Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168415.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_63, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 139765
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Warning! 1000 characters in sequence are not A, C, G, or T
Found at i:11451 original size:96 final size:95
Alignment explanation
Indices: 11317--11687 Score: 471
Period size: 96 Copynumber: 3.9 Consensus size: 95
11307 TTTCGAGAAC
* * *
11317 AGATGAGATTTTTAAAGTTGATAAACCTCTCCTTAGAGGAGC-TTTTCTAAGATAAGATTTTTAA
1 AGATGA-A-TTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTC-AAGAT-AGATTTTTAA
*
11381 AGTTGTTAAGCCTTTGCTTAAAGGAGCTTTTTCA
62 AGTTGTTGAGCCTTTGCTTAAAGGAGCTTTTTCA
* *
11415 AGATGAATTTTAAAGTTGTTGAACTTCTACTTAGAGGAGCTTTTTCAAGATGGATTTTTAAAGTT
1 AGATGAATTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTT
*
11480 GTTGAGCCTTTGC-TAAGAGAAGCTTTTTCA
66 GTTGAGCCTTTGCTTAA-AGGAGCTTTTTCA
*
11510 AGATGAATTTTAAAGTTGTTGAACCTCTACTTAAAGGAGC-TTTTCTAAGATAAGATTTTTAAAG
1 AGATGAATTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTC-AAGAT-AGATTTTTAAAG
* * * * *
11574 TCGTTGAGCCTCTT-ATTAGAGGAACCTTTTCA
64 TTGTTGAGCCT-TTGCTTAAAGGAGCTTTTTCA
* * * * *
11606 AGATGGATTGTTAAAGTTGTTGAGCCTCTACTTAGAAGAGATTTTTCAAGATGGATTTTTAAAGT
1 AGATGAATT-TTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGT
11671 TGTTGAGCCTTTGCTTA
65 TGTTGAGCCTTTGCTTA
11688 GAAGAGCCTT
Statistics
Matches: 240, Mismatches: 24, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
94 8 0.03
95 82 0.34
96 97 0.40
97 42 0.17
98 11 0.05
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (95 bp):
AGATGAATTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTT
GTTGAGCCTTTGCTTAAAGGAGCTTTTTCA
Found at i:11504 original size:48 final size:48
Alignment explanation
Indices: 11317--11734 Score: 358
Period size: 48 Copynumber: 8.8 Consensus size: 48
11307 TTTCGAGAAC
* * * * * *
11317 AGATGAGATTTTTAAAGTTGATAAACCTCTCCTTAGAGGAGC-TTTTCTA
1 AGATG-GATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTTC-A
* * * *
11366 AGATAAGATTTTTAAAGTTGTTAAGCCTTTGCTTAAAGGAGCTTTTTCA
1 AGAT-GGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTTCA
* * * *
11415 AGAT-GAATTTTAAAGTTGTTGA-ACTTCTACTTAGAGGAGCTTTTTCA
1 AGATGGATTTTTAAAGTTGTTGAGCCTT-TGCTTAGAGAAGCTTTTTCA
*
11462 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTAAGAGAAGCTTTTTCA
1 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTTCA
* * * * * *
11510 AGAT-GAATTTTAAAGTTGTTGAACCTCTACTTAAAGGAGC-TTTTCTA
1 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTTC-A
* * * *
11557 AGATAAGATTTTTAAAGTCGTTGAGCCTCTT-ATTAGAGGAA-CCTTTTCA
1 AGAT-GGATTTTTAAAGTTGTTGAGCCT-TTGCTTAGA-GAAGCTTTTTCA
* * * *
11606 AGATGGATTGTTAAAGTTGTTGAGCCTCTACTTAGA-AGAGATTTTTCA
1 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGA-AGCTTTTTCA
*
11654 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTTAGA-AGAGCCTTTT-A
1 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGA-AGCTTTTTCA
* *
11701 A-A--AATTTTCAAAAGTTGTTGAGCCTTTGCTTAGA
1 AGATGGATTTT-TAAAGTTGTTGAGCCTTTGCTTAGA
11735 TGGGACTTTT
Statistics
Matches: 310, Mismatches: 44, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
44 5 0.02
45 24 0.08
46 10 0.03
47 76 0.25
48 110 0.35
49 72 0.23
50 13 0.04
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.39
Consensus pattern (48 bp):
AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGCTTTTTCA
Found at i:11572 original size:144 final size:144
Alignment explanation
Indices: 11317--11680 Score: 420
Period size: 144 Copynumber: 2.5 Consensus size: 144
11307 TTTCGAGAAC
* * * * *
11317 AGATGAGATTTTTAAAGTTGATAAACCTCTCCTTAGAGGAGC-TTTTCTAAGATAAGATTTTTAA
1 AGATG-GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGAAGCTTTTTC-AAGAT-AGATTTTTAA
* * * *
11381 AGTTGTT-AAGCCTTTGCTTAAAGGAGCTTTTTCAAGATGAATTTTAAAGTTGTTGAACTTC-TA
63 AGTTGTTGAAGCCTCTACTTAAAGGAGCTTTTTCAAGATGAATTTTAAAGTCGTTGAACCTCTTA
* *
11444 CTTAGAGGAGCTTTTTCA
128 -TTAGAGGAACCTTTTCA
* * * *
11462 AGATGGATTTTTAAAGTTGTTGAGCCTTTGCTAAGAGAAGCTTTTTCAAGAT-GAATTTTAAAGT
1 AGATGGATTTTTAAAGTTGTTGAGCCTCTACTTAGAGAAGCTTTTTCAAGATAGATTTTTAAAGT
* *
11526 TGTTGAA-CCTCTACTTAAAGGAGC-TTTTCTAAGATAAGATTTTTAAAGTCGTTGAGCCTCTTA
66 TGTTGAAGCCTCTACTTAAAGGAGCTTTTTC-AAGAT--GAATTTTAAAGTCGTTGAACCTCTTA
11589 TTAGAGGAACCTTTTCA
128 TTAGAGGAACCTTTTCA
* * *
11606 AGATGGATTGTTAAAGTTGTTGAGCCTCTACTTAGA-AGAGATTTTTCAAGATGGATTTTTAAAG
1 AGATGGATTTTTAAAGTTGTTGAGCCTCTACTTAGAGA-AGCTTTTTCAAGATAGATTTTTAAAG
11670 TTGTTG-AGCCT
65 TTGTTGAAGCCT
11681 TTGCTTAGAA
Statistics
Matches: 188, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
141 5 0.03
142 35 0.19
143 3 0.02
144 114 0.61
145 31 0.16
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.39
Consensus pattern (144 bp):
AGATGGATTTTTAAAGTTGTTGAGCCTCTACTTAGAGAAGCTTTTTCAAGATAGATTTTTAAAGT
TGTTGAAGCCTCTACTTAAAGGAGCTTTTTCAAGATGAATTTTAAAGTCGTTGAACCTCTTATTA
GAGGAACCTTTTCA
Found at i:11765 original size:44 final size:44
Alignment explanation
Indices: 11666--11888 Score: 220
Period size: 44 Copynumber: 5.1 Consensus size: 44
11656 ATGGATTTTT
* * *
11666 AAAGTTGTTGAGCCTTTGCTTAGAAGAGCCTTTTAAAAATTTTCA
1 AAAGTTGTTGAGCCTTTACTTAGATGAGCCTTTT-TAAATTTTCA
* * *
11711 AAAGTTGTTGAGCCTTTGCTTAGATGGGACTTTTTAAATTTTCA
1 AAAGTTGTTGAGCCTTTACTTAGATGAGCCTTTTTAAATTTTCA
*
11755 AAAGTTGTTGAG-CTTCTACTTAGATGAGCTTTTTTAAAATTTT-A
1 AAAGTTGTTGAGCCTT-TACTTAGATGAGCCTTTTT-AAATTTTCA
* * * * *
11799 AAAGTCGTTAAGCCTCTACTTAGAGGAGCCTCTTTAAATTTTCA
1 AAAGTTGTTGAGCCTTTACTTAGATGAGCCTTTTTAAATTTTCA
** * * * *
11843 AAAGTCATTGAGCCTCTA-TTCAAAGGAG-CTTTTTAAATTTTTA
1 AAAGTTGTTGAGCCTTTACTT-AGATGAGCCTTTTTAAATTTTCA
11886 AAA
1 AAA
11889 ATGTCGTTGA
Statistics
Matches: 154, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
43 28 0.18
44 86 0.56
45 40 0.26
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (44 bp):
AAAGTTGTTGAGCCTTTACTTAGATGAGCCTTTTTAAATTTTCA
Found at i:11878 original size:43 final size:43
Alignment explanation
Indices: 11618--11898 Score: 217
Period size: 44 Copynumber: 6.3 Consensus size: 43
11608 ATGGATTGTT
* * * **
11618 AAAGTTGTTGAGCCTCTACTTAGAAGAGATTTTTCAAGATGGATTTTT
1 AAAGTCGTTGAGCCTCTACTTAGAGGAGCTTTTT-AA-AT---TTTCA
* * * * *
11666 AAAGTTGTTGAGCCTTTGCTTAGAAGAGCCTTTTAAAAATTTTCA
1 AAAGTCGTTGAGCCTCTACTTAGAGGAG-CTTTT-TAAATTTTCA
* * *
11711 AAAGTTGTTGAGCCTTTGCTTAGATGG-GACTTTTTAAATTTTCA
1 AAAGTCGTTGAGCCTCTACTTAGA-GGAG-CTTTTTAAATTTTCA
* * *
11755 AAAGTTGTTGAGCTTCTACTTAGATGAGCTTTTTTAAAATTTT-A
1 AAAGTCGTTGAGCCTCTACTTAGAGGAGC-TTTTT-AAATTTTCA
* *
11799 AAAGTCGTTAAGCCTCTACTTAGAGGAGCCTCTTTAAATTTTCA
1 AAAGTCGTTGAGCCTCTACTTAGAGGAG-CTTTTTAAATTTTCA
* * *
11843 AAAGTCATTGAGCCTCTA-TTCAAAGGAGCTTTTTAAATTTTTAA
1 AAAGTCGTTGAGCCTCTACTT-AGAGGAGCTTTTTAAA-TTTTCA
11887 AAATGTCGTTGA
1 AAA-GTCGTTGA
11899 ACCTTTGTAG
Statistics
Matches: 198, Mismatches: 24, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
43 19 0.10
44 96 0.48
45 48 0.24
46 1 0.01
48 28 0.14
49 6 0.03
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.40
Consensus pattern (43 bp):
AAAGTCGTTGAGCCTCTACTTAGAGGAGCTTTTTAAATTTTCA
Found at i:12400 original size:4 final size:4
Alignment explanation
Indices: 12391--12418 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
12381 AAACCCACAT
12391 CCAA CCAA CCAA CCAA CCAA CCAA CCAA
1 CCAA CCAA CCAA CCAA CCAA CCAA CCAA
12419 TGATGCTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (4 bp):
CCAA
Found at i:13253 original size:61 final size:59
Alignment explanation
Indices: 13187--13459 Score: 333
Period size: 61 Copynumber: 4.6 Consensus size: 59
13177 TTTGAAAAGG
* *
13187 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAACTTT-AAGAAAATA
1 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAA-TTTCAA-AAAATA
*
13248 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTCAAAATAAAAATTTCAAAAAATA
1 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTCAAAAAATA
* *
13308 TATTTTTGAGGAAAAGATGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC---AAATA
1 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA-TTTCAAAAAATA
* * *
13365 GCA-TTTTAAGGGAAAA-TTGAAAGTATCAATTTTCCTTGAACATAAAATTTTCAAAAAAAAAA
1 -TATTTTTAA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA-TTTC--AAAAAATA
*
13427 TATTTTCAAGGAAAAGTTGAAAGTATCAATTTT
1 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
13460 TCTTTTATAA
Statistics
Matches: 188, Mismatches: 13, Indels: 21
0.85 0.06 0.09
Matches are distributed among these distances:
57 44 0.23
58 7 0.04
59 4 0.02
60 53 0.28
61 54 0.29
62 26 0.14
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (59 bp):
TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAAATA
Found at i:13335 original size:60 final size:60
Alignment explanation
Indices: 13187--13459 Score: 347
Period size: 60 Copynumber: 4.5 Consensus size: 60
13177 TTTGAAAAGG
*
13187 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAACTTT-AAGAAAATA
1 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAA-TTTCAA-AAAATA
* *
13248 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTCAAAATAAAAATTTCAAAAAATA
1 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAAAAAATA
* * * **
13308 TATTTTTGAGGAAAAGATGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAATAGCA
1 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAAAAAATA
** * * *
13368 T-TTTAAG-GGAAAA-TTGAAAGTATCAATTTTCCTTGAACATAAAATTTTCAAAAAAAAAA
1 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTC--AAAAAATA
**
13427 TATTTTCAAGGAAAAGTTGAAAGTATCAATTTT
1 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
13460 TCTTTTATAA
Statistics
Matches: 186, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
57 34 0.18
58 6 0.03
59 10 0.05
60 66 0.35
61 53 0.28
62 17 0.09
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (60 bp):
TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAAAAAATA
Found at i:13471 original size:117 final size:116
Alignment explanation
Indices: 13198--13459 Score: 321
Period size: 117 Copynumber: 2.2 Consensus size: 116
13188 ATTTTTGAGA
* ** *
13198 AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAACTTTAAGAAAATA-TATTTTTAAGGAAA
1 AAAAGATGAAAGTATCAATTTTCCTT-AAAAT-AAAA-TTT--TCAAATAGCA-TTTTAAGGAAA
* **
13262 AGTTGAAAGTATCAATTTTCCTTCAAAATAAAAATTTCAAAAAATATATTTTTGAGG
60 AGTTGAAAGTATCAATTTTCCTTCAAAATAAAAATTTCAAAAAAAATATTTTCAAGG
13319 AAAAGATGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAATAGCATTTTAAGGGAAAA-TT
1 AAAAGATGAAAGTATCAATTTTCCTT-AAAATAAAATTTTCAAATAGCATTTTAA-GGAAAAGTT
* * *
13383 GAAAGTATCAATTTTCCTTGAACATAAAATTTTCAAAAAAAAAATATTTTCAAGG
64 GAAAGTATCAATTTTCCTTCAAAATAAAAATTTC--AAAAAAAATATTTTCAAGG
*
13438 AAAAGTTGAAAGTATCAATTTT
1 AAAAGATGAAAGTATCAATTTT
13460 TCTTTTATAA
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
117 44 0.35
118 7 0.06
119 40 0.32
120 4 0.03
121 31 0.25
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (116 bp):
AAAAGATGAAAGTATCAATTTTCCTTAAAATAAAATTTTCAAATAGCATTTTAAGGAAAAGTTGA
AAGTATCAATTTTCCTTCAAAATAAAAATTTCAAAAAAAATATTTTCAAGG
Found at i:14155 original size:3 final size:3
Alignment explanation
Indices: 14143--14177 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
14133 CACCATTTTG
*
14143 TAT T-T TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14178 CTTTTTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:14189 original size:7 final size:7
Alignment explanation
Indices: 14177--14244 Score: 63
Period size: 6 Copynumber: 10.0 Consensus size: 7
14167 ATTATTATTA
14177 TCTTTTT
1 TCTTTTT
14184 TC-TTTT
1 TCTTTTT
14190 T-TTTTT
1 TCTTTTT
14196 TCATTTTT
1 TC-TTTTT
14204 TCATTTTT
1 TC-TTTTT
*
14212 TCATTTT
1 TCTTTTT
*
14219 T-TTTTA
1 TCTTTTT
14225 T-TTTTT
1 TCTTTTT
*
14231 TCCTTTT
1 TCTTTTT
14238 TCTTTTT
1 TCTTTTT
14245 ATTTTCTGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
6 19 0.37
7 17 0.33
8 15 0.29
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (7 bp):
TCTTTTT
Found at i:14210 original size:19 final size:18
Alignment explanation
Indices: 14180--14249 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 18
14170 ATTATTATCT
*
14180 TTTTTCTTTTTTTTTTTCA
1 TTTTT-TTTTATTTTTTCA
*
14199 --TTTTTTCATTTTTTCA
1 TTTTTTTTTATTTTTTCA
*
14215 TTTTTTTTTATTTTTTTCCT
1 TTTTTTTTTA-TTTTTT-CA
14235 TTTTCTTTTTATTTT
1 TTTT-TTTTTATTTT
14250 CTGTTCTGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
16 11 0.26
17 3 0.07
18 7 0.17
19 6 0.14
20 9 0.21
21 6 0.14
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTATTTTTTCA
Found at i:14219 original size:28 final size:26
Alignment explanation
Indices: 14179--14230 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
14169 TATTATTATC
*
14179 TTTTTTCTTTTTTTTTTTCATTTTTTCA
1 TTTTTTC-ATTTTTTTTT-ATTTTTTCA
14207 TTTTTTCATTTTTTTTTATTTTTT
1 TTTTTTCATTTTTTTTTATTTTTT
14231 TCCTTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.30
27 9 0.39
28 7 0.30
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (26 bp):
TTTTTTCATTTTTTTTTATTTTTTCA
Found at i:14231 original size:27 final size:27
Alignment explanation
Indices: 14179--14249 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 27
14169 TATTATTATC
*
14179 TTTTTTCTTTTTTTTTTTCATTTTTTCA
1 TTTTTTCTTTTTTTTTAT-ATTTTTTCA
14207 TTTTTTCATTTTTTTTTAT-TTTTTTC-
1 TTTTTTC-TTTTTTTTTATATTTTTTCA
*
14233 CTTTTTCTTTTTATTTT
1 TTTTTTCTTTTT-TTTT
14250 CTGTTCTGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
25 5 0.13
26 10 0.26
27 7 0.18
28 7 0.18
29 10 0.26
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (27 bp):
TTTTTTCTTTTTTTTTATATTTTTTCA
Found at i:14237 original size:26 final size:26
Alignment explanation
Indices: 14188--14250 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
14178 CTTTTTTCTT
*
14188 TTTTTTTTTCATTTTTTCATTTTTTC
1 TTTTTTTTTCATTTTTTCACTTTTTC
14214 ATTTTTTTTT-ATTTTTTTC-CTTTTTC
1 -TTTTTTTTTCA-TTTTTTCACTTTTTC
14240 TTTTTATTTTC
1 TTTTT-TTTTC
14251 TGTTCTGATC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 5 0.16
26 11 0.34
27 16 0.50
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (26 bp):
TTTTTTTTTCATTTTTTCACTTTTTC
Found at i:22018 original size:19 final size:20
Alignment explanation
Indices: 21982--22029 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
21972 ACTTTCAATT
21982 AAAAAAAACCAAACAAAT-A
1 AAAAAAAACCAAACAAATGA
*
22001 AAAAACAAACCCAA-AAATGA
1 AAAAA-AAACCAAACAAATGA
22021 AAAGAAAAA
1 AAA-AAAAA
22030 AGATTGGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.36
20 14 0.56
21 2 0.08
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (20 bp):
AAAAAAAACCAAACAAATGA
Found at i:22245 original size:256 final size:258
Alignment explanation
Indices: 21767--22285 Score: 834
Period size: 256 Copynumber: 2.0 Consensus size: 258
21757 AACCTTAGCC
* ** *
21767 AAAAAAGATTGATTGGTGACTTCGTTATTTTTTTATTTTATTTCCAAATTCGTCGGGTGGACACC
1 AAAAAAGATTGAGTGGTGACTTCGTTATTTTTTTATTTTATTTCCAAATTCGTCAAGTGGACACA
*
21832 AAACTGTTATAATAGCTTAATGACTCCACTGGGGAGGTCATTAGTTTTCGAGAGTCAGACCAAAT
66 AAACTGTTATAATAGCTTAACGACTCCACTGGGGAGGTCATTAGTTTTCGAGAGTCAGACCAAAT
* * *
21897 GAACTATGTGTATCTTTCAAATTTTGATTTAAACAGTCTTAATCGTATTTAGTTTTAATTCTTAG
131 GAACTATGTGTATCTCTCAAATTTTAATTTAAACAGTCTTAATCGTATTTAGTTTTAATTCCTAG
21962 ATTCTTTTTTACTTTCAATTAAAAAAAACCAAACAAATAAAAAACAAACCCAAAAATGAAAAG
196 ATTCTTTTTTACTTTCAATTAAAAAAAACCAAACAAATAAAAAACAAACCCAAAAATGAAAAG
22025 AAAAAAGATTG-GTGGTGACTTCGTTA-TTTTTTATTTTATTTCCAAATTCGTCAAGTGGACACA
1 AAAAAAGATTGAGTGGTGACTTCGTTATTTTTTTATTTTATTTCCAAATTCGTCAAGTGGACACA
* * *
22088 AAACTGTTATAATAGCTTAGCGACTCCACTGGGGAGGTCATTTGTTTTCGAGAGTCAGGCCAAAA
66 AAACTGTTATAATAGCTTAACGACTCCACTGGGGAGGTCATTAGTTTTCGAGAGTCAGACC-AAA
*
22153 TGAACTATGTGTTATC-CTCAAATTTTAATTTAAACAGTCTTAATCGATATTTAATTTTTAATTC
130 TGAACTATGTG-TATCTCTCAAATTTTAATTTAAACAGTCTTAATCG-TATTT-AGTTTTAATTC
* *
22217 CTGGATT-TTTTTTGCTTTCAA-T-AAAAAAACCAAACAAATAAAAAACAAACCCAAAAATGAAA
192 CTAGATTCTTTTTTACTTTCAATTAAAAAAAACCAAACAAATAAAAAACAAACCCAAAAATGAAA
22279 AG
257 AG
22281 AAAAA
1 AAAAA
22286 TTTTCATATG
Statistics
Matches: 243, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
256 138 0.57
257 57 0.23
258 33 0.14
259 15 0.06
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (258 bp):
AAAAAAGATTGAGTGGTGACTTCGTTATTTTTTTATTTTATTTCCAAATTCGTCAAGTGGACACA
AAACTGTTATAATAGCTTAACGACTCCACTGGGGAGGTCATTAGTTTTCGAGAGTCAGACCAAAT
GAACTATGTGTATCTCTCAAATTTTAATTTAAACAGTCTTAATCGTATTTAGTTTTAATTCCTAG
ATTCTTTTTTACTTTCAATTAAAAAAAACCAAACAAATAAAAAACAAACCCAAAAATGAAAAG
Found at i:22274 original size:19 final size:20
Alignment explanation
Indices: 22239--22285 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
22229 TGCTTTCAAT
22239 AAAAAAACCAAACAAAT-AA
1 AAAAAAACCAAACAAATGAA
*
22258 AAAACAAACCCAA-AAATGAA
1 AAAA-AAACCAAACAAATGAA
22278 AAGAAAAA
1 AA-AAAAA
22286 TTTTCATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (20 bp):
AAAAAAACCAAACAAATGAA
Found at i:27479 original size:13 final size:13
Alignment explanation
Indices: 27461--27486 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27451 ATTATTAAAG
27461 AAAAATCAAAATA
1 AAAAATCAAAATA
27474 AAAAATCAAAATA
1 AAAAATCAAAATA
27487 GAAAGAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATCAAAATA
Found at i:27751 original size:57 final size:57
Alignment explanation
Indices: 27516--27936 Score: 675
Period size: 56 Copynumber: 7.4 Consensus size: 57
27506 TTTTTTTTGT
*
27516 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTT-TA
1 AGGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTGAAAATTTATTTCTA
27572 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTG-AAATTTA-TTCTTA
1 AGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAAATTTATTTC-TA
*
27628 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTT-TAAATTTATTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAAATTTATTTCTA
27684 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAAATTTATTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAAATTTATTTCTA
27741 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTATTTC-A
1 AGGAAAATTGATACTTTCAACTTTTCC-CAAAAATA--TTTTTTTGAAAATTTATTTCTA
27800 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTATTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATA-TTTTTTTGAAAATTTATTTCTA
27858 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTG-AAATTTATTT-T-
1 AGGAAAATTGATACTTTCAACTTTTCCCAAAAATA-TTTTTTTGAAAATTTATTTCTA
27913 -GGAAAATTGATACTTTCAACTTTT
1 AGGAAAATTGATACTTTCAACTTTT
27937 TTTTTCTTTA
Statistics
Matches: 353, Mismatches: 1, Indels: 24
0.93 0.00 0.06
Matches are distributed among these distances:
54 26 0.07
55 17 0.05
56 127 0.36
57 74 0.21
58 61 0.17
59 28 0.08
60 20 0.06
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (57 bp):
AGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAAATTTATTTCTA
Found at i:28374 original size:27 final size:27
Alignment explanation
Indices: 28335--28396 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
28325 AACAAAATTA
*
28335 AAATAAAAACTAAGATAA-AAAGAATATT
1 AAAT-AAAACTAAGATAATAAAGAA-AAT
* * *
28363 AAATAAACCTAATATAATAAATAAAAT
1 AAATAAAACTAAGATAATAAAGAAAAT
28390 AAATAAA
1 AAATAAA
28397 TAAACAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (27 bp):
AAATAAAACTAAGATAATAAAGAAAAT
Found at i:29402 original size:14 final size:14
Alignment explanation
Indices: 29370--29399 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
29360 TATAAAAAAA
29370 AATAATAATAATAT
1 AATAATAATAATAT
29384 AATAATAATACATAT
1 AATAATAATA-ATAT
29399 A
1 A
29400 TAACTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAATAATAATAT
Found at i:29618 original size:20 final size:21
Alignment explanation
Indices: 29593--29631 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
29583 TTACCCCCTT
29593 TGGGCCAGG-CCCAATTGGTC
1 TGGGCCAGGACCCAATTGGTC
*
29613 TGGGCCTGGACCCAATTGG
1 TGGGCCAGGACCCAATTGG
29632 GTGTCTACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (21 bp):
TGGGCCAGGACCCAATTGGTC
Found at i:31280 original size:18 final size:20
Alignment explanation
Indices: 31248--31293 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
31238 CATATGAAAA
31248 TTTTTCTTTTCATTT-TTAGG
1 TTTTT-TTTTCATTTGTTAGG
*
31268 TTTTTTTTT-ATTTGTTTGG
1 TTTTTTTTTCATTTGTTAGG
31287 TTTTTTT
1 TTTTTTT
31294 ATTGAAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 15 0.62
20 5 0.21
ACGTcount: A:0.07, C:0.04, G:0.11, T:0.78
Consensus pattern (20 bp):
TTTTTTTTTCATTTGTTAGG
Found at i:32477 original size:199 final size:199
Alignment explanation
Indices: 32119--32477 Score: 456
Period size: 199 Copynumber: 1.8 Consensus size: 199
32109 TATATTGAAG
* *
32119 TTTTTCTATAAATATTCCAATACACTGGTAATATTTAAAAAAAAATCTTCTCACCTAGGGATTTC
1 TTTTTCTATAAATACTCCAATACACTGGTAATATTTAAAAAAAAATCTTCTCACCTAGAGATTTC
* ** * *
32184 GTAAAGCACCACTACTCGAAATACTTTTAGAATCCCATCATTGGATAAAATTTCTTTTTTCTACA
66 GTAAAGCACCACTACTCGAAATACCTTTAGAATCCCATCATCAGATAAAAATTCTTCTTTCTACA
**
32249 TTTAGATTATTATTATTATTATTTTTTTTAATTTATTAGTAAAAAGAAAAACTTTTATTGTGTTG
131 TTTAGATTATTATTATTATTAACTTTTTTAATTTATTAGTAAAAAGAAAAACTTTTATTGTGTTG
32314 AAAA
196 AAAA
* * *
32318 TTTTTTTATAAATACTCCAATACACTGGTAGTATTT-AAAAAAAATCTTCTCACTTAGAGATTTC
1 TTTTTCTATAAATACTCCAATACACTGGTAATATTTAAAAAAAAATCTTCTCACCTAGAGATTTC
* * * * * * *
32382 GT-AGGTATCACTACTTGGAGTACCTTT-GAATCTCATCATCAGATAAAAATT-TTCTTTCTTAC
66 GTAAAGCACCACTACTCGAAATACCTTTAGAATCCCATCATCAGATAAAAATTCTTCTTTC-TAC
** *
32444 ATTTTTATTATTTTTATTTAATTAAACTTTTTTA
130 ATTTAGATTATTATTA-TT-ATT-AACTTTTTTA
32478 CCAATTATTT
Statistics
Matches: 134, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
195 6 0.04
196 36 0.27
197 20 0.15
198 31 0.23
199 41 0.31
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (199 bp):
TTTTTCTATAAATACTCCAATACACTGGTAATATTTAAAAAAAAATCTTCTCACCTAGAGATTTC
GTAAAGCACCACTACTCGAAATACCTTTAGAATCCCATCATCAGATAAAAATTCTTCTTTCTACA
TTTAGATTATTATTATTATTAACTTTTTTAATTTATTAGTAAAAAGAAAAACTTTTATTGTGTTG
AAAA
Found at i:32645 original size:21 final size:19
Alignment explanation
Indices: 32621--32663 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
32611 GAATATTAAT
*
32621 AATAAAATTTAAAATAACAAA
1 AATAAAATATAAAA-AA-AAA
*
32642 AATAATATATAAAAAAAAA
1 AATAAAATATAAAAAAAAA
32661 AAT
1 AAT
32664 TTTTACTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 12 0.60
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
AATAAAATATAAAAAAAAA
Found at i:34366 original size:61 final size:59
Alignment explanation
Indices: 34295--34648 Score: 466
Period size: 61 Copynumber: 5.9 Consensus size: 59
34285 TGCTTTTATA
* *
34295 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTGAAAATTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTT-TTGAAAATTTTATTTT
* * *
34355 CCAAGGAAAATTGATAATTTCAACTTTTCC-TAAAAATGTTTTTTTTGAAAATTTTATGTT
1 -CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAT-ATTTTTTTGAAAATTTTATTTT
** *
34415 CAAGGAAAATTGATACTTTCAA-TTTTCCCTT-AAAAT-GCTTTATGAAAATTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTT-CCTTAAAAATATTTTTTTGAAAATTTTATTTT
34472 CAAGGAAAATTGATACTTTCAAC-TTTCCTTCAAAAATATATTTTTTGAAAATTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTT-AAAAATAT-TTTTTTGAAAATTTTATTTT
**
34532 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTCTTGAAGTTTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATAT-TTTT-TTGAAAATTTTATTTT
* * * * *
34593 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATACTTTTTTGAAATTTTTAT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTAT
34649 GCTTTAAGGA
Statistics
Matches: 264, Mismatches: 19, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
56 4 0.02
57 42 0.16
58 9 0.03
59 40 0.15
60 81 0.31
61 88 0.33
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTATTTT
Found at i:36224 original size:85 final size:85
Alignment explanation
Indices: 36092--36354 Score: 250
Period size: 85 Copynumber: 3.1 Consensus size: 85
36082 AAAAAAAACT
* *
36092 TGACATAAGTCGAAATCCAAAAATG--ATGACTTAGATCAAACTGAAGTCTGAAATGAA-CAATT
1 TGACATAAGTCGAAATCC-AAAATGAAATGACTTGGATCAAACTGAAGTCT-AAATGAATCAACT
36154 TAGACTAAGCCAAAGAAGGATC
64 TAGACTAAGCCAAAGAAGGATC
* * * * * * * *
36176 TGACATAAGTCAAAATTCAAAATGAAATGATTTGGATTAAACTGAAGTCTAACTTAATTAACTTG
1 TGACATAAGTCGAAATCCAAAATGAAATGACTTGGATCAAACTGAAGTCTAAATGAATCAACTTA
36241 GACTAAGCCAAAGAAGGATC
66 GACTAAGCCAAAGAAGGATC
* * * * * * *
36261 T-AGCATAAGCCGAAATCCAAAACGAAATGACCTGAATGAAACTGAAGTCAAAGATAAAT-AACT
1 TGA-CATAAGTCGAAATCCAAAATGAAATGACTTGGATCAAACTGAAGTCTAA-ATGAATCAACT
* * *
36324 TGGACTGAA-CCAAAGAAAGATA
64 TAGACT-AAGCCAAAGAAGGATC
*
36346 TAACATAAG
1 TGACATAAG
36355 CCAAAACCCA
Statistics
Matches: 149, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
83 6 0.04
84 22 0.15
85 114 0.77
86 7 0.05
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (85 bp):
TGACATAAGTCGAAATCCAAAATGAAATGACTTGGATCAAACTGAAGTCTAAATGAATCAACTTA
GACTAAGCCAAAGAAGGATC
Found at i:36385 original size:85 final size:84
Alignment explanation
Indices: 36156--36387 Score: 268
Period size: 85 Copynumber: 2.7 Consensus size: 84
36146 GAACAATTTA
* * * * * *
36156 GACTAAGCCAAAGAAGGATCTGACATAAGTCAAAATTCAAAATGAAATGATTTGGATTAAACTGA
1 GACTAAGCCAAAGAAGGATCTAACATAAGCCAAAATCCAAAACGAAATGATCT-GATGAAACTGA
* * *
36221 AGTCTAACTTAATTAACTTG
65 AGTCAAACATAAATAACTTG
* * *
36241 GACTAAGCCAAAGAAGGATCTAGCATAAGCCGAAATCCAAAACGAAATGACCTGAATGAAACTGA
1 GACTAAGCCAAAGAAGGATCTAACATAAGCCAAAATCCAAAACGAAATGATCTG-ATGAAACTGA
*
36306 AGTCAAAGATAAATAACTTG
65 AGTCAAACATAAATAACTTG
* * * *
36326 GACTGAA-CCAAAGAAAGATATAACATAAGCCAAAACCCAAAACAAAATGATCTAGATGAAAC
1 GACT-AAGCCAAAGAAGGATCTAACATAAGCCAAAATCCAAAACGAAATGATCT-GATGAAAC
36388 CAAAGTCTGA
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
84 1 0.01
85 120 0.97
86 3 0.02
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.19
Consensus pattern (84 bp):
GACTAAGCCAAAGAAGGATCTAACATAAGCCAAAATCCAAAACGAAATGATCTGATGAAACTGAA
GTCAAACATAAATAACTTG
Found at i:36620 original size:33 final size:34
Alignment explanation
Indices: 36558--36844 Score: 128
Period size: 34 Copynumber: 8.5 Consensus size: 34
36548 CAATCCAAAG
* * *
36558 ATTCACAAG-ATTCAAAATTCACAAGAATTTCAA
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
** *
36591 ATTCGTAA-AATTGAAGATTCACAAAAATTTCAG
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
** ***
36624 ATTCACAAGAATTGAAGATTTGCAAGGCTTTCAA
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
*** * * ** **
36658 ATTCGTGAGAGTTGGAGATTTGCAAAGTTTTCAA
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
* ** ** * *
36692 ATTCACAAGAATTGGAGATTTGCAAAGTTTTTAG
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
** ** *
36726 ATTCACAAGAATTGAAGATTTGCAAAGCTTTCAG
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
* * * *** *
36760 ATTCGCAAGAATTGTAGATTCGCAAGGCTTTCAG
1 ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
** * * ** * *
36794 ATTTGCAAGAAATAAAGATTCGTAGAAACTTTCAG
1 ATTCACAAGAATTGAAGATTCACA-AAAATTTCAA
36829 ATTCACAAGAATTGAA
1 ATTCACAAGAATTGAA
36845 AAAAACTTCT
Statistics
Matches: 206, Mismatches: 45, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
33 32 0.16
34 154 0.75
35 20 0.10
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (34 bp):
ATTCACAAGAATTGAAGATTCACAAAAATTTCAA
Found at i:36642 original size:17 final size:17
Alignment explanation
Indices: 36555--36643 Score: 78
Period size: 17 Copynumber: 5.4 Consensus size: 17
36545 TTGCAATCCA
36555 AAGATTCACAAG-ATTC
1 AAGATTCACAAGAATTC
*
36571 AAAATTCACAAGAATTTC
1 AAGATTCACAAGAA-TTC
** *
36589 AA-ATTCGTAA-AATTG
1 AAGATTCACAAGAATTC
*
36604 AAGATTCACAAAAATTTC
1 AAGATTCACAAGAA-TTC
*
36622 -AGATTCACAAGAATTG
1 AAGATTCACAAGAATTC
36638 AAGATT
1 AAGATT
36644 TGCAAGGCTT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
15 4 0.07
16 21 0.36
17 26 0.45
18 7 0.12
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.28
Consensus pattern (17 bp):
AAGATTCACAAGAATTC
Found at i:36642 original size:34 final size:34
Alignment explanation
Indices: 36599--36844 Score: 231
Period size: 34 Copynumber: 7.2 Consensus size: 34
36589 AAATTCGTAA
* **
36599 AATTGAAGATTCACAAAAATTTCAGATTCACAAG
1 AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
* * * ***
36633 AATTGAAGATTTGCAAGGCTTTCAAATTCGTGAG
1 AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
* * * * *
36667 AGTTGGAGATTTGCAAAGTTTTCAAATTCACAAG
1 AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
* * * *
36701 AATTGGAGATTTGCAAAGTTTTTAGATTCACAAG
1 AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
* *
36735 AATTGAAGATTTGCAAAGCTTTCAGATTCGCAAG
1 AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
* * **
36769 AATTGTAGATTCGCAAGGCTTTCAGATTTGCAAG
1 AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
* * * *
36803 AAATAAAGATTCGTAGAAACTTTCAGATTCACAAG
1 AATTGAAGATTCGCA-AAGCTTTCAGATTCACAAG
36838 AATTGAA
1 AATTGAA
36845 AAAAACTTCT
Statistics
Matches: 174, Mismatches: 37, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
34 154 0.89
35 20 0.11
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (34 bp):
AATTGAAGATTCGCAAAGCTTTCAGATTCACAAG
Found at i:36802 original size:17 final size:17
Alignment explanation
Indices: 36741--36802 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
36731 CAAGAATTGA
* *
36741 AGATTTGCAAAGCTTTC
1 AGATTCGCAAGGCTTTC
**
36758 AGATTCGCAAGAATTGT-
1 AGATTCGCAAGGCTT-TC
36775 AGATTCGCAAGGCTTTC
1 AGATTCGCAAGGCTTTC
*
36792 AGATTTGCAAG
1 AGATTCGCAAG
36803 AAATAAAGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
16 1 0.03
17 34 0.94
18 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (17 bp):
AGATTCGCAAGGCTTTC
Found at i:36813 original size:102 final size:103
Alignment explanation
Indices: 36604--36844 Score: 270
Period size: 102 Copynumber: 2.4 Consensus size: 103
36594 CGTAAAATTG
* * * **
36604 AAGATTCACA-AAAATTTCAGATTCACAAGAATTGAAGATTTGCAAGGCTTTCAAATTCGTGAGA
1 AAGATTCGCAGAAACTTTCAGATTCACAAGAATTGAAGATTTGCAAAGCTTTCAAATTCGCAAGA
* * * * *
36668 GTTGGAGATTTGCAAAGTTTTCAAATTCACAAGAATTG
66 ATTGGAGATTCGCAAAGCTTTCAAATTCACAAGAAATA
* * ** * *
36706 GAGATTTGCA-AAGTTTTTAGATTCACAAGAATTGAAGATTTGCAAAGCTTTCAGATTCGCAAGA
1 AAGATTCGCAGAAACTTTCAGATTCACAAGAATTGAAGATTTGCAAAGCTTTCAAATTCGCAAGA
* * * **
36770 ATTGTAGATTCGCAAGGCTTTCAGATTTGCAAGAAATA
66 ATTGGAGATTCGCAAAGCTTTCAAATTCACAAGAAATA
*
36808 AAGATTCGTAGAAACTTTCAGATTCACAAGAATTGAA
1 AAGATTCGCAGAAACTTTCAGATTCACAAGAATTGAA
36845 AAAAACTTCT
Statistics
Matches: 112, Mismatches: 26, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
102 89 0.79
103 23 0.21
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (103 bp):
AAGATTCGCAGAAACTTTCAGATTCACAAGAATTGAAGATTTGCAAAGCTTTCAAATTCGCAAGA
ATTGGAGATTCGCAAAGCTTTCAAATTCACAAGAAATA
Found at i:38057 original size:16 final size:15
Alignment explanation
Indices: 38037--38137 Score: 68
Period size: 16 Copynumber: 6.7 Consensus size: 15
38027 GAGTTTTCTT
*
38037 TTTTCTCCTTTTTCA
1 TTTTCTTCTTTTTCA
**
38052 TCTTTC-AGTTTTTCA
1 T-TTTCTTCTTTTTCA
*
38067 TTTTTCTTGTTCTTTCA
1 -TTTTCTTCTT-TTTCA
38084 TTTTCTTCTTTTTC-
1 TTTTCTTCTTTTTCA
* *
38098 TTGT-TTCTTTTT-T
1 TTTTCTTCTTTTTCA
38111 TTTTCTT-TTTTCTCA
1 TTTTCTTCTTTT-TCA
38126 GTTTTCTTCTTT
1 -TTTTCTTCTTT
38138 CACCCATCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 18
0.73 0.07 0.19
Matches are distributed among these distances:
13 15 0.22
14 6 0.09
15 16 0.23
16 24 0.35
17 8 0.12
ACGTcount: A:0.05, C:0.19, G:0.04, T:0.72
Consensus pattern (15 bp):
TTTTCTTCTTTTTCA
Found at i:38098 original size:6 final size:6
Alignment explanation
Indices: 38060--38120 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
38050 CATCTTTCAG
* *
38060 TTTTTC ATTTTTC TTGTTC TTTCATT- TTCTTC TTTTTC TTGTTTC TTTTT-
1 TTTTTC -TTTTTC TTTTTC TTT--TTC TTTTTC TTTTTC TT-TTTC TTTTTC
38110 TTTTTC TTTTT
1 TTTTTC TTTTT
38121 TCTCAGTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
5 7 0.16
6 22 0.49
7 14 0.31
8 2 0.04
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:38112 original size:25 final size:24
Alignment explanation
Indices: 38052--38120 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
38042 TCCTTTTTCA
*
38052 TCTTTCAGTTTTTCATTTTTCTTGT
1 TCTTTCATTTTTTC-TTTTTCTTGT
38077 TCTTTCATTTTCTTCTTTTTCTTGTT
1 TCTTTCATTTT-TTCTTTTTCTTG-T
*
38103 TCTTT-TTTTTTTCTTTTT
1 TCTTTCATTTTTTCTTTTT
38121 TCTCAGTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.20
25 23 0.57
26 9 0.22
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.75
Consensus pattern (24 bp):
TCTTTCATTTTTTCTTTTTCTTGT
Found at i:38123 original size:25 final size:24
Alignment explanation
Indices: 38060--38120 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
38050 CATCTTTCAG
38060 TTTTTCATTTTTCTTGTTCTTTCATT
1 TTTTTC-TTTTTCTTGTTCTTT-ATT
*
38086 TTCTTCTTTTTCTTGTTTCTTT-TT
1 TTTTTCTTTTTCTTG-TTCTTTATT
38110 TTTTTCTTTTT
1 TTTTTCTTTTT
38121 TCTCAGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 12 0.38
25 9 0.28
26 11 0.34
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (24 bp):
TTTTTCTTTTTCTTGTTCTTTATT
Found at i:38523 original size:21 final size:21
Alignment explanation
Indices: 38497--38536 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38487 ATGGCATTTA
*
38497 TTTTTCTTTTCCTTTTTTTTG
1 TTTTTCTTTTCATTTTTTTTG
38518 TTTTTCTTTTCATTTTTTT
1 TTTTTCTTTTCATTTTTTT
38537 CTATTTGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (21 bp):
TTTTTCTTTTCATTTTTTTTG
Found at i:44365 original size:115 final size:113
Alignment explanation
Indices: 44153--44365 Score: 279
Period size: 115 Copynumber: 1.8 Consensus size: 113
44143 TTTGTACAAA
* * * * *
44153 GAAAGTTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTTTAATTTTATGTTCAAGGAAAAT
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTCTTGAATTTTATGTTCAAGGAAAAT
*
44218 TGATACTTTCAATTTTCCCTTAAAATGCTTTTTGAAAATTTAGTTTCAAG
66 TGATACTTTCAATTTT-CCTTAAAA-GATTTTTGAAAATTTAGTTTCAAG
*
44268 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTCTTGAAGTTTTTATTTTCAAGGAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTCTTGAA--TTTTATGTTCAAGGAAA
44333 ATTGATACATTT-AACTTTT-CTTCAAAA-ATTTTT
64 ATTGATAC-TTTCAA-TTTTCCTT-AAAAGATTTTT
44366 TTTTGAAATT
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
115 46 0.53
116 3 0.03
117 30 0.35
118 7 0.08
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.46
Consensus pattern (113 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTCTTGAATTTTATGTTCAAGGAAAAT
TGATACTTTCAATTTTCCTTAAAAGATTTTTGAAAATTTAGTTTCAAG
Found at i:45707 original size:44 final size:44
Alignment explanation
Indices: 45659--45815 Score: 172
Period size: 44 Copynumber: 3.6 Consensus size: 44
45649 CTCCTTTGAA
* **
45659 CAGAGGCTTAATGGCTTTTAAAAATTTAAAAAGGCTCATCTAAG
1 CAGAGGCTCAATAACTTTTAAAAATTTAAAAAGGCTCATCTAAG
* * **
45703 CAGAGGCTCAATAACTTTTGAAAATTTAGAAAGTTTCATCTAAG
1 CAGAGGCTCAATAACTTTTAAAAATTTAAAAAGGCTCATCTAAG
* * * * * *
45747 TAAAAGTTCAACAACTTTTGAAAATTTAAAAAAGGCTCATCTAAG
1 CAGAGGCTCAATAACTTTTAAAAATTT-AAAAAGGCTCATCTAAG
*
45792 CAGAGGCTCAATGA-TTTTAAAAAT
1 CAGAGGCTCAATAACTTTTAAAAAT
45816 CCATCTTGAA
Statistics
Matches: 90, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 68 0.76
45 22 0.24
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (44 bp):
CAGAGGCTCAATAACTTTTAAAAATTTAAAAAGGCTCATCTAAG
Found at i:45900 original size:96 final size:95
Alignment explanation
Indices: 45775--46104 Score: 314
Period size: 96 Copynumber: 3.4 Consensus size: 95
45765 TGAAAATTTA
* * *
45775 AAAAAGGCTCATCTAAGCAGAGGCTCAATGATTTTAAAAATCCATCTTGAAAAATCTCCTCTAAG
1 AAAAA-GCTCTTCTAAGCAGAGGCTCAATGACTTTAAAAATCCATCTTGAAAAAGCTCCTCTAAG
45840 TAGAGGCTCAACAACTTTAACAATCTATCTTG
65 TAGAGGCTCAACAACTTTAA-AATCTATCTTG
* * * *
45872 AAAAAG-TTTCTCTAAGCAGAGGCTCAATGACTTTAAAAATCTTATCTT-AGAAAAGCTCTTCCA
1 AAAAAGCTCT-TCTAAGCAGAGGCTCAATGACTTTAAAAATC-CATCTTGA-AAAAGCTCCTCTA
* *
45935 AGTAGAGGTTCAAAAACTTTAAAAT-TCATCTTG
63 AGTAGAGGCTCAACAACTTTAAAATCT-ATCTTG
* * * ** * *
45968 AAAAAGCTCTTCTAGGCAAAGGTTCAACAACTTT-AAAATTCATTTTGAAAAAGCTCCAT-TAAG
1 AAAAAGCTCTTCTAAGCAGAGGCTCAATGACTTTAAAAATCCATCTTGAAAAAGCTCC-TCTAAG
*
46031 TAAAGGCTCAACAACTTTAAAAATCTTATCTT-
65 TAGAGGCTCAACAACTTT-AAAATC-TATCTTG
* * * **
46063 AGAAAAGCTCCTT-TAAGGAGAGGTTTAACAACTTTAAAAATC
1 A-AAAAGCT-CTTCTAAGCAGAGGCTCAATGACTTTAAAAATC
46105 TCGTCTGTTC
Statistics
Matches: 192, Mismatches: 28, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
94 30 0.16
95 15 0.08
96 96 0.50
97 51 0.27
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (95 bp):
AAAAAGCTCTTCTAAGCAGAGGCTCAATGACTTTAAAAATCCATCTTGAAAAAGCTCCTCTAAGT
AGAGGCTCAACAACTTTAAAATCTATCTTG
Found at i:45977 original size:47 final size:47
Alignment explanation
Indices: 45775--46101 Score: 252
Period size: 48 Copynumber: 6.8 Consensus size: 47
45765 TGAAAATTTA
* * ** * *
45775 AAAAAGGCTCATCTAAGCAGAGGCTCAATGATTTTAAAAATCCATCTTG
1 AAAAA-GCTCTTCTAAGTAGAGGCTCAACAACTTT-AAAATTCATCTTG
* *
45824 AAAAATCTCCTCTAAGTAGAGGCTCAACAACTTTAACAA-TCTATCTTG
1 AAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAA-AATTC-ATCTTG
* * ** *
45872 AAAAAG-TTTCTCTAAGCAGAGGCTCAATGACTTTAAAAATCTTATCTT-
1 AAAAAGCTCT-TCTAAGTAGAGGCTCAACAACTTT-AAAAT-TCATCTTG
* * *
45920 AGAAAAGCTCTTCCAAGTAGAGGTTCAAAAACTTTAAAATTCATCTTG
1 A-AAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCTTG
* * * * *
45968 AAAAAGCTCTTCTAGGCAAAGGTTCAACAACTTTAAAATTCATTTTG
1 AAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCTTG
* * *
46015 AAAAAGCTCCAT-TAAGTAAAGGCTCAACAACTTTAAAAATCTTATCTT-
1 AAAAAGCT-CTTCTAAGTAGAGGCTCAACAACTTT-AAAAT-TCATCTTG
* * *
46063 AGAAAAGCTCCTT-TAAGGAGAGGTTTAACAACTTTAAAA
1 A-AAAAGCT-CTTCTAAGTAGAGGCTCAACAACTTTAAAA
46102 ATCTCGTCTG
Statistics
Matches: 227, Mismatches: 38, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
47 77 0.34
48 78 0.34
49 69 0.30
50 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (47 bp):
AAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCTTG
Found at i:46056 original size:143 final size:144
Alignment explanation
Indices: 45811--46101 Score: 365
Period size: 143 Copynumber: 2.0 Consensus size: 144
45801 AATGATTTTA
* * *
45811 AAAATCCATCTTGAAAAATCTCCTCTAAGTAGAGGCTCAACAACTTTAACAATCTATCTTGAAAA
1 AAAATCCATCTTGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAACAATCTATCTTGAAAA
* * * ** *
45876 AGTTTCTCTAAGCAGAGGCTCAATGACTTTAAAAATCTTATCTTAGAAAAGCT-CTTCCAAGTAG
66 AGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATCTTATCTTAGAAAAGCTCCTT-CAAGGAG
45940 AGGTTCAAAAACTTT
130 AGGTTCAAAAACTTT
* * * * *
45955 AAAATTCATCTTGAAAAAGCTCTTCTAGGCAAAGGTTCAACAACTTTAA-AAT-TCATTTTGAAA
1 AAAATCCATCTTGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAACAATCT-ATCTTGAAA
* *
46018 AAGCTCCAT-TAAGTAAAGGCTCAACAACTTTAAAAATCTTATCTTAGAAAAGCTCCTTTAAGGA
65 AAGCTCC-TCTAAGCAAAGGCTCAACAACTTTAAAAATCTTATCTTAGAAAAGCTCCTTCAAGGA
* *
46082 GAGGTTTAACAACTTT
129 GAGGTTCAAAAACTTT
46098 AAAA
1 AAAA
46102 ATCTCGTCTG
Statistics
Matches: 126, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
142 1 0.01
143 79 0.63
144 46 0.37
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (144 bp):
AAAATCCATCTTGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAACAATCTATCTTGAAAA
AGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATCTTATCTTAGAAAAGCTCCTTCAAGGAGA
GGTTCAAAAACTTT
Found at i:51829 original size:116 final size:116
Alignment explanation
Indices: 51692--51919 Score: 447
Period size: 116 Copynumber: 2.0 Consensus size: 116
51682 TTAACTCTTT
*
51692 TTTTTTTTCTTTTCAAAACTCTATCCGACCCATATCCATCAACTTTTGCACTTCTTGATGGAATT
1 TTTTTTTTCTTCTCAAAACTCTATCCGACCCATATCCATCAACTTTTGCACTTCTTGATGGAATT
51757 GGTGATAACTCTTGATAGAATATCCTAAAGTACCTTTGTGATAATTAACTC
66 GGTGATAACTCTTGATAGAATATCCTAAAGTACCTTTGTGATAATTAACTC
51808 TTTTTTTTCTTCTCAAAACTCTATCCGACCCATATCCATCAACTTTTGCACTTCTTGATGGAATT
1 TTTTTTTTCTTCTCAAAACTCTATCCGACCCATATCCATCAACTTTTGCACTTCTTGATGGAATT
51873 GGTGATAACTCTTGATAGAATATCCTAAAGTACCTTTGTGATAATTA
66 GGTGATAACTCTTGATAGAATATCCTAAAGTACCTTTGTGATAATTA
51920 TAGCTCTCAG
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 111 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (116 bp):
TTTTTTTTCTTCTCAAAACTCTATCCGACCCATATCCATCAACTTTTGCACTTCTTGATGGAATT
GGTGATAACTCTTGATAGAATATCCTAAAGTACCTTTGTGATAATTAACTC
Found at i:57928 original size:169 final size:169
Alignment explanation
Indices: 57643--57951 Score: 358
Period size: 169 Copynumber: 1.8 Consensus size: 169
57633 TATATTGAAG
* * * * *
57643 TTTTTCTATAAATATTTCAATACACTTGTAATATTTAAAAACAAATCTTCTCACCTAGGGATTTC
1 TTTTTCTATAAATACTCCAATACACTAGTAATATTTAAAAACAAATCTTCTCACATAGAGATTTC
* * *
57708 GTAAAGCATCACTACTCAAAATACTTTTAGAATACCATCATTAGTAAAATTTTATTTTTC-TACA
66 GTAAAGCATCACTACTCAAAATACCTTTAGAATACCATCATCAGTAAAA-TTTATTTTCCTTACA
57772 TTTATATTATTATTAGTTTTAATTTATTAGTAAAAAGAAA
130 TTTATATTATTATTAGTTTTAATTTATTAGTAAAAAGAAA
* * * *
57812 TTTTTTTATAAATACTCCAATACAC-AGATAGTATTTAAAAAGAAATCTTTTCACATAGAGATTT
1 TTTTTCTATAAATACTCCAATACACTAG-TAATATTTAAAAACAAATCTTCTCACATAGAGATTT
* * *** * *
57876 CGT-AGGTATCACTACTTTGAGTACCTTT-GAAT-CTCATCATCAGATAAAAATTTCTTTTCCTT
65 CGTAAAGCATCACTACTCAAAATACCTTTAGAATAC-CATCATCAG-T-AAAATTTATTTTCCTT
*
57938 ACATTTTTATTATT
127 ACATTTATATTATT
57952 TTTATTTAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
166 1 0.01
167 12 0.10
168 28 0.24
169 74 0.64
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.42
Consensus pattern (169 bp):
TTTTTCTATAAATACTCCAATACACTAGTAATATTTAAAAACAAATCTTCTCACATAGAGATTTC
GTAAAGCATCACTACTCAAAATACCTTTAGAATACCATCATCAGTAAAATTTATTTTCCTTACAT
TTATATTATTATTAGTTTTAATTTATTAGTAAAAAGAAA
Found at i:60921 original size:10 final size:9
Alignment explanation
Indices: 60901--60925 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
60891 TTATATTGCA
60901 TTTTTTATT
1 TTTTTTATT
60910 TTTTTTATT
1 TTTTTTATT
60919 TTTTTTA
1 TTTTTTA
60926 AAAAATGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTATT
Found at i:70771 original size:19 final size:19
Alignment explanation
Indices: 70739--70785 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
70729 CACCAATCTT
70739 TTTTCTTTTCATTT-TTGGG
1 TTTT-TTTTCATTTGTTGGG
* *
70758 TTTGTTTTTTATTTGTTTGG
1 TTT-TTTTTCATTTGTTGGG
70778 TTTTTTTT
1 TTTTTTTT
70786 ATTGAAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.04, C:0.04, G:0.15, T:0.77
Consensus pattern (19 bp):
TTTTTTTTCATTTGTTGGG
Found at i:70937 original size:257 final size:256
Alignment explanation
Indices: 70482--70999 Score: 901
Period size: 257 Copynumber: 2.0 Consensus size: 256
70472 CATATGAAAA
70482 TTTTTCTTTTCATTTTTGGGTTTGTTTTTGATTTGTTTGGTTTTTTTATTGAAAGTAAAAAGAAT
1 TTTTTCTTTTCATTTTTGGGTTTGTTTTTGATTTGTTTGGTTTTTTTATTGAAAGTAAAAAGAAT
* * * *
70547 CCAGGAATTAAAAATTAAATATCGATTAAGACTGTTTAAATCAAAATTTGAGGATAACACATAGT
66 CCAAGAATTAAAAACTAAATACCGATTAAGACTGTTTAAATCAAAATTTGAAGATAACACATAGT
*
70612 TCATTTTGGCCTGACTCTCGAAAACAAATGACCTCCCCAATGGAGTCGCTAAGCTATTATAACAG
131 TCATTTTGGCCTGACTCTCGAAAACAAATGACCTCCCCAATGGAGTCACTAAGCTATTATAACAG
*
70677 TTTTGTGTCCACCTGACGAATTTGGAAATAAAATAAAAAATAACGAAGTCACCACCAATCT
196 TTTTGTGTCCACCCGACGAATTTGGAAATAAAATAAAAAATAACGAAGTCACCACCAATCT
*
70738 TTTTTCTTTTCATTTTTGGGTTTGTTTTTTATTTGTTTGGTTTTTTTTATTGAAAGTAAAAAGAA
1 TTTTTCTTTTCATTTTTGGGTTTGTTTTTGATTTGTTTGG-TTTTTTTATTGAAAGTAAAAAGAA
*
70803 TCTAAGAATTAAAAACTAAATACCGATTAAGACTGTTTAAATCAAAATTTGAAGATAACACATAG
65 TCCAAGAATTAAAAACTAAATACCGATTAAGACTGTTTAAATCAAAATTTGAAGATAACACATAG
* * * * *
70868 TTCATTTTGGTCTGACTCTCGAAAACTAATGACTTCCCCAGTGGAGTCATTAAGCTATTATAACA
130 TTCATTTTGGCCTGACTCTCGAAAACAAATGACCTCCCCAATGGAGTCACTAAGCTATTATAACA
*
70933 GTTTTGTGTCCACCCGACGAATTTGGAAATAAAATAAAAAATAACGAAGTCACCATCAATCT
195 GTTTTGTGTCCACCCGACGAATTTGGAAATAAAATAAAAAATAACGAAGTCACCACCAATCT
70995 TTTTT
1 TTTTT
71000 GGCTAGGTGT
Statistics
Matches: 247, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
256 39 0.16
257 208 0.84
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (256 bp):
TTTTTCTTTTCATTTTTGGGTTTGTTTTTGATTTGTTTGGTTTTTTTATTGAAAGTAAAAAGAAT
CCAAGAATTAAAAACTAAATACCGATTAAGACTGTTTAAATCAAAATTTGAAGATAACACATAGT
TCATTTTGGCCTGACTCTCGAAAACAAATGACCTCCCCAATGGAGTCACTAAGCTATTATAACAG
TTTTGTGTCCACCCGACGAATTTGGAAATAAAATAAAAAATAACGAAGTCACCACCAATCT
Found at i:71915 original size:187 final size:186
Alignment explanation
Indices: 71592--71929 Score: 396
Period size: 187 Copynumber: 1.8 Consensus size: 186
71582 AGGAAAAAGG
* * *
71592 AATTTTTATTATATTGAAGTTTTTCTATAAATATTCCAATACATTGGTAATATTTAAAAAAAAAT
1 AATTTTTATTATATTGAAATTTTTCTATAAATACTCCAATACACTGGTAATATTTAAAAAAAAAT
* ** * * *
71657 CTCCTCACCTATAGATTTTGTAAAGCACCATTACTCAAAATACTTTTAGAATCCCATCACTGGAT
66 CTCCTCACCTAGAGATTTCATAAAGCACCACTACTCAAAATACCTTTAGAATCCCATCACTAGAT
* *
71722 AAAATTTCTTTTTTCTACATTTATACTATATTATTTTAATTTATTAGTAAGAAGAAA
131 AAAATTTCCTTTCT-TACATTTATACTATATTATTTTAATTTATTAGTAAGAAGAAA
* *
71779 AATTTTTATTATGTTGAAAATTTTT-TATAAATACTCCAATACACTGGTATTATTTAAAAAAAAA
1 AATTTTTATTATATTG-AAATTTTTCTATAAATACTCCAATACACTGGTAATATTT-AAAAAAAA
* * * * *** * **
71843 ATCTTCTCACCTAGAGATTTCAT-AGGTATCACTACTTGGAGTACCTTT-GAATTTCATCA-TCA
64 ATCTCCTCACCTAGAGATTTCATAAAGCACCACTACTCAAAATACCTTTAGAATCCCATCACT-A
71905 GATAAAAATTTCCTTTCTTACATTT
128 GAT-AAAATTTCCTTTCTTACATTT
71930 TTATTATTTT
Statistics
Matches: 124, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
185 1 0.01
186 19 0.15
187 70 0.56
188 34 0.27
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (186 bp):
AATTTTTATTATATTGAAATTTTTCTATAAATACTCCAATACACTGGTAATATTTAAAAAAAAAT
CTCCTCACCTAGAGATTTCATAAAGCACCACTACTCAAAATACCTTTAGAATCCCATCACTAGAT
AAAATTTCCTTTCTTACATTTATACTATATTATTTTAATTTATTAGTAAGAAGAAA
Found at i:73085 original size:18 final size:17
Alignment explanation
Indices: 73060--73093 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
73050 CAAAAAATAA
*
73060 AAAGAAGAAGGAAAAAG
1 AAAGAAGAAAGAAAAAG
73077 AAAGAAAGAAAGAAAAA
1 AAAG-AAGAAAGAAAAA
73094 AAAATATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAAGAAAAAG
Found at i:76205 original size:19 final size:19
Alignment explanation
Indices: 76173--76219 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
76163 ATATGAAAAT
76173 TTTTCTTTTCATTT-TTGGG
1 TTTT-TTTTCATTTGTTGGG
* *
76192 TTTGTTTTTGATTTGTTTGG
1 TTT-TTTTTCATTTGTTGGG
76212 TTTTTTTT
1 TTTTTTTT
76220 ATTGAAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.04, C:0.04, G:0.17, T:0.74
Consensus pattern (19 bp):
TTTTTTTTCATTTGTTGGG
Found at i:76219 original size:20 final size:19
Alignment explanation
Indices: 76172--76219 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
76162 CATATGAAAA
76172 TTTTTCTTTTCATTTTTGGG
1 TTTTT-TTTTCATTTTTGGG
* * *
76192 TTTGTTTTTGATTTGTTTGG
1 TTTTTTTTTCATTT-TTGGG
76212 TTTTTTTT
1 TTTTTTTT
76220 ATTGAAAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.04, C:0.04, G:0.17, T:0.75
Consensus pattern (19 bp):
TTTTTTTTTCATTTTTGGG
Found at i:78501 original size:19 final size:18
Alignment explanation
Indices: 78479--78546 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 18
78469 ATCAGAACAG
78479 AAAATAAAAAGAAGAAGGAA
1 AAAATAAAAAGAA-AA-GAA
78499 AAAATGAAAAA-AAAATGAA
1 AAAAT-AAAAAGAAAA-GAA
*
78518 AAAATGAAAAGAAAAAGAA
1 AAAATAAAAAG-AAAAGAA
*
78537 AAAAGAAAAA
1 AAAATAAAAA
78547 AGATAATAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.10
19 21 0.51
20 11 0.27
21 5 0.12
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (18 bp):
AAAATAAAAAGAAAAGAA
Found at i:78513 original size:11 final size:11
Alignment explanation
Indices: 78497--78540 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
78487 AAGAAGAAGG
78497 AAAAAATGAAA
1 AAAAAATGAAA
78508 AAAAAATG---
1 AAAAAATGAAA
78516 AAAAAATGAAA
1 AAAAAATGAAA
78527 AGAAAAA-GAAA
1 A-AAAAATGAAA
78538 AAA
1 AAA
78541 GAAAAAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
8 8 0.28
10 2 0.07
11 14 0.48
12 5 0.17
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (11 bp):
AAAAAATGAAA
Found at i:78557 original size:3 final size:3
Alignment explanation
Indices: 78549--78586 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
78539 AAGAAAAAAG
* *
78549 ATA ATA ATA ATT ATA ATA ATA ACA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
78587 CAAAATGGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:79608 original size:61 final size:60
Alignment explanation
Indices: 79269--79607 Score: 452
Period size: 60 Copynumber: 5.7 Consensus size: 60
79259 TTATAAAAGA
* * * * * *
79269 AAAATTGATACTTTCAACTTTTCCTTGAAAATATTTTTTTTTTGAAAATTTTATGTTGAAGG
1 AAAATTGATACTTTCAACTTTTCC-TCAAAA-ATATATTTTTTGAAATTTTTATTTTCAAGG
** ** *
79331 AAAATTGATACTTTCAA-TTTTCC-CTTAAA-ATGCTTTTTGAAAATTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAATTTTTATTTTCAAGG
* * *
79388 AAAATTGATACTTTCATCTTTTCGTCAAAAATATATTTTTTGAAATTTTTATTTTGAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAATTTTTATTTTCAAGG
* *
79448 AAAATTCATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAATTTTTATTTTCAAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAATTTTTATTTTCAAGG
79508 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTCTT-AAAGTTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT-TTGAAA-TTTTTATTTTCAAGG
* *
79569 AAAATTGATACTTTCAACTTTTTCTCAAAAATACATTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT
79608 CAAAATTTTT
Statistics
Matches: 247, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
57 39 0.16
58 6 0.02
59 6 0.02
60 120 0.49
61 59 0.24
62 17 0.07
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAATTTTTATTTTCAAGG
Found at i:80943 original size:43 final size:43
Alignment explanation
Indices: 80881--81258 Score: 224
Period size: 44 Copynumber: 8.3 Consensus size: 43
80871 CTACAAAGGT
* *
80881 TCAACGACATTTTTAAAAATTTAAAAAGCTCCTTTGAA-TAGAGGC
1 TCAACGAC--TTTTGAAAATTTAAAAAGCTCCTCT-AAGTAGAGGC
* * *
80926 TCAATGACTTTTGAAAATTTAAAGAGGCTCCTCTAAGTAGAGGT
1 TCAACGACTTTTGAAAATTTAAA-AAGCTCCTCTAAGTAGAGGC
* * * *
80970 TTAACGACTTTT-AAAATTTTGAAAAAGCTCATCTAAGCAGAAGC
1 TCAACGACTTTTGAAAA-TTT-AAAAAGCTCCTCTAAGTAGAGGC
* * * *
81014 TCAACAACTTTTGAAAATTTAAAAAGTCTCATCTAAGCAAAGGC
1 TCAACGACTTTTGAAAATTTAAAAAG-CTCCTCTAAGTAGAGGC
* * ** * *
81058 TCAACAACTTTTGAAAATTTTTAAAAGGCTTTTCTAAGCAAAGGC
1 TCAACGACTTTTGAAAA--TTTAAAAAGCTCCTCTAAGTAGAGGC
* *
81103 TCAACAAC-TTTGAAAATCCATATTGAAAAATCTCCTCTAAGTAGAGGC
1 TCAACGACTTTTG-AAA---AT-TT-AAAAAGCTCCTCTAAGTAGAGGC
* * * *
81151 TCAACAAC-TTTAACAATCCATCTTGAAAAAGTTCCTCTAAGCAGAGGC
1 TCAACGACTTTTGA-AA---AT-TT-AAAAAGCTCCTCTAAGTAGAGGC
** *
81199 TCAACGACTTTAAAAATCTTATCTTAGAAAAGCTCCTCTAAGTAGAGGT
1 TCAACGACTTTTGAAA----AT-TTA-AAAAGCTCCTCTAAGTAGAGGC
*
81248 TCAACAACTTT
1 TCAACGACTTT
81259 AAAATTCATC
Statistics
Matches: 276, Mismatches: 39, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
43 26 0.09
44 91 0.33
45 40 0.14
46 9 0.03
47 3 0.01
48 69 0.25
49 38 0.14
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (43 bp):
TCAACGACTTTTGAAAATTTAAAAAGCTCCTCTAAGTAGAGGC
Found at i:80967 original size:44 final size:43
Alignment explanation
Indices: 80891--81353 Score: 218
Period size: 48 Copynumber: 10.1 Consensus size: 43
80881 TCAACGACAT
* * * * **
80891 TTTTAAAAATTTAAAAAGCTCCTTTGAA-TAGAGGCTCAATGAC
1 TTTTGAAAATTTAAAAAGCTCATCT-AAGCAGAGGCTCAACAAC
* * * * * *
80934 TTTTGAAAATTTAAAGAGGCTCCTCTAAGTAGAGGTTTAACGAC
1 TTTTGAAAATTTAAA-AAGCTCATCTAAGCAGAGGCTCAACAAC
*
80978 TTTT-AAAATTTTGAAAAAGCTCATCTAAGCAGAAGCTCAACAAC
1 TTTTGAAAA-TTT-AAAAAGCTCATCTAAGCAGAGGCTCAACAAC
*
81022 TTTTGAAAATTTAAAAAGTCTCATCTAAGCAAAGGCTCAACAAC
1 TTTTGAAAATTTAAAAAG-CTCATCTAAGCAGAGGCTCAACAAC
* ** *
81066 TTTTGAAAATTTTTAAAAGGCTTTTCTAAGCAAAGGCTCAACAAC
1 TTTTGAAAA--TTTAAAAAGCTCATCTAAGCAGAGGCTCAACAAC
* * *
81111 -TTTGAAAATCCATATTGAAAAATCTCCTCTAAGTAGAGGCTCAACAAC
1 TTTTG-AAA---AT-TT-AAAAAGCTCATCTAAGCAGAGGCTCAACAAC
* * * *
81159 -TTTAACAATCCATCTTGAAAAAGTTCCTCTAAGCAGAGGCTCAACGAC
1 TTTTGA-AA---AT-TT-AAAAAGCTCATCTAAGCAGAGGCTCAACAAC
** * * *
81207 TTTAAAAATCTTATCTTAGAAAAGCTCCTCTAAGTAGAGGTTCAACAAC
1 TTTTGAAA----AT-TTA-AAAAGCTCATCTAAGCAGAGGCTCAACAAC
* * *
81256 -TTTAAAATTCATCTTGAAAAAGCTTC-TCTTAGCAAAGGCTCAACAAC
1 TTTTGAAA---AT-TT-AAAAAGC-TCATCTAAGCAGAGGCTCAACAAC
** * * *
81303 TTTAAAAATCCATCTTGAAAAAGCTCATCTAAGTAGAAGTTCAACAAC
1 TTTTGAAA---AT-TT-AAAAAGCTCATCTAAGCAGAGGCTCAACAAC
81351 TTT
1 TTT
81354 AAAATTCATC
Statistics
Matches: 346, Mismatches: 52, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
43 26 0.08
44 91 0.26
45 33 0.10
46 9 0.03
47 34 0.10
48 118 0.34
49 35 0.10
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (43 bp):
TTTTGAAAATTTAAAAAGCTCATCTAAGCAGAGGCTCAACAAC
Found at i:81158 original size:48 final size:47
Alignment explanation
Indices: 80952--81456 Score: 449
Period size: 48 Copynumber: 10.8 Consensus size: 47
80942 ATTTAAAGAG
* * * * *
80952 GCTCCTCTAAGTAGAGGTTTAACGACTTTTAAAAT--T-TTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCATCTTGAAAAA
* * **
80996 GCTCATCTAAGCAGAAGCTCAACAACTTTTGAAA--AT-TT-AAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCATCTTGAAAAA
* * * * *
81039 GTCTCATCTAAGCAAAGGCTCAACAACTTTTGAAAAT--T-TTTAAAAG
1 G-CTCCTCTAAGCAGAGGCTCAACAAC-TTTAAAAATCATCTTGAAAAA
** * * *
81085 GCTTTTCTAAGCAAAGGCTCAACAACTTTGAAAATCCATATTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAAT-CATCTTGAAAAA
* * *
81133 TCTCCTCTAAGTAGAGGCTCAACAACTTTAACAATCCATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAAT-CATCTTGAAAAA
* *
81181 GTTCCTCTAAGCAGAGGCTCAACGACTTTAAAAATCTTATCTT-AGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATC--ATCTTGA-AAAA
* * *
81230 GCTCCTCTAAGTAGAGGTTCAACAACTTTAAAATTCATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCATCTTGAAAAA
* * *
81277 GCTTCTCTTAGCAAAGGCTCAACAACTTTAAAAATCCATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAAT-CATCTTGAAAAA
* * * * *
81325 GCTCATCTAAGTAGAAGTTCAACAACTTTAAAATTCATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCATCTTGAAAAA
* * *
81372 GCTCCTTTAAGTAAAGGCTCAACAACTTTAAAAATCTTATCTT-AGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATC--ATCTTGA-AAAA
* * * *
81421 GCTCCTCTAAGGAGAGGTTTATCAACTTTAAAAATC
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATC
81457 CCATCTGTTC
Statistics
Matches: 384, Mismatches: 60, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
43 6 0.02
44 62 0.16
45 32 0.08
46 5 0.01
47 82 0.21
48 118 0.31
49 79 0.21
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.29
Consensus pattern (47 bp):
GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCATCTTGAAAAA
Found at i:101012 original size:12 final size:12
Alignment explanation
Indices: 100997--101035 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
100987 TATCAAAAAA
*
100997 ATTTTATTATAT
1 ATTTTATTATTT
*
101009 ATTTCATTATTT
1 ATTTTATTATTT
101021 ATTTT-TTATTT
1 ATTTTATTATTT
101032 ATTT
1 ATTT
101036 CAACAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTTATTATTT
Found at i:102065 original size:10 final size:10
Alignment explanation
Indices: 102039--102094 Score: 67
Period size: 10 Copynumber: 5.3 Consensus size: 10
102029 CGATCATAAC
*
102039 AAAAAATAAA
1 AAAAAAGAAA
102049 AAGAAGAAGGAAA
1 AA-AA-AA-GAAA
*
102062 AAGAAAGAAA
1 AAAAAAGAAA
102072 AAAAAAGAAA
1 AAAAAAGAAA
102082 AAAAAAGAAA
1 AAAAAAGAAA
102092 AAA
1 AAA
102095 TATAATAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
10 28 0.70
11 4 0.10
12 3 0.08
13 5 0.12
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:102069 original size:14 final size:14
Alignment explanation
Indices: 102041--102087 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
102031 ATCATAACAA
102041 AAAATAAAAAG-AAG
1 AAAA-AAAAAGAAAG
**
102055 AAGGAAAAAGAAAG
1 AAAAAAAAAGAAAG
102069 AAAAAAAAAGAAA-
1 AAAAAAAAAGAAAG
102082 AAAAAA
1 AAAAAA
102088 GAAAAAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 12 0.43
14 16 0.57
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAGAAAG
Found at i:102872 original size:61 final size:59
Alignment explanation
Indices: 102803--103215 Score: 447
Period size: 60 Copynumber: 6.9 Consensus size: 59
102793 TGCTTTTATA
* *
102803 CAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTGAAAATTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTT-TTGAAAATTTTATTTT
* * ** *
102863 CCAAGGAAAATTGATACTTTCAACTTTTCTTTAAAAATGTTTTTTTTTTTAAATTTTATGTT
1 -CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAA--TATTTTTTTGAAAATTTTATTTT
**
102925 CAAGGAAAATTGATACTTTCAA-TTTTCCCTT-AAAAT-GCTTTTTGAAAATTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTT-CCTTAAAAATATTTTTTTGAAAATTTTATTTT
*
102982 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATATTTTTTGAAAATTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATAT-TTTTTTGAAAATTTTATTTT
* * * * * * *
103042 TAAAGAAAATTAATACTTTTAACTTTTTCTCAAAAATATATTTTTTGAAATTTTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATAT-TTTTTTGAAAATTTTATTTT
* ** * * ** *
103102 TAAAAAAAATTGATACTTTCAACGTTTACTTAAAAATATATTTTCTTGAAGTTTTTATTTA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATAT-TTTT-TTGAAAATTTTATTTT
* ** * *
103163 AAAAAAAAATTAATACTTTTAACTTTTCCTTAAAAATATTTTTTT-AAAATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTT
103216 TATGCTTTAA
Statistics
Matches: 306, Mismatches: 38, Indels: 19
0.84 0.10 0.05
Matches are distributed among these distances:
57 41 0.13
58 16 0.05
59 2 0.01
60 121 0.40
61 107 0.35
62 13 0.04
63 6 0.02
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.48
Consensus pattern (59 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTATTTT
Found at i:105173 original size:17 final size:17
Alignment explanation
Indices: 105153--105235 Score: 73
Period size: 17 Copynumber: 4.9 Consensus size: 17
105143 ACAGGATTCA
*
105153 AAATTCACAAGAATTTC
1 AAATTCACAAGAATTGC
** *
105170 AAATTCGTAA-AATTGG
1 AAATTCACAAGAATTGC
105186 AAATTCACAAGAATTG-
1 AAATTCACAAGAATTGC
*
105202 AAGATTCGCAAGAATTG-
1 AA-ATTCACAAGAATTGC
*
105219 AAGATTCGCAAGAATTG
1 AA-ATTCACAAGAATTG
105236 AAGATTTGCA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
16 14 0.25
17 43 0.75
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.27
Consensus pattern (17 bp):
AAATTCACAAGAATTGC
Found at i:105195 original size:33 final size:34
Alignment explanation
Indices: 105153--105247 Score: 99
Period size: 34 Copynumber: 2.9 Consensus size: 34
105143 ACAGGATTCA
*
105153 AAATTCACAAGAATTTCAA-ATTCGTAA-AATTGG
1 AAATTCACAAGAATTTCAAGATTCGCAAGAATT-G
*
105186 AAATTCACAAGAA-TTGAAGATTCGCAAGAATTG
1 AAATTCACAAGAATTTCAAGATTCGCAAGAATTG
* * *
105219 AAGATTCGCAAGAA-TTGAAGATTTGCAAG
1 AA-ATTCACAAGAATTTCAAGATTCGCAAG
105248 GCTTTCAGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
32 4 0.07
33 23 0.42
34 28 0.51
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (34 bp):
AAATTCACAAGAATTTCAAGATTCGCAAGAATTG
Found at i:105231 original size:34 final size:34
Alignment explanation
Indices: 105188--105510 Score: 206
Period size: 34 Copynumber: 9.5 Consensus size: 34
105178 AAAATTGGAA
**
105188 ATTCACAAGAATTGAAGATTCGC-AAGAATTGAAG
1 ATTCACAAGAATTGAAGATTCGCAAAG-ATTTCAG
* * * *
105222 ATTCGCAAGAATTGAAGATTTGCAAGGCTTTCAG
1 ATTCACAAGAATTGAAGATTCGCAAAGATTTCAG
** * * *
105256 ATTCGTAAGAGTTTG-AGATTTGCAAAGTTTTCAG
1 ATTCACAAGA-ATTGAAGATTCGCAAAGATTTCAG
* * * *
105290 ATTCACAAGAATTGGAGATTTGCAAAGTTTTCAT
1 ATTCACAAGAATTGAAGATTCGCAAAGATTTCAG
* * * *
105324 ATTCGCAAGAATTGAAGATTTGCAAAGTTTTTAG
1 ATTCACAAGAATTGAAGATTCGCAAAGATTTCAG
* * *
105358 ATTCATAA-ATATTGAAGATTCGCAAGGCTTTCAG
1 ATTCACAAGA-ATTGAAGATTCGCAAAGATTTCAG
*** * * *
105392 ATTTGTAAGAATTGAAGATTCAC-AAGACATTCAA
1 ATTCACAAGAATTGAAGATTCGCAAAGA-TTTCAG
* * * * *
105426 ATTCACAAGAATTGTATATTCACAAGGCTTTCAG
1 ATTCACAAGAATTGAAGATTCGCAAAGATTTCAG
** * * *
105460 ATTCGTAAGAAATAAAGATTCGCAGAA-ACTTTTAG
1 ATTCACAAGAATTGAAGATTCGCA-AAGA-TTTCAG
*
105495 ATTCACAAAAATTGAA
1 ATTCACAAGAATTGAA
105511 AAAAACTTCT
Statistics
Matches: 225, Mismatches: 55, Indels: 17
0.76 0.19 0.06
Matches are distributed among these distances:
33 6 0.03
34 194 0.86
35 25 0.11
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.31
Consensus pattern (34 bp):
ATTCACAAGAATTGAAGATTCGCAAAGATTTCAG
Found at i:105236 original size:17 final size:17
Alignment explanation
Indices: 105188--105247 Score: 102
Period size: 17 Copynumber: 3.5 Consensus size: 17
105178 AAAATTGGAA
*
105188 ATTCACAAGAATTGAAG
1 ATTCGCAAGAATTGAAG
105205 ATTCGCAAGAATTGAAG
1 ATTCGCAAGAATTGAAG
105222 ATTCGCAAGAATTGAAG
1 ATTCGCAAGAATTGAAG
*
105239 ATTTGCAAG
1 ATTCGCAAG
105248 GCTTTCAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (17 bp):
ATTCGCAAGAATTGAAG
Found at i:105299 original size:68 final size:68
Alignment explanation
Indices: 105194--105510 Score: 286
Period size: 68 Copynumber: 4.6 Consensus size: 68
105184 GGAAATTCAC
* * ** * *
105194 AAGAATTGAAGATTCGC-AAGAATTGAAGATTCGCAAGAATTGAAGATTTGCAAGGCTTTCAGAT
1 AAGAATTGAAGATTTGCAAAG-TTTTCAGATTCACAAGAATTGAAGATTCGCAAGGCTTTCAGAT
105258 TCGT
65 TCGT
* * * * * *
105262 AAGAGTTTG-AGATTTGCAAAGTTTTCAGATTCACAAGAATTGGAGATTTGCAAAGTTTTCATAT
1 AAGA-ATTGAAGATTTGCAAAGTTTTCAGATTCACAAGAATTGAAGATTCGCAAGGCTTTCAGAT
*
105326 TCGC
65 TCGT
* *
105330 AAGAATTGAAGATTTGCAAAGTTTTTAGATTCATAA-ATATTGAAGATTCGCAAGGCTTTCAGAT
1 AAGAATTGAAGATTTGCAAAGTTTTCAGATTCACAAGA-ATTGAAGATTCGCAAGGCTTTCAGAT
*
105394 TTGT
65 TCGT
** * * * *
105398 AAGAATTGAAGA-TT-CACAAGACATTCAAATTCACAAGAATTGTATATTCACAAGGCTTTCAGA
1 AAGAATTGAAGATTTGCA-AAG-TTTTCAGATTCACAAGAATTGAAGATTCGCAAGGCTTTCAGA
105461 TTCGT
64 TTCGT
* * * * *
105466 AAGAAATAAAGATTCGCAGAAACTTTT-AGATTCACAAAAATTGAA
1 AAGAATTGAAGATTTGC--AAAGTTTTCAGATTCACAAGAATTGAA
105511 AAAAACTTCT
Statistics
Matches: 199, Mismatches: 39, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
66 2 0.01
67 9 0.05
68 159 0.80
69 23 0.12
70 3 0.02
71 2 0.01
72 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (68 bp):
AAGAATTGAAGATTTGCAAAGTTTTCAGATTCACAAGAATTGAAGATTCGCAAGGCTTTCAGATT
CGT
Found at i:105418 original size:17 final size:16
Alignment explanation
Indices: 105398--105451 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
105388 TCAGATTTGT
105398 AAGAATTGAAGATTCAC
1 AAGAATTGAA-ATTCAC
*
105415 AAGACATTCAAATTCAC
1 AAGA-ATTGAAATTCAC
*
105432 AAGAATTGTATATTCAC
1 AAGAATTG-AAATTCAC
105449 AAG
1 AAG
105452 GCTTTCAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 3 0.09
17 24 0.75
18 5 0.16
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (16 bp):
AAGAATTGAAATTCAC
Found at i:105463 original size:17 final size:17
Alignment explanation
Indices: 105407--105463 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
105397 TAAGAATTGA
*
105407 AGATTCACAAGACATTC
1 AGATTCACAAGACTTTC
* *
105424 AAATTCACAAGAATTGT-
1 AGATTCACAAGACTT-TC
* *
105441 ATATTCACAAGGCTTTC
1 AGATTCACAAGACTTTC
105458 AGATTC
1 AGATTC
105464 GTAAGAAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
16 1 0.03
17 29 0.94
18 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (17 bp):
AGATTCACAAGACTTTC
Found at i:106720 original size:15 final size:14
Alignment explanation
Indices: 106696--106792 Score: 68
Period size: 15 Copynumber: 7.3 Consensus size: 14
106686 CAATTTAAGT
*
106696 TTTTCTTTTTCTCTA
1 TTTTCATTTT-TCTA
106711 TTTTCATTTTT-TCA
1 TTTTCATTTTTCT-A
*
106725 TTTTTCATTTTTCATT
1 -TTTTCATTTTTC-TA
106741 TTTTCATTTTTCT-
1 TTTTCATTTTTCTA
*
106754 TGTTC-TTTTT-T-
1 TTTTCATTTTTCTA
106765 TTTTCATTTTTC-A
1 TTTTCATTTTTCTA
106778 TTTT--TTTTTCT-
1 TTTTCATTTTTCTA
106789 TTTT
1 TTTT
106793 TTCTCATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 20
0.74 0.04 0.21
Matches are distributed among these distances:
11 15 0.21
12 10 0.14
13 9 0.13
14 3 0.04
15 32 0.46
17 1 0.01
ACGTcount: A:0.08, C:0.13, G:0.01, T:0.77
Consensus pattern (14 bp):
TTTTCATTTTTCTA
Found at i:106720 original size:22 final size:21
Alignment explanation
Indices: 106695--106807 Score: 78
Period size: 18 Copynumber: 5.4 Consensus size: 21
106685 TCAATTTAAG
106695 TTTTTCTTTTTCTCTATTTTCA
1 TTTTTCTTTTTCTCT-TTTTCA
*
106717 TTTTTTCATTTTTC-ATTTTTCA
1 -TTTTTC-TTTTTCTCTTTTTCA
* *
106739 TTTTTTCATTTT-TCTTGTTC-
1 -TTTTTCTTTTTCTCTTTTTCA
*
106759 TTTTT-TTTTTC-ATTTTTCA
1 TTTTTCTTTTTCTCTTTTTCA
*
106778 -TTTT-TTTTTCTTTTTTTCTCA
1 TTTTTCTTTTTC-TCTTTT-TCA
106799 TTTTTCTTT
1 TTTTTCTTT
106808 CTTTCATTCT
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
18 19 0.26
19 5 0.07
20 4 0.05
21 12 0.16
22 17 0.23
23 10 0.14
24 6 0.08
ACGTcount: A:0.08, C:0.14, G:0.01, T:0.77
Consensus pattern (21 bp):
TTTTTCTTTTTCTCTTTTTCA
Found at i:106721 original size:7 final size:7
Alignment explanation
Indices: 106711--106821 Score: 90
Period size: 7 Copynumber: 15.9 Consensus size: 7
106701 TTTTTCTCTA
106711 TTTTCATT
1 TTTTCA-T
106719 TTTTCAT
1 TTTTCAT
106726 TTTTCAT
1 TTTTCAT
106733 TTTTCATT
1 TTTTCA-T
106741 TTTTCAT
1 TTTTCAT
106748 TTTTC-T
1 TTTTCAT
*
106754 TGTTC-T
1 TTTTCAT
106760 TTTT--T
1 TTTTCAT
106765 TTTTCAT
1 TTTTCAT
106772 TTTTCAT
1 TTTTCAT
106779 TTTT--T
1 TTTTCAT
**
106784 TTTCTTTT
1 TTT-TCAT
106792 TTTCTCAT
1 TTT-TCAT
*
106800 TTTTCTT
1 TTTTCAT
106807 TCTTTCAT
1 T-TTTCAT
106815 TCTTTCA
1 T-TTTCA
106822 CCTATCATTA
Statistics
Matches: 90, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
5 9 0.10
6 10 0.11
7 36 0.40
8 35 0.39
ACGTcount: A:0.09, C:0.15, G:0.01, T:0.75
Consensus pattern (7 bp):
TTTTCAT
Found at i:106752 original size:46 final size:42
Alignment explanation
Indices: 106719--106821 Score: 85
Period size: 39 Copynumber: 2.5 Consensus size: 42
106709 TATTTTCATT
* *
106719 TTTTCATTTTTCATTTTTCATTTTTTCATTTTTC-TTGT-TC--
1 TTTTCTTTTTTCATTTTTCATTTTTT--TTTTTCTTTTTCTCTA
106759 TTTT-TTTTTTCATTTTTCATTTTTTTTTCTT-TTTTTCTC-A
1 TTTTCTTTTTTCATTTTTCATTTTTTTTT-TTCTTTTTCTCTA
106799 TTTTTCTTTCTTTCATTCTTTCA
1 -TTTTCTTT-TTTCATT-TTTCA
106822 CCTATCATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
37 3 0.06
38 5 0.09
39 22 0.42
40 4 0.08
41 4 0.08
42 3 0.06
43 7 0.13
44 5 0.09
ACGTcount: A:0.09, C:0.16, G:0.01, T:0.75
Consensus pattern (42 bp):
TTTTCTTTTTTCATTTTTCATTTTTTTTTTTCTTTTTCTCTA
Found at i:106768 original size:18 final size:19
Alignment explanation
Indices: 106725--106786 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
106715 CATTTTTTCA
*
106725 TTTTTCATTTTTCATTTTTT
1 TTTTTCATTGTTCA-TTTTT
106745 CATTTTTC-TTGTTC-TTTTT
1 --TTTTTCATTGTTCATTTTT
*
106764 TTTTTCATTTTTCATTTTT
1 TTTTTCATTGTTCATTTTT
106783 TTTT
1 TTTT
106787 CTTTTTTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 6 0.17
18 5 0.14
19 14 0.39
21 5 0.14
22 6 0.17
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTTTCATTGTTCATTTTT
Found at i:106791 original size:8 final size:8
Alignment explanation
Indices: 106695--106812 Score: 59
Period size: 8 Copynumber: 14.8 Consensus size: 8
106685 TCAATTTAAG
106695 TTTTTCTT
1 TTTTTCTT
*
106703 TTTCTC-T
1 TTTTTCTT
* *
106710 ATTTTCAT
1 TTTTTCTT
*
106718 TTTTTC-A
1 TTTTTCTT
*
106725 TTTTTC-A
1 TTTTTCTT
*
106732 TTTTTCAT
1 TTTTTCTT
*
106740 TTTTTC-A
1 TTTTTCTT
106747 TTTTTCTT
1 TTTTTCTT
106755 GTTCTTT-TT
1 -TT-TTTCTT
106764 TTTTTCATT
1 TTTTTC-TT
106773 TTTCATT-TT
1 TTT--TTCTT
106782 TTTTTCTT
1 TTTTTCTT
*
106790 TTTTTCTCA
1 TTTTTCT-T
106799 TTTTTCTT
1 TTTTTCTT
*
106807 TCTTTC
1 TTTTTC
106813 ATTCTTTCAC
Statistics
Matches: 88, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
7 29 0.33
8 33 0.38
9 21 0.24
10 3 0.03
11 2 0.02
ACGTcount: A:0.08, C:0.15, G:0.01, T:0.76
Consensus pattern (8 bp):
TTTTTCTT
Found at i:110924 original size:121 final size:119
Alignment explanation
Indices: 110774--111145 Score: 434
Period size: 121 Copynumber: 3.1 Consensus size: 119
110764 TTTAAAGCAC
* *
110774 TTTGACATTTCTATTTTCAAGGAAAATTGATAGTTTCAACTTTTCCTTAAAAATGT-TTTTCTTG
1 TTTGAAATTT-TATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTATTTT-TTG
* *
110838 AAAATTTTATTTTCTAAGAAAAATTGATACTTTCAACTTTTCC-ATAAAAATGTTTTTT
64 AAAATTTTATTTTC-AAGAAAAATTGATACTTTCAACTTTTCCTA-AAAAAT-ATATTT
** *
110896 TTTTTAATTTTATGTTCAAGGAAAATTGATACTTTCAAC-TTTCCTTCAAAAATGTATTTTTT-A
1 TTTGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTT-AAAAATGTATTTTTTGA
*
110959 AAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTAAAAAATATATTT
65 AAA-TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAATATATTT
* * * * *
111015 TTTGAAATTTTTATTTTTGAA-AAAAATTAATACTTTCAACTTTTCCTCAAAAATATATTTTTTT
1 TTTGAAA-TTTTA-TTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTA-TTTTTT
** * *
111079 GAAGTTTTTATTTTCAAGAAAAATTGATA-TATTCAACTTTTCCTCAAAAATA-CTTT
63 GAAAATTTTATTTTCAAGAAAAATTGATACT-TTCAACTTTTCCTAAAAAATATATTT
*
111135 TTAGAAATTTT
1 TTTGAAATTTT
111146 TATACTTTAA
Statistics
Matches: 218, Mismatches: 22, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
119 13 0.06
120 84 0.39
121 108 0.50
122 13 0.06
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (119 bp):
TTTGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATGTATTTTTTGAA
AATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAATATATTT
Found at i:111130 original size:61 final size:61
Alignment explanation
Indices: 110774--111148 Score: 428
Period size: 60 Copynumber: 6.2 Consensus size: 61
110764 TTTAAAGCAC
* * * * * *
110774 TTTGACATTTCTATTTTCAAGGAAAATTGATAGTTTCAACTTTTCCTTAAAAATGT-TTTT
1 TTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT
* * * *
110834 CTTGAAAATTTTATTTTCTAAGAAAAATTGATACTTTCAACTTTTCCAT-AAAAATGTTTTTT
1 TTTGAAATTTTTATTTTC-AAGAAAAATTGATACTTTCAACTTTTCC-TCAAAAATATATTTT
** * * *
110896 TTTTTAA-TTTTATGTTCAAGGAAAATTGATACTTTCAAC-TTTCCTTCAAAAATGTA-TTT
1 TTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCC-TCAAAAATATATTTT
* * *
110955 TTTAAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTAAAAAATATA-TTT
1 TTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT
* *
111015 TTTGAAATTTTTATTTTTGAA-AAAAATTAATACTTTCAACTTTTCCTCAAAAATATATTTT
1 TTTGAAATTTTTA-TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT
* *
111076 TTTGAAGTTTTTATTTTCAAGAAAAATTGATA-TATTCAACTTTTCCTC-AAAA-ATACTTT
1 TTTGAAATTTTTATTTTCAAGAAAAATTGATACT-TTCAACTTTTCCTCAAAAATATATTTT
*
111135 TTAGAAATTTTTAT
1 TTTGAAATTTTTAT
111149 ACTTTAAGGA
Statistics
Matches: 274, Mismatches: 31, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
59 32 0.12
60 141 0.51
61 92 0.34
62 9 0.03
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (61 bp):
TTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT
Found at i:112694 original size:85 final size:84
Alignment explanation
Indices: 112605--112864 Score: 274
Period size: 85 Copynumber: 3.1 Consensus size: 84
112595 TGAGCTGAAA
* * * * * *
112605 TCTGAAATGAACAATTTGGACTAAGCCAAAGAAGGATCTGACATAAGTCAAAATTCAAAACAAAA
1 TCTGAAATAAATAACTTGGACTAAGCCAAAGAAGGATCTGGCATAAGTCGAAATCCAAAACAAAA
112670 TGACCTGGATTGAATCAAAG
66 TGACCTGGA-TGAATCAAAG
** * * * * * **
112690 TCTGACTTAATTAGCTTAGACTAAGCCAAAGAATGATCTGGCATAAGCCGAAATCCAAAATGAAA
1 TCTGAAATAAATAACTTGGACTAAGCCAAAGAAGGATCTGGCATAAGTCGAAATCCAAAACAAAA
* *
112755 TGACCTGAATGAAACCAAAG
66 TGACCTGGATG-AATCAAAG
*
112775 TC--AAAGGTAAATAACTTGGACTGAA-CCAAAGAAGAATCTGGCATAAGTCGAAATCCAAAACA
1 TCTGAAA--TAAATAACTTGGACT-AAGCCAAAGAAGGATCTGGCATAAGTCGAAATCCAAAACA
*
112837 AAATGATCTGGATGAATCCAAAG
63 AAATGACCTGGATGAAT-CAAAG
112860 TCTGA
1 TCTGA
112865 CTTTATAACA
Statistics
Matches: 138, Mismatches: 30, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
83 1 0.01
84 4 0.03
85 130 0.94
86 2 0.01
87 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (84 bp):
TCTGAAATAAATAACTTGGACTAAGCCAAAGAAGGATCTGGCATAAGTCGAAATCCAAAACAAAA
TGACCTGGATGAATCAAAG
Found at i:113156 original size:17 final size:17
Alignment explanation
Indices: 113115--113157 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
113105 AGAATTAAAT
* *
113115 ATTCACAAGGCTTTCAG
1 ATTCGCAAGGCTTTCAA
113132 ATTCGCAAGGCTTTCAA
1 ATTCGCAAGGCTTTCAA
*
113149 ATTTGCAAG
1 ATTCGCAAG
113158 AAATAAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (17 bp):
ATTCGCAAGGCTTTCAA
Found at i:114126 original size:28 final size:27
Alignment explanation
Indices: 114086--114164 Score: 81
Period size: 29 Copynumber: 2.9 Consensus size: 27
114076 TCCTTTTTCA
* *
114086 TTTTTTT-ATTTTTCTTGTTCTTTCATT-
1 TTTTTTTCCTTTTTCTCGTT-TTTC-TTC
114113 TTTTTTTCCTTTTTTCTCGTTTTTCTTGC
1 TTTTTTTCC-TTTTTCTCGTTTTTCTT-C
*
114142 TTTTTTTCCTTTTTCTCATTTTT
1 TTTTTTTCCTTTTTCTCGTTTTT
114165 TTTTCTTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
27 9 0.20
28 17 0.38
29 19 0.42
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (27 bp):
TTTTTTTCCTTTTTCTCGTTTTTCTTC
Found at i:114126 original size:29 final size:28
Alignment explanation
Indices: 114094--114164 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
114084 CATTTTTTTA
*
114094 TTTTTCTTGTTCTTTCATT-TTTTTTTCCT
1 TTTTTCTCGTT-TTTC-TTCTTTTTTTCCT
114123 TTTTTCTCGTTTTTCTTGCTTTTTTTCC-
1 TTTTTCTCGTTTTTCTT-CTTTTTTTCCT
*
114151 TTTTTCTCATTTTT
1 TTTTTCTCGTTTTT
114165 TTTTCTTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
27 2 0.05
28 17 0.45
29 19 0.50
ACGTcount: A:0.03, C:0.18, G:0.04, T:0.75
Consensus pattern (28 bp):
TTTTTCTCGTTTTTCTTCTTTTTTTCCT
Found at i:114127 original size:9 final size:9
Alignment explanation
Indices: 114113--114166 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
114103 TTCTTTCATT
114113 TTTTTTTCC
1 TTTTTTTCC
*
114122 TTTTTTCTCG
1 TTTTTT-TCC
*
114132 TTTTTCTTGC
1 TTTTT-TTCC
114142 TTTTTTTCC
1 TTTTTTTCC
* *
114151 TTTTTCTCA
1 TTTTTTTCC
114160 TTTTTTT
1 TTTTTTT
114167 TTCTTTCATT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
9 22 0.61
10 13 0.36
11 1 0.03
ACGTcount: A:0.02, C:0.19, G:0.04, T:0.76
Consensus pattern (9 bp):
TTTTTTTCC
Found at i:114135 original size:19 final size:18
Alignment explanation
Indices: 114113--114166 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
114103 TTCTTTCATT
*
114113 TTTTTTTCCTTTTTTCTCG
1 TTTTTTTCCTTTTTT-TCC
*
114132 TTTTTCTTGCTTTTTTTCC
1 TTTTT-TTCCTTTTTTTCC
* *
114151 TTTTTCTCATTTTTTT
1 TTTTTTTCCTTTTTTT
114167 TTCTTTCATT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 8 0.28
19 12 0.41
20 9 0.31
ACGTcount: A:0.02, C:0.19, G:0.04, T:0.76
Consensus pattern (18 bp):
TTTTTTTCCTTTTTTTCC
Found at i:118216 original size:61 final size:60
Alignment explanation
Indices: 118140--118510 Score: 451
Period size: 60 Copynumber: 6.1 Consensus size: 60
118130 GCATTTTGAT
* * *
118140 ATTTCTATTTTCAAGGAAAATAGATACTTTCAACTTTTCCTTAAAAATGT-TTTTCTTGAAA
1 ATTT-TATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT-TTGAAA
* * * *
118201 ATTTTATTTTTCAAGGAAAATTGATACTTTCAATTTTTCCTTTAAAATATTTTTTTTTTGAAA
1 ATTTTA-TTTTCAAGGAAAATTGATACTTTCAACTTTTCC-TCAAAA-ATATATTTTTTGAAA
* * * *
118264 ATTTTATGTTCAAGGAAAATTGATACTTTCAACTTTCCCTCAAAAATGTATTTTTTGACA
1 ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAA
118324 ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAA
1 ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAA
* * * *
118384 TTTTTATTTTCGAA-AAAAATTGATACTCTCAACTTTTCCTCAAAAATATATTTTCTTGAAG
1 ATTTTATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTT-TTGAAA
* * * * * * *
118445 TTTTTATTTTCAAGGAAATTTGATACATTCAATTTTTCTTCAAGAATA-CTTTTTTGAAA
1 ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAA
*
118504 TTTTTAT
1 ATTTTAT
118511 ACTTTAAGGA
Statistics
Matches: 276, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
59 12 0.04
60 124 0.45
61 85 0.31
62 36 0.13
63 15 0.05
64 4 0.01
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (60 bp):
ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAA
Found at i:119954 original size:45 final size:44
Alignment explanation
Indices: 119780--120006 Score: 199
Period size: 44 Copynumber: 5.1 Consensus size: 44
119770 TCAACGACAT
* * * * **
119780 TTTTAAAAATTTAAAAA-GCTCCTCTGAA-CAAAGCCTTAATGAC
1 TTTTAAAAATTTAAAAAGGCTCATCT-AAGCAGAGGCTCAACAAC
* * *
119823 TTTTAAAAATTTGAAAAGGCTTATCTAAGCAGAGGATCAACAAC
1 TTTTAAAAATTTAAAAAGGCTCATCTAAGCAGAGGCTCAACAAC
* * **
119867 TTTTGAAAATTTAGAAAGTTTCATCTAAGCAGAGGCTCAACAAC
1 TTTTAAAAATTTAAAAAGGCTCATCTAAGCAGAGGCTCAACAAC
* *
119911 TTTTGAAAATTTAAAAAAGGCTCCTCTAAGCAGAGGCTCAACAAC
1 TTTTAAAAATTT-AAAAAGGCTCATCTAAGCAGAGGCTCAACAAC
* * * *
119956 TTTAAAAATCCATCTTGAAAAA-TCTCCTCTAAGTAGAGGCTCAACAAC
1 TTTTAAAA---AT-TT-AAAAAGGCTCATCTAAGCAGAGGCTCAACAAC
120004 TTT
1 TTT
120007 AACAATCCAT
Statistics
Matches: 152, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
43 18 0.12
44 64 0.42
45 34 0.22
48 29 0.19
49 7 0.05
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (44 bp):
TTTTAAAAATTTAAAAAGGCTCATCTAAGCAGAGGCTCAACAAC
Found at i:120002 original size:48 final size:48
Alignment explanation
Indices: 119890--120307 Score: 429
Period size: 48 Copynumber: 8.8 Consensus size: 48
119880 GAAAGTTTCA
** *
119890 TCTAAGCAGAGGCTCAACAACTTTTGAAA---AT-TTAAAAAAGGCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAA-GCTCC
*
119935 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAATCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCC
* * *
119983 TCTAAGTAGAGGCTCAACAACTTTAACAATCCATCTTGAAAAAGTTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCC
* ** *
120031 TCTAAGCAAAGGCTCAATGACTTTAAAAATCTTATCTT-AGAAAAGCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATC-CATCTTGA-AAAAGCTCC
* * * * *
120080 TCCAAGTAGAGGTTCAACAGCTTT-AAAATTCATCTTGAAAAAGCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCC
* ** * *
120127 TTTTTGCAAAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCC
* *
120175 TCTAAGCAGAGGTTCAACAACTTT-AAAATTCATCTTGAAAAAGCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCC
* * * *
120222 TTTAAGTAGAGGCGCAACAACTTTAAAAATCTTATCTT-AGAAAAGCTCC
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATC-CATCTTGA-AAAAGCTCC
* ** * * *
120271 TTTAAAAAGAAGTTTAACAACTTTAAAAATCTCATCT
1 TCTAAGCAGAGGCTCAACAACTTTAAAAATC-CATCT
120308 GTTCTTAAAA
Statistics
Matches: 312, Mismatches: 50, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
45 27 0.09
47 73 0.23
48 131 0.42
49 81 0.26
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (48 bp):
TCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCC
Found at i:133204 original size:9 final size:8
Alignment explanation
Indices: 133188--133230 Score: 59
Period size: 9 Copynumber: 5.1 Consensus size: 8
133178 AAAAAAGAAG
133188 AAAAAAAT
1 AAAAAAAT
133196 AAAATAAAT
1 AAAA-AAAT
133205 AAAATAAAT
1 AAAA-AAAT
*
133214 AAAAAAAG
1 AAAAAAAT
133222 AAAAAAAT
1 AAAAAAAT
133230 A
1 A
133231 TAATAGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
8 15 0.47
9 17 0.53
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (8 bp):
AAAAAAAT
Found at i:133233 original size:18 final size:17
Alignment explanation
Indices: 133175--133230 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
133165 AACCGATCAG
133175 AATAAAAAAGAAGAAAAA
1 AATAAAAAA-AAGAAAAA
* *
133193 AATAAAATAAATAAAATA
1 AATAAAAAAAAGAAAA-A
133211 AAT-AAAAAAAGAAAAA
1 AATAAAAAAAAGAAAAA
133227 AATA
1 AATA
133231 TAATAGTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 4 0.12
17 16 0.50
18 12 0.38
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (17 bp):
AATAAAAAAAAGAAAAA
Found at i:133251 original size:36 final size:33
Alignment explanation
Indices: 133175--133251 Score: 93
Period size: 34 Copynumber: 2.2 Consensus size: 33
133165 AACCGATCAG
*
133175 AATAA-AAAAGAAGAAAAAAATAAAATAAATAA
1 AATAATAAAAAAAGAAAAAAATAAAATAAATAA
*
133207 AATAAATAAAAAAAGAAAAAAATATAATAGTAATAA
1 AAT-AATAAAAAAAGAAAAAAATAAAATA--AATAA
133243 TAATAATAA
1 -AATAATAA
133252 TACAAAATGG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
32 3 0.08
33 2 0.05
34 20 0.53
36 10 0.26
37 3 0.08
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (33 bp):
AATAATAAAAAAAGAAAAAAATAAAATAAATAA
Found at i:136867 original size:12 final size:12
Alignment explanation
Indices: 136852--136890 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
136842 TATCAAAAAA
*
136852 ATTTTATTATAT
1 ATTTTATTATTT
*
136864 ATTTCATTATTT
1 ATTTTATTATTT
136876 ATTTT-TTATTT
1 ATTTTATTATTT
136887 ATTT
1 ATTT
136891 CAACAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTTATTATTT
Found at i:137929 original size:7 final size:7
Alignment explanation
Indices: 137875--137931 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
137865 CAAACTGATC
*
137875 AAAACAG
1 AAAAAAG
137882 AAAATAA-
1 AAAA-AAG
137889 AAAAAAGG
1 AAAAAA-G
*
137897 GAAAAAG
1 AAAAAAG
137904 AAAGAAAG
1 AAA-AAAG
*
137912 AAAGAAG
1 AAAAAAG
137919 AAAAAAG
1 AAAAAAG
137926 AAAAAA
1 AAAAAA
137932 TATAATAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
6 2 0.05
7 26 0.63
8 13 0.32
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:138749 original size:116 final size:115
Alignment explanation
Indices: 138540--138796 Score: 315
Period size: 116 Copynumber: 2.2 Consensus size: 115
138530 GCTTTTATAA
* ** *
138540 AAGGAAAATTGATACTTTCAATTTTTTTTTAAAAAAAATATATTTTTAATTTTATGTTCAAGAAA
1 AAGGAAAATTGATACTTTCAA-CTTTCCTTAAAAAAAATATATTTTTAATTTTATGTTAAAGAAA
* *
138605 AATTGATACTTTCAATTTTCCTTTAAAATGCT-TTTTGAAAATTGT-TTTTC
65 AATTGATACTTTCAATTTTCCTTCAAAAT-ATATTTTGAAAATTGTATTTTC
* * * *
138655 AAGGAAAATTGATACTTTTAACTTTCCTTCAAAAATATAT-TTTTTGAAATTTTTATTTTAAAGA
1 AAGGAAAATTGATACTTTCAACTTTCCTTAAAAAAAATATATTTTT--AA-TTTTATGTTAAAGA
* *
138719 AAAATTGATACTTTCAACTTTTCC-TCAAAATATATTTTGAAATTTTTATTTTC
63 AAAATTGATACTTTCAA-TTTTCCTTCAAAATATATTTTGAAAATTGTATTTTC
*
138772 AAGAAAAATTGATACTTTCAACTTT
1 AAGGAAAATTGATACTTTCAACTTT
138797 TTCCTCAAAA
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
113 5 0.04
114 14 0.11
115 23 0.19
116 46 0.38
117 34 0.28
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.46
Consensus pattern (115 bp):
AAGGAAAATTGATACTTTCAACTTTCCTTAAAAAAAATATATTTTTAATTTTATGTTAAAGAAAA
ATTGATACTTTCAATTTTCCTTCAAAATATATTTTGAAAATTGTATTTTC
Found at i:138779 original size:57 final size:58
Alignment explanation
Indices: 138574--138826 Score: 290
Period size: 57 Copynumber: 4.4 Consensus size: 58
138564 TTTTTTAAAA
* * *
138574 AAAATATATTTT-TAA-TTTTATGTTCAAGAAAAATTGATACTTTCAA-TTTTCCTTT
1 AAAATATATTTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTC
* * * * *
138629 AAAATGCT-TTTTGAAAATTGT-TTTTCAAGGAAAATTGATACTTTTAAC-TTTCCTTC
1 AAAAT-ATATTTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTC
*
138685 AAAAATATATTTTTTGAAATTTTTATTTTAAAGAAAAATTGATACTTTCAACTTTTCC-TC
1 -AAAATATA--TTTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTC
138745 AAAATATATTTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCC-TC
1 AAAATATATTTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAAC-TTTTCCTTC
*
138803 AAAATACTTGTTTTG-AATTTTTAT
1 AAAATA--TATTTTGAAATTTTTAT
138827 GCCTCTGAGA
Statistics
Matches: 170, Mismatches: 15, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
55 9 0.05
56 34 0.20
57 48 0.28
58 14 0.08
59 28 0.16
60 32 0.19
61 5 0.03
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (58 bp):
AAAATATATTTTGAAATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTC
Found at i:138822 original size:116 final size:115
Alignment explanation
Indices: 138544--138827 Score: 310
Period size: 116 Copynumber: 2.5 Consensus size: 115
138534 TTATAAAAGG
* ** * * * *
138544 AAAATTGATACTTTCAATTTTTTTTTAAAAAAAATATATTTTTAA-TTTTATGTTCAAGAAAAAT
1 AAAATTGATACTTTCAACTTTTTCCT-CAAAATATATATTTTGAATTTTTATGTTAAAGAAAAAT
* * *
138608 TGATACTTTCAATTTTCCTTTAAAATGCTTTTTGAAAATTGTTTTTCAAGG
65 TGATACTTTCAATTTTCCTTCAAAATGATTTTTGAAAATTGTTTTTCAAGA
* * *
138659 AAAATTGATACTTTTAAC--TTTCCTTCAAAAATATATTTTTTGAAATTTTTATTTTAAAGAAAA
1 AAAATTGATACTTTCAACTTTTTCC-TC-AAAATATATATTTTG-AATTTTTATGTTAAAGAAAA
* *
138722 ATTGATACTTTCAACTTTTCC-TCAAAAT-ATATTTTGAAATTTTTATTTTCAAGA
63 ATTGATACTTTCAA-TTTTCCTTCAAAATGAT-TTTTGAAAATTGT-TTTTCAAGA
*
138776 AAAATTGATACTTTCAACTTTTTCCTCAAAATACT-TGTTTTGAATTTTTATG
1 AAAATTGATACTTTCAACTTTTTCCTCAAAATA-TATATTTTGAATTTTTATG
138828 CCTCTGAGAA
Statistics
Matches: 141, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
113 3 0.02
114 13 0.09
115 19 0.13
116 55 0.39
117 43 0.30
118 3 0.02
119 5 0.04
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.48
Consensus pattern (115 bp):
AAAATTGATACTTTCAACTTTTTCCTCAAAATATATATTTTGAATTTTTATGTTAAAGAAAAATT
GATACTTTCAATTTTCCTTCAAAATGATTTTTGAAAATTGTTTTTCAAGA
Done.