Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168416.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_630, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21051
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:1402 original size:52 final size:50

Alignment explanation


    Indices: 1345--1466  Score: 129
    Period size: 52  Copynumber: 2.4  Consensus size: 50

       1335 GATTTTTTAG

                                **                               
       1345 ATTTAATTCCAGAATCAATTGGCATTAAAAATGAT-GTGGAGAGATTGTCGAA
          1 ATTTAATTCCAGAATCAATTCACATT-AAAATGATAG-GGAGAGATT-TCGAA

                     * *                 *                * * 
       1397 ATTTAATTCTATAATCAATTCACATTAAATTGATAGGGAGAGATTTTGGA
          1 ATTTAATTCCAGAATCAATTCACATTAAAATGATAGGGAGAGATTTCGAA

                *   *           
       1447 ATTTGATTTCAGAATCAATT
          1 ATTTAATTCCAGAATCAATT

       1467 TTCAATTAAA


Statistics
Matches: 58,  Mismatches: 11, Indels: 4
        0.79            0.15        0.05

Matches are distributed among these distances:
  50   19  0.33
  51   16  0.28
  52   23  0.40

ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36


Consensus pattern (50 bp):   
ATTTAATTCCAGAATCAATTCACATTAAAATGATAGGGAGAGATTTCGAA

Found at i:2000 original size:23 final size:24

Alignment explanation


    Indices: 1974--2039  Score: 82
    Period size: 25  Copynumber: 2.7  Consensus size: 24

       1964 TGTTTTGACT

                                   *
       1974 TTATTTTTCTTATTTTATTTA-TG
          1 TTATTTTTCTTATTTTATTTACTC

                                      
       1997 TTATTTTGT-TTATTTTTATTTACTC
          1 TTATTTT-TCTTA-TTTTATTTACTC

                              
       2022 TTATTATTTCTTATTTTA
          1 TTATT-TTTCTTATTTTA

       2040 AATTGAAAAA


Statistics
Matches: 37,  Mismatches: 1, Indels: 8
        0.80            0.02        0.17

Matches are distributed among these distances:
  23   10  0.27
  24   10  0.27
  25   12  0.32
  26    5  0.14

ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73


Consensus pattern (24 bp):   
TTATTTTTCTTATTTTATTTACTC

Found at i:6586 original size:30 final size:30

Alignment explanation


    Indices: 6550--6608  Score: 118
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       6540 GTTTAGATAT

                                          
       6550 AAACCAAATATGATATAAAATGATTATTAC
          1 AAACCAAATATGATATAAAATGATTATTAC

                                         
       6580 AAACCAAATATGATATAAAATGATTATTA
          1 AAACCAAATATGATATAAAATGATTATTA

       6609 TCCTATCCTC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.54, C:0.08, G:0.07, T:0.31


Consensus pattern (30 bp):   
AAACCAAATATGATATAAAATGATTATTAC

Found at i:17625 original size:52 final size:51

Alignment explanation


    Indices: 17568--17699  Score: 133
    Period size: 50  Copynumber: 2.6  Consensus size: 51

      17558 GATTTTTTAG

                                **                               
      17568 ATTTAATTCCAGAATCAATTGGCATTAAAAATGAT-GTGGAGAGATTGTCGAA
          1 ATTTAATTCCAGAATCAATTCACATTAAAAATGATAG-GGAGAGATT-TCGAA

                     * *                  *                * * 
      17620 ATTTAATTCTATAATCAATTCACATT-AAATTGATAGGGAGAGATTTTGGA
          1 ATTTAATTCCAGAATCAATTCACATTAAAAATGATAGGGAGAGATTTCGAA

                *   *           **        
      17670 ATTTGATTTCAGAATCAATTTTCATTAAAA
          1 ATTTAATTCCAGAATCAATTCACATTAAAA

      17700 CGAAAATAAA


Statistics
Matches: 65,  Mismatches: 13, Indels: 5
        0.78            0.16        0.06

Matches are distributed among these distances:
  50   23  0.35
  51   19  0.29
  52   23  0.35

ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36


Consensus pattern (51 bp):   
ATTTAATTCCAGAATCAATTCACATTAAAAATGATAGGGAGAGATTTCGAA

Found at i:18221 original size:23 final size:24

Alignment explanation


    Indices: 18195--18260  Score: 82
    Period size: 25  Copynumber: 2.7  Consensus size: 24

      18185 TGTTTTGACT

                                   *
      18195 TTATTTTTCTTATTTTATTTA-TG
          1 TTATTTTTCTTATTTTATTTACTC

                                      
      18218 TTATTTTGT-TTATTTTTATTTACTC
          1 TTATTTT-TCTTA-TTTTATTTACTC

                              
      18243 TTATTATTTCTTATTTTA
          1 TTATT-TTTCTTATTTTA

      18261 AATTGAAAAA


Statistics
Matches: 37,  Mismatches: 1, Indels: 8
        0.80            0.02        0.17

Matches are distributed among these distances:
  23   10  0.27
  24   10  0.27
  25   12  0.32
  26    5  0.14

ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73


Consensus pattern (24 bp):   
TTATTTTTCTTATTTTATTTACTC
Done.