Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168407.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21384
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Found at i:741 original size:354 final size:356
Alignment explanation
Indices: 213--1246 Score: 940
Period size: 355 Copynumber: 2.9 Consensus size: 356
203 CAACTCTCGG
* * * *
213 TCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATAAAATGGGCGTGT
1 TCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGC
*** * * * * **
278 GGGTGCTCAGTCGATCGGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGGGT
66 GAACGCTCAGTCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCAT
* * ** * * * *
343 GCTGCCAATCCTACTGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAAGTCCATAT
131 GCTACCAATCCCACTGCCGCAACCCTCACTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* * * * *
408 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACTCATGAAATGGGCGTACAGCCGCTAAG
196 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGCCGCTAAG
* * * * * *
473 CCTATCGGAGAGGCATAATG-ACAAGTCGGGGATCAGC-CTGATCCCTCTCTGTGTGCTATCGAT
261 CCGATCGGAGAGGCATAATGCACAAGTCAGGGATCAACTC-GATCCCCCTCTGCGTGCTACCGAT
536 CCCACTACCGGTCCTACTGCCACAATCATTGA
325 CCCACTACCGGTCCTACTGCCACAATCATTGA
* * *
568 TCTGACTAGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACGGGTGTGC
1 TCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGC
* *
633 GAACGCTCAG-CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCTCGGTCCCCCCTGCAT
66 GAACGCTCAGTCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCAT
* * *
697 GCTACCGATCCCACTGCCGCAACCCTCACTCCGATCCAATCTTAGACTGGGAATGACCTCCGTAT
131 GCTACCAATCCCACTGCCGCAACCCTCACTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* * * *
762 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAG
196 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGCCGCTAAG
*
827 CCGATCGGAGAGGCATTATGCACAAGTCAGGGATCAACTCGATCCCCCTCTGCGTGCTACCGAT-
261 CCGATCGGAGAGGCATAATGCACAAGTCAGGGATCAACTCGATCCCCCTCTGCGTGCTACCGATC
* *
891 -C-CT----G--CTA---CCACAACCCTTGA
326 CCACTACCGGTCCTACTGCCACAATCATTGA
* * * * * *
911 TGC-GACT-GGAGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCTACAAAACGAGCAT
1 T-CTGACTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGT
* *** * * * * * * * * * * *
974 ACGGGTGCTCA-ACCGGCCGAAAAGGTAGAATGCGTAAGTCGGGGATCGGTCCGATCCCCTCTGC
64 GCGAACGCTCAGTCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGC
* * * * *
1038 GTGCTACCAATCCTACTGCTGGTCCTGCTATTGCAACCCTCAATTCGAACCAATCTTAGACTGGG
129 ATGCTACCAATCC--C-ACT-G--C--C----GCAACCCTCACTCCGATCCAATCTTAGACTGGG
* * * * * * * *
1103 AATGAACTCCGTATGCTTAAAAAT-GGAATGAACTCCATATTCCTAAGCCAACCCATGAAATGAG
182 AATGAACTCCATATGCTT-AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * * * * * * *
1167 CATGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCATAAGTC-GAGGACCGACCCGATCCCCC-
246 CATACAGCCGCTAAGCCGATCGGAGAGGCATAATGCACAAGTCAG-GGATCAACTCGATCCCCCT
*
1230 CTGCGTGCTATCGATCC
310 CTGCGTGCTACCGATCC
1247 TGCTACTGCA
Statistics
Matches: 565, Mismatches: 93, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
342 2 0.00
343 121 0.21
344 1 0.00
345 1 0.00
346 5 0.01
347 1 0.00
348 1 0.00
349 1 0.00
351 1 0.00
352 2 0.00
353 1 0.00
354 189 0.33
355 235 0.42
356 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (356 bp):
TCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGC
GAACGCTCAGTCCAGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCAT
GCTACCAATCCCACTGCCGCAACCCTCACTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGCCGCTAAG
CCGATCGGAGAGGCATAATGCACAAGTCAGGGATCAACTCGATCCCCCTCTGCGTGCTACCGATC
CCACTACCGGTCCTACTGCCACAATCATTGA
Found at i:767 original size:26 final size:26
Alignment explanation
Indices: 737--789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
727 CCGATCCAAT
*
737 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
763 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
789 C
1 C
790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1390 original size:355 final size:355
Alignment explanation
Indices: 715--1397 Score: 806
Period size: 355 Copynumber: 1.9 Consensus size: 355
705 TCCCACTGCC
* * * * * *
715 GCAACCCTCACTCCGATCCAATCTTAGACTGGGAATGACCTCCGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCAATCCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAAATGGGAATGAA
* * * * **
780 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATTA
66 CTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGAA
* * *
845 TGCACAAGTCAGGGATCAACTCGATCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTTG
131 TGCACAAGTCAGGGACCAACCCGATCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTAG
* *
910 ATGCGACTGGAGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCTACAAAACGAGCATA
196 ATGCGACTGGAGCTTAGACATGGAATGAACTACGCATGCCTAAGCCAACCCACAAAACGAGCATA
* * * * * * *
975 CGGGTGCTCAACCGGCCGAAAAGGTAGAATGCGTAAGTCGGGGATCGGTCCGATCCCCTCTGCGT
261 CGGGCGCTCAACCGACCGAAAAGGCAGAATACGCAAGTCGAGGATCGATCCGATCCCCTCTGCGT
1040 GCTACCAATCCTACTGCTGGTCCTGCTATT
326 GCTACCAATCCTACTGCTGGTCCTGCTATT
*
1070 GCAACCCTCAATTCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAAAAT-GGAATGA
1 GCAACCCTCAATCCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTT-AAAATGGGAATGA
* * *
1134 ACTCCATATTCCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCAGTCGACCGGAGAGGCAGA
65 ACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGA
* * * **
1199 ATGCATAAGTC-GAGGACCGACCCGATCCCCC-CTGCGTGCTATCGATCCTGCTACTGCAACCCT
130 ATGCACAAGTCAG-GGACCAACCCGATCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCT
* * * * * *
1262 CAG-TTCGGTCT-GATCTTAGAC-TGGGAATGAACT-CTGCATGCCTAAGTCAACCCACGAAATG
194 -AGATGC-GACTGGAGCTTAGACAT-GGAATGAACTAC-GCATGCCTAAGCCAACCCACAAAACG
* * * * * * * * *
1323 AGCGTGCGGGCGCTGAGCCGATCGGAGAGGCATAATACGCAAG-CTGAGGATCGATCTGATCCCC
255 AGCATACGGGCGCTCAACCGACCGAAAAGGCAGAATACGCAAGTC-GAGGATCGATCCGAT-CCC
1387 CTCTGCGTGCT
318 CTCTGCGTGCT
1398 GTCGGTCTCG
Statistics
Matches: 272, Mismatches: 48, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
353 3 0.01
354 114 0.42
355 152 0.56
356 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (355 bp):
GCAACCCTCAATCCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAAATGGGAATGAA
CTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGAA
TGCACAAGTCAGGGACCAACCCGATCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTAG
ATGCGACTGGAGCTTAGACATGGAATGAACTACGCATGCCTAAGCCAACCCACAAAACGAGCATA
CGGGCGCTCAACCGACCGAAAAGGCAGAATACGCAAGTCGAGGATCGATCCGATCCCCTCTGCGT
GCTACCAATCCTACTGCTGGTCCTGCTATT
Found at i:1472 original size:159 final size:158
Alignment explanation
Indices: 1117--1562 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 158
1107 AACTCCGTAT
* * * * *
1117 GCTTAAAAATGGAATGAACTCCATATTCCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCAG
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * ** * * * *
1182 TCGACCGGAGAGGCAGAATGCATAAG-TCGAGGACCGACCCGATCCCCCCTGCGTGCTATCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGATCTGATCCCCCCTGCGTGCTGTCGATC
**
1246 CTGCTACTGCAACCCTCAGTTCGGTCTGA
130 CTGCTACCACAACCCTCAGTTCGGTCTGA
* * * * * *
1275 TCTTAGAC-TGGGAATGAACTCTGC-ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTG
1 GCTTAAACAT-GGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTC
* * *
1338 AGCCGATCGGAGAGGCATAATACGCAAGCTGAGGATCGATCTGATCCCCCTCTGCGTGCTGTCGG
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGATCTGATCCCCC-CTGCGTGCTGTCGA
* * *
1403 T-CTCGCTGCCACAACCTTCAGTTCGGT-TGGG
128 TCCT-GCTACCACAACCCTCAGTTCGGTCT-GA
* * * *
1434 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGGGCTCAA
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * * *
1499 CC-AGTCGGAGAGGCAGAATGCGCAAGC-CAGGGATCGGTCTGGTCCCTCCTGCGTGCTGCCGAT
66 CCGA-TCGGAGAGGCAGAATGCGCAAGCTGA-GGATCGATCTGATCCCCCCTGCGTGCTGTCGAT
1562 C
129 C
1563 TTACTGTCGC
Statistics
Matches: 232, Mismatches: 45, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 107 0.46
159 123 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGATCTGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTTCGGTCTGA
Found at i:1629 original size:26 final size:26
Alignment explanation
Indices: 1593--1645 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1583 CCAATTTGAT
* *
1593 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTTCATATG
*
1619 CTTAAACTGGGGATGAACTTCATATG
1 CTTAAACTGGGAATGAACTTCATATG
1645 C
1 C
1646 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTTCATATG
Found at i:3573 original size:26 final size:26
Alignment explanation
Indices: 3535--3587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3525 GGCTCAAACT
*
3535 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGGATG
*
3561 CTTAGACAT-GGAATGAACTCCGGATG
1 CTTAGAC-TGGGAATCAACTCCGGATG
3587 C
1 C
3588 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGGATG
Found at i:3938 original size:159 final size:155
Alignment explanation
Indices: 3560--3985 Score: 442
Period size: 156 Copynumber: 2.7 Consensus size: 155
3550 AACTCCGTAT
* * * *
3560 GCTTAGACATGGAATGAACTCCGGATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** *
3625 CCGGTCGGAGAGGCAGAATGCACAACCCAGGGATCAGCCCGATCCCCCTATTTATGCTATCAATC
66 CC-GTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTATACATGCTACCAATC
** * *
3690 CTGCTGTCACCCTCGGTTTGGTCTGA
130 CCACTGACACCCTCGGTCTGGTCTGA
* * * * *
3716 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * * *
3780 GCCGACAGAAAAGGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCCTCTACGTGCTGCCAGT
65 GCCGTC-GGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTATACATGCTACCAAT
*
3845 CCCACTGCCACAACCCTCGGTCTGG-CTGGG
129 CCCACTG--AC-ACCCTCGGTCTGGTCT-GA
* * * *
3875 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
3940 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
66 -CCGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCC
3986 TCCTGCGTGC
Statistics
Matches: 218, Mismatches: 44, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
155 3 0.01
156 108 0.50
158 3 0.01
159 100 0.46
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTATACATGCTACCAATCC
CACTGACACCCTCGGTCTGGTCTGA
Found at i:4080 original size:25 final size:26
Alignment explanation
Indices: 4034--4085 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4024 CCGGTCTGAT
4034 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
4060 CTTAGACTGG-GATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4085 C
1 C
4086 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:4786 original size:26 final size:26
Alignment explanation
Indices: 4756--4807 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4746 GCTTAAAATA
4756 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
4782 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
4808 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:5278 original size:26 final size:26
Alignment explanation
Indices: 5249--5318 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
5239 TAGACTGGAA
*
5249 ATGAACTCTGTATGCCTAGACTAGGG
1 ATGAACTCCGTATGCCTAGACTAGGG
* *
5275 ATGACCTCCGTATGCTTAGACTAGGG
1 ATGAACTCCGTATGCCTAGACTAGGG
*
5301 ATGAACTCCATATGCCTA
1 ATGAACTCCGTATGCCTA
5319 AGTTAACCCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
ATGAACTCCGTATGCCTAGACTAGGG
Found at i:6433 original size:159 final size:158
Alignment explanation
Indices: 6006--6436 Score: 452
Period size: 158 Copynumber: 2.7 Consensus size: 158
5996 AACTCCATAT
* *
6006 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
6071 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGCATCAACCTGGTCCCCCCCTACGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTACGTGCTGTCAATC
** * **
6136 CTGCTGTCCAACCCTCAGTTTGGTCTGA
131 CCACTGCCCAACCCTCAGTCCGGTCTGA
* * * * * * * * *
6164 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * **
6228 GCCGGCCGAAGAGGTATAATGCGTAAGCCGGGGATCGACCTAGTCCCCCTCTACGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTACGTGCTGTCAAT
* * *
6293 CCCACTGCCACAACCTTCGGTCCGG-CTAGG
130 CCCACTGCC-CAACCCTCAGTCCGGTCT-GA
* * * *
6323 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
6388 CCGATCGGAGAGGCAGAATACGCAAGTTGGGGATCGGCCCGGTCCCCCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCC
6437 AACATGCTGC
Statistics
Matches: 211, Mismatches: 58, Indels: 7
0.76 0.21 0.03
Matches are distributed among these distances:
157 1 0.00
158 111 0.53
159 98 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCCTACGTGCTGTCAATC
CCACTGCCCAACCCTCAGTCCGGTCTGA
Found at i:6518 original size:26 final size:26
Alignment explanation
Indices: 6482--6534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6472 CCGATCTGAT
6482 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
6508 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
6534 C
1 C
6535 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:7116 original size:354 final size:362
Alignment explanation
Indices: 6300--7128 Score: 1084
Period size: 354 Copynumber: 2.3 Consensus size: 362
6290 GGTCCCACTG
* * *
6300 CCACAACCTTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCAC
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCAT
* * * ** *
6365 GAAATGGGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATACGCAAGTTGGGGATCGGCCCGG
66 GAAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGG
* *
6430 TCCCCCCAACATGCTGCCGATCTTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
131 TCCCCCCAACATACTGCCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
* * * * *
6495 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACAAAACGAGCGT
196 TGAACTCCATATGCTTAGACCGGAGATGAACTCCGTATGCCTAAGTAAACCCACAAAACAAGCGT
* *
6560 GCAGACGCTCAGCCGATCGGAAAGGCCGGCTGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCC
261 GCAGA-GCT-AGCC-ATC-G-AA-GCCGACTGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCC
* ** * *
6625 GACCCCCCTCTGTGTGCTATTGATCCCGCTGCCAGTCCTGCTT
320 GACCCCCCTCTGCGTGCTACCGATCCCACTGCCAGTCCTGCTA
* *
6668 CCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCAT
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCAT
* *
6733 CAAACGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGG
66 GAAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGG
** * *
6798 T-CCCCTTACGTACTGTCGATCCTGCTGTCGCAACCCTCTG-TCCGATCTGATCTTAGACTGGGA
131 TCCCCCCAACATACTGCCGATCCTGCTGTCGCAACCCTC-GATCCGATCTGATCTTAGACTGGGA
* * *
6861 ATGAACTCCGTATGCTTAGACCGGAGATTAACTCCGTATGCCTAAGTAAACCCACGAAACAAGCG
195 ATGAACTCCATATGCTTAGACCGGAGATGAACTCCGTATGCCTAAGTAAACCCACAAAACAAGCG
* * * * **
6926 TGC-G-GGT-G-C-TC-AA-CCGATTGGAGAGGCATAATGTGTAAGCC-AGGGATCAGCCCGGTC
260 TGCAGAGCTAGCCATCGAAGCCGACTGGAGAGGCATAATGCGCAAGCCGA-GGATCAGCCCGACC
* *
6983 CCCCTCTGCGTGCTGCCGATCCCACTGCCAGTCTTGCTA
324 CCCCTCTGCGTGCTACCGATCCCACTGCCAGTCCTGCTA
* * * *
7022 CCACAACCCTGGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCAT
* *
7087 GAAACGAGCGTGTAGGCGCTCAACCGATCGGAGAGGTAGAAT
66 GAAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAAT
7129 GCATAAATCG
Statistics
Matches: 408, Mismatches: 51, Indels: 18
0.86 0.11 0.04
Matches are distributed among these distances:
353 1 0.00
354 165 0.40
356 2 0.00
359 2 0.00
361 1 0.00
362 1 0.00
364 2 0.00
366 1 0.00
367 114 0.28
368 119 0.29
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (362 bp):
CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCAT
GAAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGG
TCCCCCCAACATACTGCCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
TGAACTCCATATGCTTAGACCGGAGATGAACTCCGTATGCCTAAGTAAACCCACAAAACAAGCGT
GCAGAGCTAGCCATCGAAGCCGACTGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGACCCC
CCTCTGCGTGCTACCGATCCCACTGCCAGTCCTGCTA
Found at i:7268 original size:26 final size:26
Alignment explanation
Indices: 7216--7268 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7206 CTGGTCTGAT
**
7216 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
7242 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCACATG
7268 C
1 C
7269 CAAAGTCGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:7385 original size:354 final size:348
Alignment explanation
Indices: 6301--7425 Score: 849
Period size: 367 Copynumber: 3.1 Consensus size: 348
6291 GTCCCACTGC
* * * *
6301 CACAACCTTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCA-C
1 CACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATC
* * * * *** * * *
6365 GAAATGGGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATACGCAAGTTGGGGATCGGCCCGG
65 -AAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACACAAACCGAGGATCAGCCCGA
** * * * * * *
6430 TCCCCCCAACATGCTGCCGATCTTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
129 T-CCCCTTACGTACTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
** * * * * * * * * *
6495 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACAAAACGAGCGT
193 TGAACTCCGCATGCTTAGACCGGAGATGAACTCCATATGCCAAAGTAAACCCACGAAACAAGCAT
* * *
6560 GCAGACGCTCAGCCGATCGGAAAGGCCG-GCTGGAGAGGCATAATGCGCAAGTC-GAGGATCAGC
258 GC-G--GC-C-G-C--TC---AA--CCGATC-GGAGAGGCAGAATGCGCAAGCCAG-GGATCAGC
** ** *** * * *
6623 CCGACCCCCCTCTGTGTGCTATTGATCCCGCTGCCAGTCCTGCTTC
308 CCGGTCCCCCTCTACGTGCTGCCGAT-CCACT--CAG-CTTGC-TA
*
6669 CACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATC
1 CACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATC
* * * * *
6734 AAACGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGT
65 AAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACACAAACCGAGGATCAGCCCGAT
* *
6799 CCCCTTACGTACTGTCGATCCTGCTGTCGCAACCCTCTGTCCGATCTGATCTTAGACTGGGAATG
130 CCCCTTACGTACTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* * * * *
6864 AACTCCGTATGCTTAGACCGGAGATTAACTCCGTATGCCTAAGTAAACCCACGAAACAAGCGTGC
195 AACTCCGCATGCTTAGACCGGAGATGAACTCCATATGCCAAAGTAAACCCACGAAACAAGCATGC
** * * * * *
6929 GGGTGCTCAACCGATTGGAGAGGCATAATGTGTAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGT
260 GGCCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGT
6994 GCTGCCGATCCCACTGCCAGTCTTGCTA
325 GCTGCCGAT-CCACT--CAG-CTTGCTA
* * *
7022 CCACAACCCTGGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 -CACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * *
7087 GAAACGAGCGTGTAGGCGCTCAACCGATCGGAGAGGTAGAATGCATAAATCGAGGATC-GACTCG
64 CAAACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACACAAACCGAGGATCAG-CCCG
* * * * *
7151 ATCCCTCCTACGTTCTACCGATCCTGCTGTTGGTCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
128 AT--C-CC--C--T-TA-CG----TACTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGAT
* * **
7216 CTTAGACTGGGAATGAACTCTGCATGCTTAGACATGGA-ATGAACTCCATATGCCAAAGTCGACC
180 CTTAGACTGGGAATGAACTCCGCATGCTTAGAC-CGGAGATGAACTCCATATGCCAAAGTAAACC
* * * * *
7280 CATGAAACGAGCATGCGGCCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GAC
244 CACGAAACAAGCATGCGGCCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAG-C
* *
7344 CCGGT-CCCCTTTACGTGCTGTCGAT-C-CT-A-C-TG-T-
308 CCGGTCCCCCTCTACGTGCTGCCGATCCACTCAGCTTGCTA
* * **
7377 CGCAACCCTCGGTCCGTTCTGATCTTAGAC-TGGGAATGAACTCCGTATG
1 CACAACCCTCGGTCCG-ACTGGGCTTAGACAT-GGAATGAACTCCGTATG
7426 TTTAGACTGG
Statistics
Matches: 639, Mismatches: 96, Indels: 58
0.81 0.12 0.07
Matches are distributed among these distances:
353 3 0.00
354 214 0.33
355 3 0.00
356 4 0.01
357 4 0.01
358 1 0.00
359 3 0.00
360 1 0.00
361 2 0.00
362 3 0.00
363 4 0.01
364 2 0.00
366 19 0.03
367 255 0.40
368 120 0.19
369 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (348 bp):
CACAACCCTCGGTCCGACTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATCA
AACGAGCGTGCAGGCGCTCAACCGATCGGAGAGGCAGAATACACAAACCGAGGATCAGCCCGATC
CCCTTACGTACTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGA
ACTCCGCATGCTTAGACCGGAGATGAACTCCATATGCCAAAGTAAACCCACGAAACAAGCATGCG
GCCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTG
CTGCCGATCCACTCAGCTTGCTA
Found at i:7431 original size:26 final size:26
Alignment explanation
Indices: 7401--7451 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7391 CGTTCTGATC
7401 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
7427 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
7452 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:7503 original size:184 final size:184
Alignment explanation
Indices: 7175--7523 Score: 468
Period size: 184 Copynumber: 1.9 Consensus size: 184
7165 CTACCGATCC
* * * * *
7175 TGCTGTTGGTCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGCA
1 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGCA
* *
7240 TGCTTAGACATGGAATGAACTCCATATGCCAAAGTCGACCCATGAAACGAGCATGCGGCCGCTCA
66 TGCTTAGACATGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATGCGGCCGCTCA
* * * *
7305 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTTACG
131 ACCGGACAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCTTTACG
* * *
7359 TGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGTTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGCA
* * * * * * *
7424 TGTTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTC
66 TGCTTAGACAT-GGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATGCGGCCGCTC
*
7488 AACC-GACAAGAGAGGCAGGATGCACAAGCCGGGGAT
130 AACCGGAC-AGAGAGGCAGAATGCACAAGCCGGGGAT
7524 TGAATGGGTG
Statistics
Matches: 141, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
183 3 0.02
184 138 0.98
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
TGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGCA
TGCTTAGACATGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATGCGGCCGCTCA
ACCGGACAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCTTTACG
Found at i:8158 original size:26 final size:26
Alignment explanation
Indices: 8120--8172 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
8110 GGCTCAAAAT
8120 CTTAGACTGGGAATGCAA-TCCGTATG
1 CTTAGACTGGGAATG-AACTCCGTATG
8146 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
8172 C
1 C
8173 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:8345 original size:26 final size:26
Alignment explanation
Indices: 8304--8356 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8294 TTGGTCTGAT
8304 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
8330 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
8356 C
1 C
8357 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:9197 original size:423 final size:423
Alignment explanation
Indices: 8435--9203 Score: 972
Period size: 423 Copynumber: 1.8 Consensus size: 423
8425 GATTAGCCCG
* * * *
8435 ATCCCCCTCTGCGTGCTGCCGATCCCGCTGTCGGTCCTGCTGCCACAACACTCGGTCTGGCTGGG
1 ATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACACTCGGTCCGACTGGG
* * *
8500 GCTTAGAAATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCCCTCAG
66 GCTTAGAAATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGTGGGCCCTAAG
* * * * *
8565 CCGGTCGGAGAGGCAGATTGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTACGTGCTGTCGATC
131 CCGATCGGAGAGGCAGAATGCACAACTCGGGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATC
* * ** * *
8630 CTACTGCCGCATCCCTCATTCCGACTGGAGCTTAGACTTGGAATGAACTACCTATGCCTAAGCCA
196 CTACTGCCGCAACCCTCAGTCCGACTCAAGCTTAGACTGGGAATGAACTACCTATGCATAAGCCA
* *** * * * *
8695 ACCGACGAAACGGGCGTGCGGGCGCTCATACAGTCGGAGAGGCAGAACGCATAAGCCGGGGATCG
261 ACCCACGAAACAAACGTGCGGGCGCTCAGACAGACGAAGAGGCAGAACGCATAAGCCGAGGATCG
*
8760 ACCTGATCCCCTCTGTGTGCTACCGATCTTGCTGTCACAACCCTCGATCTGTAGAGGCCAATCGG
326 ACCCGATCCCCTCTGTGTGCTACCGATCTTGCTGTCACAACCCTCGATCTGTAGAGGCCAATCGG
8825 AGATGCATAATGAGGAAGAAAGGGATCAACCCA
391 AGATGCATAATGAGGAAGAAAGGGATCAACCCA
* *
8858 ATCCCCCTCTGCGTGCTATCGATCCCGCTGCCGGT-CTGGCTGCCACAACCCTCGGTCCGACTGG
1 ATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCT-GCTGCCACAACACTCGGTCCGACTGG
* * * *
8922 GGCTTAGACATGGAATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCGTGTGGGCGCTAA
65 GGCTTAGAAATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGTGGGCCCTAA
* * * * *
8987 GTCGATCGGAGAGGTAGAATGCACAAACT-GGGGATTGGCCCGGT-CCCCCCTAGGTGCTGTCGA
130 GCCGATCGGAGAGGCAGAATGCAC-AACTCGGGGATCGGCCCGATCCCCCCCTACGTGCTGTCGA
* * * * * ***
9050 TCCTGCTGTCGCAACCCTCGGTCC-AGTCCAATCTTAGACTGGGAATGAACTTTGTATGCATAAG
194 TCCTACTGCCGCAACCCTCAGTCCGACT-CAAGCTTAGACTGGGAATGAACTACCTATGCATAAG
* * * * * * * *
9114 TCAACCCATGAAACAAATGTGCGGGCGCTGAGCCGGACGAAGAGGCATAATGCGA-AAGCCGAGG
258 CCAACCCACGAAACAAACGTGCGGGCGCTCAGACAGACGAAGAGGCAGAACGC-ATAAGCCGAGG
9178 ATCGACCCGATCTCCCTCTGTGTGCT
322 ATCGACCCGATC-CCCTCTGTGTGCT
9204 GCCAGTCCCG
Statistics
Matches: 287, Mismatches: 54, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
421 2 0.01
422 124 0.43
423 158 0.55
424 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (423 bp):
ATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACACTCGGTCCGACTGGG
GCTTAGAAATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGTGGGCCCTAAG
CCGATCGGAGAGGCAGAATGCACAACTCGGGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATC
CTACTGCCGCAACCCTCAGTCCGACTCAAGCTTAGACTGGGAATGAACTACCTATGCATAAGCCA
ACCCACGAAACAAACGTGCGGGCGCTCAGACAGACGAAGAGGCAGAACGCATAAGCCGAGGATCG
ACCCGATCCCCTCTGTGTGCTACCGATCTTGCTGTCACAACCCTCGATCTGTAGAGGCCAATCGG
AGATGCATAATGAGGAAGAAAGGGATCAACCCA
Found at i:9332 original size:159 final size:157
Alignment explanation
Indices: 8896--9386 Score: 381
Period size: 158 Copynumber: 3.1 Consensus size: 157
8886 TGCCGGTCTG
* *
8896 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC-CGTATGCCTAAATCAA
1 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCGC-TATGCCTAAGTCAA
** * * * * * * * * *
8960 CCCATGAAACGAGCGTGTGGGCGCTAAGTCGATCGGAGAGGTAGAATGCACAAACTGGGGATTGG
65 CCCATGAAACGAGCGTGTGGGCGCTACCT-GGTCGAAGAGGCAAAATGCACAAGCCGAGGATCGA
* * *
9025 CCCGGTCCCCCCTAGGTGCTGTCGATCCT
129 CCCGATCCCCCCTAGGTGCTGCCGATCCC
* * * * ** * *
9054 GCTGTCGCAACCCTCGGTCCAGTCCA-ATCTTAGAC-TGGGAATGAACTTTG-TATGCATAAGTC
1 GCTGCCACAACCCTCGGTCC-GACTAGGGCTTAGACAT-GGAATGAAC-TCGCTATGCCTAAGTC
* ** * * *
9116 AACCCATGAAACAAATGTGCGGGCGCTGAGCC-GGACGAAGAGGCATAATGCGA-AAGCCGAGGA
63 AACCCATGAAACGAGCGTGTGGGCGCT-A-CCTGGTCGAAGAGGCAAAATGC-ACAAGCCGAGGA
*
9179 TCGACCCGATCTCCCTCT-GTGTGCTGCC-AGTCCC
125 TCGACCCGATC-CCCCCTAG-GTGCTGCCGA-TCCC
* * *
9213 GCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGTCAAC
* * * * *
9278 CCATGAAACGGGCGTGTGGGTGCTCACCTGGTCGAAGAGGCAAAATGTACAAGCCG-GGGTGCGG
66 CCATGAAACGAGCGTGTGGGCGCT-ACCTGGTCGAAGAGGCAAAATGCACAAGCCGAGGAT-CGA
* * ** *
9342 CCTGGTCCCCCCT-GCGTGCTATCGATCCT
129 CCCGATCCCCCCTAG-GTGCTGCCGATCCC
*
9371 GCTGCCGCAACCCTCG
1 GCTGCCACAACCCTCG
9387 ATCTGGTCCG
Statistics
Matches: 255, Mismatches: 61, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
157 1 0.00
158 138 0.54
159 115 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGTCAAC
CCATGAAACGAGCGTGTGGGCGCTACCTGGTCGAAGAGGCAAAATGCACAAGCCGAGGATCGACC
CGATCCCCCCTAGGTGCTGCCGATCCC
Found at i:9619 original size:26 final size:26
Alignment explanation
Indices: 9583--9635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9573 CTGATCTGAT
9583 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
9609 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
9635 C
1 C
9636 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:9687 original size:184 final size:184
Alignment explanation
Indices: 9345--9707 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 184
9335 GGTGCGGCCT
* * * * *
9345 GGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGATTGGG
1 GGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCTGATCCGATCTTAGACTGGG
** * *
9410 AATAAACTCTGTATACTGAGACTGGGGATGAACTTCGTATGCCTAAGTCATCCCACGAAACGAGC
66 AATAAACTCCATATACTGAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * ** *
9475 GTGCAGGTGCTCAGCCGACCGGAGAGGC-AGAATGCGCAAGCTGGGGATCAGTCC
131 GTACAGGCGCTCAGCCGACCAAAGAGGCAAG-ATGCGCAAGCCGGGGATCAGTCC
* *
9529 GGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAATCTGATCTGATCTTAGACTGGG
1 GGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCTGATCCGATCTTAGACTGGG
* * * * *
9594 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
66 AATAAACTCCATATACTGAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* *
9659 GTACGGGCGCTC-GATCGACCAAAGAGGCAAGATGCGCAAGCCGGGGATC
131 GTACAGGCGCTCAG-CCGACCAAAGAGGCAAGATGCGCAAGCCGGGGATC
9708 GAACGGGTGG
Statistics
Matches: 154, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 151 0.98
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCTGATCCGATCTTAGACTGGG
AATAAACTCCATATACTGAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTACAGGCGCTCAGCCGACCAAAGAGGCAAGATGCGCAAGCCGGGGATCAGTCC
Found at i:10342 original size:26 final size:26
Alignment explanation
Indices: 10304--10356 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10294 CACTCAAAAT
10304 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
10330 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
10356 C
1 C
10357 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:10698 original size:159 final size:157
Alignment explanation
Indices: 10329--10757 Score: 396
Period size: 159 Copynumber: 2.7 Consensus size: 157
10319 AACACCGTAT
* *
10329 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGTCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGTCGTTCAG
* * * * * *
10394 CTGGCCGCAGAGGCAGCATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATCCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTACCGATCCC
* * ** **
10459 GCTGTCGTAACCCTCGATATGGCTCGA
131 ACTGCCACAACCCTCGATACAGCTCGA
* * * ** ** *
10486 TCTTAGAC-TGGGAATGAACTCCGTACGCATAAGTTAACCCACAAAACGAGCGTGCGGTCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGTCGTTCA
* * * * * * *
10550 GCCGGCTGAAGAGGCATAATGTGCAGGCCGGGGATTGGCCTGATCCCCCT-CTGCATGCTACCTA
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTAC-G--TGCTACCGA
* * *
10614 TCCCACTGCCACAACCCTC-AGTCCAGCTGGG
127 TCCCACTGCCACAACCCTCGA-TACAGCTCGA
* * * * * *
10645 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGTCGTTCAG
* * * * * *
10710 CCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGAACGGCCCGGTCCCCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
10758 CTGCATGCTG
Statistics
Matches: 208, Mismatches: 58, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
156 2 0.01
157 93 0.45
158 1 0.00
159 111 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGTCGTTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTACCGATCCC
ACTGCCACAACCCTCGATACAGCTCGA
Found at i:10855 original size:26 final size:26
Alignment explanation
Indices: 10804--10856 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10794 CCGGTCTGAT
*
10804 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
* *
10830 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
10856 C
1 C
10857 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:11258 original size:159 final size:158
Alignment explanation
Indices: 10995--11293 Score: 375
Period size: 159 Copynumber: 1.9 Consensus size: 158
10985 CTCGGTCTGG
* **
10995 CTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
1 CTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA
* * * * * * *
11060 CTCAGCCAACCGGAGAGGTAGAATGTACAAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTGT
66 CTCAGACAACCAGAGAAGCAGAATGCACAAGCCGAGGATCGACCCGATCCCT-CCTACGTGCTGC
11125 CGATCTTGCTGCCGCATCCCTCGTTCTTA
130 CGATCTTGCTGCCGCATCCCTCGTTCTTA
* *
11154 CTGGGGCTTAGACATGGAATGAACTAC-CTATGCCTAAGCCAACCGACGAAACGGGCGTGCGGGC
1 CTGGGGCTTAGACATGGAATGAACT-CTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
* ** ** * * * * *
11218 ACTCATACAGTCAGAGAAGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCTTCTGCGTGTTGC
65 ACTCAGACAACCAGAGAAGCAGAATGCACAAGCCGAGGATCGACCCGATCCCTCCTACGTGCTGC
11283 CGATCTTGCTG
130 CGATCTTGCTG
11294 TCGTAACCCT
Statistics
Matches: 117, Mismatches: 22, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
158 19 0.16
159 97 0.83
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA
CTCAGACAACCAGAGAAGCAGAATGCACAAGCCGAGGATCGACCCGATCCCTCCTACGTGCTGCC
GATCTTGCTGCCGCATCCCTCGTTCTTA
Found at i:11354 original size:26 final size:26
Alignment explanation
Indices: 11320--11370 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11310 GCTCTGATCA
*
11320 TAGATTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
*
11346 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
11371 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:12419 original size:159 final size:158
Alignment explanation
Indices: 12064--12462 Score: 360
Period size: 159 Copynumber: 2.5 Consensus size: 158
12054 AACTCCGTAT
* * *
12064 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTTCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
* * * * * *
12129 CCGACCGAAGAGGTAGAATGCATAAGTCGGGGATCAGCCCAATCCCCCCTGCGTGTTGTCAATCC
66 CAGACCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAATCCCCCCTACGTGCTGCCAATCC
* * ** *
12194 TACTGCTGCAACCCTCGGTCTGGTCAGA
131 CACTACCACAACCCTCGGTCCGGTCAGA
* * ** * * * *
12222 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAATCAACCCACGAAATGAGTGTGCGGGTGTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCA
* * * * *
12286 GCAGGCCGAAGAGGCATAATGCGCAAGAT-GGGGATC-GACCCGATCCCCTTCTACGTGCTGCCA
65 GCAGACCGAAGAGGCAGAATGCACAAG-TCGGGGATCAG-CCCAATCCCC-CCTACGTGCTGCCA
* * * *
12349 GTCCCGCTACCACAACCCTCGGTCCGG-CTGGG
127 ATCCCACTACCACAACCCTCGGTCCGGTC-AGA
* * * * *
12381 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTCAAAAC-AGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGGGCTC-
*
12445 ACCA-ACCGAAGAGGCAGA
64 AGCAGACCGAAGAGGCAGA
12463 TCCTGCTGTC
Statistics
Matches: 189, Mismatches: 44, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 90 0.48
159 93 0.49
160 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
CAGACCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAATCCCCCCTACGTGCTGCCAATCC
CACTACCACAACCCTCGGTCCGGTCAGA
Found at i:12526 original size:26 final size:26
Alignment explanation
Indices: 12495--12547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12485 CTGGTATGAT
*
12495 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
12521 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12547 C
1 C
12548 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13256 original size:26 final size:26
Alignment explanation
Indices: 13219--13270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13209 ACTCAAAATA
*
13219 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
13245 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
13271 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14468 original size:158 final size:158
Alignment explanation
Indices: 13969--14468 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 158
13959 TTCGTATGCA
* * *
13969 TAGACATGGAATGAACTCTGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGACG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14034 G-TCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCT-ATCGATACT
66 GCT-GGAAAGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCTGCT-GATCCT
* * *
14097 GCTA-CTACAACCCTCAGTCCGGTTCAATCT
129 GC-AGCCACAACCCTCGGTCCGGTCCAATCT
* * * * * * *
14127 TAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAAGCCACGAAATGAGCCTGCAGGCACTGAGCC
1 TAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
*** * * * * * *
14191 --CACCAAGGAGGCATAATGCGTAAGTCGAGGATCGACCCGATCCCCCTTTGTGTGCTGCCGATC
65 GGCTGGAA--AGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCC-CTGCGTGCTGCTGATC
* * * ****
14254 CCGCAGCCACAACCCTCGATCC-GACTGGGGCT
127 CTGCAGCCACAACCCTCGGTCCGGTC-CAATCT
* * *
14286 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
14351 GCTGGAAAGGCAGAATGCGCAAGTTGGGGATTGGCCCAATCCCCCCTGCGTGCTGCTGGTCCTGC
66 GCTGGAAAGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCTGCTGATCCTGC
*
14416 CGCCACAACCCTCGGTCCGGTCCAATCT
131 AGCCACAACCCTCGGTCCGGTCCAATCT
14444 TAGAC-TGGAAATGAACTCCGTATGC
1 TAGACATGG-AATGAACTCCGTATGC
14469 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 69, Indels: 26
0.73 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 137 0.53
159 110 0.42
160 3 0.01
161 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCTGGAAAGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCTGCTGATCCTGC
AGCCACAACCCTCGGTCCGGTCCAATCT
Found at i:14471 original size:26 final size:26
Alignment explanation
Indices: 14442--14494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14432 CCGGTCCAAT
14442 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
14468 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14494 C
1 C
14495 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21053 original size:26 final size:26
Alignment explanation
Indices: 21015--21067 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21005 GGCTCAAAAT
21015 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21041 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21067 C
1 C
21068 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21360 original size:157 final size:158
Alignment explanation
Indices: 21040--21375 Score: 412
Period size: 157 Copynumber: 2.1 Consensus size: 158
21030 AACTCTGTAT
* * *
21040 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * *
21105 CCGACAGGAGAGTCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGACAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGCTATCGATCC
* * *
21170 TGCTGCCGCAACCCTCAGTTCGGTCCGA
131 CGCTGCCACAACCCTCAGATCGGTCCGA
* * * *
21198 TCTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * *
21262 CC-AGCCGAAGAGGCATAATGCGCAAG-CAGGGGATCGGCCCAGTCCCCTCTACGTGCTATCGGT
66 CCGA-CAGAAGAGGCAGAATGCGCAAGCCA-GGGATCGGCCCAGTCCCCCCTACGTGCTATCGAT
* * *
21325 CCCGCTTCCACAACCCTC-GATCTGG-CTGGG
129 CCCGCTGCCACAACCCTCAGATC-GGTC-CGA
21355 GCTTAGACATGGAATGAACTC
1 GCTTAGACATGGAATGAACTC
21376 TCTATGCCT
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 7 0.05
157 125 0.83
158 19 0.13
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
CCGACAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGCTATCGATCC
CGCTGCCACAACCCTCAGATCGGTCCGA
Done.