Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168413.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_628, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21223
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34


Found at i:20191 original size:18 final size:18

Alignment explanation


    Indices: 20170--20211  Score: 50
    Period size: 18  Copynumber: 2.3  Consensus size: 18

      20160 GTTTCTTTCA

                               
      20170 TTTTA-AAAGTTTTTTATT
          1 TTTTATAAA-TTTTTTATT

                  **          
      20188 TTTTATCTATTTTTTATT
          1 TTTTATAAATTTTTTATT

                  
      20206 TTTTAT
          1 TTTTAT

      20212 GTTTCAAAAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  18   20  0.95
  19    1  0.05

ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74


Consensus pattern (18 bp):   
TTTTATAAATTTTTTATT
Done.