Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168404.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_62, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141830
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
File 4 of 5
Found at i:104137 original size:28 final size:31
Alignment explanation
Indices: 104105--104202 Score: 87
Period size: 32 Copynumber: 3.1 Consensus size: 31
104095 CTCTATAATT
*
104105 TATTTAAATAAATTAAT-TATTAATAAAATA
1 TATTTAAATAAATTAATATATTAATAATATA
104135 T-TTTAATATAAAAATT-ATATATTAATAATTATA
1 TATTTAA-AT--AAATTAATATATTAATAA-TATA
* * *
104168 TATTTAAAT-AATTAATAAAATAAATTATATA
1 TATTTAAATAAATTAAT-ATATTAATAATATA
104199 TATT
1 TATT
104203 ATTAGATTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
29 5 0.09
30 7 0.12
31 12 0.21
32 21 0.38
33 6 0.11
34 5 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
TATTTAAATAAATTAATATATTAATAATATA
Found at i:104154 original size:11 final size:13
Alignment explanation
Indices: 104140--104240 Score: 53
Period size: 14 Copynumber: 7.2 Consensus size: 13
104130 AAATATTTTA
*
104140 ATATAAAAATTAT
1 ATATAATAATTAT
104153 ATATTAATAATTAT
1 ATA-TAATAATTAT
104167 ATATTTAAATAATTA-
1 ATA--T-AATAATTAT
*
104182 ATAAAATAAATTAT
1 ATATAAT-AATTAT
*
104196 ATAT-ATTATTAGAT
1 ATATAATAATT--AT
* *
104210 TTATAATATATAAT
1 ATATAATA-ATTAT
*
104224 ATTATTATAATTAT
1 A-TATAATAATTAT
104238 ATA
1 ATA
104241 ATAAAAAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 20
0.69 0.10 0.20
Matches are distributed among these distances:
12 6 0.09
13 12 0.18
14 27 0.40
15 13 0.19
16 10 0.15
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (13 bp):
ATATAATAATTAT
Found at i:104170 original size:27 final size:27
Alignment explanation
Indices: 104123--104200 Score: 72
Period size: 29 Copynumber: 2.9 Consensus size: 27
104113 TAAATTAATT
**
104123 ATTAATAAAATATTTTA-ATATAAA-A
1 ATTAATAAAATAAATTATATATAAATA
*
104148 ATTATATATTAAT-AATTATATATTTAAATA
1 ATTA-ATA-AAATAAATTATATA--TAAATA
104178 ATTAATAAAATAAATTATATATA
1 ATTAATAAAATAAATTATATATA
104201 TTATTAGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
25 4 0.10
26 6 0.14
27 8 0.19
28 3 0.07
29 16 0.38
30 5 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
ATTAATAAAATAAATTATATATAAATA
Found at i:104177 original size:16 final size:15
Alignment explanation
Indices: 104143--104199 Score: 61
Period size: 14 Copynumber: 4.0 Consensus size: 15
104133 TATTTTAATA
104143 TAAA-AATTATATAT
1 TAAATAATTATATAT
104157 T-AATAATTATATATT
1 TAAATAATTATATA-T
104172 TAAATAATTA-ATA-
1 TAAATAATTATATAT
104185 -AAATAAATTATATAT
1 TAAAT-AATTATATAT
104200 ATTATTAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.11
13 7 0.19
14 13 0.35
15 5 0.14
16 8 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATAATTATATAT
Found at i:104239 original size:21 final size:21
Alignment explanation
Indices: 104190--104240 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
104180 TAATAAAATA
*
104190 AATTATATATATTATTAGATTT
1 AATTATATATAATATTA-ATTT
*
104212 -ATAATATATAATATT-ATTAT
1 AATTATATATAATATTAATT-T
104232 AATTATATA
1 AATTATATA
104241 ATAAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 3 0.12
20 1 0.04
21 20 0.83
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATTATATATAATATTAATTT
Found at i:104240 original size:26 final size:25
Alignment explanation
Indices: 104193--104277 Score: 90
Period size: 26 Copynumber: 3.5 Consensus size: 25
104183 TAAAATAAAT
*
104193 TATAT-ATATTATTAGATT-TATAA
1 TATATAATATTATTATATTATATAA
104216 TATATAATATTATTATAATTATATAA
1 TATATAATATTATTAT-ATTATATAA
* *
104242 TAAAAAATATTATTAT-TTATAGT--
1 TATATAATATTATTATATTATA-TAA
104265 TATATAATATTAT
1 TATATAATATTAT
104278 AAAAATAGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
23 16 0.30
24 14 0.26
25 4 0.08
26 19 0.36
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TATATAATATTATTATATTATATAA
Found at i:104464 original size:11 final size:12
Alignment explanation
Indices: 104449--104481 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
104439 ATTATATTTG
104449 AATTAATATACT
1 AATTAATATACT
104461 -ATTAATATTACT
1 AATTAATA-TACT
104473 AATTAATAT
1 AATTAATAT
104482 TAAGTCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.37
12 5 0.26
13 7 0.37
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (12 bp):
AATTAATATACT
Found at i:104479 original size:13 final size:13
Alignment explanation
Indices: 104449--104483 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
104439 ATTATATTTG
104449 AATTAATA-TACT
1 AATTAATATTACT
104461 -ATTAATATTACT
1 AATTAATATTACT
104473 AATTAATATTA
1 AATTAATATTA
104484 AGTCTTGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 4 0.19
13 10 0.48
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTAATATTACT
Found at i:104912 original size:19 final size:18
Alignment explanation
Indices: 104884--104943 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
104874 CTTATATATA
104884 ATAATCTATTAATATAATT
1 ATAAT-TATTAATATAATT
*
104903 ATAACTTATT-TTATAAATT
1 ATAA-TTATTAATAT-AATT
*
104922 ATTAATTATTAACATAA-T
1 A-TAATTATTAATATAATT
104940 ATAA
1 ATAA
104944 ACCAATTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
17 3 0.09
18 5 0.15
19 20 0.59
20 6 0.18
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAATTATTAATATAATT
Found at i:105690 original size:181 final size:176
Alignment explanation
Indices: 105052--105703 Score: 619
Period size: 180 Copynumber: 3.7 Consensus size: 176
105042 TAATTTATTA
* * * * *
105052 TTTTAAATCACTTATTAATTTTTGAAATATTAATAGATT-AGTATTACTTTATTTCGAATAAACT
1 TTTTAAATCTCTTATTAATTTTTGAAATATTAATAAATTCATTA-TATTTTATTTCGAATAAGCT
* * * * *
105116 TATATGAACAAAAACATTTGTTTTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATT
65 TGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATGATTTG-AATATAGAATT
* *
105181 GTTCAAATAGT-ATAATTTTTTGAATTGGTTAGGTAAACAGAATT-ATT
129 GTTCAAATAGTCATAATTATTTGAATTGGTTTGGTAAACAG-ATTCATT
* *
105228 TTTTAAATCTCTTATTTATTAATTTTTGAAATATTAACAAATTCATTTTATTTTATTTCGAATAA
1 TTTTAAATCTC----TTATTAATTTTTGAAATATTAATAAATTCATTATATTTTATTTCGAATAA
* ** * * * * *
105293 GCTAGTATGAATTGAGAA-AATTATTTTATGATAAGAC-AAAGGTCT-TAACGATTTGAAT-TAG
62 GCTTGTATGAA-CAAAAACAATTGTTTTATGACAAAACAAAAGGT-TATAATGATTTGAATATAG
* * * * *
105354 ATTATTGTTCATATAGTCTTAACTATTTGAATTGGTTTGGCAAACA-AATCTATT
125 A--ATTGTTCAAATAGTCATAATTATTTGAATTGGTTTGGTAAACAGATTC-ATT
* * * * *
105408 TTTTAAATCCTGTAGTTATTAATTTTTTG-AATATTATTAGATTCGTGT-TGTTTTACTTT-GAA
1 TTTTAAAT-C--T-CTTATTAA-TTTTTGAAATATTAATAAATTCAT-TATATTTTA-TTTCGAA
* * * *
105470 TAAGCTTGTATGAATAGAAATAATTGTTTTATGACAAAACAAAAGGTTATAATGATATGAAGTAT
59 TAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATGATTTGAA-TAT
* *
105535 AGAATTGTTCAAATAGTCATAATTATTTAAATCGGTTTGGTAAACAGATTCATT
123 AGAATTGTTCAAATAGTCATAATTATTTGAATTGGTTTGGTAAACAGATTCATT
* * *
105589 TTTTAAATCTCTTATTAATTTTTGAAAGATTAATAAATT-ATTATATTTTATTTCGAATAATCAT
1 TTTTAAATCTCTTATTAATTTTTGAAATATTAATAAATTCATTATATTTTATTTCGAATAAGCTT
* * * *
105653 GTATGATA-AAAAACAATTGTTATATGACCAAACAAAACGTGATAATGATTT
66 GTATGA-ACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATGATTT
105704 AAAATAATAT
Statistics
Matches: 383, Mismatches: 64, Indels: 58
0.76 0.13 0.11
Matches are distributed among these distances:
175 4 0.01
176 73 0.19
177 22 0.06
178 6 0.02
179 30 0.08
180 159 0.42
181 80 0.21
182 4 0.01
183 5 0.01
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (176 bp):
TTTTAAATCTCTTATTAATTTTTGAAATATTAATAAATTCATTATATTTTATTTCGAATAAGCTT
GTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAATGATTTGAATATAGAATTGT
TCAAATAGTCATAATTATTTGAATTGGTTTGGTAAACAGATTCATT
Found at i:105877 original size:21 final size:21
Alignment explanation
Indices: 105836--105878 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
105826 GCATATAGAT
*
105836 ATATTATAAATATATGTTTAA
1 ATATTATAAATATATGATTAA
*
105857 ATATTATAATATTTAT-ATTAA
1 ATATTATAA-ATATATGATTAA
105878 A
1 A
105879 CAATAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATATTATAAATATATGATTAA
Found at i:105923 original size:25 final size:26
Alignment explanation
Indices: 105890--105947 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
105880 AATAATATTA
*
105890 ATAATTTAAATTAATACT-ATATAATT
1 ATAATTTAAATT-ATAATAATATAATT
105916 -TAATTTAAATTATAATAATATAATT
1 ATAATTTAAATTATAATAATATAATT
105941 ATAATTT
1 ATAATTT
105948 TATATAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 4 0.14
25 19 0.66
26 6 0.21
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
ATAATTTAAATTATAATAATATAATT
Found at i:105933 original size:20 final size:21
Alignment explanation
Indices: 105888--105945 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
105878 ACAATAATAT
*
105888 TAATAATTTAAATTAATACTA
1 TAATAATTTAATTTAATACTA
*
105909 T-ATAATTTAATTTAA-ATTA
1 TAATAATTTAATTTAATACTA
*
105928 TAATAATATAATTATAAT
1 TAATAATTTAATT-TAAT
105946 TTTATATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 4 0.13
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATAATTTAATTTAATACTA
Found at i:106369 original size:21 final size:21
Alignment explanation
Indices: 106345--106404 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
106335 TAATTATACC
*
106345 TAATATTGATATTATTATTTG
1 TAATATTGATATTATTATTTA
*
106366 TAATA-TGTATATTAATTAGTTA
1 TAATATTG-ATATT-ATTATTTA
*
106388 TAATATT-ATTTTATTAT
1 TAATATTGATATTATTAT
106405 AATATAGATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 6 0.19
21 14 0.44
22 11 0.34
23 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TAATATTGATATTATTATTTA
Found at i:107576 original size:25 final size:25
Alignment explanation
Indices: 107545--107595 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
107535 AGTTATTAAT
107545 ATTAATAATATT-AATCAATA-TATTA
1 ATTAATAAT-TTAAAT-AATATTATTA
107570 ATTAATAATTTAAATAATATTATTA
1 ATTAATAATTTAAATAATATTATTA
107595 A
1 A
107596 ATAAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTAATAATTTAAATAATATTATTA
Found at i:107582 original size:12 final size:13
Alignment explanation
Indices: 107545--107692 Score: 74
Period size: 12 Copynumber: 11.3 Consensus size: 13
107535 AGTTATTAAT
107545 ATTAATAATATTA
1 ATTAATAATATTA
*
107558 ATCAAT-ATATTA
1 ATTAATAATATTA
107570 ATTAATAAT-TTA
1 ATTAATAATATTA
* *
107582 AATAATATTATTAA
1 ATTAATAATATT-A
* * * *
107596 ATAAATTAAAACTG
1 ATTAA-TAATATTA
107610 ATT-ATAATATTA
1 ATTAATAATATTA
*
107622 ATT-ATAATATATT
1 ATTAATAATAT-TA
* **
107635 GTTTGTAACTATTA
1 ATTAATAA-TATTA
*
107649 ATAAAGT-ATATTA
1 ATTAA-TAATATTA
107662 ATT-ATAATATTTGA
1 ATTAATAATA-TT-A
*
107676 ATTTATAATATTA
1 ATTAATAATATTA
107689 ATTA
1 ATTA
107693 TTCTATAATG
Statistics
Matches: 99, Mismatches: 24, Indels: 24
0.67 0.16 0.16
Matches are distributed among these distances:
11 1 0.01
12 40 0.40
13 26 0.26
14 18 0.18
15 14 0.14
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (13 bp):
ATTAATAATATTA
Found at i:107589 original size:22 final size:22
Alignment explanation
Indices: 107564--107605 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
107554 ATTAATCAAT
*
107564 ATATTAATT-AATAATTTAAATA
1 ATATT-ATTAAATAAATTAAATA
107586 ATATTATTAAATAAATTAAA
1 ATATTATTAAATAAATTAAA
107606 ACTGATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATTATTAAATAAATTAAATA
Found at i:107765 original size:6 final size:6
Alignment explanation
Indices: 107745--107801 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
107735 TTTAATTAAA
* * * *
107745 AATTAT -ATTAC AATTAT AATTAT AA-TAT TATTAT AATTAA AATAAT
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT
107791 AA-TAT AATTAT
1 AATTAT AATTAT
107802 TATTGAGAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
5 12 0.30
6 28 0.70
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTAT
Found at i:107765 original size:17 final size:17
Alignment explanation
Indices: 107745--107801 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
107735 TTTAATTAAA
*
107745 AATTATATTACAATTAT
1 AATTATAATACAATTAT
**
107762 AATTATAATATTATTAT
1 AATTATAATACAATTAT
* *
107779 AATTAAAATA-ATAATAT
1 AATTATAATACA-ATTAT
107796 AATTAT
1 AATTAT
107802 TATTGAGAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTATAATACAATTAT
Found at i:107782 original size:23 final size:23
Alignment explanation
Indices: 107750--107801 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
107740 TTAAAAATTA
* * *
107750 TATTACAATTATAATTATAATAT
1 TATTATAATTAAAATAATAATAT
107773 TATTATAATTAAAATAATAATAT
1 TATTATAATTAAAATAATAATAT
*
107796 AATTAT
1 TATTAT
107802 TATTGAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TATTATAATTAAAATAATAATAT
Found at i:107984 original size:13 final size:12
Alignment explanation
Indices: 107956--108024 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 12
107946 AATTAATTAG
107956 AAATTAT-ATTT
1 AAATTATAATTT
*
107967 GAATTAATAATTT
1 AAATT-ATAATTT
107980 AAATTATAATTTTT
1 AAATTATAA--TTT
107994 ATAATTATAAATTT
1 A-AATTAT-AATTT
108008 -AA-TATAATTT
1 AAATTATAATTT
108018 -AATTATA
1 AAATTATA
108025 TTACTATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
10 7 0.14
11 11 0.22
12 8 0.16
13 8 0.16
14 7 0.14
15 6 0.12
16 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (12 bp):
AAATTATAATTT
Found at i:108136 original size:29 final size:28
Alignment explanation
Indices: 108103--108205 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 28
108093 ATAATATGGA
108103 ATTATTATCTTATAATATAATGTAAATAT
1 ATTATTAT-TTATAATATAATGTAAATAT
*
108132 ATTA-TATTTATAA-ACTATAT-TATATAT
1 ATTATTATTTATAATA-TA-ATGTAAATAT
*
108159 AATTAATATTTATAATAT--TGTAAATA-
1 -ATTATTATTTATAATATAATGTAAATAT
*
108185 ATTCTTATTTAATAATATAAT
1 ATTATTATTT-ATAATATAAT
108206 AATATAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 19
0.73 0.05 0.23
Matches are distributed among these distances:
25 8 0.13
26 9 0.15
27 19 0.31
28 10 0.16
29 14 0.23
30 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.50
Consensus pattern (28 bp):
ATTATTATTTATAATATAATGTAAATAT
Found at i:108176 original size:25 final size:26
Alignment explanation
Indices: 108148--108214 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
108138 TTTATAAACT
108148 ATATTATATATAATTAATATTT-ATA
1 ATATTATATATAATTAATATTTAATA
* * **
108173 ATATTGTAAATAATTCTTATTTAATA
1 ATATTATATATAATTAATATTTAATA
*
108199 ATATAATAATATAATT
1 ATATTAT-ATATAATT
108215 TATTAAAATA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
25 18 0.55
26 8 0.24
27 7 0.21
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
ATATTATATATAATTAATATTTAATA
Found at i:108184 original size:18 final size:19
Alignment explanation
Indices: 108112--108184 Score: 57
Period size: 18 Copynumber: 3.9 Consensus size: 19
108102 AATTATTATC
108112 TTATAATATAATGTAAATATA
1 TTATAATAT--TGTAAATATA
*
108133 TTAT-AT-TTATAAACTATA
1 TTATAATATTGTAAA-TATA
*
108151 TTATATATAAT-T-AATAT-
1 TTATA-ATATTGTAAATATA
108168 TTATAATATTGTAAATA
1 TTATAATATTGTAAATA
108185 ATTCTTATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 15
0.70 0.05 0.25
Matches are distributed among these distances:
16 4 0.09
17 11 0.26
18 15 0.35
19 3 0.07
20 5 0.12
21 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (19 bp):
TTATAATATTGTAAATATA
Found at i:108211 original size:54 final size:55
Alignment explanation
Indices: 108090--108211 Score: 126
Period size: 54 Copynumber: 2.2 Consensus size: 55
108080 ACAATATTAT
* *
108090 CTAATAATATGGAATTATTATCTTATAATATAATGTAAATATATTATATTTATAAA
1 CTAATAATATAGAATTAATATCTTATAATAT-ATGTAAATATATTATATTTATAAA
* * *
108146 CTATATTATATATAATTAATAT-TTATAATAT-TGTAAATA-ATTCTTATTTAATAATA
1 CTA-ATAATATAGAATTAATATCTTATAATATATGTAAATATATT-ATATTT-ATAA-A
108202 -TAATAATATA
1 CTAATAATATA
108212 ATTTATTAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
53 3 0.05
54 20 0.36
55 6 0.11
56 13 0.23
57 14 0.25
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (55 bp):
CTAATAATATAGAATTAATATCTTATAATATATGTAAATATATTATATTTATAAA
Found at i:108243 original size:16 final size:15
Alignment explanation
Indices: 108202--108246 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
108192 TTTAATAATA
108202 TAATAATATAATTTAT
1 TAATAATATAA-TTAT
108218 T-A-AA-ATAATTAT
1 TAATAATATAATTAT
108230 TAAATAATATAATTAT
1 T-AATAATATAATTAT
108246 T
1 T
108247 TAACTTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.20
13 4 0.16
14 3 0.12
15 3 0.12
16 10 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATAATATAATTAT
Found at i:108491 original size:15 final size:14
Alignment explanation
Indices: 108473--108514 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
108463 AATTTAATAT
108473 TATATTAATTAATTC
1 TATATTAA-TAATTC
108488 TATATTAATAATT-
1 TATATTAATAATTC
108501 TGATATATAATAAT
1 T-ATAT-TAATAAT
108515 ATAATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:108658 original size:10 final size:10
Alignment explanation
Indices: 108645--108703 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
108635 ATCAATTGAT
108645 ATTATAATTA
1 ATTATAATTA
108655 ATTA-AA-TA
1 ATTATAATTA
108663 ATTA-ATATATA
1 ATTATA-AT-TA
*
108674 ATTATATTTA
1 ATTATAATTA
*
108684 TTTATAATTA
1 ATTATAATTA
*
108694 ATAATAATTA
1 ATTATAATTA
108704 TAAATTCTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
8 7 0.17
9 3 0.08
10 22 0.55
11 7 0.17
12 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTATAATTA
Found at i:108677 original size:23 final size:26
Alignment explanation
Indices: 108622--108705 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
108612 CAATATTTTA
*
108622 ATAA-TATATTTATA-TCAATTGATATT
1 ATAATTATATTTATAAT-AATTAATA-T
108648 ATAATTA-A-TTA-AATAATTAATAT
1 ATAATTATATTTATAATAATTAATAT
*
108671 ATAATTATATTTATTTATAATTAATA-
1 ATAATTATATTTA-TAATAATTAATAT
108697 ATAATTATA
1 ATAATTATA
108706 AATTCTATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
23 8 0.16
24 9 0.18
25 7 0.14
26 14 0.28
27 12 0.24
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
ATAATTATATTTATAATAATTAATAT
Found at i:108718 original size:32 final size:34
Alignment explanation
Indices: 108653--108729 Score: 88
Period size: 32 Copynumber: 2.3 Consensus size: 34
108643 ATATTATAAT
108653 TAATTAAATAATTAATATATAATTATATTTATTTA
1 TAATT-AATAATTAATATATAATTATATTTATTTA
* *
108688 TAATTAATAA-TAAT-TATAAATTCTA-TTATTTG
1 TAATTAATAATTAATATAT-AATTATATTTATTTA
*
108720 TAGTTAATAA
1 TAATTAATAA
108730 ATATTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
32 18 0.47
33 10 0.26
34 5 0.13
35 5 0.13
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (34 bp):
TAATTAATAATTAATATATAATTATATTTATTTA
Found at i:109998 original size:183 final size:181
Alignment explanation
Indices: 109666--110061 Score: 483
Period size: 183 Copynumber: 2.2 Consensus size: 181
109656 AAAATTTTAA
* * * * * * * * *
109666 AATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAGTTTGGTAGATAAATTTATTTTTTAA
1 AATAGACAATTGTTCAAATAGTCATAACTATTTAAACTAATTTGGAAAACAAATTTATTTTGTAA
*** * * * * *
109731 ATCTCTTTTTTATTAATTTTTGGAATATTATTATATTAGTATTATTTTATTTTGAATAAGCCTAT
66 ATCTCTTACATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTTGAATAAACCTAT
* * *
109796 ATGAACAGAAATAATTGTTTTATGACAAAACAAAAGGTTAT-ATAATGA-TTTG
131 ATGAACAGAAACAATTGTTTTATGACAAAACAAAA-G--ATCATAACGATTTTC
*
109848 AAGTATACAATTGTTCAAATAGTCATAACTATTTAAACTAATTTGGAAAACAAATTTATTTTGTA
1 AA-TAGACAATTGTTCAAATAGTCATAACTATTTAAACTAATTTGGAAAACAAATTTATTTTGTA
*
109913 AATCTCTTACATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTTGAATAAACTTG
65 AATCTCTTACATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTTGAATAAACCT-
* * *
109978 A-ATGAACTGAAACCATTGTTTTGTGACAAAACAAAAGATCATAACGATTTTC
129 ATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTTC
* *
110030 AATGGACAATTGTTCAAATAGTTATAACTATT
1 AATAGACAATTGTTCAAATAGTCATAACTATT
110062 AGTAAAAATA
Statistics
Matches: 182, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
180 2 0.01
181 33 0.18
182 8 0.04
183 138 0.76
184 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (181 bp):
AATAGACAATTGTTCAAATAGTCATAACTATTTAAACTAATTTGGAAAACAAATTTATTTTGTAA
ATCTCTTACATATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTTGAATAAACCTAT
ATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTTC
Found at i:111145 original size:23 final size:22
Alignment explanation
Indices: 111093--111147 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
111083 ATTTGTAAAC
* *
111093 AAATTTATTTTTAAAATTTTTT
1 AAATTAATTTTTAAAATTTATT
*
111115 ACTTATTAATTTTTAAAATATTATT
1 A--AATTAATTTTTAAAAT-TTATT
111140 AAATTAAT
1 AAATTAAT
111148 ATTATTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
22 1 0.04
23 6 0.23
24 14 0.54
25 5 0.19
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
AAATTAATTTTTAAAATTTATT
Found at i:111316 original size:180 final size:181
Alignment explanation
Indices: 111095--111419 Score: 438
Period size: 180 Copynumber: 1.8 Consensus size: 181
111085 TTGTAAACAA
*
111095 ATTTATTTTTAAAATTTTTTACTTATTAATTTTTAAAATATTATTAAATTAATATTATTTTAATC
1 ATTTATTTTTAAAATTTTTTACTTATTAAGTTTTAAAATATTATTAAATTAATATTATTTTAATC
** * * * *
111160 AAAATAAGCTTGTACGAACA-AAACAATTGTTTTACGACAAAAGAAAAGGTCATAACGATTTAAA
66 AAAATAAAATAGCACGAACAGAAACAATTGTTTAACGACAAAAGAAAAGGTCATAACAATTTAAA
*
111224 ATAGATAATCATTCATATCATTGTAACTATTTTAACTAGTTCAACAATTAG
131 ATAAATAATCATTCATATCATTGTAACTATTTTAACTAGTTCAACAATTAG
* ** * *
111275 ATTTATTTTT-TAATTTTCTTGGTTATTAAGTTTTGAAATATTATTAAATTAATATTATTTTATT
1 ATTTATTTTTAAAATTTT-TTACTTATTAAGTTTTAAAATATTATTAAATTAATATTATTTTAAT
* * * * * * *
111339 CTAAATAAAATAGCATGAACAGAACCAATTGTTTAATGACAAAATAAAAGGTTATAACAATTTGA
65 CAAAATAAAATAGCACGAACAGAAACAATTGTTTAACGACAAAAGAAAAGGTCATAACAATTTAA
*
111404 AATAAATAATTATTCA
130 AATAAATAATCATTCA
111420 AATAGTCAAA
Statistics
Matches: 122, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
179 6 0.05
180 66 0.54
181 50 0.41
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (181 bp):
ATTTATTTTTAAAATTTTTTACTTATTAAGTTTTAAAATATTATTAAATTAATATTATTTTAATC
AAAATAAAATAGCACGAACAGAAACAATTGTTTAACGACAAAAGAAAAGGTCATAACAATTTAAA
ATAAATAATCATTCATATCATTGTAACTATTTTAACTAGTTCAACAATTAG
Found at i:111580 original size:174 final size:176
Alignment explanation
Indices: 111310--111678 Score: 417
Period size: 174 Copynumber: 2.1 Consensus size: 176
111300 TTAAGTTTTG
* * * *
111310 AAATATTATTAAATTAATATTATTTTATTCTAAATAAAATAGCATGAACAGAACCAATTGTTTAA
1 AAATATTAATAAATTAGTATTATTTTATTCTAAATAAAATAGCATGAACAAAAACAATTGTTTAA
* * * *
111375 TGACAAAATAAAAGGTTATAACAATTTGAAATAAATAATTATTCAAATAGTCAAAACTATTTGAA
66 TGACAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTCAAATAGTCAAAACTATTTGAA
* *
111440 ATTGTTTAGTAAACA-AATTTACTTTT-TAAATATACTAATTAATTTTCC
131 ATGGTTCAGTAAACAGAA-TTA-TTTTCTAAATAT-CTAA-TAATTTTCC
* * * *
111488 AAATATTAATAAATTAGTATTATTTTATTTTAAA-ACAA-A-C-TTAACAAAAACAATTGTTTTA
1 AAATATTAATAAATTAGTATTATTTTATTCTAAATAAAATAGCATGAACAAAAACAATTGTTTAA
** * * * *
111549 TGACAAAACAAAAAGTAATAATGATTTGAAATAAATAATTGCTCAAATAGTTATAATTATTTGAA
66 TGACAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTCAAATAGTCAAAACTATTTGAA
* * * * **
111614 CTGGTTCAGTAAATAGAATTATTTTCTAAATCTCTTATAATTTTTT
131 ATGGTTCAGTAAACAGAATTATTTTCTAAATATCTAATAATTTTCC
111660 AAAGTATTAATAAATTAGT
1 AAA-TATTAATAAATTAGT
111679 TTTAATAGTA
Statistics
Matches: 162, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
172 10 0.06
173 22 0.14
174 92 0.57
175 3 0.02
176 1 0.01
177 3 0.02
178 31 0.19
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (176 bp):
AAATATTAATAAATTAGTATTATTTTATTCTAAATAAAATAGCATGAACAAAAACAATTGTTTAA
TGACAAAACAAAAAGTAATAACAATTTGAAATAAATAATTACTCAAATAGTCAAAACTATTTGAA
ATGGTTCAGTAAACAGAATTATTTTCTAAATATCTAATAATTTTCC
Found at i:112087 original size:26 final size:26
Alignment explanation
Indices: 112015--112087 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
112005 ATTAATATTT
* *
112015 TATAGTATTAATATAATAATTATAAA
1 TATATTATTAATATAATTATTATAAA
*
112041 TATTATTATTAATATCA-TATTATAAA
1 TA-TATTATTAATATAATTATTATAAA
112067 TATATTATATAAT-TAATTATT
1 TATATTAT-TAATATAATTATT
112088 TGTAATATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 8 0.20
26 20 0.50
27 12 0.30
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
TATATTATTAATATAATTATTATAAA
Found at i:112582 original size:26 final size:26
Alignment explanation
Indices: 112553--112625 Score: 66
Period size: 26 Copynumber: 2.8 Consensus size: 26
112543 GTATTTGAAT
112553 AATTATATAAATTATAAATTATATAC
1 AATTATATAAATTATAAATTATATAC
*
112579 AATTATAGT-AA-TA-AAATTAATTATAT
1 AATTATA-TAAATTATAAATT-A-TATAC
112605 AATT-T-TAAATTATATAATTAT
1 AATTATATAAATTATA-AATTAT
112626 TTATCATTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
23 1 0.03
24 7 0.18
25 7 0.18
26 19 0.49
27 5 0.13
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (26 bp):
AATTATATAAATTATAAATTATATAC
Found at i:112672 original size:11 final size:11
Alignment explanation
Indices: 112656--112685 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
112646 TAGGTATCTA
112656 ATATAATTACG
1 ATATAATTACG
*
112667 ATATAATTATG
1 ATATAATTACG
112678 ATATAATT
1 ATATAATT
112686 GTGTAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (11 bp):
ATATAATTACG
Found at i:113465 original size:21 final size:22
Alignment explanation
Indices: 113441--113482 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 22
113431 TTTCTTTTGT
113441 TTATACAAATAAT-TAT-TAAAA
1 TTAT-CAAATAATATATATAAAA
*
113462 TTATTAAATAATATATATAAA
1 TTATCAAATAATATATATAAA
113483 TAATTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TTATCAAATAATATATATAAAA
Found at i:113556 original size:15 final size:14
Alignment explanation
Indices: 113508--113565 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
113498 TTATTTGAAC
*
113508 TATTTAAATATCTTAA
1 TATTAAAATAT-TT-A
* *
113524 TATTATAATAATTA
1 TATTAAAATATTTA
113538 -ATTAAAATTATTTA
1 TATTAAAA-TATTTA
113552 TATTAAAATATTTA
1 TATTAAAATATTTA
113566 ATTTATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 6 0.17
14 12 0.34
15 9 0.26
16 8 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTAAAATATTTA
Found at i:113653 original size:57 final size:57
Alignment explanation
Indices: 113592--113725 Score: 141
Period size: 57 Copynumber: 2.3 Consensus size: 57
113582 TTATATTTTA
* *
113592 TATAATATTATTATTATA-AAATAAATTATATATTA-AATAATA-TATATAATAAACTAT
1 TATAATATTATAATTATATAAAT-AATTA-ATAATATAATAATATTAT-TAATAAACTAT
* * * *
113649 TATAATAGTAATAATT-TATAAATAGTTAATAATATAATAATATTATTAATATAGTAT
1 TATAATA-TTATAATTATATAAATAATTAATAATATAATAATATTATTAATAAACTAT
113706 TATTAATATTATAATTATAT
1 TA-TAATATTATAATTATAT
113726 TAATTATAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
56 5 0.08
57 38 0.59
58 21 0.33
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (57 bp):
TATAATATTATAATTATATAAATAATTAATAATATAATAATATTATTAATAAACTAT
Found at i:113716 original size:23 final size:24
Alignment explanation
Indices: 113685--113742 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
113675 TAATAATATA
113685 ATAATATTATTAA-TATAGT-ATT
1 ATAATATTATTAATTATAGTAATT
*
113707 ATTAATATTA-TAATTATATTAATT
1 A-TAATATTATTAATTATAGTAATT
113731 ATAATATT-TTAA
1 ATAATATTATTAA
113743 AATTTATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 4 0.13
23 23 0.74
24 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
ATAATATTATTAATTATAGTAATT
Found at i:113890 original size:27 final size:29
Alignment explanation
Indices: 113843--113916 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 29
113833 TAATAACATT
113843 ACTAAATATTATAGTTAAATATAAGAATA
1 ACTAAATATTATAGTTAAATATAAGAATA
*
113872 ACTAAAT-TATATA-TT-AATATAATAAT-
1 ACTAAATAT-TATAGTTAAATATAAGAATA
* *
113898 ATTAATTATTAGTAGTTAA
1 ACTAAATATTA-TAGTTAA
113917 TAAAAAATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
26 7 0.19
27 13 0.35
28 5 0.14
29 12 0.32
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (29 bp):
ACTAAATATTATAGTTAAATATAAGAATA
Found at i:113917 original size:28 final size:27
Alignment explanation
Indices: 113804--113918 Score: 73
Period size: 27 Copynumber: 4.2 Consensus size: 27
113794 TTATATTTAA
113804 TTAATAT-ATAATATT-ATTATT-TA-
1 TTAATATAATAATATTAATTATTATAG
* *
113827 TGTAAT-TAATAACATTACTAAATATTATAG
1 T-TAATATAAT-A-A-TATTAATTATTATAG
* *
113857 TTAAATATAAGAATAACTAAATTA-TATA-
1 TT-AATATAATAAT-A-TTAATTATTATAG
113885 TTAATATAATAATATTAATTATTAGTAG
1 TTAATATAATAATATTAATTATTA-TAG
113913 TTAATA
1 TTAATA
113919 AAAAATGAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 25
0.68 0.08 0.25
Matches are distributed among these distances:
23 2 0.03
24 6 0.09
25 7 0.10
26 4 0.06
27 15 0.22
28 14 0.20
29 9 0.13
30 9 0.13
31 3 0.04
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (27 bp):
TTAATATAATAATATTAATTATTATAG
Found at i:114245 original size:179 final size:181
Alignment explanation
Indices: 113917--114346 Score: 528
Period size: 179 Copynumber: 2.4 Consensus size: 181
113907 TAGTAGTTAA
* * * * * * * * *
113917 TAAAAAATGAATCTATTTACTGAACAAGTTTAAATAATTATAATTATTTGAACAATTATTTATTG
1 TAAAAAATAAATATGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
* **
113982 AAAATTGCTATAACCTTTTGCTTTGTCATAAAATGATTTTTTCTATTCATACAAGCTTATTTTGA
66 CAAATTGCTATAACCTTTTGCTTTGTCATAAAACAATTTTTTCTATTCATACAAGCTTATTTTGA
114047 ATAAAATAATACAAATTTATTAA-A-TTAAGACAATTAATAAGTAAAAGATT
131 ATAAAATAATACAAATTTATTAATATTTAA-ACAATTAATAAGTAAAAGATT
* *
114097 T-AAAAATAAATATGTTTACTAAACAAGTTCAAATCGTTATGACTATTTGAATAATTATTTATTT
1 TAAAAAATAAATATGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
* * * * * *
114161 CAAATTGTTATGACTTTTTGTTTTGTCATAAAACAATTGTTTT-TGTTCATACCAGCTTA-TTTG
66 CAAATTGCTATAACCTTTTGCTTTGTCATAAAACAATT-TTTTCTATTCATACAAGCTTATTTTG
** * *
114224 AAATAAAATAATATTAATTTATTAATATTTCAACAATTTATAAGTAAAAGATT
130 -AATAAAATAATACAAATTTATTAATATTTAAACAATTAATAAGTAAAAGATT
* * * * * *
114277 TAAAAAATAAATATGTTTGCCGAACAAGTTCAAATAGTCATGACAATTTGAATAATAATCTATTT
1 TAAAAAATAAATATGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
114342 CAAAT
66 CAAAT
114347 CATCGTGAGC
Statistics
Matches: 213, Mismatches: 32, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
178 4 0.02
179 119 0.56
180 27 0.13
181 63 0.30
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (181 bp):
TAAAAAATAAATATGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
CAAATTGCTATAACCTTTTGCTTTGTCATAAAACAATTTTTTCTATTCATACAAGCTTATTTTGA
ATAAAATAATACAAATTTATTAATATTTAAACAATTAATAAGTAAAAGATT
Found at i:114363 original size:181 final size:178
Alignment explanation
Indices: 113996--114364 Score: 465
Period size: 181 Copynumber: 2.1 Consensus size: 178
113986 TTGCTATAAC
* **
113996 CTTTTGCTTTGTCATAAAATGATTTTTTCTATTCATACAAGCTTATTTTGAATAAAATAATACAA
1 CTTTTGTTTTGTCATAAAACAATTTTTTCTATTCATACAAGCTTATTTTGAATAAAATAATACAA
*
114061 ATTTATTAAATTAAGACAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACTAAACAAGTT
66 ATTTATTAAATTAAGACAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACCAAACAAGTT
* * * * * ** *
114126 CAAATCGTTATGACTATTTGAATAATTATTTATTTCAAATTGTTATGA
131 CAAATAGTCATGACAATTTGAATAATAATCTATTTCAAATCATCATGA
* *
114174 CTTTTTGTTTTGTCATAAAACAATTGTTTT-TGTTCATACCAGCTTA-TTTGAAATAAAATAATA
1 C-TTTTGTTTTGTCATAAAACAATT-TTTTCTATTCATACAAGCTTATTTTG-AATAAAATAATA
** * * * *
114237 TTAATTTATTAATATTTCA-ACAATTTATAAGTAAAAGATTTAAAAAATAAATATGTTTGCCGAA
63 CAAATTTATTAA-A-TTAAGACAATTAATAAGTAAAAGATTT-AAAAATAAATATGTTTACCAAA
*
114301 CAAGTTCAAATAGTCATGACAATTTGAATAATAATCTATTTCAAATCATCGTGA
125 CAAGTTCAAATAGTCATGACAATTTGAATAATAATCTATTTCAAATCATCATGA
114355 GCTTTTGTTT
1 -CTTTTGTTT
114365 AGTATTATTA
Statistics
Matches: 163, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
178 5 0.03
179 56 0.34
180 26 0.16
181 75 0.46
182 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.41
Consensus pattern (178 bp):
CTTTTGTTTTGTCATAAAACAATTTTTTCTATTCATACAAGCTTATTTTGAATAAAATAATACAA
ATTTATTAAATTAAGACAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACCAAACAAGTT
CAAATAGTCATGACAATTTGAATAATAATCTATTTCAAATCATCATGA
Found at i:114879 original size:21 final size:21
Alignment explanation
Indices: 114840--114879 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
114830 ATATTGTTAA
*
114840 TTATAATTTATAATATAATAT
1 TTATAATATATAATATAATAT
114861 TTATAATATATTAAT-TAAT
1 TTATAATATA-TAATATAAT
114880 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATATATAATATAATAT
Found at i:114890 original size:17 final size:17
Alignment explanation
Indices: 114870--114919 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
114860 TTTATAATAT
114870 ATTAATTAATTAAATTA
1 ATTAATTAATTAAATTA
* * *
114887 ATTAATTTATGAAAATA
1 ATTAATTAATTAAATTA
114904 ATT-A-TAATTATAATTA
1 ATTAATTAATTA-AATTA
114920 TATTTATTGT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
15 4 0.15
16 5 0.19
17 17 0.65
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
ATTAATTAATTAAATTA
Found at i:114965 original size:10 final size:10
Alignment explanation
Indices: 114950--115005 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
114940 TATAACAATA
114950 TAATATTATT
1 TAATATTATT
114960 TAATATTATT
1 TAATATTATT
* *
114970 T-ATTTTA-A
1 TAATATTATT
114978 TAATTATTATAT
1 TAA-TATTAT-T
*
114990 TAATTTTATT
1 TAATATTATT
115000 TAATAT
1 TAATAT
115006 AACATTAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
8 1 0.03
9 6 0.17
10 21 0.58
11 5 0.14
12 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TAATATTATT
Found at i:114967 original size:33 final size:32
Alignment explanation
Indices: 114930--115017 Score: 92
Period size: 30 Copynumber: 2.8 Consensus size: 32
114920 TATTTATTGT
114930 TATTATTTATTATAACAATATAATATTATTTAA
1 TATTATTTATTATAACAATATAATATTA-TTAA
* * *
114963 TATTATTTATTTTAATAAT-TATTA-TATTAA
1 TATTATTTATTATAACAATATAATATTATTAA
* * *
114993 TTTTATTTAATATAACATTA-AATAT
1 TATTATTTATTATAACAATATAATAT
115018 CTTATCTTAT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
30 21 0.48
31 2 0.05
32 4 0.09
33 17 0.39
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (32 bp):
TATTATTTATTATAACAATATAATATTATTAA
Found at i:114976 original size:15 final size:15
Alignment explanation
Indices: 114958--115001 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
114948 TATAATATTA
114958 TTTAATATTATTTAT
1 TTTAATATTATTTAT
114973 TTTAATAATTA-TTAT
1 TTTAAT-ATTATTTAT
* *
114988 ATTAATTTTATTTA
1 TTTAATATTATTTA
115002 ATATAACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 3 0.12
15 18 0.72
16 4 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTAATATTATTTAT
Found at i:115037 original size:15 final size:15
Alignment explanation
Indices: 115013--115046 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
115003 TATAACATTA
115013 AATATCTTATCTTAT
1 AATATCTTATCTTAT
* *
115028 AATATTTTATTTTAT
1 AATATCTTATCTTAT
115043 AATA
1 AATA
115047 AATTACAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
AATATCTTATCTTAT
Found at i:115112 original size:14 final size:14
Alignment explanation
Indices: 115090--115187 Score: 55
Period size: 14 Copynumber: 7.1 Consensus size: 14
115080 AATTATAGTA
*
115090 TAATGTATTAATAT
1 TAATATATTAATAT
115104 TAATATATTAAT-T
1 TAATATATTAATAT
*
115117 TAATAT-TGGACATAT
1 TAATATAT-TA-ATAT
* *
115132 ATATTA-ATTACTAT
1 -TAATATATTAATAT
* *
115146 TAATAAATTATTAT
1 TAATATATTAATAT
115160 TAAT-TA-TAATAAT
1 TAATATATTAAT-AT
*
115173 TAATAT-TTATTAT
1 TAATATATTAATAT
115186 TA
1 TA
115188 TATTAAAATA
Statistics
Matches: 65, Mismatches: 10, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
12 4 0.06
13 23 0.35
14 31 0.48
15 2 0.03
16 5 0.08
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (14 bp):
TAATATATTAATAT
Found at i:115179 original size:19 final size:19
Alignment explanation
Indices: 115062--115185 Score: 55
Period size: 19 Copynumber: 6.5 Consensus size: 19
115052 CAATAGTATA
*
115062 ATTAATTATATTAATTACA-
1 ATTAATTATAATAATTA-AT
* *
115081 ATTATAGTATAATGTATTAAT
1 ATTA-ATTATAAT-AATTAAT
*
115102 ATTAA-TATATTAATTTAAT
1 ATTAATTATAATAA-TTAAT
* *
115121 ATTGGACATATATATTAATTACT
1 ATT--A-AT-TATAATAATTAAT
*
115144 ATT-A--AT-A-AATTATT
1 ATTAATTATAATAATTAAT
115158 ATTAATTATAATAATTAAT
1 ATTAATTATAATAATTAAT
*
115177 ATTTATTAT
1 ATTAATTAT
115186 TATATTAAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 28
0.68 0.08 0.24
Matches are distributed among these distances:
14 9 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 32 0.40
20 8 0.10
21 9 0.11
22 1 0.01
23 7 0.09
24 8 0.10
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTAATTATAATAATTAAT
Found at i:115192 original size:27 final size:27
Alignment explanation
Indices: 115144--115199 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
115134 ATTAATTACT
*
115144 ATTAATAAATTATTATTAATTATAATA
1 ATTAATAAATTATTATTAATTAAAATA
*
115171 ATTAAT-ATTTATTATTATATTAAAATA
1 ATTAATAAATTATTATTA-ATTAAAATA
115198 AT
1 AT
115200 ATACTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTAATAAATTATTATTAATTAAAATA
Found at i:115210 original size:26 final size:26
Alignment explanation
Indices: 115155--115212 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
115145 TTAATAAATT
* *
115155 ATTATTAATTATAATAATTAATATTT
1 ATTATTAATTAAAATAATTAATATTA
115181 ATTATTATATTAAAATAA-T-ATACTTA
1 ATTATTA-ATTAAAATAATTAATA-TTA
115207 ATTATT
1 ATTATT
115213 TAAAATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 3 0.11
26 16 0.57
27 9 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
ATTATTAATTAAAATAATTAATATTA
Found at i:115276 original size:19 final size:20
Alignment explanation
Indices: 115241--115282 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
115231 TATTAATACA
*
115241 ATAATTATTATAAATTATAT
1 ATAATTATTATAAATTAAAT
*
115261 ATAATTA-TATATATTAAAT
1 ATAATTATTATAAATTAAAT
115280 ATA
1 ATA
115283 TATAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAATTATTATAAATTAAAT
Found at i:115351 original size:25 final size:25
Alignment explanation
Indices: 115297--115360 Score: 58
Period size: 25 Copynumber: 2.5 Consensus size: 25
115287 AATTTATTAT
* * *
115297 TTATAATAATTATTAAAATATTTAA
1 TTATAATAATAATTAAAAAATTAAA
*
115322 GTATAAT-ATAATTAATAAAATTAAA
1 TTATAATAATAATTAA-AAAATTAAA
*
115347 TTATATTAGATAAT
1 TTATAATA-ATAAT
115361 ATTATTATTC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
24 7 0.23
25 18 0.60
27 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (25 bp):
TTATAATAATAATTAAAAAATTAAA
Found at i:115380 original size:35 final size:36
Alignment explanation
Indices: 115300--115386 Score: 96
Period size: 33 Copynumber: 2.6 Consensus size: 36
115290 TTATTATTTA
*
115300 TAAT-AATTATTAAAATAT-TTAAGTATAATATAAT
1 TAATAAATTATTAAATTATATTAAGTATAATATAAT
*
115334 TAATAAA--ATTAAATTATATT-AG-ATAATATTAT
1 TAATAAATTATTAAATTATATTAAGTATAATATAAT
*
115366 TATTCAAATTATTAAATTATA
1 TAAT-AAATTATTAAATTATA
115387 AAATAATTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
32 12 0.27
33 14 0.31
34 6 0.13
35 13 0.29
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (36 bp):
TAATAAATTATTAAATTATATTAAGTATAATATAAT
Found at i:116337 original size:22 final size:22
Alignment explanation
Indices: 116290--116342 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
116280 TGAATCTAAT
* * *
116290 TAATATTTAAATATTAAATTAT
1 TAATATTAAAATATAAAATTAA
116312 TAATATTAAAATA-AAAATTAAA
1 TAATATTAAAATATAAAATT-AA
*
116334 TAATTTTAA
1 TAATATTAA
116343 TTTAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TAATATTAAAATATAAAATTAA
Found at i:116986 original size:20 final size:21
Alignment explanation
Indices: 116943--116986 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
116933 AATTTATTAT
* *
116943 TAAAATAATATAATTATTTGA
1 TAAAATAATATAATTATATAA
*
116964 TAAAATACTA-AATTATATAA
1 TAAAATAATATAATTATATAA
116984 TAA
1 TAA
116987 TACTATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
TAAAATAATATAATTATATAA
Found at i:117459 original size:17 final size:16
Alignment explanation
Indices: 117427--117468 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 16
117417 CCCCTTGATT
117427 TAATATTATTTTATAA
1 TAATATTATTTTATAA
117443 TAATATTATTATTATAA
1 TAATATTATT-TTATAA
117460 TAATTATTA
1 TAA-TATTA
117469 AATAATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.42
17 9 0.38
18 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATATTATTTTATAA
Found at i:117473 original size:14 final size:15
Alignment explanation
Indices: 117437--117478 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
117427 TAATATTATT
117437 TTATAATAAT-ATTA
1 TTATAATAATAATTA
*
117451 TTATTATAATAATTA
1 TTATAATAATAATTA
117466 TTA-AATAATAATT
1 TTATAATAATAATT
117479 TAAAATACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATAATAATAATTA
Found at i:117477 original size:17 final size:14
Alignment explanation
Indices: 117427--117475 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
117417 CCCCTTGATT
*
117427 TAATATTATT-TTA
1 TAATAATATTATTA
117440 TAATAATATTATTA
1 TAATAATATTATTA
*
117454 TTATAATAATTATTA
1 TAATAAT-ATTATTA
117469 -AATAATA
1 TAATAATA
117476 ATTTAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 10 0.32
14 14 0.45
15 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATAATATTATTA
Found at i:118304 original size:21 final size:19
Alignment explanation
Indices: 118286--118324 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
118276 TAATATAACT
118286 TATATTATAA-TATAAATAA
1 TATA-TATAAGTATAAATAA
118305 TATATATAAGTAT-AATAA
1 TATATATAAGTATAAATAA
118323 TA
1 TA
118325 CTACTAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
TATATATAAGTATAAATAA
Found at i:118312 original size:18 final size:18
Alignment explanation
Indices: 118256--118324 Score: 63
Period size: 17 Copynumber: 3.9 Consensus size: 18
118246 TATAATCTTA
* * *
118256 ATATGATATAACTAATTT
1 ATATAATATAAATAATAT
* *
118274 AT-TAATATAACTTATAT
1 ATATAATATAAATAATAT
118291 -TATAATATAAATAATAT
1 ATATAATATAAATAATAT
118308 ATATAAGTAT-AATAATA
1 ATATAA-TATAAATAATA
118325 CTACTAACAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
16 1 0.02
17 25 0.58
18 14 0.33
19 3 0.07
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (18 bp):
ATATAATATAAATAATAT
Found at i:118380 original size:15 final size:14
Alignment explanation
Indices: 118342--118443 Score: 59
Period size: 15 Copynumber: 7.2 Consensus size: 14
118332 CATAAGACTT
118342 ATATTAATAATTCATA
1 ATATT-ATAATT-ATA
*
118358 TTATTATAATTATA
1 ATATTATAATTATA
* *
118372 ATATGTATAGTTATT
1 ATAT-TATAATTATA
* *
118387 ATA-CATACTTATA
1 ATATTATAATTATA
* *
118400 ATAGTCT-ATT-T-
1 ATATTATAATTATA
118411 ATATTATAATTATAA
1 ATATTATAATTAT-A
*
118426 ATATCATAAATTATA
1 ATATTAT-AATTATA
118441 ATA
1 ATA
118444 ATTTATAAGG
Statistics
Matches: 66, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
11 5 0.08
12 4 0.06
13 13 0.20
14 7 0.11
15 27 0.41
16 10 0.15
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (14 bp):
ATATTATAATTATA
Found at i:118589 original size:12 final size:12
Alignment explanation
Indices: 118572--118695 Score: 58
Period size: 12 Copynumber: 11.0 Consensus size: 12
118562 ATAATAAATC
*
118572 ATATTATTGTTA
1 ATATTATTATTA
118584 ATATTATTATTA
1 ATATTATTATTA
*
118596 ATTTTATTACTT-
1 ATATTATTA-TTA
118608 A-A--ATTA-TA
1 ATATTATTATTA
**
118616 ATATTAAAATTGA
1 ATATTATTATT-A
118629 A-ATTATT-TTA
1 ATATTATTATTA
118639 AT-TTA-TATTA
1 ATATTATTATTA
118649 ATAAATTATTTATTA
1 AT--ATTA-TTATTA
*
118664 AT-TTA--ATAA
1 ATATTATTATTA
118673 ATATTATTATT-
1 ATATTATTATTA
*
118684 ATAATATTATTA
1 ATATTATTATTA
118696 CCGAATATTA
Statistics
Matches: 84, Mismatches: 10, Indels: 36
0.65 0.08 0.28
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 11 0.13
10 13 0.15
11 14 0.17
12 30 0.36
13 7 0.08
15 7 0.08
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.54
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:118683 original size:25 final size:25
Alignment explanation
Indices: 118628--118675 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
118618 ATTAAAATTG
*
118628 AAATTA-TT-TTAATTTATATTAAT
1 AAATTATTTATTAATTTATATAAAT
118651 AAATTATTTATTAATTTA-ATAAAT
1 AAATTATTTATTAATTTATATAAAT
118675 A
1 A
118676 TTATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 8 0.36
25 8 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
AAATTATTTATTAATTTATATAAAT
Found at i:119223 original size:21 final size:20
Alignment explanation
Indices: 119201--119248 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
119191 TAATAATTAT
119201 TTTAAATATATATAA-TCAAA
1 TTTAAAT-TATATAAGTCAAA
* *
119221 TTTATATTATATAAGTCTAA
1 TTTAAATTATATAAGTCAAA
119241 TTTAAATT
1 TTTAAATT
119249 TTAAGTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTAAATTATATAAGTCAAA
Found at i:120239 original size:15 final size:16
Alignment explanation
Indices: 120221--120289 Score: 58
Period size: 15 Copynumber: 4.6 Consensus size: 16
120211 TAAATTAATG
120221 AATTTATTAATATAT-
1 AATTTATTAATATATA
*
120236 AATTAATTAATA-ATA
1 AATTTATTAATATATA
* *
120251 AATCATATT-AT-TATC
1 AAT-TTATTAATATATA
*
120266 ATTTTA-TAATATATA
1 AATTTATTAATATATA
120281 AATTTATTA
1 AATTTATTA
120290 TTGTTTATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 11
0.68 0.14 0.19
Matches are distributed among these distances:
13 1 0.03
14 6 0.15
15 28 0.70
16 5 0.12
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTATTAATATATA
Found at i:120424 original size:17 final size:18
Alignment explanation
Indices: 120404--120453 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 18
120394 AATATAAGAC
120404 TATTAATAATAATA-AAT
1 TATTAATAATAATATAAT
120421 TATTAATAATACAATATAAT
1 TATTAATAAT--AATATAAT
*
120441 TATAAATAATAAT
1 TATTAATAATAAT
120454 TATTTAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 10 0.34
18 3 0.10
19 4 0.14
20 12 0.41
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TATTAATAATAATATAAT
Found at i:121007 original size:17 final size:18
Alignment explanation
Indices: 120987--121023 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
120977 TATAACAGAA
*
120987 TATTAATTA-CTTAATAT
1 TATTAATTATCTAAATAT
121004 TATTAATTATCTAAATAT
1 TATTAATTATCTAAATAT
121022 TA
1 TA
121024 GTTTGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTAATTATCTAAATAT
Found at i:121085 original size:13 final size:13
Alignment explanation
Indices: 121069--121171 Score: 62
Period size: 13 Copynumber: 8.3 Consensus size: 13
121059 TTAATAAAAT
121069 TAATATTATTATA
1 TAATATTATTATA
*
121082 TAAT-TAAATTA-A
1 TAATAT-TATTATA
*
121094 TAATATAATTATA
1 TAATATTATTATA
121107 TAATA-T-TTAT-
1 TAATATTATTATA
*
121117 T-ATATTATAATA
1 TAATATTATTATA
121129 -AATATTTAATT-TA
1 TAATA-TT-ATTATA
*
121142 -AATATTTAATATA
1 TAATA-TTATTATA
*
121155 TAATAATATTATA
1 TAATATTATTATA
121168 TAAT
1 TAAT
121172 TAAATAAATT
Statistics
Matches: 72, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
9 3 0.04
10 2 0.03
11 7 0.10
12 16 0.22
13 38 0.53
14 6 0.08
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATATTATTATA
Found at i:121085 original size:22 final size:25
Alignment explanation
Indices: 121060--121111 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 25
121050 TTCAATTGTT
121060 TAATAAAATTAAT-AT-T-ATTATA
1 TAATAAAATTAATAATATAATTATA
*
121082 TAATTAAATTAATAATATAATTATA
1 TAATAAAATTAATAATATAATTATA
121107 TAATA
1 TAATA
121112 TTTATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 12 0.48
23 2 0.08
24 1 0.04
25 10 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATAAAATTAATAATATAATTATA
Found at i:121088 original size:17 final size:17
Alignment explanation
Indices: 121060--121104 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
121050 TTCAATTGTT
*
121060 TAATAAAATTAATATT-A
1 TAATATAATTAA-ATTAA
*
121077 TTATATAATTAAATTAA
1 TAATATAATTAAATTAA
121094 TAATATAATTA
1 TAATATAATTA
121105 TATAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATAATTAAATTAA
Found at i:121133 original size:34 final size:34
Alignment explanation
Indices: 121091--121195 Score: 110
Period size: 34 Copynumber: 3.1 Consensus size: 34
121081 ATAATTAAAT
*
121091 TAAT-AATATAATTATATAATATTTATTATATTA
1 TAATAAATATAATTATATAATATTTAATATATTA
*
121124 TAATAAATATTTAATT-TA-AATATTTAATATATAA
1 TAATAAATA--TAATTATATAATATTTAATATATTA
* * *
121158 TAATATTATATAATTAAATAA-ATTAAATATATTA
1 TAATA-AATATAATTATATAATATTTAATATATTA
121192 TAAT
1 TAAT
121196 GATAAACATT
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
33 9 0.15
34 39 0.65
35 7 0.12
36 5 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (34 bp):
TAATAAATATAATTATATAATATTTAATATATTA
Found at i:121182 original size:17 final size:17
Alignment explanation
Indices: 121076--121182 Score: 64
Period size: 17 Copynumber: 6.2 Consensus size: 17
121066 AATTAATATT
*
121076 ATTATATAATTAAATTA
1 ATTATATAATTAAATAA
* *
121093 ATAATATAATTATATAA
1 ATTATATAATTAAATAA
121110 TATT-TATTATATTATAATAA
1 -ATTATA-TA-ATTA-AATAA
*
121130 A-TATTTAATT---TAA
1 ATTATATAATTAAATAA
*
121143 A-TATTTAATATATAATAA
1 ATTATATAAT-TA-AATAA
121161 TATTATATAATTAAATAA
1 -ATTATATAATTAAATAA
121179 ATTA
1 ATTA
121183 AATATATTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 24
0.70 0.07 0.24
Matches are distributed among these distances:
13 12 0.17
14 1 0.01
17 23 0.32
18 15 0.21
19 9 0.13
20 11 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATATAATTAAATAA
Found at i:121247 original size:22 final size:21
Alignment explanation
Indices: 121203--121247 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
121193 AATGATAAAC
*
121203 ATTTACTTATTAATTATTATA
1 ATTTACTTATTAATAATTATA
121224 ATTTAACTTATTATATAATT-TA
1 ATTT-ACTTATTA-ATAATTATA
121246 AT
1 AT
121248 ATATAATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 12 0.57
23 5 0.24
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTACTTATTAATAATTATA
Found at i:121281 original size:19 final size:21
Alignment explanation
Indices: 121243--121287 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
121233 ATTATATAAT
*
121243 TTAATATATAATAACTTATTA
1 TTAATATATAATAACGTATTA
121264 TTAATATAT-A-AACGTATTA
1 TTAATATATAATAACGTATTA
121283 TTAAT
1 TTAAT
121288 TGAATTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.57
20 1 0.04
21 9 0.39
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAATATATAATAACGTATTA
Found at i:121297 original size:61 final size:59
Alignment explanation
Indices: 121217--121334 Score: 134
Period size: 61 Copynumber: 2.0 Consensus size: 59
121207 ACTTATTAAT
* * * *
121217 TATTATAATTTAACTTATT-ATATAATTTAATATA-TAATAACTTATTATTAATATATAAACG
1 TATTATAATTGAACTTATTAATA-AAATTAATAAACT-ATAA-TTAATATTAATA-ATAAACG
121278 TATTATTAATTGAA-TTATTAATAAAATTAATAAACTATAATTAATATTAATAATAAA
1 TATTA-TAATTGAACTTATTAATAAAATTAATAAACTATAATTAATATTAATAATAAA
121335 TTTAATGATA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
59 5 0.10
60 11 0.22
61 23 0.46
62 11 0.22
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (59 bp):
TATTATAATTGAACTTATTAATAAAATTAATAAACTATAATTAATATTAATAATAAACG
Found at i:121752 original size:23 final size:21
Alignment explanation
Indices: 121712--121753 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
121702 ACTAATTTAT
121712 TCTATTAATTAATGATTATAA
1 TCTATTAATTAATGATTATAA
*
121733 TCTATTCATATTAATTATTAT
1 TCTATT-A-ATTAATGATTAT
121754 TAATAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (21 bp):
TCTATTAATTAATGATTATAA
Found at i:121915 original size:23 final size:23
Alignment explanation
Indices: 121888--121938 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
121878 CTTATTTAGT
*
121888 TTTATAAAACAATTTTTT-ATTAA
1 TTTATAAAAC-ATTTTTTAAATAA
* *
121911 TTTATTAATCATTTTTTAAATAA
1 TTTATAAAACATTTTTTAAATAA
121934 TTTAT
1 TTTAT
121939 TTAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTATAAAACATTTTTTAAATAA
Found at i:122099 original size:24 final size:24
Alignment explanation
Indices: 122069--122115 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
122059 TTATGTATTA
*
122069 TAATTAATAGATTATAATTAATTC
1 TAATTAATAGATTAGAATTAATTC
*
122093 TAATTAATTGATTAGAATTAATT
1 TAATTAATAGATTAGAATTAATT
122116 ATTTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (24 bp):
TAATTAATAGATTAGAATTAATTC
Found at i:122250 original size:19 final size:22
Alignment explanation
Indices: 122226--122269 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
122216 ATAATTATAC
122226 TATTAATTA-TTA-AATTT-AT
1 TATTAATTATTTAGAATTTAAT
122245 TATTAATTATTTAGAATTTAAT
1 TATTAATTATTTAGAATTTAAT
122267 TAT
1 TAT
122270 AAAATATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 3 0.14
21 5 0.23
22 5 0.23
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTAATTATTTAGAATTTAAT
Found at i:122268 original size:34 final size:34
Alignment explanation
Indices: 122228--122292 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
122218 AATTATACTA
* * *
122228 TTAATTATTAAATTTATT-ATTAATTATTTAGAAT
1 TTAATTATAAAATATATTCA-TAATAATTTAGAAT
122262 TTAATTATAAAATATATTCATAATAATTTAG
1 TTAATTATAAAATATATTCATAATAATTTAG
122293 TATGTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (34 bp):
TTAATTATAAAATATATTCATAATAATTTAGAAT
Found at i:122389 original size:11 final size:11
Alignment explanation
Indices: 122373--122416 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
122363 TACTAATAAT
122373 TAATATTATTA
1 TAATATTATTA
122384 TAATATAATAATTA
1 TAATAT--T-ATTA
*
122398 TAATATTTTTA
1 TAATATTATTA
122409 TAATATTA
1 TAATATTA
122417 GTAATTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 1 0.04
14 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATATTATTA
Found at i:122409 original size:25 final size:23
Alignment explanation
Indices: 122366--122414 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
122356 ATAATTTTAC
122366 TAATAATTAATATTATTATAATA
1 TAATAATTAATATTATTATAATA
*
122389 TAATAATTATAATATTTTTATAATA
1 TAATAA-T-TAATATTATTATAATA
122414 T
1 T
122415 TAGTAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.26
24 1 0.04
25 16 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATAATTAATATTATTATAATA
Found at i:122411 original size:52 final size:55
Alignment explanation
Indices: 122312--122421 Score: 129
Period size: 56 Copynumber: 2.0 Consensus size: 55
122302 TTAATAATAT
* *
122312 ATAAATAATATTATATGATATAACTAATTAAAATAGTAATTTATATAATTTTACTA
1 ATAAATAATATTATATAATATAACTAATTAAAATAGT-ATTTATATAATATTACTA
* * *
122368 ATAATTAATATTATTATAATATAA-TAATTATAATA-T-TTT-TATAATATTAGTA
1 ATAAATAATATTA-TATAATATAACTAATTAAAATAGTATTTATATAATATTACTA
122420 AT
1 AT
122422 TTTATTATCC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
52 13 0.27
53 3 0.06
55 1 0.02
56 22 0.46
57 9 0.19
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (55 bp):
ATAAATAATATTATATAATATAACTAATTAAAATAGTATTTATATAATATTACTA
Found at i:122758 original size:19 final size:18
Alignment explanation
Indices: 122734--122772 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
122724 TGTTTGAAAT
122734 ATTAATAATTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
122753 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
122771 AT
1 AT
122773 AAAATAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:122778 original size:19 final size:19
Alignment explanation
Indices: 122737--122790 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
122727 TTGAAATATT
*
122737 AATAATTAATATTTTAATT
1 AATAATTAATATTTTAATA
*
122756 AATAATTTAT-TTTTAATAA
1 AATAATTAATATTTTAAT-A
122775 AATAACATTAATATTT
1 AAT-A-ATTAATATTT
122791 GACTATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 7 0.25
19 12 0.43
20 1 0.04
21 5 0.18
22 3 0.11
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
AATAATTAATATTTTAATA
Found at i:122786 original size:28 final size:29
Alignment explanation
Indices: 122752--122836 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 29
122742 TTAATATTTT
*
122752 AATTAATAATTTATTTTTAATAAAATAAC
1 AATTAATAATTTAATTTTAATAAAATAAC
* * *
122781 -ATTAAT-ATTTGACTATTAATAACA-AAC
1 AATTAATAATTT-AATTTTAATAAAATAAC
* * *
122808 AATTATTAACTTAATTATAATAAAATAAC
1 AATTAATAATTTAATTTTAATAAAATAAC
122837 TATATACGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
27 7 0.16
28 30 0.70
29 6 0.14
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.40
Consensus pattern (29 bp):
AATTAATAATTTAATTTTAATAAAATAAC
Found at i:123307 original size:13 final size:14
Alignment explanation
Indices: 123282--123310 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
123272 TAAATAGTTA
123282 AAATTAATATTAAT
1 AAATTAATATTAAT
123296 AAATTAAT-TTAAT
1 AAATTAATATTAAT
123309 AA
1 AA
123311 GAATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTAATATTAAT
Found at i:123338 original size:15 final size:15
Alignment explanation
Indices: 123327--123356 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
123317 GAAAATACTT
123327 AATATTATAATAATA
1 AATATTATAATAATA
123342 AATATTATAATAATA
1 AATATTATAATAATA
123357 TGTAGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AATATTATAATAATA
Found at i:123494 original size:17 final size:18
Alignment explanation
Indices: 123450--123505 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
123440 TTAGATTACT
*
123450 TTATTAATATATAATATAA
1 TTATTAATAAATAAT-TAA
123469 -TATTAAT-AATAGATTAA
1 TTATTAATAAATA-ATTAA
123486 TTATT-ATAAATAATTAA
1 TTATTAATAAATAATTAA
123503 TTA
1 TTA
123506 CAATTATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 16 0.48
18 17 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TTATTAATAAATAATTAA
Found at i:123666 original size:21 final size:21
Alignment explanation
Indices: 123640--123680 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
123630 ATTAATATTA
123640 AATATTAAAATCAA-TAAATAG
1 AATATTAAAAT-AATTAAATAG
*
123661 AATATTTAAATAATTAAATA
1 AATATTAAAATAATTAAATA
123681 ATATTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
AATATTAAAATAATTAAATAG
Found at i:124881 original size:18 final size:18
Alignment explanation
Indices: 124856--124899 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
124846 ATTTACTATA
*
124856 ATTATAATAATATTAATTT
1 ATTATAATAATA-CAATTT
124875 A-TATAATAATACAATTT
1 ATTATAATAATACAATTT
124892 ATTATAAT
1 ATTATAAT
124900 TATTATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 16 0.70
19 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTATAATAATACAATTT
Found at i:124924 original size:22 final size:22
Alignment explanation
Indices: 124894--124939 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
124884 TACAATTTAT
124894 TATAATTATTATTAAAATAT-AA
1 TATAATTATTATT-AAATATGAA
* *
124916 TATATTTATTGTTAAATATGAA
1 TATAATTATTATTAAATATGAA
124938 TA
1 TA
124940 GATTATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
TATAATTATTATTAAATATGAA
Found at i:124945 original size:21 final size:21
Alignment explanation
Indices: 124898--124945 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
124888 ATTTATTATA
*
124898 ATTATTATTAAAATATAATAT
1 ATTATTATTAAAATATAATAG
*
124919 ATTTATTGTT-AAATATGAATAG
1 A-TTATTATTAAAATAT-AATAG
124941 ATTAT
1 ATTAT
124946 AATCATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
ATTATTATTAAAATATAATAG
Found at i:125558 original size:24 final size:24
Alignment explanation
Indices: 125531--125579 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
125521 GTATTAATTT
125531 TAATACAATATATAATAATATATA
1 TAATACAATATATAATAATATATA
* * * *
125555 TAATATAATATTTATTATTATATA
1 TAATACAATATATAATAATATATA
125579 T
1 T
125580 TAATTAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
TAATACAATATATAATAATATATA
Found at i:127426 original size:181 final size:181
Alignment explanation
Indices: 127073--127801 Score: 622
Period size: 181 Copynumber: 4.1 Consensus size: 181
127063 TACTGTTAAA
* * * *
127073 ACTAATTTATTAATACTTCAAAAAATT-ATAAG--AG--ATTTAGAAAAT-AATTCTATTTACCA
1 ACTAATTTATTAATA-TTTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATT-TATTTATCA
* * * * * * *
127132 AACCAGTTCAAATAAATATAACTATTTGAACAATTATTTATTTCAAATTATTATTACTTTTTGTT
64 AACCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTT
* * * * * * * *
127197 TTGTCA-TAAAGTAATTGTTTTTGTTAAGATAAGTTTGTTCAAAATAAAATAAT
129 TTGTCATTAAAGCAATTG-TTTTGTTCATACAAGCTTATTTAGAATAAAATAAT
* * * *
127250 ACTAATTTATTAATATTTAGAAAATTAATTAGTAAGAGATTTAAAAAGTAAATTTGTTTATCAAA
1 ACTAATTTATTAATATTTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTATTTATCAAA
* * ** * *
127315 CCATTTCAAATAATTTTGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTATTTT
66 CCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * * **
127380 GTCATTAAA-CAATTGGTTATGTTCATGCTATTTTATTTAGAATAAAATAAT
131 GTCATTAAAGCAATT-GTTTTGTTCATACAAGCTTATTTAGAATAAAATAAT
* * * * * * * * * * **
127431 ATTAATTTAATAATATTTTGAAACTTAATAACTAGGAAAATTAAAAAATAAATCTAATTGTTGAA
1 ACTAATTTATTAATATTTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTATTTATCAAA
* * * * * * * * *
127496 CTAGTTAAAATAGTTACGACGATATGAATGATTATCTATTTTAAATCATAATGACCTTTT-TTTT
66 CCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * *
127560 GT--TGTAAAGCAATTGTTTTGTTCGTACAAGCTTATTTTGATTAAAATAAT
131 GTCAT-TAAAGCAATTGTTTTGTTCATACAAGCTTATTTAGAATAAAATAAT
* *
127610 ACTAATTTAATAATATTTTA-AAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTA-CAA
1 ACTAATTTATTAATA-TTTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTATTTATCAA
* ** * ** * * *
127673 ATCAGTTCAAATGGTTAAGACTATTAAAATAATTATCTATTTAAAATCGTTTTGACCTTTTGTTT
65 ACCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * * * *
127738 AGTTA-TAAAACAATTGTTCTAGTTCATACAAGCTTATTTAGAATAAATTAAT
130 TGTCATTAAAGCAATTGTT-TTGTTCATACAAGCTTATTTAGAATAAAATAAT
*
127790 AATAATTTATTA
1 ACTAATTTATTA
127802 GCATTCAAAA
Statistics
Matches: 436, Mismatches: 101, Indels: 27
0.77 0.18 0.05
Matches are distributed among these distances:
176 9 0.02
177 19 0.04
178 49 0.11
179 97 0.22
180 52 0.12
181 201 0.46
182 9 0.02
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (181 bp):
ACTAATTTATTAATATTTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTATTTATCAAA
CCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
GTCATTAAAGCAATTGTTTTGTTCATACAAGCTTATTTAGAATAAAATAAT
Found at i:128642 original size:22 final size:22
Alignment explanation
Indices: 128614--128661 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
128604 TATAGAATTA
* *
128614 ATTAATAATAATTAATATTGAT
1 ATTAATAATAAATAATATTAAT
128636 ATTAATAATAAATAATATTAAT
1 ATTAATAATAAATAATATTAAT
128658 ATTA
1 ATTA
128662 TTATTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTAATAATAAATAATATTAAT
Found at i:128775 original size:22 final size:24
Alignment explanation
Indices: 128727--128781 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
128717 ATAATATTTT
*
128727 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
128751 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
128773 ATAACTATT
1 ATAAATATT
128782 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:129914 original size:177 final size:178
Alignment explanation
Indices: 129179--130153 Score: 757
Period size: 177 Copynumber: 5.5 Consensus size: 178
129169 TTTTTAATAG
* * * **
129179 TTATGATC-TTTTGTTTTATCATAAAATAATTGTTTCTA-TTCATACAAGTTTATTCAAAATAAA
1 TTATGATCATTTTGTTTT-TCATAAAACAATTGTTTC-AGTTCATAAAAGCTTATTTGAAATAAA
* * * * *
129242 ATAATACTACTTTATTAATATTTTG-CAAATTAATAGGTAGGAGATTTAAAAAATAAATTTGTTT
64 ATAATACTAATTTATTAATATTTCGAAAAATTAATA---A-GAGATTTAAAAAACAAATCTGTTT
* * * * **
129306 A-TCGAACAAGTTCAAATA-ATCATGTCCATTAGAACAATTATCTTTTTCAAATTG
125 ACT-AAACAAGTTCAAATAGAT-ATGACTATTAGAACAATTATCTATTTCAAATCA
* **
129360 TTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATATAGAA--TTATTCAAAATAA
1 TTATGATCATTTTGTTTT-TCATAAAACAATTGTTTCAGTTCATA-A-AAGCTTATTTGAAATAA
** * * * *
129422 AATAATTTTGATTTATTAATATTT-TAAAAATTAATAAGTGATTT-AAAAACTAAATCTATTTAC
63 AATAATACTAATTTATTAATATTTCGAAAAATTAATAAGAGATTTAAAAAAC-AAATCTGTTTAC
* * * *
129485 TAAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCA
127 TAAACAAGTTCAAATAGATATGACTATTAGAACAATTATCTATTTCAAATCA
* * ** * * *
129537 TAATGATC-TTTAT-TTTTTCATACAACAATTGTTTCCTTTCATACAAGCTTATTTGGATTAAAA
1 TTATGATCATTT-TGTTTTTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGAAATAAAA
* * * * *
129600 TGATACTAATTTAATAATATTTC-AAAAATTAATAAGAGATTTAAAAAATAAATATG-TTAGCCA
65 TAATACTAATTTATTAATATTTCGAAAAATTAATAAGAGATTTAAAAAACAAATCTGTTTA-CTA
* * * ** *
129663 AACTAGCTCAAATAGTTAAAACTATTAGAATAATTATCTATTTCAAATCA
129 AACAAGTTCAAATAGATATGACTATTAGAACAATTATCTATTTCAAATCA
* * * * * * *
129713 TTCT-ATCCTTTTGTTTAGTCATAAAATAACTATTTCAGTTCATAAAAGCTTATTTGGAATAAAA
1 TTATGATCATTTTGTTT-TTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGAAATAAAA
* * *
129777 TAATACTAATTTATTAACA-TTCGAAAAATTAAAGCAAGTGATTTAAAAAACAAATCTGTTTACT
65 TAATACTAATTTATTAATATTTCGAAAAATT-AA-TAAGAGATTTAAAAAACAAATCTGTTTACT
* * *
129841 AAACAATTTCAAATAGATATGACTATTTA-AACAATTATCTATTTAAAATTA
128 AAACAAGTTCAAATAGATATGACTA-TTAGAACAATTATCTATTTCAAATCA
* * *
129892 TTTTGA-CATTTT-TTTTTCATAAAACAATTGTTTCAGTTAATAAAAACTTATTTGAAATAAAAT
1 TTATGATCATTTTGTTTTTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGAAATAAAAT
* * * * *
129955 AATACTACTTTATTAATATTTC-AAAATTATTAGTCAAGAGATTT-AAAAACTAAAGCTATTT-T
66 AATACTAATTTATTAATATTTCGAAAA--ATTAAT-AAGAGATTTAAAAAAC-AAATCTGTTTAC
* * * * * * *
130017 TCAAAGC-AGTTCTAATAGTTATGATTATTTGAACAAATAT-TAATCTCAAATCG
127 T-AAA-CAAGTTCAAATAGATATGACTATTAGAACAATTATCT-ATTTCAAATCA
** * * * *
130070 TTATGAT-A-TTTGTTTTGTCATAAAACAATT-TTT-TTTATCATATAAGCTGA-TTCAGATAAA
1 TTATGATCATTTTGTTTT-TCATAAAACAATTGTTTCAGT-TCATAAAAGCTTATTTGAAAT-AA
*
130130 AATAATACTAATTTAATAATATTT
63 AATAATACTAATTTATTAATATTT
130154 AAGTTAAATA
Statistics
Matches: 641, Mismatches: 115, Indels: 79
0.77 0.14 0.09
Matches are distributed among these distances:
174 2 0.00
175 7 0.01
176 136 0.21
177 212 0.33
178 110 0.17
179 84 0.13
180 8 0.01
181 80 0.12
183 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (178 bp):
TTATGATCATTTTGTTTTTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGAAATAAAAT
AATACTAATTTATTAATATTTCGAAAAATTAATAAGAGATTTAAAAAACAAATCTGTTTACTAAA
CAAGTTCAAATAGATATGACTATTAGAACAATTATCTATTTCAAATCA
Found at i:130223 original size:19 final size:19
Alignment explanation
Indices: 130201--130238 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
130191 ATTTAAATTA
130201 ATTAATTAATATAATATAT
1 ATTAATTAATATAATATAT
* *
130220 ATTATTTAATATATTATAT
1 ATTAATTAATATAATATAT
130239 TGTAAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTAATTAATATAATATAT
Found at i:130701 original size:22 final size:22
Alignment explanation
Indices: 130669--130711 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
130659 TGTAGACAAT
*
130669 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
130691 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
130712 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:130792 original size:11 final size:11
Alignment explanation
Indices: 130763--130801 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
130753 GTTTAAAATT
*
130763 ATTAA-AATTA
1 ATTAATAATAA
130773 ATTAATAATAA
1 ATTAATAATAA
*
130784 ATTACTAATAA
1 ATTAATAATAA
130795 ATTAATA
1 ATTAATA
130802 TTTATACTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTAATAATAA
Found at i:131018 original size:19 final size:17
Alignment explanation
Indices: 130982--131021 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
130972 ATAATTAACG
*
130982 AATATAATATTTTTATT
1 AATATAATATTATTATT
130999 AATATAAATATATATTATT
1 AATAT-AATAT-TATTATT
131018 AATA
1 AATA
131022 ATTAATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 5 0.25
19 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATATAATATTATTATT
Found at i:131634 original size:14 final size:14
Alignment explanation
Indices: 131617--131677 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
131607 ATGATTATTC
*
131617 AATTATATAATACT
1 AATTATATAATAAT
* *
131631 AATTTTAT-CTAAT
1 AATTATATAATAAT
*
131644 AATTTTATAATAAT
1 AATTATATAATAAT
*
131658 AAATATATTAATTAAT
1 AATTATA-TAA-TAAT
131674 AATT
1 AATT
131678 GTACTTAGGA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
13 11 0.30
14 16 0.43
15 3 0.08
16 7 0.19
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTATATAATAAT
Found at i:131673 original size:27 final size:27
Alignment explanation
Indices: 131617--131669 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
131607 ATGATTATTC
* * *
131617 AATTATATAATACTAATTTTATCTAAT
1 AATTATATAATAATAAATATATCTAAT
*
131644 AATTTTATAATAATAAATATAT-TAAT
1 AATTATATAATAATAAATATATCTAAT
131670 TAATAATTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (27 bp):
AATTATATAATAATAAATATATCTAAT
Found at i:132299 original size:177 final size:179
Alignment explanation
Indices: 131880--132451 Score: 638
Period size: 181 Copynumber: 3.2 Consensus size: 179
131870 AAATGGTTAA
* * * * * * * *
131880 GACTATTAGAATAATTATATACTTCAAATCATTTTGACCATTT-TTTTGTCATAAAACAATTATT
1 GACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
* * * *
131944 TCAATTCATACAAGCTTATTCAGAATAAATTAATACTAATTTATTAACATTTGAAAAATTAATAA
66 TCAATTAATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTT-CAAAATTAATAA
* *
132009 GAAAGAGATTTAAAAAATAAATCTGTTTACCAAACAAGTTCAAATAGTTAT
130 G-AACAGATTTAAAAAATAAATCTGTTTACCAAACAAGTTCAAATAATTAT
* * * * * *
132060 TATTATTTGAACAATTGTCTATTTTAAAAT-GTTATAACCTTTTAATTTGTCATAAAACAATTGT
1 GACTATTTGAACAATTATCTA-TTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGT
* * * *
132124 TTCAGTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAATATTTCCTAAATTAAT
65 TTCAATTAATACAAGCTTA-TTCAGAATAAAATAATACTAATTTATTAATATTT-CAAAATTAAT
* *
132188 AAG-A-A-ATTTAAAAAATAAATCTCTTTACCAAATC-AGTTAAAATAATTAT
128 AAGAACAGATTTAAAAAATAAATCTGTTTACCAAA-CAAGTTCAAATAATTAT
* * * *
132237 GGCCATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAATACAATTGTT
1 GACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
** * * *
132302 T-TTTTATCATACAAGCTTATTCAAAATAAAATAATACTAATTGATTAATATTTCAAAAATAATA
66 TCAATTA--ATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAATTAATA
* * * *
132366 GGTAACAGATTTAAATAATAAATCAGTTTACCAAACTAGTTCAAATAATTAT
129 AG-AACAGATTTAAAAAATAAATCTGTTTACCAAACAAGTTCAAATAATTAT
* *
132418 GACTATTTGAACAATTATCAATCTCAAATCATTA
1 GACTATTTGAACAATTATCTATTTCAAATCATTA
132452 AAATTTTTGT
Statistics
Matches: 325, Mismatches: 54, Indels: 25
0.80 0.13 0.06
Matches are distributed among these distances:
176 10 0.03
177 98 0.30
178 41 0.13
179 2 0.01
180 26 0.08
181 147 0.45
182 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (179 bp):
GACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
TCAATTAATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAG
AACAGATTTAAAAAATAAATCTGTTTACCAAACAAGTTCAAATAATTAT
Found at i:132637 original size:17 final size:18
Alignment explanation
Indices: 132599--132637 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
132589 AATAACTAAT
*
132599 TATTAAAAAAATTGTATT
1 TATTAAAAAAATTGTATA
*
132617 TATTAAAATAATT-TATA
1 TATTAAAAAAATTGTATA
132634 TATT
1 TATT
132638 TATTTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TATTAAAAAAATTGTATA
Found at i:132736 original size:18 final size:18
Alignment explanation
Indices: 132710--132788 Score: 55
Period size: 17 Copynumber: 4.6 Consensus size: 18
132700 TAGTGACATA
132710 TTAATTTAATTATATATAT
1 TTAA-TTAATTATATATAT
132729 TTAATTAA-TA-ATA-AT
1 TTAATTAATTATATATAT
132744 TATAA-TAATTATA-ATAAT
1 T-TAATTAATTATATAT-AT
* *
132762 TT-ATAAATTAT-TATTT
1 TTAATTAATTATATATAT
132778 ATTAATTAATT
1 -TTAATTAATT
132789 TGAATATATG
Statistics
Matches: 48, Mismatches: 3, Indels: 19
0.69 0.04 0.27
Matches are distributed among these distances:
15 6 0.12
16 11 0.23
17 14 0.29
18 13 0.27
19 4 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAATTAATTATATATAT
Found at i:132750 original size:9 final size:9
Alignment explanation
Indices: 132730--132767 Score: 58
Period size: 9 Copynumber: 4.0 Consensus size: 9
132720 TATATATATT
132730 TAATTAATAA
1 TAATT-ATAA
132740 TAATTATAA
1 TAATTATAA
132749 TAATTATAA
1 TAATTATAA
132758 TAATTTATAA
1 TAA-TTATAA
132768 ATTATTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.59
10 11 0.41
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TAATTATAA
Found at i:133078 original size:20 final size:20
Alignment explanation
Indices: 133053--133093 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
133043 AATAGATAAT
133053 AATTAA-CAAAATTATTCATA
1 AATTAATCAAAATTATT-ATA
*
133073 AATTAATCAATATTATTATA
1 AATTAATCAAAATTATTATA
133093 A
1 A
133094 TATATTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTAATCAAAATTATTATA
Found at i:133178 original size:15 final size:15
Alignment explanation
Indices: 133160--133198 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
133150 AAATATATTT
133160 ATACTAATATAAATA
1 ATACTAATATAAATA
* *
133175 ATACTAATTTATATA
1 ATACTAATATAAATA
*
133190 ATAATAATA
1 ATACTAATA
133199 ATTTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (15 bp):
ATACTAATATAAATA
Found at i:133194 original size:18 final size:19
Alignment explanation
Indices: 133166--133204 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
133156 ATTTATACTA
*
133166 ATATAAATAATACTAATTT
1 ATATAAATAATAATAATTT
133185 ATAT-AATAATAATAATTT
1 ATATAAATAATAATAATTT
133203 AT
1 AT
133205 TATTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATAAATAATAATAATTT
Found at i:134103 original size:23 final size:23
Alignment explanation
Indices: 134074--134164 Score: 91
Period size: 23 Copynumber: 4.0 Consensus size: 23
134064 ATAAATTAAT
*
134074 TTAAATATATAAATTATTAATTA
1 TTAAATATATAATTTATTAATTA
* *
134097 TTAAATATTTAATTTATTAATGA
1 TTAAATATATAATTTATTAATTA
134120 TT--ATAT-TAATTTATTAA-TA
1 TTAAATATATAATTTATTAATTA
*
134139 TTAATAAATATATATTTATTGAATTA
1 TTAA-ATATATA-ATTTATT-AATTA
134165 ATTGATATAA
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
19 3 0.05
20 11 0.20
21 4 0.07
22 3 0.05
23 24 0.43
24 7 0.12
25 2 0.04
26 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAAATATATAATTTATTAATTA
Found at i:134115 original size:16 final size:16
Alignment explanation
Indices: 134090--134140 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
134080 ATATAAATTA
134090 TTAA-TTATTAAATAT
1 TTAATTTATTAAATAT
134105 TTAATTTATTAATGATTAT
1 TTAATTTATTAA--A-TAT
134124 ATTAATTTATT-AATAT
1 -TTAATTTATTAAATAT
134140 T
1 T
134141 AATAAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 5 0.16
16 10 0.32
17 1 0.03
18 1 0.03
19 4 0.13
20 10 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TTAATTTATTAAATAT
Found at i:134130 original size:20 final size:19
Alignment explanation
Indices: 134039--134141 Score: 76
Period size: 19 Copynumber: 5.5 Consensus size: 19
134029 ATTGTATTAT
*
134039 TTAATTTTATATTAATTTAA
1 TTAATATTATATTAATTT-A
* *
134059 CTAATA-TAAATTAATTTA
1 TTAATATTATATTAATTTA
134077 --AATA-TATA--AA-TTA
1 TTAATATTATATTAATTTA
134090 TTAATTATTAAATATTTAATTTA
1 TTAA-TATT--ATA-TTAATTTA
134113 TTAATGATTATATTAATTTA
1 TTAAT-ATTATATTAATTTA
134133 TTAATATTA
1 TTAATATTA
134142 ATAAATATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
13 3 0.04
14 2 0.03
15 2 0.03
16 9 0.13
17 1 0.01
18 1 0.01
19 17 0.25
20 17 0.25
21 3 0.04
22 3 0.04
23 10 0.15
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (19 bp):
TTAATATTATATTAATTTA
Found at i:134666 original size:180 final size:180
Alignment explanation
Indices: 134252--134919 Score: 594
Period size: 181 Copynumber: 3.7 Consensus size: 180
134242 TAATATCATT
* * * * * **
134252 AATAATACTAATTTATTAATATTTAAAAAATTAATCAGTAAGAGATTTAAAAAGTAAATCTGCTT
1 AATAATACTAATTTAGTAATATTCAAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTAATT
** * ** * * * * *
134317 ACCAAACCATTTCAAATAGTTTTGACTATTTTAAAAATTATCTATTTTGAATCATTATAACCTTT
66 ACTGAACCAGTTCAAATAGTTAAGACTATATGAACAATTATCTATTTTAAATCATTATAACATTT
* * * * * * ** *
134382 TATTTTATCATCAAATAATTGGTTCTGTTTATACTATTTTATTTGAAATAA
131 TATTTTGTTATAAAATAATT-GTTTTGTTCATACAAGCTTATTTGGAATAA
* * * * * * *
134433 AATAAAACTAATTTAATAATATTCTAAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAATT
1 AATAATACTAATTTAGTAATATTCAAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTAATT
* * * ** *
134498 GCTTAACCAGTTGAAATAGTTAAGACTATATGAATGATTATCTATTTCT-AATCATTATGACATT
66 ACTGAACCAGTTCAAATAGTTAAGACTATATGAACAATTATCTATTT-TAAATCATTATAACATT
* * * *
134562 TTCTTTTGTTGTAAAATAATTGTTTTGTTCGTACAAGCTTATTTGGATTAA
130 TTATTTTGTTATAAAATAATTGTTTTGTTCATACAAGCTTATTTGGAATAA
* * **
134613 AATAATATTAATTTAGTAATATTTC-AAAAATTAATAACTAAGAGATTTAAAAAATAAATTTGTT
1 AATAATACTAATTTAGTAATA-TTCAAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTAAT
* * * * * * *
134677 TA-TCGAATC-GTTCAAATGGTTAATACTATTAT-AACAATTATCTATTTCAAATCGTTTTAATA
65 TACT-GAACCAGTTCAAATAGTTAAGACTA-TATGAACAATTATCTATTTTAAATCATTATAACA
* * * * *
134739 TTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGGTTATTTAGAATAA
128 TTTTATTTTGTTATAAAATAATTGTTTT-GTTCATACAAGCTTATTTGGAATAA
* * * *
134793 ATTAATACTAATTTAGTAACATTCAAAAAATTAATAA-AAATGAGATTTAAAAAAATAAATCTAT
1 AATAATACTAATTTAGTAATATTCAAAAAATTAATAACTAA-GAGATTT-AAAAAATAAATCTAA
* ** * *
134857 TTACTGAACAAGTAT-AAATAGTTATTACTATTTGAACAATTGTCTATTTTAAATCATTATAAC
64 TTACTGAACCAGT-TCAAATAGTTAAGACTATATGAACAATTATCTATTTTAAATCATTATAAC
134920 CTTTATTAAA
Statistics
Matches: 387, Mismatches: 87, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
179 68 0.18
180 136 0.35
181 141 0.36
182 41 0.11
183 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.41
Consensus pattern (180 bp):
AATAATACTAATTTAGTAATATTCAAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTAATT
ACTGAACCAGTTCAAATAGTTAAGACTATATGAACAATTATCTATTTTAAATCATTATAACATTT
TATTTTGTTATAAAATAATTGTTTTGTTCATACAAGCTTATTTGGAATAA
Done.