCAAATAAGCTTATATGAACTGAAAAAATTATTTTATGACAAAACAA
AAGGATCAAAATGATTTGAAATAGATAATTGTTTAATAGTCTTAACTATTTAAAATAGTTTGTAA
ACATATTTATTTTTTAAATCTCTTGCTTTAATTTTTGAAATATTAATA
Found at i:96736 original size:359 final size:358
Alignment explanation
Indices: 96058--96743 Score: 750
Period size: 359 Copynumber: 1.9 Consensus size: 358
96048 ATTCAATTAG
* **
96058 TATTAATTTCTTTCAAATAAGTTTGTATGAACTGAAAAAATTATTTTATGATTAAACAAAAGGTC
1 TATTAATTTATTTCAAATAAGTTTGTATGAACTGAAAAAATTATTTTATGACAAAACAAAAGGTC
* * *
96123 AAAATGATTTGAAATAGATAATATTCTAATAATCTTAACTATTTGAATTGATTGGCAAACACATT
66 AAAATAATTTGAAATAGATAATATTCTAATAATCTTAACTATTTAAATTGATTAGCAAACACATT
* **
96188 TATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTTATCTGA
131 TATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTATCCAA
* * * * * *
96253 ATTAGCTTATATGATAAAAAAAAATTGTTTAATGACAAAACAAAGATCATAACGATTTGAGATTA
196 ATAAGCTTATATGATAAAAAAAAATTATTTAATGACAAAAAAAAGATCAGAACGATTTGAAAATA
* *
96318 ATATTTGTTCGAATAGTTATAACTATTAGAACTACTTTGAAAAATAGCTTTAGTTTTTAAATCTC
261 ATAATTATTCGAATAGTTATAACTATTAGAACTACTTTGAAAAATA-CTTTAGTTTTTAAATCTC
96383 TTGGTTAATAATTTTTGAAATATTGATAAAGTAA
325 TTGGTTAATAATTTTTGAAATATTGATAAAGTAA
* * * * * *
96417 TATTATTTTATTTCAGATAAGTTTTTATTAACTGAAACAATTATTTTATGACAAAACAAAATGTC
1 TATTAATTTATTTCAAATAAGTTTGTATGAACTGAAAAAATTATTTTATGACAAAACAAAAGGTC
* * * * *
96482 AAAATAATTTTAAATAGATAAT-TGTTTAAATAGT-TATATC-ATTTAAAATTG-TTCAGTAAAC
66 AAAATAATTTGAAATAGATAATAT-TCT-AATAATCT-TAACTATTT-AAATTGATT-AGCAAAC
* * ** *
96543 ATATTTATTTTTTAAATCTCTTGC-T-TTAATTTTTCGAATGTTAATAAATTAGTATTA-TTTTA
126 ACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTA
* ** * * *
96605 TTCCAAATAAGCTTGTATGA-ACTGAAATAATTATTTTATGACTAAAAAAAAGGAT-AGAATGAT
191 -TCCAAATAAGCTTATATGATA-AAAAAAAATTATTTAATGAC-AAAAAAAA-GATCAGAACGAT
* * * *
96668 TT-AAAATAGATAATTATTCTG-ATAGTGT-TAACTATTTGAACTAGTTTTGCTAACATA-TTTA
252 TTGAAAATA-ATAATTATTC-GAATAGT-TATAACTATTAGAACTA-CTTTG-AAAAATACTTTA
*
96729 TTTTTTAAATCTCTT
312 GTTTTTAAATCTCTT
96744 ATTAATTTTT
Statistics
Matches: 269, Mismatches: 44, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
357 6 0.02
358 63 0.23
359 146 0.54
360 49 0.18
361 5 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (358 bp):
TATTAATTTATTTCAAATAAGTTTGTATGAACTGAAAAAATTATTTTATGACAAAACAAAAGGTC
AAAATAATTTGAAATAGATAATATTCTAATAATCTTAACTATTTAAATTGATTAGCAAACACATT
TATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTATCCAA
ATAAGCTTATATGATAAAAAAAAATTATTTAATGACAAAAAAAAGATCAGAACGATTTGAAAATA
ATAATTATTCGAATAGTTATAACTATTAGAACTACTTTGAAAAATACTTTAGTTTTTAAATCTCT
TGGTTAATAATTTTTGAAATATTGATAAAGTAA
Found at i:97039 original size:26 final size:26
Alignment explanation
Indices: 97006--97073 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 26
96996 ATTATTCAAT
*
97006 TTAT-ATATATATTATAATTATAATA
1 TTATAATATATATTATAATTAAAATA
*
97031 TTATAATAT-TATTTATTATTAAAATA
1 TTATAATATATA-TTATAATTAAAATA
97057 TT-TAA-ATA-ATTAATAAT
1 TTATAATATATATT-ATAAT
97074 ATTTTAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
23 2 0.06
24 7 0.19
25 9 0.25
26 18 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TTATAATATATATTATAATTAAAATA
Found at i:97133 original size:58 final size:58
Alignment explanation
Indices: 97014--97135 Score: 135
Period size: 58 Copynumber: 2.1 Consensus size: 58
97004 ATTTATATAT
* *
97014 ATATTATAATTATAATATTATAATATTATTTATTATTAAAATATTTAAATAATTAATA
1 ATATTATAATTATAATATTATAATATTATTTAATATTAAAATATATAAATAATTAATA
* * *
97072 ATATTTTAATTAT-ATATTAATAA-ATTAGTTTAAATATTAATATATAT-CAT-ATTAATAA
1 ATATTATAATTATAATATT-ATAATATTA-TTT-AATATTAAAATATATAAATAATTAAT-A
97130 ATATTA
1 ATATTA
97136 ATACAAGCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
57 15 0.28
58 27 0.50
59 12 0.22
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (58 bp):
ATATTATAATTATAATATTATAATATTATTTAATATTAAAATATATAAATAATTAATA
Found at i:97335 original size:25 final size:27
Alignment explanation
Indices: 97288--97350 Score: 85
Period size: 25 Copynumber: 2.4 Consensus size: 27
97278 TACTAATTAA
*
97288 TAATAATATGAATTATTATATTAATATT
1 TAATAATAT-AATTATTAGATTAATATT
97316 TAATAATATAA-TATT-GATTAATATT
1 TAATAATATAATTATTAGATTAATATT
*
97341 TAAAAATATA
1 TAATAATATA
97351 TTAATTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 18 0.55
26 4 0.12
27 2 0.06
28 9 0.27
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (27 bp):
TAATAATATAATTATTAGATTAATATT
Found at i:97631 original size:21 final size:21
Alignment explanation
Indices: 97607--97646 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
97597 ATTATAATAT
97607 TATTAA-TATAAATTATTTTCA
1 TATTAATTA-AAATTATTTTCA
97628 TATTAATTAAAATTATTTT
1 TATTAATTAAAATTATTTT
97647 AATTTATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTAATTAAAATTATTTTCA
Found at i:98495 original size:14 final size:14
Alignment explanation
Indices: 98458--98495 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
98448 ATATCTTATT
*
98458 ATTTATTATTAATA
1 ATTTATTAATAATA
98472 ATGTTA-TAATAATA
1 AT-TTATTAATAATA
98486 ATTTATTAAT
1 ATTTATTAAT
98496 TTATAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 3 0.14
14 15 0.71
15 3 0.14
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
ATTTATTAATAATA
Found at i:98589 original size:18 final size:18
Alignment explanation
Indices: 98566--98600 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
98556 AATATTAACA
98566 TATAATATTAATATTATG
1 TATAATATTAATATTATG
*
98584 TATAATATTCATATTAT
1 TATAATATTAATATTAT
98601 ATTGAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TATAATATTAATATTATG
Found at i:100425 original size:21 final size:23
Alignment explanation
Indices: 100398--100483 Score: 72
Period size: 24 Copynumber: 3.7 Consensus size: 23
100388 TTAGAACTAA
*
100398 TTATAATACTGATTA-ACATTAG
1 TTATAATACTAATTATACATTAG
*
100420 -TATAATATTAATTATTACATTAG
1 TTATAATACTAATTA-TACATTAG
* *
100443 TTATAATAATAAATATTA-ATTA-
1 TTATAATACTAATTA-TACATTAG
100465 TTATAATACTCATATTATA
1 TTATAATACT-A-ATTATA
100484 TCTATATAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
21 12 0.23
22 9 0.17
23 14 0.26
24 18 0.34
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (23 bp):
TTATAATACTAATTATACATTAG
Found at i:100699 original size:19 final size:20
Alignment explanation
Indices: 100648--100715 Score: 73
Period size: 22 Copynumber: 3.2 Consensus size: 20
100638 TAATTATTGC
100648 AATATTATTTATAAATATAAAT
1 AATATTATTTAT-AATA-AAAT
* * *
100670 TATAATAATTATAATAAAAT
1 AATATTATTTATAATAAAAT
100690 AATATTATTATACTAATAAAAT
1 AATATTATT-TA-TAATAAAAT
100712 AATA
1 AATA
100716 AATATTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 10 0.26
21 6 0.16
22 22 0.58
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (20 bp):
AATATTATTTATAATAAAAT
Found at i:100708 original size:25 final size:25
Alignment explanation
Indices: 100658--100724 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
100648 AATATTATTT
*
100658 ATAAATATAA-ATTATAATAATTATA
1 ATAAA-ATAATATTATAATAATAATA
* *
100683 ATAAAATAATATTATTATACTAATA
1 ATAAAATAATATTATAATAATAATA
100708 A-AATAATAAATATTATA
1 ATAA-AAT-AATATTATA
100725 TTATTCAGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 6 0.17
25 21 0.60
26 8 0.23
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAAAATAATATTATAATAATAATA
Found at i:100709 original size:22 final size:23
Alignment explanation
Indices: 100681--100724 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
100671 ATAATAATTA
*
100681 TAATAAAATAAT-ATTATTATAC
1 TAATAAAATAATAAATATTATAC
100703 TAATAAAATAATAAATATTATA
1 TAATAAAATAATAAATATTATA
100725 TTATTCAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TAATAAAATAATAAATATTATAC
Found at i:101132 original size:21 final size:21
Alignment explanation
Indices: 101107--101157 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
101097 GGTATAACTA
*
101107 ATAATATTACTAATTATATAT
1 ATAATATTACTAATTATAAAT
* * *
101128 ATAATAATATTTATTATAAAT
1 ATAATATTACTAATTATAAAT
*
101149 TTAATATTA
1 ATAATATTA
101158 AATAGTTATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAATATTACTAATTATAAAT
Found at i:101611 original size:20 final size:20
Alignment explanation
Indices: 101588--101636 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
101578 ATTAATAAAT
101588 TTATTAACTAAT-TTGTATAA
1 TTATTAACTAATATTGTAT-A
101608 TTATATAA--AATATTGTATA
1 TTAT-TAACTAATATTGTATA
*
101627 TAATTAACTA
1 TTATTAACTA
101637 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
18 3 0.12
19 7 0.29
20 11 0.46
21 3 0.12
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (20 bp):
TTATTAACTAATATTGTATA
Found at i:102051 original size:18 final size:17
Alignment explanation
Indices: 102024--102115 Score: 61
Period size: 18 Copynumber: 5.5 Consensus size: 17
102014 AATATATAAG
*
102024 ATATATTAATTATTTTA
1 ATATAATAATTATTTTA
102041 TATATAATAATTATTATTA
1 -ATATAATAATTATT-TTA
102060 ATATTAAT-ATTA-TTTA
1 ATA-TAATAATTATTTTA
* * *
102076 TTA-AATAA-AAATTTA
1 ATATAATAATTATTTTA
102091 AT-TAATAA-TATTATCTA
1 ATATAATAATTATT-T-TA
102108 ATATAATA
1 ATATAATA
102116 TAATTTTATT
Statistics
Matches: 60, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
14 4 0.07
15 13 0.22
16 6 0.10
17 5 0.08
18 25 0.42
19 7 0.12
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATAATAATTATTTTA
Found at i:102102 original size:29 final size:31
Alignment explanation
Indices: 102062--102144 Score: 82
Period size: 32 Copynumber: 2.6 Consensus size: 31
102052 TATTATTAAT
*
102062 ATTAATATTATTTATTAAATAA-A-AATTTA
1 ATTAATAATATTTATTAAATAATATAATTTA
*
102091 ATTAATAATA-TTATCTAATATAATATAATTTT
1 ATTAATAATATTTAT-TAA-ATAATATAATTTA
*
102123 ATTAATTATATTATACTTAAAT
1 ATTAATAATATT-TA-TTAAAT
102145 TATTATTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
28 4 0.09
29 12 0.27
30 4 0.09
31 1 0.02
32 14 0.32
33 3 0.07
34 5 0.11
35 1 0.02
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (31 bp):
ATTAATAATATTTATTAAATAATATAATTTA
Found at i:102249 original size:22 final size:23
Alignment explanation
Indices: 102210--102254 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
102200 AACTACTAAT
102210 TAATAATATTATTATT-AAGTTA
1 TAATAATATTATTATTAAAGTTA
*
102232 TAATAATCTCTATT-TTAAAGTTA
1 TAATAATAT-TATTATTAAAGTTA
102255 GTTTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
TAATAATATTATTATTAAAGTTA
Found at i:102788 original size:12 final size:11
Alignment explanation
Indices: 102739--102811 Score: 64
Period size: 12 Copynumber: 6.7 Consensus size: 11
102729 GGTATCAACC
*
102739 TATATTATTTA
1 TATATTAATTA
102750 TATATTAA-TA
1 TATATTAATTA
*
102760 -ATTTTAA-TA
1 TATATTAATTA
*
102769 TTTATTAATTA
1 TATATTAATTA
102780 TACTATTAATTA
1 TA-TATTAATTA
102792 TTATATTTAATTA
1 -TATA-TTAATTA
102805 TA-ATTAA
1 TATATTAA
102812 GCTATTAGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
9 8 0.15
10 11 0.21
11 11 0.21
12 13 0.25
13 9 0.17
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (11 bp):
TATATTAATTA
Found at i:102837 original size:12 final size:12
Alignment explanation
Indices: 102820--102852 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
102810 AAGCTATTAG
102820 ATAAATATTAAT
1 ATAAATATTAAT
102832 ATAAATATTAAT
1 ATAAATATTAAT
102844 -TAAATATTA
1 ATAAATATTA
102853 GTATTAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAAATATTAAT
Found at i:102857 original size:29 final size:27
Alignment explanation
Indices: 102823--102888 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 27
102813 CTATTAGATA
102823 AATATTAATATAAATATTAATTAAATATT
1 AATATTAATATAAA-ATT-ATTAAATATT
* *
102852 AGTATTAA-A-CAAATTATTAAATATT
1 AATATTAATATAAAATTATTAAATATT
102877 AATAATTAATAT
1 AAT-ATTAATAT
102889 GCATGTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
25 12 0.39
26 8 0.26
27 3 0.10
28 1 0.03
29 7 0.23
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
AATATTAATATAAAATTATTAAATATT
Found at i:103223 original size:18 final size:18
Alignment explanation
Indices: 103198--103256 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 18
103188 TATTGACTCA
103198 ATAT-ATTATAAATAATT
1 ATATAATTATAAATAATT
*
103215 ATATAATTAATAAACTTATT
1 ATATAATT-ATAAA-TAATT
103235 ATTATTAATT-TAAATAA-T
1 A-TA-TAATTATAAATAATT
103253 ATAT
1 ATAT
103257 TAATCTAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
16 1 0.03
17 6 0.17
18 5 0.14
19 7 0.20
20 9 0.26
21 2 0.06
22 5 0.14
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATAATTATAAATAATT
Done.