Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168424.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20934
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Found at i:839 original size:26 final size:26
Alignment explanation
Indices: 810--862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
800 CCGGTTTGAT
*
810 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
836 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
862 C
1 C
863 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1753 original size:900 final size:898
Alignment explanation
Indices: 6--9712 Score: 11280
Period size: 900 Copynumber: 10.9 Consensus size: 898
1 CGACT
* * * *
6 AGAGGGGCAAGATGCGCAAGCCGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCTGATCCTGCTA
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
* * * * *
71 TCAG-AACCCTCGGTTCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
66 -CCGCAACCCTCGG-TCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
** * * * * **
135 TTAAACGAGCAGACGGGCAGACGGGCACTAAACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
129 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * * *
200 TCGATAGAGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGGCATTTTTAG
194 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * * * *
265 GGCTTTTAAATTCAAACAATGTTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCGT
259 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
330 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTTTGGGATTTTTTTTAAATTTTTTCAGGAG
324 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
** * * * *
395 GAGTTTTGGCCTGAAACATGCTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTC
389 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
460 AGCTAAAAACTCAAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
454 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
525 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAACGGGGTGTGAGTTCTCA
519 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
590 ATGTTGGATGAGGGATATGGGGCTAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTG
584 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * ** *** * *
655 CGCACACCCCACAGCCCCCCCAATCGCCGAAACCAAAATGCTATCGGTTAGGTTCTTC-AGCGAT
649 CGCACACCCC-CCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGAT
* * * * *
719 GCTCCGGCGATGGTGGCTCGGGTGAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
712 GCTCCGACGATGGT-GCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ** * *
784 CACCCGTAA-CCTTAGTCCGGTTTGATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGA
776 CACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
848 ATGAACTCCGTATGCCTAAGTCAACGCAAGAAACGAGCGTGCGGGCGCTCAGCCGACC
841 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * * *
906 AGAGGGGCAGGATGCGCAAGTAGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTACTA
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
* * *
971 CTGCAACCCTTGGTCCGTACCGATCTTAGACT-GGAATTGAACTCCGTATGCCTAAGCCAACTGA
66 CCGCAACCCTCGGTCCGT-CCGATCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGCCAACCGA
* * * * * *
1035 CGAAATGAGCGGGGGGGTGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGA
129 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
1100 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA-TTTTAT
194 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA-
*
1164 TGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTCG
258 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * ** * * *
1229 TTTTCTATTTTTCAAGATTTTTAAAACTTTTTATTGTTTGGGATTTTTTTCAAATTTTTTTAGAA
323 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * * * * *
1294 GGAGTTTTGGCCCCAAACTTGGTAGACATGCTCCTTGTATTTTTTTTCGAAAGCACAAAAAAATT
388 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
1359 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACA
453 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
1424 CTTTAATGGCTACTGGCAACAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTT
518 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
1489 GAGGTTTGCTGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGT
583 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
1554 GCGCACACCCCCCTGGCCCCCTCAATCGTCGAAACCCGAATACCGCCGGTCAGGTTCTCCGATGA
648 GCGCACACCCCCC-GGCCCCC-CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
** * ** *
1619 TGCTCCGGGGATGGTGCCCGGGGGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTG
711 TGCTCCGACGATGGTGCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * * * *
1684 CACCTGTAACCCTTGGTCTGGTTTGTTCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GAA
776 CACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * * *
1748 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTCCGGGCGCTCAGCCGACC
841 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** * * ** * * * * *
1806 -G-GGGGGAGGATGCGCAAGCCAGGGATCAATCGAGTCCCCCTTTGTGTGCTGCCAAACTTACTG
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
* ** ** ** * * * * * * *
1869 TCGCAACCCTTTGTTTGATTTGATCTTCGACTGGGAATAAACTTCGTATGCGTCAGCCAATCAAC
66 CCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
1934 GAAATGAGCGGGCGGG-GGGC---CACTACGCCGGCCAGAGAGGC-GGATGCGCATGCCTTGGAT
130 GAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
1994 CGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTGATATTTATGCCATGCCAATGCCATTTTTATG
195 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
2059 GCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGC-A-A-GA-T-G--
260 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
2117 -----------AC-----TTG-----TTTT-C---T----A-TTTTTTAAAATTTTTCCAGAAGG
325 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
**
2152 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCA
390 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
2217 ACTAAAAACTCAAAATGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACT
455 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2282 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTAAGTTCTCGA
520 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
2347 GGTTTGATGAGGGATAGAGGGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGC
585 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * ** *
2412 ACACACCCCCCGGCCCCCCAATCACTGGAACCCCAATGCCGCCGATCAGGTTCTTAGGCGATGCT
650 GCACACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* *
2477 CCGACGATAGTGCCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
715 CCGACGATGGTG-CCCGGGCG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
2542 CCCGCAA-CC-C--T-C-G---G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAAT
778 CCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
2581 AAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAACCGGCC
843 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* ** * *
2637 AGAGGGGCAGGATGCACAAGCCAAGGATCGATCGGGTCCCCCTC-AGCGTGCTGCCGATCTTGCT
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA-CGTGCTGCCGATCCTGCT
** * * * * * * **
2701 ATTGTAACCTTTGGTCCGGTCCGATCCTAGACTAGGAATAAACTTTGTATGCCTAAGCCAACCGA
65 ACCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
2766 C-AAA--A-----CGAGCGAGCGGGCACTACGCCGGCTAGAGAGGCGGGATGCGCAACCCGTTGA
129 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * * * *
2823 TTGGTAGTGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTAT
194 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * *
2888 GGCTTGTAAATTCATGCAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGT
259 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * *
2953 TTTCTATTTTTCACGATTTTTGAAACTTCTTATGGTTTAGGATTTTTTT-TAATTTTTTCAGAAA
324 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
*
3017 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAC-AAAAAATTC
389 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
3081 AGCGAAAAACTCAAAGTGTACAGGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACAC
454 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
3146 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAATTGCTTTTTAAGGGGGTGAGAGTTCACG
519 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
3211 AGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCGAAGAACCAGCAACCATCGCACATTATGTG
584 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * * *
3276 CACACACCCCCCTGTCCCCCCAATCGTCGGAACCCAAATGTCACCGATCAGGATCTCCGACGA--
649 CGCACACCCCCC-GGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * ** * *
3339 -T--G--G-T-G-GCCCGGGCAAAAAAAAATGCGATACCAGCACATGCCAAGAGCCTAGCATGTG
713 CTCCGACGATGGTGCCCGGGC-GAAAAAAATGTGGCACCAGCACATGCC-CGAGCCCAGCATGTG
* * * * *
3396 CACCCGAAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGA
776 CACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
3461 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGTTCAGCCGGCC
841 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
3519 AGAGGGGTAGGATGCACAAGTCGGGGATCGATCGGGTCCCCCTC-A-GTGTACTGCCGATCCTGC
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG--CTGCCGATCCTGC
* * ** * * *
3582 TGCCACAACCCTCAATCCGGTCCAAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA
64 TACCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * ** *
3647 ACAAAATGAGCGGAG-GGGTGGGCAGGCACTATACCGGCCAGAGAGGCGGGATGCGCAAGTCGTG
128 ACGAAACGAGCGG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * *
3711 GATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTTTT
192 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * *
3776 ATGGCTTGTAAATTCATACAACGGTCCCTTAAGACTTCATGTCAAGTTTCATGGCAAGACGACTC
257 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * *
3841 GTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACTGTTCGGAATTTTTTTAAAATTTTTTCAGA
322 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
* * * *
3906 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGAAAGCACAAAAAAAT
387 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
3971 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
452 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
4036 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCT
517 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
4101 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCACCGCACATCATG
582 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* **
4166 TGCGCACATCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTG
647 TGCGCACA-CCCCCCGG-CCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * *
4231 ATGCTCCGACGATGGTGCCCGGGCAAAAAAAAATTTGGCACCAGCACATGCCCAAGCCCAACATG
710 ATGCTCCGACGATGGTGCCCGGGC-GAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
** * *
4296 TGCACCCATAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-G
774 TGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
4360 AAATGAACTCCGTATGCCTAAGTCAAGCCATGAAACGAGTGTGCGGGCGC-CTAGTCGGCC
839 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC-AGCCGGCC
** ** * **
4420 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCAAGTCAGCCTCTACGTGCTGCCAAT-CTTATG
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-
* * ** * **
4484 GCTGCAACCCTCTATTCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGA
65 ACCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-
* * * * * * *
4548 ACGTAATGA----GCGGGCGGGCGGGCAATACGCTGGCCAGAGAGGCGGGATGCACATGCCGTTG
128 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * * **
4609 ATTGGTAGTGTGGTAGGTGGGTTTAGGCACATCTTTTTATTTCTGCCATGCCAATGCCATTTTTA
193 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * * *
4674 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCGTGGCAAGACCACTCA
258 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* *
4739 TTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAA
323 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
*** * * * **
4804 ATTGTTTT-ACCCTAAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAAT
388 GGAGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
4868 TCAGCTAAAAACTCGAAGTGTTCAGGATTTTGTGACCATTAG-AAAAAGTG-CGCCCATTTCAGA
452 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC-CCCATTTCAGA
*
4931 CACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
516 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
4996 AT-GAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCAGCCATCGCACATTA
581 -TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
5060 CGTGCACACACCCCTCCCGTCCCCCCAATCGTCGGAACCCCATTGCCACCGGTCAGGTTCTCCGA
645 TGTGCGCACA-CCC-CCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* *
5125 CGA---T--G--G-T-G-GCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAACAT
708 CGATGCTCCGACGATGGTGCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
** * * **** * * * *
5180 GTGCACTTGAAACCCTCAGTTTAATCCGATCTTAGACTGGGAATGAGCTTCGTATGCTTAGATTG
773 GTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
5245 GGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTACGGGCGCTCAGCCGGCC
838 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *** * * *
5306 AGAGGGGCAAGATGCGCAAGTCGGGGATCAACCGGGTGCCCCTC-AGCATGCTACCGATCCTGCT
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA-CGTGCTGCCGATCCTGCT
* * * ** * * * *
5370 GCCACAACCCGCAATCCGGTCTGAACTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGA
65 ACCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
5435 CGAAACGAGCTGGCGGGCGGGCGGCCACTACGCCGGCCAGAGAGGCGGGGTGCGCAAGCCGTGGA
129 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * *
5500 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTACCATGCGAATGCCATTTTTAT
194 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
5565 GGCTCGTAAATTCATACAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGGCAAGACGACTCGT
259 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * ** **
5630 TTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAG
324 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
* * *
5695 GAGTTTTGTCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
389 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
5760 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
454 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * * *
5825 TTTAATGGCTACTGGCAGTAAACCTGAAAAATCTGAAATGCTCTTGAAGGGGGTGTGGGTTCTCT
519 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
5890 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAGCATGTG
584 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
5955 CGCACACCCCCC--ACCCCCAATCACCGGAACCTCAATGCCGTCGGTCAGGTTCT----C--TG-
649 CGCACACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * *
6011 ---G-GGATGGTGGCCCGAGCGAAAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTGCA
714 TCCGACGATGGT-GCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
*
6072 ACCGCAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAAT
778 CCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
6111 GAACTCCTTGTGCCTAAGTCAACCCATGAAATGAGCATACAGGCGCTCAGCCGGCC
843 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
6167 A-ATGGGGCAGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATCCTACT
1 AGA-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* * * * * * *
6231 GCCGCAACCCTCAGTCTGGTCCAATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCAA
65 ACCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * **
6296 TGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCTATGGA
129 CGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
6361 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTT-TGCCATGCTAATGCCATTTTTA
194 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTA
* *
6425 TGGCTCGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
258 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
** * * * *
6490 TTTTCTATTTTTCACGATTTTCAAAACATTTTACGGTTTGTGATTTTTTTAAAATTTTTTTAGAA
323 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * *
6555 GGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCACGCACAAAAAAAT
388 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAAT
6620 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
452 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
6685 ACTTTAATGGCGACTGGGCAGCAAACTTGTAAAAATCTC-AATGCTGTTTAGGGGGGTGTGGGTT
517 ACTTTAATGGCTACT-GGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-T
* *
6749 TCTCGACGGTTTGAATGAGGGATAGGGGGGCTAATATAAGGGCCAAGTACCCAGCAACCCATTGC
579 TCTCGA-GGTTTG-ATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTA-CCAGC-ACCCATCG-
* * * * *
6814 CAACATCATTTGCGGACACCCTCCC-GCCCCCCAATCACCGGAACCCCAATGCTGCCGGTCAAGT
638 C-ACATCATGTGCGCACACCC-CCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* *
6878 TCT----CTA-G----G--GATGGTGCCCCGGGTGAAAACAAATGTGTGCACCCAAGCACATGCC
701 TCTCCGACGATGCTCCGACGATGGTG-CCCGGGCGAAAA-AAATGTG-GCA-CC-AGCACATG-C
* * **
6932 CCGAG-CCAGCATGTGCAACCTGTTAACCCCTCGGTCCTAATCTGATCTTTAGACTGGGAA-GAA
760 CCGAGCCCAGCATGTGC-ACCCG-CAA-CCCTCGGTCC-GGTCTGATC-TTAGACTGGGAATGAA
* * * * *
6995 CTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACATGAAATGAGCGTGTGG
820 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
7060 GCGCTCAGCCGGCC
885 GCGCTCAGCCGGCC
* * * ** * *
7074 AAAGGGGCAGTATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCGGCGTGCTGCCAATCCTACTA
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
* * *
7139 CCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
66 CCGCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
7204 GAAACGA----GCGGACGGACGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGAT
130 GAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
7265 CGATAGGGTGCTAGGTGGGTTTAGGCACATATTCATATTT-TCGCCATGTCAATGCCATTTTTAT
195 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGCCATTTTTAT
* **
7329 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTAAT
259 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* *
7394 TTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
324 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
* * *
7459 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTC
389 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
7524 AGCTAAAAAGTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
454 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * *
7589 TTTAATGGCTACGGGCAGGAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
519 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
7654 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
584 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
7719 CGAACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGGCAATG
649 CGCACACCCCCCGG-CCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * ** *
7784 CTCCGACGATGGAGCCCTGAGTGAAAAAAAATGTGGCACCAGTGCATGCCTGAGCCCAGCATGTG
713 CTCCGACGATGGTGCCC-GGGCG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
7849 CACCCGCAACCCTCGCTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATGGTTAGACTGGGA
776 CACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
7914 ATGAATTCCGTATGCCTAAGTCAACCCATGAAACAAGCGCGCGGGTGCTCAGCCGGCT
841 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * * * *
7972 AGAGGGGCAGGATGCAAAAGCTGGGGATCGGGCGGGTGCCCTTCTACGTGCTGCCGATCATGCTA
1 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
* * **
8037 CCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAGTGAACTCTATATGCCTAAGCCAACCGAC
66 CCGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
8102 GAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGATAGGCGGGATGCGTAAGCCGTGGAT
130 GAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * * *
8167 CGATAGGGTGGTAGGTGGGGTTAGGCATATCTTCATATTTTTTCCATGCCAATGCCATTTTTATG
195 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * * *
8232 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGGAAGCCGACTCATT
260 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
8297 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTGGGGATTTTTTTAAAATTTTTTCAAAAGT
325 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
*
8362 AGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
390 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
8427 GCT-AAAACATCGAAGTGTACAGGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
455 GCTAAAAAC-TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
8491 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCCTCCTTTAAGGGGGTG-GAGTTCT
519 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CT-CTTTAAGGGGGTGTGAGTTCT
*
8555 TGA-GTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAAGTACCCAGCACCCATCGCACTATC
582 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTA-CCAGCACCCATCGCAC-ATC
** * * * *
8618 AATGGTGCGCACAGCCCCCCAACTCCCCAATCGTCGGAA-CCAAATGCCGCCGGTCAAGTT-TCC
644 -AT-GTGCGCACA-CCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
8681 -AGCAATACTCCGACGATGGTGCCCCAGGTGAAAAAAAATGTGACACCAGCACATGCCTGAGCCC
706 GA-CGATGCTCCGACGATGGTG-CCCGGGCG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * *
8745 AGCATCTGCACCCGCAACCCTTGGTCGCGGTCTGATCTTAGACT-GGAATGAACTCCATATGCCT
768 AGCATGTGCACCCGCAACCCTCGGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CT
* * *
8809 TAGACCTGGAATATAAACTCCGTATGCCTAAGTCAACCCACGGAAAACGAGCGTGCGGG-GCCTC
831 TAGA-CTGGGA-ATGAACTCCGTATGCCTAAGTCAACCCA-TG-AAACGAGCGTGCGGGCG-CTC
8873 AGCC-GCC
891 AGCCGGCC
* * * * * *
8880 AGA-GGGCAGGATGCACAAACCGGGGGATCGGCCAGGTCCCCCTC-AGCATGCTGCCGAGCCTGC
1 AGAGGGGCAGGATGCGCAAGCC-GGGGATCGGTCGGGTCCCCCTCTA-CGTGCTGCCGATCCTGC
* * * * * * *
8943 TATCGCAATCCTCGGT-CGATCCAATGTTAGACTTGGAATGAACTCTGTATACCTAAGCCAACCG
64 TACCGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** * * * * * *
9007 ATGAAACGAGCAAGCTGGCTGGCAGGAACTACGCCGGCCAGAGAGGTGGGAT-CTACAAGCCGTG
128 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-GCAAGCCGTG
* * **
9071 GATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTT
192 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
*
9136 ATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
257 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
9201 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTCTCAGA
322 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
* * ** * *
9266 AGGAGTCTTGGCCCCAAACATATTAGACGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAAT
387 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
9331 TTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
452 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
9396 ACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTAAAATGCTTTTTAAGGGGGTGTGAGTTCT
517 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
9461 CGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
582 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * ** * *
9525 TGTGCACATCCCCTGGGCCCCCCCAAATCGCCGAAACCCCAATGCCGTTGGTCATGTTCTCTGAC
647 TGCGCACA-CCCCCCGG-CCCCCC-AATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * ** * * *
9590 GATGCTCCGACGATGGTGCCCCGGGCGAAAACAAATTTGTCAGTAGCACATTCTCGAGCCAAGCA
709 GATGCTCCGACGATGGTG-CCCGGGCGAAAA-AAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * *
9655 TGTGCACCCGCAACTCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGC
772 TGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
9713 CTAAGTCAAC
Statistics
Matches: 7567, Mismatches: 980, Indels: 515
0.84 0.11 0.06
Matches are distributed among these distances:
825 3 0.00
826 3 0.00
829 20 0.00
830 129 0.02
831 55 0.01
832 8 0.00
833 99 0.01
834 4 0.00
835 1 0.00
840 1 0.00
843 1 0.00
847 1 0.00
848 2 0.00
850 1 0.00
852 1 0.00
853 3 0.00
854 45 0.01
855 44 0.01
856 335 0.04
857 4 0.00
858 4 0.00
859 1 0.00
860 2 0.00
861 438 0.06
862 107 0.01
863 35 0.00
864 13 0.00
865 208 0.03
866 114 0.02
867 29 0.00
868 5 0.00
869 9 0.00
870 3 0.00
871 16 0.00
872 6 0.00
873 53 0.01
874 9 0.00
875 4 0.00
876 2 0.00
877 20 0.00
878 12 0.00
879 2 0.00
880 7 0.00
881 4 0.00
882 169 0.02
883 6 0.00
884 2 0.00
885 91 0.01
886 164 0.02
887 93 0.01
888 2 0.00
889 5 0.00
890 516 0.07
891 211 0.03
892 197 0.03
893 184 0.02
894 62 0.01
895 8 0.00
896 203 0.03
897 348 0.05
898 313 0.04
899 38 0.01
900 702 0.09
901 305 0.04
902 596 0.08
903 331 0.04
904 127 0.02
905 130 0.02
906 138 0.02
907 681 0.09
908 62 0.01
909 20 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA
CCGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
Found at i:1755 original size:25 final size:26
Alignment explanation
Indices: 1711--1762 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1701 CTGGTTTGTT
* *
1711 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
1737 CTTAGACT-GAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
1762 C
1 C
1763 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:3452 original size:26 final size:26
Alignment explanation
Indices: 3423--3475 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3413 CCAGTCCGAT
*
3423 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3475 C
1 C
3476 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4369 original size:25 final size:26
Alignment explanation
Indices: 4325--4376 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4315 CTGGTCTGAT
*
4325 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4351 CTTAGACT-GAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4376 C
1 C
4377 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:5246 original size:26 final size:26
Alignment explanation
Indices: 5210--5262 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5200 TTAATCCGAT
* *
5210 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5236 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5262 C
1 C
5263 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:8204 original size:902 final size:901
Alignment explanation
Indices: 6097--9712 Score: 4689
Period size: 907 Copynumber: 4.0 Consensus size: 901
6087 CCGATCCGAT
* * * * * *
6097 CTTAGACTGGGAATGAACTCCTTGTGCCTAAGTCAACCCATGAAATGAGCATACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
6162 CGGCCA-ATGGGGCAGGATGCGAAAGCCGGGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATC
66 CGGCCAGA-GGGGCAGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCCTC-ACGTGCTGCCAATC
* * *
6226 CTACTGCCGCAACCCTCAGTCTGGTCCAATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCA
129 CTACTACCGCAACCCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * * * * *
6291 ACCAATGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCT
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
6356 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTTTGCCATGCTAATGCCATT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATT
* *
6421 TTTATGGCTCGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * * *
6486 CTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTACGGTTTGTGATTTTTTTAAAATTTTTTT
389 CTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* *
6551 AGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCACGCACAAAA
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAA
6616 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
6681 AGACACTTTAATGGCGACTGGGCAGCAAACTTGTAAAAATC-TCAATGCTGTTTAGGGGGGTGTG
583 AGACACTTTAATGGCTAC-GGGCAGCAAACCTGT-AAAATCTTAAATGCTCTTTAAGGGGGTGTG
* *
6745 GGTTTCTCGACGGTTTGAATGAGGGATAGGGGGGCTAATATAAGGGCCAAGTACCCAGCAACCCA
646 AG-TTCTCGA-GGTTTG-ATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCCAGC-ACCCA
* * * * *
6810 TTGCCAACATCATTTGCGGACACCCTCCCG-CCCCCCAATCACCGGAACCCCAATGCTGCCGGTC
706 TCG-C-ACATCATGTGCGCACACCC-CCCGCCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTC
* *
6874 AAGTTCTCT----A-G----G--GATGGTGCCCCGGGTGAAAACAAATGTGTGCACCCAAGCACA
768 AAGTTCTCTGGCAATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATGTG-GCA-CC-AGCACA
* * * **
6928 TGCCCCGAG-CCAGCATGTGCAACCTGTTAACCCCTCGGTCCTAATCTGATCTTTAGACTGGGAA
830 TG-CCTGAGCCCAGCATGTGC-ACCCG-CAA-CCCTCGGTCC-GGTCTGATC-TTAGACTGGGAA
6992 -GAACTCCATATG
889 TGAACTCCATATG
* * * *
7004 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACATGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *** *
7069 CGGCCAAAGGGGCAGTATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCGGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCCTC-ACGTGCTGCCAATCC
* * * *
7134 TACTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
7199 CCGACGAAACGA----GCGGACGGACGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * *
7260 TGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATATTCATATTTTCGCCATGTCAATGCCATTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTT
*
7325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
7390 TAATTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
390 TCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* *
7455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
7520 ATTCAGCTAAAAAGTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
7585 ACACTTTAATGGCTACGGGCAGGAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTT
*
7650 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATC
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCAGCACCCATCGCACATC
* * * * *
7714 ATGTGCGAACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGG
715 ATGTGCGCACACCCCC-CGCCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGG
* * **
7779 CAATGCTCCGACGATGGAGCCCTGAGTGAAAAAAAATGTGGCACCAGTGCATGCCTGAGCCCAGC
779 CAATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGC
* * *
7844 ATGTGCACCCGCAACCCTCGCTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATG
844 ATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
7902 GTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACAAGCGCGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
7967 CGGCTAGAGGGGCAGGATGCAAAAGCTGGGGATCGGGCGGGTGCCCTTCTACGTGCTGCCGATCA
66 CGGCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCCTC-ACGTGCTGCCAATCC
* * * * *
8032 TGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAGTGAACTCTATATGCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * *
8097 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGATAGGCGGGATGCGTAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
8162 TGGATCGATAGGGTGGTAGGTGGGGTTAGGCATATCTTCATATTTTTTCCATGCCAATGCCATTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTT
* * *
8227 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGGAAGCCGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
8292 TCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTGGGGATTTTTTTAAAATTTTTTCA
390 TCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* * * *
8357 AAAGTAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
8422 ATTCAGCT-AAAACATCGAAGTGTACAGGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCA
520 ATTCAGCTAAAAAC-TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
8486 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCCTCCTTTAAGGGGGTG-GA
584 GACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTTAAATG-CT-CTTTAAGGGGGTGTGA
*
8550 GTTCTTGA-GTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAAGTACCCAGCACCCATCGCA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCCAGCACCCATCGCA
** * * *
8613 CTATCAATGGTGCGCACAGCCCCCCAACTCCCCAATCGTCGGAA-CCAAATGCCGCCGGTCAAGT
711 C-ATC-AT-GTGCGCACA-CCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAAGT
** * *
8677 T-TCCAGCAATACTCCGACGATGGTGCCCC-AGGTGAAAAAAAATGTGACACCAGCACATGCCTG
772 TCTCTGGCAATGCTCCGACGATGGTGCCCCGA-GTGAAAAAAAATGTGGCACCAGCACATGCCTG
* *
8740 AGCCCAGCATCTGCACCCGCAACCCTTGGTCGCGGTCTGATCTTAGACT-GGAATGAACTCCATA
836 AGCCCAGCATGTGCACCCGCAACCCTCGGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCATA
8804 TG
900 TG
* * *
8806 CCTTAGACCTGGAATATAAACTCCGTATGCCTAAGTCAACCCACGGAAAACGAGCGTGCGGG-GC
1 -CTTAGA-CTGGGA-ATGAACTCCGTATGCCTAAGTCAACCCA-TG-AAACGAGCGTGCGGGCG-
* * *
8870 CTCAGCC-GCCAGA-GGGCAGGATGCACAAA-CCGGGGGATCGGCCAGGTCCCCCTCAGCATGCT
60 CTCAGCCGGCCAGAGGGGCAGGATGCA-AAAGCC-GGGGATCGGTCGGGTCCCCCTCA-CGTGCT
* * * * * * * * * *
8932 GCCGAGCCTGCTATCGCAATCCTCGGTCGA-TCCAATGTTAGACTTGGAATGAACTCTGTATACC
122 GCCAATCCTACTACCGCAACCCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCC
* ** * * * * *
8996 TAAGCCAACCGATGAAACGAGCAAGCTGGCTGGCAGGAACTACGCCGGCCAGAGAGGTGGGAT-C
187 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC
* * **
9060 TACAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCA
252 -GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCA
*
9125 ATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
316 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* *
9190 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAA
381 CAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAA
* * * ** *
9255 ATTTTCTCAGAAGGAGTCTTGGCCCCAAACATATTAGACGTGATCCTTATATTTTTTTTGGCATG
446 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* *
9320 CACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCC
511 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
9385 CCATTTCAGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTAAAATGCTTTTTAAGGGG
576 CCATTTCAGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGG
9450 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTA-CCAGCACCCA
641 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCAGCACCCA
* ** * **
9513 TCGCACATCATGTGTGCACATCCCCTGGGCCCCCCCAAATCGCCGAAACCCCAATGCCGTTGGTC
706 TCGCACATCATGTGCGCACA-CCCC-CCGCCCCCCC-AATCGCCGGAACCCCAATGCCGCCGGTC
* * * * * * * * ** *
9578 ATGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAACAAATTTGTCAGTAGCACAT-T
768 AAGTTCTCTGGCAATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATGTGGCACCAGCACATGC
* * * *
9642 CTCGAGCCAAGCATGTGCACCCGCAACTCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTCC
833 CT-GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
*
9707 GTATG
897 ATATG
9712 C
1 C
9713 CTAAGTCAAC
Statistics
Matches: 2380, Mismatches: 276, Indels: 108
0.86 0.10 0.04
Matches are distributed among these distances:
892 2 0.00
893 18 0.01
894 39 0.02
895 7 0.00
896 5 0.00
897 34 0.01
898 204 0.09
899 16 0.01
900 14 0.01
901 64 0.03
902 526 0.22
903 298 0.13
904 127 0.05
905 129 0.05
906 133 0.06
907 677 0.28
908 67 0.03
909 20 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCCTCACGTGCTGCCAATCCT
ACTACCGCAACCCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGGCA
ATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
GTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
Found at i:9215 original size:907 final size:895
Alignment explanation
Indices: 6097--14618 Score: 8267
Period size: 902 Copynumber: 9.7 Consensus size: 895
6087 CCGATCCGAT
* * * * * * *
6097 CTTAGACTGGGAATGAACTCCTTGTGCCTAAGTCAACCCATGAAATGAGCATAC-AGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGC-CTCAG
*
6161 CCGGCCA-ATGGGGCAGGATGCGA-AAGCCGGGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAA
65 CCGGCCAGA-GGGGCAGGATGC-ACAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAA
* * * * *
6224 TCCTACTGCCGCAACCCTCAGTCTGGTCCAATCTTAGAATGGGAATGAACTCTGTATGCCTAAGC
128 TCCTACTACCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
6289 CAACCAATGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAG
192 CAACCGACGAAACGAGC-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
** * *
6354 CTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTTTGCCATGCTAATGCCA
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCA
* *
6419 TTTTTATGGCTCGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
6484 GACTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTACGGTTTGTGATTTTTTTAAAATTTTT
385 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTT
* * *
6549 TTAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCACGCACAA
450 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAA
6614 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
6679 TCAGACACTTTAATGGCGACTGGGCAGCAAACTTGTAAAAATCTC-AATGCTGTTTAGGGGGGTG
579 TCAGACACTTTAATGGCTACT-GGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTG
* *
6743 TGGGTTTCTCGACGGTTTGAATGAGGGATAGGGGGGCTAATATAAGGGCCAAGTACCCAGCAACC
642 TGAG-TTCTCGA-GGTTTG-ATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTA-CCAGC-ACC
* * * ** *
6808 CATTGCCAACATCATTTGCGGACACCCTCCCG-CCCCCCAATCACCGGAACCCCAATGCTGCCGG
701 CATCG-C-ACATCATGTGCGCACACCC-CCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGG
* * * *
6872 TCAAG-TT---C-T-CT-AG-GGATGGTGCCCCGGGTGAAAACAAATGTGTGCACCCAAGCACAT
763 TCAAGTTTCCGCATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTG-GCA-CC-AGCACAT
* * * **
6929 GCCCCGAG-CCAGCATGTGCAACCTGTTAACCCCTCGGTCCTAATCTGATCTTTAGACTGGGAA-
825 G-CCTGAGCCCAGCATGTGC-ACCCG-CAA-CCCTCGGTCC-GGTCTGATC-TTAGACTGGGAAT
*
6992 GAACTCCATATG
884 GAACTCCGTATG
* * * * *
7004 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACATGAAATGAGCGTG-TGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGC-CTCAG
* * ** *
7068 CCGGCCAAAGGGGCAGTATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCGGCGTGCTGCCAATC
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAATC
* *
7133 CTACTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTACCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
7198 ACCGACGAAACGAGC-G-GACGGACGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGT
194 ACCGACGAAACGAGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * * *
7261 GGATCGATAGGGTGCTAGGTGGGTTTAGGCACATATTCATATTTTCGCCATGTCAATGCCATTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
*
7326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
** * *
7391 AATTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
389 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
* *
7456 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
7521 TTCAGCTAAAAAGTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
7586 CACTTTAATGGCTACGGGCAGGAAACCTATAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
7651 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
7716 GTGCGAACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCTGGCA
714 GTGCGCACACCCCC-CGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTT-TC-CGC-
* * * * **
7781 ATGCTCCGACGATGGAGCCCTGAGTGAAAAAAAATGTGGCACCAGTGCATGCCTGAGCCCAGCAT
775 ATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
* *
7846 GTGCACCCGCAACCCTCGCTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATG
840 GTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
7902 GTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACAAGCGCGCGGGTG-CTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-GCCTCAG
* * * * * * *
7966 CCGGCTAGAGGGGCAGGATGCAAAAGCTGGGGATCGGGCGGGTGCCCTTCTA-CGTGCTGCCGAT
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTC-AGCGTGCTGCCAAT
* * * * * **
8030 CATGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAGTGAACTCTATATGCCTAAGCC
129 CCTACTACCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
8095 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGATAGGCGGGATGCGTAAGC
193 AACCGACGAAACGAGC-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * *
8160 CGTGGATCGATAGGGTGGTAGGTGGGGTTAGGCATATCTTCATATTTTTTCCATGCCAATGCCAT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
* * *
8225 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGGAAGCCG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * *
8290 ACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTGGGGATTTTTTTAAAATTTTTT
386 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* * * *
8355 CAAAAGTAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAAAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
8420 AAATTCAGCT-AAAACATCGAAGTGTACAGGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTT
516 AAATTCAGCTAAAAAC-TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
8484 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCCTCCTTTAAGGGGGTG-
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CT-CTTTAAGGGGGTGT
*
8548 GAGTTCTTGA-GTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAAGTACCCAGCACCCATCG
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTA-CCAGCACCCATCG
** * *
8611 CACTATCAATGGTGCGCACAGCCCCCCAACTCCCCAATCGTCGGAA-CCAAATGCCGCCGGTCAA
706 CAC-ATC-AT-GTGCGCACA-CCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAA
* * * *
8675 GTTTCCAGCAATACTCCGACGATGGTGCCCCAGGTGAAAAAAAATGTGACACCAGCACATGCCTG
767 GTTTCC-GC-ATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTG
* * *
8740 AGCCCAGCATCTGCACCCGCAACCCTTGGTCGCGGTCTGATCTTAGACT-GGAATGAACTCCATA
830 AGCCCAGCATGTGCACCCGCAACCCTCGGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTA
8804 TG
894 TG
* *
8806 CCTTAGACCTGGAATATAAACTCCGTATGCCTAAGTCAACCCACGGAAAACGAGCGTGCGGGGCC
1 -CTTAGA-CTGGGA-ATGAACTCCGTATGCCTAAGTCAACCCAC-G-AAACGAGCGTGCGGGGCC
* * * *
8871 TCAGCC-GCCAGA-GGGCAGGATGCACAAACCGGGGGATCGGCCAGGTCCCCCTCAGCATGCTGC
61 TCAGCCGGCCAGAGGGGCAGGATGCACAAGCC-GGGGATCGGTCGGGTCCCCCTCAGCGTGCTGC
* * * * * * * * * * *
8934 CGAGCCTGCTATCGCAATCCTCGGTCGATCCAATGTTAGACTTGGAATGAACTCTGTATACCTAA
125 CAATCCTACTACCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
8999 GCCAACCGATGAAACGAGCAAGCTGGCTGGCAGGAACTACGCCGGCCAGAGAGGTGGGAT-CTAC
190 GCCAACCGACGAAACGAGC-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-GC
* **
9063 AAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATG
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
*
9128 CCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
317 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
*
9193 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATT
382 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATT
* * * ** *
9258 TTCTCAGAAGGAGTCTTGGCCCCAAACATATTAGACGTGATCCTTATATTTTTTTTGGCATGCAC
447 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
9323 AAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCA
512 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
9388 TTTCAGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTAAAATGCTTTTTAAGGGGGTG
577 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
9453 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGC
642 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * ** *
9517 ACATCATGTGTGCACATCCCCTGGGCCCCCCCAAATCGCCGAAACCCCAATGCCGTTGGTCATGT
707 ACATCATGTGCGCACA-CCCC-CCGCCCCCCC-AATCGTCGGAACCCCAATGCCGCCGGTCAAGT
* * * * ** *
9582 TCTCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAACAAATTTGTCAGTAGCACAT-TCTCG
769 T-TCCG-C-ATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCT-G
*
9646 AGCCAAGCATGTGCACCCGCAA--CTC--T-C-G---G-TC-----C---G---G---TCCG-AT
830 AGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
9686 -
895 G
* * * *
9686 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC-GAGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGC-CTCAG
* *
9750 TCGGCCAGAGGGGCAGGATGCGA-AAGCCGGGTATCGGTCGGGTCCCCCTCAGCGTGCTGCCAAT
65 CCGGCCAGAGGGGCAGGATGC-ACAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAAT
* * * * * ** * * * **
9814 TCTGCTGCTGCAACCCTC--T--ATCC-AAATGA-AC--GG-ACGGACGGGCG-A-GCACTACA-
129 CCTACTACCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGC-CTA-AG
* * * * * ** ** * * *
9867 CCAGCC-A-GAGAGGTAG-GATGC-GCAAGCCGTGG-A-T-CGATAGGGTAG-TAGGTGGGTTTA
191 CCAACCGACGAAACG-AGCG--GCGGC-GGGCG-GGCACTACG-CCGGCCAGAGAGGCGGG-AT-
* * *** ** ** * ** * *
9924 G-GCACATCTTCATTTTTC--TACTGTGCCA-ATGCCATTTTTATGG--C-T-TGT-AAATTCTT
248 GCGCA-AGC--CGTGGATCGATAGGGTGGTAGGTG---GGTTTA-GGCACATCT-TCATATTTTT
* * * * *** * *
9980 ACAATGGTCCCTTAA-GCC---TTCAT-G--TG-AAGTT--T-C-ATGG--CAAGACGAC-TCAT
305 GCCAT-G--CC--AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * ** * *** * * **
10030 -T---TTTTCTTTTTCATGA--A-T--TTTGAAACTTTTT-AC-A-ATTCAGGA-TTTTT----T
365 GTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTTAAAACTTTTTACGGT
** * * *
10078 TTTA-ATTTTTTTAGAAGGA-ATTTT--------G----GG-CCCAAACATGGTAGATGTGATCC
428 TCGAGATTTTTTTA-AA--ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * **
10128 TTGTATTTTTGTTGGCATG------------CA--TAAGAACTTAAAGTGTACAGGATTTTGTGA
490 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
10179 CCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACAGGTAGCAAACCTGTAAAATC
555 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* **
10244 TCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGAAAATATAAGG
620 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
10309 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGGCCCCCCCAATCGTCGGA
685 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC-GCCCCCCCAATCGTCGGA
* * *
10374 ACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAA
747 ACCCCAATGCCGCCGGTCAAGTT-TCCG--CATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAA
* *
10439 TATGGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAA-CC-C--T-C-G---G----T-
809 TGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTA
10490 --C------TG-A-TCCG-AT-
874 GACTGGGAATGAACTCCGTATG
* * *
10500 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACCAAACGACCGTGC-GGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGC-CTCAG
* * * * * * *
10564 TCGGCCAGAAGGGCAGGATG-AGCCAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGTTACCGAT
65 CCGGCCAGAGGGGCAGGATGCA-CAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAAT
** * * ** * *
10628 CCTGTTGCCGCAACCCTCAGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTACTACCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
10693 AACCGAGGAAATGAGCGGGTGGACGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGTGCAAGC
193 AACCGACGAAACGAGC-GGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * * * *
10758 TGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCGTGCCAATGCCAT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
* * * *
10823 TTTTATGGCTTATAAATTCA-ACAATGGT-CCTTAAGCCTTCATGTGAAGTTTCGTGCCAAGATG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * *
10886 ACTCGTTTTC------T-ACGATTTTCAAAACTTTCTATGGTTCAAGATTTTTTTAAAA-TTTTT
386 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
*
10943 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
11008 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
11073 AGAAACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
11138 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAACTACCAGCACCCATCACACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
11203 CATGTGCGCACACCCACCCGGCCCCCCCAATCATCGGAACCCCAATGCCGCCGGTC-AGGTT---
711 CATGTGCGCACACCC-CCC-GCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTTTCCG
** ** * ** * * *
11264 C-T-CT--GGTGATGGTGATCCGGGCGAAAAAAAAGGCAGCACCAACACATG-CTCGGGCCTAGC
774 CATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCT-GAGCCCAGC
* * * * ** *
11324 ATGTGCATCTGTAACCTTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
838 ATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
11382 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTG-CTCA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-GCCTCA
* * * * * **
11445 GCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCAGTTCCCCAC-CAGCGTGCTACTGA
64 GCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCC-CTCAGCGTGCTGCCAA
* * * * * * * *
11509 TCCTACTGCCACAACCTTTGATTCGGTCCGATATTAGACTGGGAATCAACTCCGTATGCCTAAGT
128 TCCTACTACCGCAACCCTCG-GTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** *
11574 CAACCGACGAAACTAGC-G-GGCGGGCGGGCACTATACCGACCAGAGAGGCGGGATGCGCAAGCC
192 CAACCGACGAAACGAGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* ** * * **
11637 GTGGATCAATAGGGCAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTC-TGTAAATGCCAT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC-CATGCCAATGCCAT
*
11701 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG-TTCTATGGGAAGAC
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC-ATGGCAAGAC
* * *
11765 GACTCGTTTTTTATTTTTTACGATTTTTAAAACTTTTTACGGTTCTG-GATTTTTTTTTAAATTT
385 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GAGA-TTTTTTTAAAATTT
* * *
11829 TTTTAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
448 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * *
11894 AAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACAATTTGAAAAAGGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
11959 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAA-GGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * * *
12023 AAGTTCTCAAGGTTTGATGGGGGATAGGGGGCC-ATATAAGGGCCAAGTACTAACACCCATCACA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * * *
12087 CATCATGTGCACCCACCAACCCCCGGCCCCCCTAATCGCCAGAACCCCAATGCTGTCGAG-CAGG
708 CATCATGTG--CGCA-C-ACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCG-GTCAAG
* ** * * ** * *
12151 TTCTCTGCCGATGCTCCGGTGATGGTGGCCCAGATGAAAAGAAATGTGGCACTAGCACATGTCC-
768 TT-TCCG-C-ATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATG-CCT
* * * *
12215 GAGCCCAGCATGTGCACCCGTAAACCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
829 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
12280 TG
894 TG
* *
12282 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-GACGAGTG-ATCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CG-GGGCCTCA
* * * * * * * *
12345 GTCGGCCAGAGGGGAAGGATGCGCAAGCAGTGGATCGATCGGGTGCCCCTTC-GCATGCTGCCAA
64 GCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCCTCAGCGTGCTGCCAA
** * * * *
12409 TCCTACTGTCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCTTAAGC
128 TCCTACTACCGCAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
12474 AAACCGACGAATCGAGCGGAAGGGCAGGCGGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAAG
192 CAACCGACGAAACGAGCGG--CGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
** ** * * **
12539 CCGTGGATCGATAGAATGGTACATGGGTTTAAGCACATCTTCATATTTCTGCTGTGCCAATGCCA
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCA
* *
12604 TTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCATGTGAAGTTTCATGCCAAGAC
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
*
12669 GACTCGTTTTCTATTTTTCACGATTTTTCAAAACTTTTTACGGATCGAGA-TTTTTT-AAATTTT
385 GACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * * *
12732 TTTAGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAG
449 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * *
12797 AATAATTCAGCTAAAAATTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
12862 TC-GTACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-T
579 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
12925 GAGTTCTCGAGGTTTGATGAGGGATATGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
12990 CATCATGTGCACACACCCCCTCAG-CCCCCCAATCGTCGAAACCCCAATGCCGTTGGTCAGGTTC
708 CATCATGTGCGCACACCCCC-C-GCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTT-
* ** *
13054 TCCG--T--T-----GATGGTGCCCCGGGCGGAAAAAAATACGGCACCAACACATG-CTCGAGCC
770 TCCGCATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCT-GAGCC
* * * *
13109 CAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAATTCCGTATG
834 CAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13171 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCC-CAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-GCCTCAG
* * * * * * * *
13235 CCGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCAGCCGGGTCCCCTTCAGTGTGCTGCTAATC
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAATC
* * * * * * * * *
13300 TTCCTATCGTAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTCTACCTAAGCCA
130 CTACTACCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
13365 ATAGATGAAACGAGCGGGCGGGTGGGTGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCC
194 ACCGACGAAACGAGC-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * *
13430 GTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATT
*
13495 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * * * *
13560 CTCGTTTTATATTTCTCATGATTTTCAAAACTTTTTATGGTTTGGGATTTTTTT--AATTTTTTC
387 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* * *
13623 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTGGGCATGCACAAAAA
452 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * *
13688 AGTTCAGCTAAAAACTCAAAGTGTACAGGATTTTGCGAACATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* ** * ** * * * *
13753 GACACTTTAA-GG-----GG--G------TGTGAGTTCTC-GA-G-GATTGATGAGGG-AT-AG-
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * * * * * *
13798 ----G-GG---GCCGA--TATA-AGGGCCAA-GT-A----CTAGTACC--CA-TCA-CACATCAT
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-CAT
* * * * ** * * *
13842 -GTGCGCACAC-CCCTCTCGGCCCCCCCAATCACCGGAACCCCAACGCCGTCGGTC-AGGTT---
711 CATGTGCGCACACCC-C-CCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTTTCCG
** * ** *
13901 C-T--T-CGACGATGGTGCCTTGGGTGAAAAAAAATACGACACCAGCACATGCCCT-AGCCCAGC
774 CATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATG-CCTGAGCCCAGC
* * * *
13961 ATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATG
838 ATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
14019 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGACCGTGC-GGGCGATCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGC-CTCAG
* * * ** *
14083 CCGGCCAAAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCAGCGTGCTGCCTAT-
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAATC
* * * * *
14147 -T-GT--CGCAACCCTCGGTTTGGTCTGATCTTAGATTGGAAATGAACTCCGTATGCCTAAGCCA
130 CTACTACCGCAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * * * * * *
14208 ACAAACAAAATGATCAAGCGGGCGGGCAGGCATTACGTCGGCCAGAGAGGTGGGATGCGCAAGTC
194 ACCGACGAAACGAGC-GGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
14273 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATT
* * *
14338 TTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGATGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
14403 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGATATTTTTTAAAAATTTTTTC
387 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
** * *
14468 AGAAGGAGTTTTATCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
452 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * *
14533 AATTGAGCTAATAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
14598 GACACTTTAATGGCTACTGGC
582 GACACTTTAATGGCTACTGGC
14619 CAGAGGGGCA
Statistics
Matches: 6411, Mismatches: 892, Indels: 679
0.80 0.11 0.09
Matches are distributed among these distances:
812 1 0.00
813 143 0.02
814 287 0.04
815 11 0.00
816 1 0.00
819 3 0.00
820 3 0.00
821 2 0.00
822 2 0.00
823 10 0.00
824 22 0.00
825 9 0.00
826 25 0.00
827 59 0.01
828 9 0.00
829 1 0.00
830 4 0.00
832 2 0.00
833 4 0.00
834 4 0.00
835 4 0.00
836 4 0.00
837 1 0.00
838 19 0.00
839 13 0.00
840 4 0.00
841 7 0.00
843 281 0.04
844 15 0.00
845 139 0.02
846 12 0.00
847 13 0.00
848 244 0.04
849 8 0.00
850 8 0.00
851 7 0.00
852 7 0.00
853 3 0.00
854 42 0.01
855 5 0.00
856 54 0.01
857 6 0.00
858 9 0.00
859 5 0.00
860 1 0.00
861 7 0.00
862 3 0.00
863 9 0.00
864 24 0.00
865 25 0.00
866 13 0.00
867 63 0.01
868 195 0.03
869 3 0.00
870 4 0.00
871 11 0.00
872 6 0.00
873 1 0.00
874 12 0.00
875 17 0.00
876 50 0.01
877 41 0.01
878 120 0.02
879 21 0.00
880 40 0.01
881 5 0.00
882 172 0.03
883 4 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 64 0.01
888 209 0.03
889 647 0.10
890 10 0.00
891 5 0.00
892 2 0.00
893 18 0.00
894 34 0.01
895 11 0.00
896 8 0.00
897 35 0.01
898 202 0.03
899 27 0.00
900 311 0.05
901 74 0.01
902 735 0.11
903 343 0.05
904 304 0.05
905 135 0.02
906 112 0.02
907 681 0.11
908 62 0.01
909 20 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGCCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCAATCC
TACTACCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTTTCCGCATGCTC
CGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCAC
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:11385 original size:26 final size:26
Alignment explanation
Indices: 11356--11408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11346 TTGGTCTGAT
*
11356 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
11382 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
11408 C
1 C
11409 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:11958 original size:889 final size:885
Alignment explanation
Indices: 9852--14618 Score: 5193
Period size: 889 Copynumber: 5.4 Consensus size: 885
9842 AACGGACGGA
* * ** *
9852 CGGGCGAGCACTACACCAGCCAGAGAGGTAGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGT
1 CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
9917 GGGTTTAGGCACATCTTCATTTTTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTAC
66 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
9982 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTCTTTTTCATGAA
131 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-A
* ** * * * *
10047 TTTT-GAAACTTTTTACAATTCAGGATTTTTTTTTAATTTTTTTAGAAGGAATTTTGGGCCCAAA
195 TTTTCAAAACTTTTTACGGTTC-GGA-TTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * **
10111 CATGGTAGATGTGATCCTTGTATTTTTGTTGGCATG------------CA--TAAGAACTTAAAG
258 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
10162 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACAGGT
323 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
10227 AGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
388 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** * *
10292 AGGGGGAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGG
453 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCC-CCGG
10357 CCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG
517 CCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--TG--G-T-----GATGGTG
* * *
10422 CCCCGGGCGAAAAAAAATATGGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAA-CC-C
571 ACCCGGGCGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTC
*
10485 --T-C-G---G----T---CT--G-AT---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATA
636 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * * * *
10526 CCTAAGTCAACCCACCAAACGACCGTGCGGGCACTCAGTCGGCCAGAAGGGCAGGATGAGCCAGC
701 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * ** * * **
10591 CGGGGATCGATCGGGTCCCCCTCAGCGTGTTACCGATCCTGTTGCCGCAACCCTC-AGTCCAATC
766 CGGGGATCGATCGGGTCCCCC-CAGCGTGCTACTGATCCTACTGTCGCAACCCTCGA-TTCGGTC
* * *
10655 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAATGAGCGGGTGG
829 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG
** * * *
10715 ACGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGTGCAAGCTGTAGATCGATAGGGTGGTAGG
1 -CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
10780 TGGGTTTAGGAACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTATAAATTCA-A
65 TGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
10844 CAATGGT-CCTTAAGCCTTCATGTGAAGTTTCGTGCCAAGATGACTCGTTTTC------T-ACGA
130 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
10901 TTTTCAAAACTTTCTATGGTTCAAGATTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAAC
195 TTTTCAAAACTTTTTACGGTTC-GGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
10966 TTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
11031 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAAACTTTAATGGCTACTGGTA
324 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
11096 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
11161 GGGGGCCAATATAGGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCCACCCGGCC
454 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCC
* * *
11226 CCCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGGTGATCCGGGCGAAAA
519 CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGGTGACCCGGGCGAAAA
** * * * * * * * * ** *
11291 AAAAGGCAGCACCAACACATGCTCGGGCCTAGCATGTGCATCTGTAACCTTCGGTTTGGTCTGAT
584 AAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGAT
11356 CTTAGACTGGGAATGAACTCTGTATGCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACC
649 CTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
11420 CACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTC
713 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC
* * * * * * * *
11485 AGTTCCCCACCAGCGTGCTACTGATCCTACTGCCACAACCTTTGATTCGGTCCGATATTAGACTG
778 GGGTCCCC-CCAGCGTGCTACTGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTAGACTG
* * *
11550 GGAATCAACTCCGTATGCCTAAGTCAACCGACGAAACTAGCGGG
842 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * **
11594 CGGGCGGGCACTATACCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGCAGTAGGT
1 CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
**
11659 GGGTTTAGGCACATCTTCATATTTCTACTC-TGTAAATGCCATTTTTATGGCTTGTAAATTCATA
66 GGGTTTAGGCACATCTTCATATTTCTAC-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
11723 CAATGGTCCCTTAAGCCTTCATGTGAAG-TTCTATGGGAAGACGACTCGTTTTTTATTTTTTACG
130 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
11787 ATTTTTAAAACTTTTTACGGTTCTGGATTTTTTTTTAAATTTTTTTAGAAAGATTTTTGGCCCCA
194 ATTTTCAAAACTTTTTACGGTTC-GGA--TTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* *
11852 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGA
256 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
11917 AGTGTACAGGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTTCAAACACTTTAATGGCTACTG
321 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
11982 GCAGCAAACCTGTAAAATTTCAAATGCTCTTTAA-GGGGTGTAAGTTCTCAAGGTTTGATGGGGG
386 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
12046 ATAGGGGGCC-ATATAAGGGCCAAGTACTAACACCCATCACACATCATGTGCACCCACCAACCCC
451 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACC--CCCC
* * * * *
12110 CGGCCCCCCTAATCGCCAGAACCCCAATGCTGTCGAG-CAGGTTCTCTGCCGATGCTCCGGTGA-
514 CGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCG-GTCAGGTTCTCTG--G-TGAT--GGTGAC
** ** * *
12173 TGGTGGCCCAGATGAAAAGAAATGTGGCACTAGCACATG-TCCGAGCCCAGCATGTGCACCCGTA
573 CCG-GG--C-GA--AAAA-AAATACGGCACCAGCACATGCT-CGAGCCCAGCATGTGCACCCGCA
* * *
12237 AACCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
630 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* * * *
12302 CGTATGCCTAAGTCAACCCACGAAACGAGCG-GACGAGTGATCAGTCGGCCAGAGGGGAAGGATG
695 CGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGTGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * * ** * *
12366 CGCAAGCAGTGGATCGATCGGGTGCCCCTTC-GCATGCTGCCAATCCTACTGTCACAACCCTCGG
759 CGCAAGCCGGGGATCGATCGGGT-CCCC-CCAGCGTGCTACTGATCCTACTGTCGCAACCCTCGA
* * * *
12430 TTCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCTTAAGCAAACCGACGAATCGAGCGGAA
822 TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----
12495 GGG
883 GGG
* ** * ** **
12498 CAGGCGGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGAATGGTACAT
1 CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * **
12563 GGGTTTAAGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
12628 AATGGTACCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-
* * *
12693 TTTTCAAAACTTTTTACGGATCGAGA-TTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAAT
195 TTTTCAAAACTTTTTACGGTTCG-GATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * * *
12757 TTGGTAGACGTGATCCTTGTATTTTT-TTGGGCATGCACAGAATAATTCAGCTAAAAATTTGAAG
259 TTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
12821 TGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTC-GTACACTTTAATGGCTACTGG
323 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGG
*
12885 CATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-TGAGTTCTCGAGGTTTGATGAGGGA
387 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
12949 TATGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTCAG
452 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGG
* * * * * *
13014 -CCCCCCAATCGTCGAAACCCCAATGCCGTTGGTCAGGTTCTCCGTTGATGGTGCCCCGGGCGGA
517 CCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGGTGACCCGGGCGAA
* *
13078 AAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCG
582 AAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCG
* * * *
13143 ATCTTAGATTGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAAC
647 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
13208 CAACGAAACGAGCGTGCGGGTGCCCAACCGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATC-AG
712 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-
* * * * * * * * *
13272 CCGGGTCCCCTTCAGTGTGCTGCTAATCTTCCTATCGTAACCCTCGA-TCTGGTCTGATCTTAGA
776 TCGGGTCCCC-CCAGCGTGCTACTGATCCTACTGTCGCAACCCTCGATTC-GGTCTGATCTTAGA
* * * ** *
13336 CTAGGAATGAACTCCGTCTACCTAAGCCAATAGATGAAACGAGCGGG
839 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
13383 CGGGTGGGTGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGT
1 C----GGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
13448 AGGTGGGATTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTC
62 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
13513 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTATATTTCTCA
127 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
13578 TGATTTTCAAAACTTTTTATGGTTTGGGATTTTTTT-AATTTTTTCAGAAGGAGTTTTGGCCCCA
192 CGATTTTCAAAACTTTTTACGG-TTCGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * *
13642 AACTTGGTAGATGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAGTTCAGCTAAAAACTCAA
256 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13707 AGTGTACAGGATTTTGCGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-GG-----G
321 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* ** * ** * * * * ** *
13766 G--G------TGTGAGTTCTC-GA-G-GATTGATGAGGG-AT-AG-----G-GG---GCCGA--T
386 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * * * * *
13807 ATA-AGGGCCAA-GT-A----CTAGTACC--CA-TCA-CACATCAT-GTGCGCACAC-CCCTCTC
451 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA-CATCATGTGCACACACCCCCCC
** * ** *
13859 GGCCCCCCCAATCACCGGAACCCCAACGCCGTCGGTCAGGTTCT-TCGACGATGGTG-CCTTGGG
515 GGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GGTGATGGTGACC-CGGG
* * * * *
13922 TGAAAAAAAATACGACACCAGCACATGCCCTAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGA
578 CGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
* **
13987 TCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGT
643 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
14052 CAACCCATGAAATGACCGTGCGGGCGATCAACCGGCCAAAGGGGCAGGATGCGCAAGCCGAGGAT
708 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * *
14117 CGACCGGGTCCCCCTCAGCGTG---CTG--CCTATTGTCGCAACCCTCGGTTTGGTCTGATCTTA
773 CGATCGGGTCCCCC-CAGCGTGCTACTGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTA
* * ** * *
14177 GATTGGAAATGAACTCCGTATGCCTAAGCCAACAAACAAAATGATCAAGCGGG
837 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A-CGAGCGGG
* * ** * * *
14230 CGGGCAGGCATTACGTCGGCCAGAGAGGTGGGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGT
1 CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14295 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATAC
66 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14360 AATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
**
14425 TTTCAAAACTTTTTACGGTTC-GATATTTTTTAAAAATTTTTTCAGAAGGAGTTTTATCCCCAAA
196 TTTCAAAACTTTTTACGGTTCGGAT-TTTTTT--AAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * *
14489 CTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAGCTAATAACTCGAAG
258 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14554 TGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
323 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
14619 CAGAGGGGCA
Statistics
Matches: 3337, Mismatches: 440, Indels: 264
0.83 0.11 0.07
Matches are distributed among these distances:
841 3 0.00
842 8 0.00
843 251 0.08
844 3 0.00
845 139 0.04
846 3 0.00
847 17 0.01
848 247 0.07
849 6 0.00
850 2 0.00
851 2 0.00
852 7 0.00
854 70 0.02
855 17 0.01
856 56 0.02
857 2 0.00
858 7 0.00
859 3 0.00
860 1 0.00
861 4 0.00
862 42 0.01
863 8 0.00
864 115 0.03
865 2 0.00
866 3 0.00
867 44 0.01
868 189 0.06
869 1 0.00
870 2 0.00
871 8 0.00
872 3 0.00
873 1 0.00
874 9 0.00
875 2 0.00
878 113 0.03
879 15 0.00
880 38 0.01
881 3 0.00
882 174 0.05
883 2 0.00
885 4 0.00
886 1 0.00
887 69 0.02
888 199 0.06
889 654 0.20
890 7 0.00
891 1 0.00
892 4 0.00
893 2 0.00
894 7 0.00
895 6 0.00
896 2 0.00
897 5 0.00
899 7 0.00
900 277 0.08
901 13 0.00
902 213 0.06
903 49 0.01
904 170 0.05
905 25 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (885 bp):
CGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCAAAACTTTTTACGGTTCGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCC
CCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGGTGACCCGGGCGAAAAAA
AATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
TCCCCCCAGCGTGCTACTGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
Found at i:12285 original size:26 final size:26
Alignment explanation
Indices: 12256--12308 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12246 CCGGTCCGAT
12256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12308 C
1 C
12309 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13174 original size:26 final size:26
Alignment explanation
Indices: 13145--13197 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13135 CCGGTCCGAT
* * *
13145 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13171 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
13197 C
1 C
13198 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14029 original size:26 final size:26
Alignment explanation
Indices: 13993--14045 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13983 CCGATCCGAT
*
13993 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14019 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14045 C
1 C
14046 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15588 original size:26 final size:26
Alignment explanation
Indices: 15537--15589 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15527 CTGGTTCATT
**
15537 CTTAGACTAGGAATGAACTATGTATG
1 CTTAGACTAGGAATGAACTACATATG
* *
15563 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTACATATG
15589 C
1 C
15590 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:16480 original size:26 final size:26
Alignment explanation
Indices: 16429--16481 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16419 CCGGTCTGAT
* * *
16429 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
16455 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
16481 C
1 C
16482 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:16665 original size:26 final size:26
Alignment explanation
Indices: 16614--16666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16604 CTGGTTTGAT
*
16614 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
16640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16666 C
1 C
16667 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16793 original size:185 final size:186
Alignment explanation
Indices: 16408--16818 Score: 549
Period size: 185 Copynumber: 2.2 Consensus size: 186
16398 TGTGCACCCG
* *
16408 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGAATCAA
1 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTCATATGCTTAGACTGGGAATCAA
* * * *
16472 CTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGA
66 CTCCATATGCCTAAGTCAACCCATGAAACGAACGTGCAGGCGCTCAGCCGACCAAAGGGGCAGGA
* ** * * *
16537 TGCGCAAGCCAGGGATCTATCGGGTCCCTTTCTGTGTGCTGCCGATCGTACTACCG
131 TGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACCA
* ** * * *
16593 CAACCCTTAGTCTGGTTTGATCTTAGACTGGGAATAAACTCT-ATATGCTTAGACTGGGAATGAA
1 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTCATATGCTTAGACTGGGAATCAA
* * * *
16657 CTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCAGGCGCTCAGCCGGCCAAAGGGGTAGGA
66 CTCCATATGCCTAAGTCAACCCATGAAACGAACGTGCAGGCGCTCAGCCGACCAAAGGGGCAGGA
** *
16722 TGCGCAAG-CAGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGTTGCCA
131 TGCGCAAGCCA-GGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACCA
**
16778 TAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTC
1 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
16819 GGTATGCCTA
Statistics
Matches: 192, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 2 0.01
185 189 0.98
186 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (186 bp):
TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTCATATGCTTAGACTGGGAATCAA
CTCCATATGCCTAAGTCAACCCATGAAACGAACGTGCAGGCGCTCAGCCGACCAAAGGGGCAGGA
TGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTACTACCA
Found at i:17536 original size:26 final size:26
Alignment explanation
Indices: 17507--17557 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17497 GGTCTGATCT
*
17507 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCATATGCG
17533 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
17558 TTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:17833 original size:159 final size:159
Alignment explanation
Indices: 17533--17899 Score: 427
Period size: 159 Copynumber: 2.3 Consensus size: 159
17523 TCCGTATGCG
* * * * * * *
17533 TAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCATGGAACGAGCGTGCAGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACAGGCGCTCAGCAG
* * * **
17598 GCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCTTATGTTTGCTACCGATCCTA
66 ACCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTATGCGTGCTACCGATCCTA
** * *
17663 CTTCCGCAACCCTTGGTTTGGT-TCGATCT
131 CTTCCGCAACCCTCAGTCTGGTCT-AATCT
*
17692 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTACAGGCGCTCAGCAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACAGGCGCTCAGCAG
* * *
17757 ACCAGAGGGGCAGGATGCGCAAG-CAGGGGATCGATCTGGTCCCCCTCTGCGTGCTACCGATCCT
66 ACCAGAGGGGCAGGATGCGCAAGCCA-GGGATCGACCGGGTCCCCCTATGCGTGCTACCGATCCT
* *
17821 -GTTACCGTAACCCTCAGTCTGGTCTAATCT
130 ACTT-CCGCAACCCTCAGTCTGGTCTAATCT
* * * * *
17851 TAAACTTGGAATGAACTCGGTATGCCTAAGCCAA-CTGACAAAACGAGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCT-ACGAAACGAGCG
17900 GGCGGGCGGG
Statistics
Matches: 177, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
158 6 0.03
159 170 0.96
160 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACAGGCGCTCAGCAG
ACCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTATGCGTGCTACCGATCCTA
CTTCCGCAACCCTCAGTCTGGTCTAATCT
Found at i:20585 original size:875 final size:871
Alignment explanation
Indices: 18791--20726 Score: 2717
Period size: 875 Copynumber: 2.2 Consensus size: 871
18781 GCCAGAGAGG
*
18791 CAGGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
1 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
18856 AACCTGTAAAATCTCAAATGCT-TTTTAAGGGGTGTGAGTTCTC----------GAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
18910 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTCGACCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACCCCC
* * * * *
18975 TATCGTCGGAACCCCAATGCTGCTGGTCAGGTTCTCTGGCAATGCTCCGGCGATGGTGGCCTGGG
196 AATCGCCAGAACCCCAATACTGCTGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGGCCTGGG
* * * * *
19040 CAAAAAAAAATGTGGCCCCAACACATGCCCGAGCCCAGCAAGTACACCTGTAACTCTCTGTCCGG
261 CAAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAACAAGTACACCCGTAACCCTCTGTCCGG
* * * * * * *
19105 TCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCGTACGGGTG
326 TCCAATCTTAGACTAGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCG
* * * *
19170 CTCAGTCGGCCAGAGGGGCAGAATGCGCAAGCCGGGGATCGGCTGCGTCCCCCTCAATGCGATGC
391 CTCAGTCGGCCAAAGGGGCAGAATGCGCAAGCCGGGGATCGGCTGAGTCCACCTCAACGCGATGC
* * * *
19235 CAATCCTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATTAACTCTGTGTGCCTA
456 CAATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATGCCTA
* * * *
19300 AGCCAACCAACGAAACGAGCGGGTGGGCGGGCACTACATCGACCAGAGACGCGGGATGCGTAAGC
521 AGCCAACCAACGAAACGAGAGGGCGGGCGGGCACTACATCGACCAAAGACGCGGGATGCGCAAGC
*
19365 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCCACCATGCCAATGGCAT
586 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCCACCATGCCAATGCCAT
* *
19430 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
651 TTTTATGGCTTCTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACG
* * *
19495 ACTCATTTTGTATTTTTCACGATTTTTGAGACTTTTTACGTTTCGAGATTTTTTTAAAATTTTTT
716 ACTCATTTTGTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGACATTTTTTTAAAATTTTTT
* * *
19560 CAGAAGGAGTTTTGGCACCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGTCATGCATAAAA
781 CAGAAGGAGTTTTAGCACCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
19625 CAATTCAGCTAAAAACTCGAAGTGTA
846 AAATTCAGCTAAAAACTCGAAGTGTA
* * * * *
19651 CAGGATTCTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTGGTAGCA
1 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
19716 AACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
19781 GGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCC-CGACCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGA-CCCC
* *
19845 CAATCGCCAGAACCCCAATTAC-G-TCGGTCGGGTTCTCTGGCGATGCTCCGACGATGGTGG-CT
195 CAATCGCCAGAACCCCAA-TACTGCT-GGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGGCCT
* * * *
19907 CGGG-AGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCACCCGTAACCCTC-G
258 -GGGCA-AAAAAAAATGCGGCACCAACACATGCCCGAGCCCAACAAGTACACCCGTAACCCTCTG
* *
19970 ATCCGGTCCGATCTTAGACTAGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
321 -TCCGGTCCAATCTTAGACTAGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
* * * * * * *
20035 CAGGCGTTCAGTCGGCTAAAGGGGCAGGATGCGTAAGTCGGGGATCGGTTGAGTCCACCTCAGCG
385 CAGGCGCTCAGTCGGCCAAAGGGGCAGAATGCGCAAGCCGGGGATCGGCTGAGTCCACCTCAACG
* * * * * * *
20100 TGCTGCTAATCCTACTGCCGTAACTCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCTGT
450 CGATGCCAATCCTACTGCCGCAACCCTCAG-TCCGATCCGATCTTAGACTAGGAATGAACTCTGT
* * * *
20164 ATGCCTAAGCCAACCGACGAAACGAACGGAAGGGCGGGCGGGCGCTAC-GCTGGCCAAAGA-GAC
514 ATGCCTAAGCCAACCAACGAAACG-A--G-AGGGCGGGCGGGCACTACATC-GACCAAAGACG-C
* * * **
20227 GGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCC
573 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCCACC
*
20292 ATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGCT
638 ATGCCAATGCCATTTTTATGGCTTCTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGCT
**
20357 TCATGGCAAGACGACTTGTTTTGTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGACATTTT
703 TCATGGCAAGACGACTCATTTTGTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGACATTTT
* * *
20422 TTTAAAATTTTTTCAGAAGGA-TATTTAGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGT
768 TTTAAAATTTTTTCAGAAGGAGT-TTTAGCACCAAACTTGCTAGACGTGATCCTTGTATTTTTGT
20486 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
832 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
20526 TAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
1 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
20591 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * * *
20656 GGCCAATATCAGGGCTAAGTACCGGCACCAATTGCACATCATGTGTGCACACCCCCGTCGAGCGC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-TCGA-CCC
20721 CCAATC
194 CCAATC
20727 ACAGGAACCC
Statistics
Matches: 945, Mismatches: 104, Indels: 37
0.87 0.10 0.03
Matches are distributed among these distances:
860 80 0.08
861 20 0.02
870 9 0.01
871 350 0.37
872 3 0.00
874 4 0.00
875 468 0.50
877 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACCCCC
AATCGCCAGAACCCCAATACTGCTGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGGCCTGGG
CAAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAACAAGTACACCCGTAACCCTCTGTCCGG
TCCAATCTTAGACTAGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCG
CTCAGTCGGCCAAAGGGGCAGAATGCGCAAGCCGGGGATCGGCTGAGTCCACCTCAACGCGATGC
CAATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATGCCTA
AGCCAACCAACGAAACGAGAGGGCGGGCGGGCACTACATCGACCAAAGACGCGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCCACCATGCCAATGCCAT
TTTTATGGCTTCTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACG
ACTCATTTTGTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGACATTTTTTTAAAATTTTTT
CAGAAGGAGTTTTAGCACCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTA
Done.