Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167885.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64552
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 1 of 2
Found at i:348 original size:12 final size:12
Alignment explanation
Indices: 331--371 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
321 TAAATATTAT
331 TAATATTAATAA
1 TAATATTAATAA
343 TAATATTAA-AA
1 TAATATTAATAA
354 TAATACTT-ATAA
1 TAATA-TTAATAA
*
366 TTATAT
1 TAATAT
372 CACTAGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:818 original size:34 final size:35
Alignment explanation
Indices: 740--820 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 35
730 TGTAAATTTA
*
740 ATTATAATTAA-AACAATTATAGTAATAATATTAT
1 ATTATAATTAATTACAATTATAGTAATAATATTAT
*
774 ATTAT-TTTAATTA-AATT-TA-TAATAACTATTAAT
1 ATTATAATTAATTACAATTATAGTAATAA-TATT-AT
807 ATTATAATTAATTA
1 ATTATAATTAATTA
821 TAAGTTAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
31 6 0.15
32 6 0.15
33 15 0.38
34 13 0.32
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (35 bp):
ATTATAATTAATTACAATTATAGTAATAATATTAT
Found at i:1258 original size:12 final size:12
Alignment explanation
Indices: 1229--1270 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
1219 AATATGATTA
*
1229 ATAATAA-ATTA
1 ATAATAATATTT
1240 ATAAATAATATTT
1 AT-AATAATATTT
1253 ATAATAATGATTT
1 ATAATAAT-ATTT
1266 ATAAT
1 ATAAT
1271 CTAACATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 2 0.07
12 11 0.41
13 14 0.52
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (12 bp):
ATAATAATATTT
Found at i:2447 original size:18 final size:17
Alignment explanation
Indices: 2405--2455 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 17
2395 TTAAAGATTG
2405 TAGTATGAATAATTAACT
1 TAGTAT-AATAATTAACT
*
2423 TAATATAATTAATCTAA-T
1 TAGTATAA-TAAT-TAACT
2441 TAGTATAAATAATTA
1 TAGTAT-AATAATTA
2456 TACTAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 4 0.14
18 19 0.68
19 5 0.18
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (17 bp):
TAGTATAATAATTAACT
Found at i:2472 original size:22 final size:21
Alignment explanation
Indices: 2422--2472 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
2412 AATAATTAAC
*
2422 TTAATATAATTAATCTAATTA
1 TTAAAATAATTAATCTAATTA
*
2443 GTATAAATAATT-ATACTAATTA
1 TTA-AAATAATTAAT-CTAATTA
2465 TTTAAAAT
1 -TTAAAAT
2473 TAAATAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 4 0.17
22 18 0.75
23 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAAAATAATTAATCTAATTA
Found at i:2634 original size:115 final size:117
Alignment explanation
Indices: 2464--2700 Score: 428
Period size: 116 Copynumber: 2.0 Consensus size: 117
2454 TATACTAATT
2464 ATTTAAAATTAAATAATTAATATATCCATTTAACATAATTTAAATATTTTCAAATAGTTAATATA
1 ATTTAAAATTAAATAATTAATATATCCATTTAACATAATTTAAATATTTTCAAATAGTTAATATA
2529 A-ATTAACTATATTGATTAATTTATAAATTA-ACAATTGTTAAATTATTTTATA
66 ATATTAACTATATTGATTAATTTATAAATTATACAATTGTTAAATTA--TTATA
2581 ATTTAAAATTAAATAA-TAATATATCCATTTAA-ATAATTTAAATATTTTCAAATAGTTAATATA
1 ATTTAAAATTAAATAATTAATATATCCATTTAACATAATTTAAATATTTTCAAATAGTTAATATA
2644 ATATTAACTATATTGATTAATTTATAAATTATACAATTGTTAAATTATTATA
66 ATATTAACTATATTGATTAATTTATAAATTATACAATTGTTAAATTATTATA
2696 ATTTA
1 ATTTA
2701 TTAATATAAT
Statistics
Matches: 118, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
115 42 0.36
116 45 0.38
117 31 0.26
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.46
Consensus pattern (117 bp):
ATTTAAAATTAAATAATTAATATATCCATTTAACATAATTTAAATATTTTCAAATAGTTAATATA
ATATTAACTATATTGATTAATTTATAAATTATACAATTGTTAAATTATTATA
Found at i:2713 original size:18 final size:19
Alignment explanation
Indices: 2683--2736 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
2673 TATACAATTG
*
2683 TTAAAT-TATTATAATTTA
1 TTAAATATAATATAATTTA
*
2701 TT-AATATAATATAA-ATA
1 TTAAATATAATATAATTTA
*
2718 TTAAATATATTAATAATTT
1 TTAAATATAAT-ATAATTT
2737 GGTTGATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
17 7 0.25
18 16 0.57
19 4 0.14
20 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAAATATAATATAATTTA
Found at i:2857 original size:25 final size:27
Alignment explanation
Indices: 2829--2887 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 27
2819 AAGCGAAAAG
2829 TTATAATTT-TAATAA-ATATAA-TAAT
1 TTATAATTTAT-ATAATATATAATTAAT
2854 TTATAATTTATATAATTATATAATTAAT
1 TTATAATTTATATAA-TATATAATTAAT
2882 TTATAA
1 TTATAA
2888 AATAATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
25 13 0.43
26 1 0.03
27 6 0.20
28 10 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TTATAATTTATATAATATATAATTAAT
Found at i:2866 original size:19 final size:19
Alignment explanation
Indices: 2831--2893 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 19
2821 GCGAAAAGTT
**
2831 ATAATTT-TAATAAATATA
1 ATAATTTATAATTTATATA
2849 ATAATTTATAATTTATATA
1 ATAATTTATAATTTATATA
* * *
2868 ATTATATAATTAATTTATAAA
1 ATAAT-TTA-TAATTTATATA
2889 ATAAT
1 ATAAT
2894 ATTTCTTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
18 7 0.19
19 13 0.36
20 2 0.06
21 14 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAATTTATAATTTATATA
Found at i:3424 original size:22 final size:22
Alignment explanation
Indices: 3389--3438 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
3379 TTATTAAAAC
* * *
3389 TAATAAATATTTAACTATTTTA
1 TAATAAATAATTAAATATATTA
*
3411 TAATATATAATTAAATATATTA
1 TAATAAATAATTAAATATATTA
3433 TAATAA
1 TAATAA
3439 TTATAATATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TAATAAATAATTAAATATATTA
Found at i:3658 original size:20 final size:20
Alignment explanation
Indices: 3630--3667 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3620 TTAGATTTAT
*
3630 TATAAATTATTATTTATAAA
1 TATAAATTACTATTTATAAA
*
3650 TATATATTACTATTTATA
1 TATAAATTACTATTTATA
3668 TTATTGTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TATAAATTACTATTTATAAA
Found at i:3854 original size:21 final size:21
Alignment explanation
Indices: 3830--3869 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3820 ATATTAATTA
3830 TATAAATATAATT-ATTAAACT
1 TATAAA-ATAATTAATTAAACT
*
3851 TATAAAATTATTAATTAAA
1 TATAAAATAATTAATTAAA
3870 TCATTAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TATAAAATAATTAATTAAACT
Found at i:4298 original size:23 final size:24
Alignment explanation
Indices: 4272--4318 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
4262 AATACTTATT
4272 AAAATT-ATTA-TATTATATAATTA
1 AAAATTAATTATTATTATA-AATTA
4295 AAAATTAAATTATTATTATAAATT
1 AAAATT-AATTATTATTATAAATT
4319 TTATAATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
25 8 0.38
26 7 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAATTAATTATTATTATAAATTA
Found at i:4759 original size:30 final size:32
Alignment explanation
Indices: 4705--4764 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
4695 ATAAAAATAA
4705 ATTTAAATTAATATAATTTATAATAATTATATT
1 ATTTAAATTAATATAA-TTATAATAATTATATT
* *
4738 ATTTAAATT-ATTTAA-TATAATATTTAT
1 ATTTAAATTAATATAATTATAATAATTAT
4765 CATAAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
32 5 0.20
33 9 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (32 bp):
ATTTAAATTAATATAATTATAATAATTATATT
Found at i:5322 original size:13 final size:14
Alignment explanation
Indices: 5289--5331 Score: 52
Period size: 13 Copynumber: 3.0 Consensus size: 14
5279 TTTATTTAAG
*
5289 TAATTCAAATATTACT
1 TAATT-AAATA-TAAT
5305 TAATTAAA-ATAAT
1 TAATTAAATATAAT
5318 TAATTAAATATAAT
1 TAATTAAATATAAT
5332 AGTGAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 11 0.44
14 6 0.24
15 3 0.12
16 5 0.20
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (14 bp):
TAATTAAATATAAT
Found at i:5777 original size:20 final size:21
Alignment explanation
Indices: 5752--5792 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
5742 ATAATTTTGA
5752 TATATTTA-ATTAATATATAT
1 TATATTTATATTAATATATAT
5772 TATATTTATTATTAATATATA
1 TATATTTA-TATTAATATATA
5793 GTATTTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATTTATATTAATATATAT
Found at i:5797 original size:20 final size:21
Alignment explanation
Indices: 5751--5800 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
5741 TATAATTTTG
5751 ATATATTTA--ATTAATATAT
1 ATATATTTATTATTAATATAT
5770 ATTATATTTATTATTAATATAT
1 A-TATATTTATTATTAATATAT
*
5792 A-GTATTTAT
1 ATATATTTAT
5801 ACTATATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 15 0.56
22 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
ATATATTTATTATTAATATAT
Found at i:5823 original size:24 final size:23
Alignment explanation
Indices: 5739--5825 Score: 79
Period size: 27 Copynumber: 3.6 Consensus size: 23
5729 TATAATTTGA
*
5739 AATATAATTTTGATATAT-TTAATT
1 AATATTATTTT-ATATATATT-ATT
* *
5763 AATA-TATATTATATTTATTATT
1 AATATTATTTTATATATATTATT
5785 AATATATAGTATTTATACTATATTATT
1 AATAT-TA-T-TTTATA-TATATTATT
5812 AATATTATTTTATA
1 AATATTATTTTATA
5826 ATTATAACAA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
22 12 0.23
23 6 0.12
24 12 0.23
25 2 0.04
26 7 0.13
27 13 0.25
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (23 bp):
AATATTATTTTATATATATTATT
Found at i:5824 original size:14 final size:13
Alignment explanation
Indices: 5739--5820 Score: 63
Period size: 13 Copynumber: 6.8 Consensus size: 13
5729 TATAATTTGA
5739 AATATA-ATT-TT
1 AATATATATTATT
*
5750 GATATAT-TTAATT
1 AATATATATT-ATT
5763 AATATATATTA-T
1 AATATATATTATT
5775 -AT-T-TATTATT
1 AATATATATTATT
*
5785 AATATATAGTATT
1 AATATATATTATT
*
5798 TATACTATATTATT
1 AATA-TATATTATT
5812 AATAT-TATT
1 AATATATATT
5821 TTATAATTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
9 5 0.09
10 2 0.04
11 11 0.20
12 6 0.11
13 19 0.34
14 13 0.23
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (13 bp):
AATATATATTATT
Found at i:5830 original size:20 final size:21
Alignment explanation
Indices: 5758--5829 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 21
5748 TTGATATATT
5758 TAATTAATATATATTATATTTA
1 TAATTAATATATATTAT-TTTA
* *
5780 TTATTAATATATAGTATTTATA
1 TAATTAATATATATTATTT-TA
*
5802 CTATATTATTA-ATATTATTTTA
1 -TA-ATTAATATATATTATTTTA
5824 TAATTA
1 TAATTA
5830 TAACAATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
20 4 0.10
21 4 0.10
22 19 0.45
23 9 0.21
24 6 0.14
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (21 bp):
TAATTAATATATATTATTTTA
Found at i:5925 original size:22 final size:22
Alignment explanation
Indices: 5889--5963 Score: 84
Period size: 22 Copynumber: 3.4 Consensus size: 22
5879 AATATTATTA
5889 TATAATTATTCTATTATTAATAAAT
1 TATAATTATT-TATT-TTAAT-AAT
*
5914 TA-AATTA-TTATTTAAATAAT
1 TATAATTATTTATTTTAATAAT
5934 TATAATTATTTATTTTAATTAA-
1 TATAATTATTTATTTTAA-TAAT
5956 TATAATTA
1 TATAATTA
5964 ATAACAACAT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
20 5 0.11
21 9 0.20
22 20 0.44
23 4 0.09
24 5 0.11
25 2 0.04
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (22 bp):
TATAATTATTTATTTTAATAAT
Found at i:6508 original size:15 final size:14
Alignment explanation
Indices: 6490--6531 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
6480 AATTTAATAT
6490 TATATTAATTAATTC
1 TATATTAA-TAATTC
6505 TATATTAATAATT-
1 TATATTAATAATTC
6518 TGATATATAATAAT
1 T-ATAT-TAATAAT
6532 ATAATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:6509 original size:20 final size:20
Alignment explanation
Indices: 6443--6511 Score: 54
Period size: 20 Copynumber: 3.4 Consensus size: 20
6433 TAAAGATTAT
6443 TATATTATACATTAATT-ATTC
1 TATATTAT--ATTAATTAATTC
* *
6464 -ATATTAATAATATTTGAATT-
1 TATATT-ATATTAATT-AATTC
6484 TAATATTATATTAATTAATTC
1 T-ATATTATATTAATTAATTC
6505 TATATTA
1 TATATTA
6512 ATAATTTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
19 5 0.13
20 15 0.39
21 13 0.34
22 5 0.13
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (20 bp):
TATATTATATTAATTAATTC
Found at i:6820 original size:22 final size:21
Alignment explanation
Indices: 6769--6820 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
6759 TAATTATTAA
6769 TAATATATTTAATTTATAATAT
1 TAATA-ATTTAATTTATAATAT
* *
6791 GAAGAATTTATATTTAATAA-AT
1 TAATAATTTA-ATTT-ATAATAT
6813 TAATAATT
1 TAATAATT
6821 AAATAAAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 5 0.21
22 15 0.62
23 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (21 bp):
TAATAATTTAATTTATAATAT
Found at i:7021 original size:23 final size:23
Alignment explanation
Indices: 6995--7070 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
6985 AAACTGTTGC
6995 AATTATTTAAATTAAAAATAAAT
1 AATTATTTAAATTAAAAATAAAT
* * * *
7018 AATTATGTAAA-TAGATAATCATT
1 AATTATTTAAATTA-AAAATAAAT
* *
7041 AATTAATTAAATATAAAACTAAAT
1 AATTATTTAAAT-TAAAAATAAAT
7065 AATTAT
1 AATTAT
7071 ATTATTATCT
Statistics
Matches: 39, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
22 2 0.05
23 25 0.64
24 10 0.26
25 2 0.05
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (23 bp):
AATTATTTAAATTAAAAATAAAT
Found at i:7448 original size:29 final size:28
Alignment explanation
Indices: 7416--7529 Score: 76
Period size: 29 Copynumber: 4.0 Consensus size: 28
7406 TAATCCTTAT
7416 TAATTATAATTAATTATTAATATTTATTA
1 TAATTATAA-TAATTATTAATATTTATTA
**
7445 TAATTATAATAGAAAATTAATATATT-TTA
1 TAATTATAATA-ATTATTAATAT-TTATTA
* * *
7474 AAATT-TAATTGGATTATTAA-ATATATTAA
1 TAATTATAA-T-AATTATTAATATTTATT-A
7503 TAA-TATTAATAA-TATTAATAATTTATT
1 TAATTA-TAATAATTATTAAT-ATTTATT
7530 CAATAGCCAT
Statistics
Matches: 65, Mismatches: 10, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
27 7 0.11
28 11 0.17
29 42 0.65
30 5 0.08
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (28 bp):
TAATTATAATAATTATTAATATTTATTA
Found at i:7502 original size:9 final size:9
Alignment explanation
Indices: 7496--7524 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7486 ATTATTAAAT
7496 ATATTAATA
1 ATATTAATA
7505 ATATTAATA
1 ATATTAATA
7514 ATATTAATA
1 ATATTAATA
7523 AT
1 AT
7525 TTATTCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATTAATA
Found at i:7560 original size:19 final size:19
Alignment explanation
Indices: 7538--7576 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7528 TTCAATAGCC
*
7538 ATTAATA-ATATTGTTAATT
1 ATTAATACA-ATTATTAATT
7557 ATTAATACAATTATTAATT
1 ATTAATACAATTATTAATT
7576 A
1 A
7577 AAGATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTAATACAATTATTAATT
Found at i:8039 original size:265 final size:264
Alignment explanation
Indices: 7548--8077 Score: 936
Period size: 265 Copynumber: 2.0 Consensus size: 264
7538 ATTAATAATA
7548 TTGTTAATTATTAATACAATTATTAATTAAAGATTATTAAAAAAATTTTAGTACATACAAGCTAA
1 TTGTTAATTATTAATACAATTATTAATTAAAGATTATTAAAAAAATTTTAGTACATACAAGCTAA
*
7613 TTTGAAATATAATTTTATTAACATTCACAAAATTAATAAGCAAGAAATTTAAAAAAATAAATTTG
66 TTTGAAATATAATTTTATTAACATTCACAAAATTAATAAGCAAGAAATTTAAAAAAATAAATCTG
*
7678 TTTATCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTAAAACATTATGATAT
131 TTTATCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTAAAACATTATAATAT
*
7743 TTTGTTTTATCATAAAACAATTGTTTCAGTTCAATAAAACTTATCCAAAATAAAATTATATTACT
196 TTTGTTTTATCATAAAACAATTGTTTCAGTTCAATAAAACTTATCCAAAATAAAATAATATTACT
7808 TTAT
261 TTAT
* *** *
7812 TTGTTAATTATTAATACAATTATTAATTAATGATTATTAAAATTTTTTTGGTACATACAAGCTAA
1 TTGTTAATTATTAATACAATTATTAATTAAAGATTATTAAAAAAATTTTAGTACATACAAGCTAA
* *
7877 TTTGAAATATAATTTTATTAACATTCGCAAAATTAATAAGCAAGAAATTTTTAAAAAATAAATCT
66 TTTGAAATATAATTTTATTAACATTCACAAAATTAATAAGCAAGAAA-TTTAAAAAAATAAATCT
*
7942 GTTTATCGAACAAGTTTAAATAGTTATAACTATTTGAACAATTATCTATTTAAAACATTATAACT
130 GTTTATCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTAAAACATTATAA-T
8007 -TTTTGTTTTATCATAAAACAATTGTTTCAGTTCAATAAAACTTATCCAAAATAAAATAATATTA
194 ATTTTGTTTTATCATAAAACAATTGTTTCAGTTCAATAAAACTTATCCAAAATAAAATAATATTA
8071 CTTTAT
259 CTTTAT
8077 T
1 T
8078 ACTATTTCAA
Statistics
Matches: 253, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
264 106 0.42
265 146 0.58
266 1 0.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (264 bp):
TTGTTAATTATTAATACAATTATTAATTAAAGATTATTAAAAAAATTTTAGTACATACAAGCTAA
TTTGAAATATAATTTTATTAACATTCACAAAATTAATAAGCAAGAAATTTAAAAAAATAAATCTG
TTTATCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTAAAACATTATAATAT
TTTGTTTTATCATAAAACAATTGTTTCAGTTCAATAAAACTTATCCAAAATAAAATAATATTACT
TTAT
Found at i:8351 original size:18 final size:20
Alignment explanation
Indices: 8314--8378 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 20
8304 ATAATAAAAT
*
8314 TAATATTATTATATAATAAG
1 TAATATTATTATAAAATAAG
8334 TAAT-TTATTA-AAAATAAG
1 TAATATTATTATAAAATAAG
8352 --ATATTACTTA-ATAAATAATG
1 TAATATTA-TTATA-AAATAA-G
8372 TAATATT
1 TAATATT
8379 TTTACTTAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
16 2 0.05
17 3 0.08
18 11 0.29
19 12 0.32
20 5 0.13
22 5 0.13
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (20 bp):
TAATATTATTATAAAATAAG
Found at i:8772 original size:23 final size:23
Alignment explanation
Indices: 8729--8778 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8719 AAGTTATTCA
*
8729 TAATTATACTAAATATAATTATT
1 TAATTATACTAAATATAATTAAT
* *
8752 TAATTA-ATTAAATCATTATTAAT
1 TAATTATACTAAAT-ATAATTAAT
8775 TAAT
1 TAAT
8779 GATTATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATTATACTAAATATAATTAAT
Found at i:8842 original size:16 final size:17
Alignment explanation
Indices: 8810--8842 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8800 AGTTGTATAT
*
8810 TATTAATTTATAATGAA
1 TATTAATTTAAAATGAA
8827 TATTAA-TTAAAATGAA
1 TATTAATTTAAAATGAA
8843 CAATTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
TATTAATTTAAAATGAA
Found at i:9460 original size:21 final size:20
Alignment explanation
Indices: 9432--9474 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
9422 TTCTTTATAT
9432 ATTAAATTT-TAATATATTAA
1 ATTAAATTTATAATA-ATTAA
*
9452 ATTATAATTTATATTAATTAA
1 ATTA-AATTTATAATAATTAA
9473 AT
1 AT
9475 AGAATTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTAAATTTATAATAATTAA
Found at i:9468 original size:17 final size:15
Alignment explanation
Indices: 9428--9459 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9418 ATTATTCTTT
*
9428 ATATATTAAATTTTA
1 ATATATTAAATTATA
9443 ATATATTAAATTATA
1 ATATATTAAATTATA
9458 AT
1 AT
9460 TTATATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATATTAAATTATA
Found at i:10483 original size:6 final size:6
Alignment explanation
Indices: 10472--10510 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
10462 TCAATATTGT
* *
10472 TTAATA TTAATA CTAAT- TTAATA TTGATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
10511 GCTTTTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:10493 original size:17 final size:17
Alignment explanation
Indices: 10471--10510 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
10461 ATCAATATTG
10471 TTTAATATTAATACTAA
1 TTTAATATTAATACTAA
* *
10488 TTTAATATTGATATTAA
1 TTTAATATTAATACTAA
10505 TATTAA
1 T-TTAA
10511 GCTTTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTAATATTAATACTAA
Found at i:10850 original size:15 final size:15
Alignment explanation
Indices: 10814--10857 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
10804 ACTTAATAAT
*
10814 ATAATTATAATTTTA
1 ATAATTATAATTTCA
10829 ATAATTATAATTTACA
1 ATAATTATAATTT-CA
10845 ATATTATTATAAT
1 ATA--ATTATAAT
10858 ATATTATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 13 0.52
16 4 0.16
18 8 0.32
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
ATAATTATAATTTCA
Found at i:10863 original size:13 final size:13
Alignment explanation
Indices: 10845--10917 Score: 85
Period size: 13 Copynumber: 5.5 Consensus size: 13
10835 ATAATTTACA
10845 ATATTATT-ATAAT
1 ATATTATTAAT-AT
* *
10858 ATATTATGAATTT
1 ATATTATTAATAT
* *
10871 ATAATAGTAATAT
1 ATATTATTAATAT
10884 ATATTATTAATAT
1 ATATTATTAATAT
10897 ATATTAATTAATAT
1 ATATT-ATTAATAT
10911 ATATTAT
1 ATATTAT
10918 AAAAAATAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
13 35 0.70
14 15 0.30
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
ATATTATTAATAT
Found at i:10884 original size:29 final size:28
Alignment explanation
Indices: 10827--10892 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 28
10817 ATTATAATTT
* *
10827 TAATA-ATTATAATTTACAATATTATTA
1 TAATATATTATAATTTACAATAGTAATA
*
10854 TAATATATTATGAATTTATAATAGTAATA
1 TAATATATTAT-AATTTACAATAGTAATA
10883 T-ATATTATTA
1 TAATA-TATTA
10893 ATATATATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 5 0.15
28 8 0.24
29 20 0.61
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (28 bp):
TAATATATTATAATTTACAATAGTAATA
Found at i:10908 original size:14 final size:14
Alignment explanation
Indices: 10878--10916 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
10868 TTTATAATAG
10878 TAATATATATT-AT
1 TAATATATATTAAT
10891 TAATATATATTAAT
1 TAATATATATTAAT
10905 TAATATATATTA
1 TAATATATATTA
10917 TAAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATATATATTAAT
Found at i:11933 original size:25 final size:26
Alignment explanation
Indices: 11884--11941 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
11874 TGATATTAAA
*
11884 TTATAATTTAATTTGTTAATAAATT-
1 TTATAAATTAATTTGTTAATAAATTG
11909 TTATAAATTAATATT-TCTAAT-AATTG
1 TTATAAATTAAT-TTGT-TAATAAATTG
11935 TT-TAAAT
1 TTATAAAT
11942 ATAACTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (26 bp):
TTATAAATTAATTTGTTAATAAATTG
Found at i:12287 original size:21 final size:21
Alignment explanation
Indices: 12263--12310 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
12253 ATTAATGATT
*
12263 ATAATCTATTCATA-TTTAACA
1 ATAATATATT-ATATTTTAACA
*
12284 ATAAATATATTATATTTTAATA
1 AT-AATATATTATATTTTAACA
12306 ATAAT
1 ATAAT
12311 TATAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAATATATTATATTTTAACA
Found at i:12294 original size:22 final size:22
Alignment explanation
Indices: 12269--12314 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
12259 GATTATAATC
12269 TATTCATA-TTTAACAATAAATA
1 TATT-ATATTTTAACAATAAATA
* *
12291 TATTATATTTTAATAATAATTA
1 TATTATATTTTAACAATAAATA
12313 TA
1 TA
12315 ATAAATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATATTTTAACAATAAATA
Found at i:12332 original size:18 final size:19
Alignment explanation
Indices: 12309--12352 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
12299 TTTAATAATA
* *
12309 ATTATAATAAATT-GTATT
1 ATTATAATAAATTAATACT
12327 ATTAT-ATAAATTAATACT
1 ATTATAATAAATTAATACT
12345 ATTATAAT
1 ATTATAAT
12353 TATAGTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 13 0.59
19 2 0.09
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTATAATAAATTAATACT
Found at i:15109 original size:38 final size:38
Alignment explanation
Indices: 15067--15143 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
15057 TAAACAATGC
* *
15067 ATGGCAAAACTCCCCCTCAATTTGTACATCCTAATCCA
1 ATGGCAAAACTCCCCATCAATTTATACATCCTAATCCA
*
15105 ATGGCAAAACTCCCCATCAATTTATGCATCCTAATCCA
1 ATGGCAAAACTCCCCATCAATTTATACATCCTAATCCA
15143 A
1 A
15144 CATAACTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.32, G:0.08, T:0.26
Consensus pattern (38 bp):
ATGGCAAAACTCCCCATCAATTTATACATCCTAATCCA
Found at i:17568 original size:24 final size:21
Alignment explanation
Indices: 17513--17581 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
17503 ACTAAATAAC
*
17513 TATT-AATATTATTAATAAAT
1 TATTCAATATAATTAATAAAT
17533 TATTC-ATAATAATTAATATTAAT
1 TATTCAAT-ATAATTAATA--AAT
17556 TATATCAATATAAGTT-ATAAAT
1 TAT-TCAATATAA-TTAATAAAT
17578 TATT
1 TATT
17582 ACTATTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 13
0.75 0.02 0.24
Matches are distributed among these distances:
20 6 0.15
21 10 0.24
22 6 0.15
23 6 0.15
24 9 0.22
25 4 0.10
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (21 bp):
TATTCAATATAATTAATAAAT
Found at i:17698 original size:12 final size:12
Alignment explanation
Indices: 17615--17706 Score: 57
Period size: 12 Copynumber: 7.4 Consensus size: 12
17605 TGACCTTAAC
17615 TATTAA-TATATA
1 TATTAATTATA-A
*
17627 TTTTAATATATAAA
1 TATTAAT-TAT-AA
17641 TTATTAAATTATAA
1 -TATT-AATTATAA
* *
17655 CTATTAATAATAG
1 -TATTAATTATAA
*
17668 T-TCTAA-TATTA
1 TAT-TAATTATAA
17679 TA-TAATTATAA
1 TATTAATTATAA
17690 TATTAATTATAA
1 TATTAATTATAA
17702 TATTA
1 TATTA
17707 CAATATGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
10 3 0.05
11 10 0.16
12 23 0.37
13 6 0.10
14 10 0.16
15 7 0.11
16 3 0.05
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (12 bp):
TATTAATTATAA
Found at i:17700 original size:20 final size:20
Alignment explanation
Indices: 17675--17782 Score: 54
Period size: 20 Copynumber: 5.7 Consensus size: 20
17665 TAGTTCTAAT
17675 ATTATATAATTATAATATTA
1 ATTATATAATTATAATATTA
* *
17695 ATTATA-ATATTACAATATGA
1 ATTATATA-ATTATAATATTA
* ** *
17715 AATATAATAACAATTATATTA
1 ATTAT-ATAATTATAATATTA
*
17736 A-AAT-TAATTA-AATATTA
1 ATTATATAATTATAATATTA
17753 ATT-T-T-A-T-TAATATTAAA
1 ATTATATAATTATAATATT--A
17770 ATTATATAATTAT
1 ATTATATAATTAT
17783 TAGAGTAAAT
Statistics
Matches: 63, Mismatches: 13, Indels: 22
0.64 0.13 0.22
Matches are distributed among these distances:
15 7 0.11
16 1 0.02
17 13 0.21
18 5 0.08
19 2 0.03
20 23 0.37
21 10 0.16
22 2 0.03
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (20 bp):
ATTATATAATTATAATATTA
Found at i:17706 original size:8 final size:8
Alignment explanation
Indices: 17624--17694 Score: 51
Period size: 8 Copynumber: 8.8 Consensus size: 8
17614 CTATTAATAT
*
17624 ATATTTTA
1 ATATTATA
17632 ATA-TATA
1 ATATTATA
17639 A-ATTATTA
1 ATATTA-TA
17647 A-ATTATA
1 ATATTATA
17654 ACTATTAATA
1 A-TATT-ATA
*
17664 ATAGTTCTA
1 ATA-TTATA
17673 ATATTAT-
1 ATATTATA
17680 ATAATTATA
1 AT-ATTATA
17689 ATATTA
1 ATATTA
17695 ATTATAATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
6 1 0.02
7 11 0.21
8 22 0.42
9 12 0.23
10 6 0.12
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (8 bp):
ATATTATA
Found at i:17783 original size:17 final size:16
Alignment explanation
Indices: 17730--17784 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
17720 AATAACAATT
17730 ATATTAAAATTA-ATTAA
1 ATATTAAAATTATA-T-A
**
17747 ATATTAATTTTAT-TA
1 ATATTAAAATTATATA
17762 ATATTAAAATTATATA
1 ATATTAAAATTATATA
17778 ATTATTA
1 A-TATTA
17785 GAGTAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 12 0.39
16 4 0.13
17 15 0.48
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAAAATTATATA
Found at i:18019 original size:22 final size:23
Alignment explanation
Indices: 17971--18029 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
17961 CCAAAATAAA
* *
17971 ATAACAAT-TTTATTATAATATT
1 ATAATAATATTTATTATAATAGT
17993 ATAAT-ATATTTATTATAAT-GT
1 ATAATAATATTTATTATAATAGT
18014 ACTAATAAATATTTAT
1 A-TAAT-AATATTTAT
18030 ACTTATGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 4 0.13
22 19 0.61
24 8 0.26
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (23 bp):
ATAATAATATTTATTATAATAGT
Found at i:19193 original size:20 final size:20
Alignment explanation
Indices: 19165--19291 Score: 64
Period size: 20 Copynumber: 6.2 Consensus size: 20
19155 ATTTATTTAC
*
19165 ATTACTTATTAATAATAAAT
1 ATTAATTATTAATAATAAAT
* *
19185 ATTAATTATTTATTATAAAT
1 ATTAATTATTAATAATAAAT
* *
19205 TTTAA-T-TT-ATCATAAAT
1 ATTAATTATTAATAATAAAT
* * *
19222 ATTAATAATTACT-ATTAAT
1 ATTAATTATTAATAATAAAT
*
19241 ATTTAATTCAATTAATATTTATTAAACA
1 A-TTAATT--ATTAATA---A-TAAA-T
*
19269 ATTAATTATTAATTATAAAT
1 ATTAATTATTAATAATAAAT
19289 ATT
1 ATT
19292 GAACATTTAA
Statistics
Matches: 80, Mismatches: 15, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
17 12 0.15
18 2 0.03
19 9 0.11
20 30 0.38
21 4 0.05
22 6 0.08
25 6 0.08
26 1 0.01
27 9 0.11
28 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAATTATTAATAATAAAT
Found at i:19214 original size:17 final size:17
Alignment explanation
Indices: 19192--19227 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
19182 AATATTAATT
* *
19192 ATTTATTATAAATTTTA
1 ATTTATCATAAATATTA
19209 ATTTATCATAAATATTA
1 ATTTATCATAAATATTA
19226 AT
1 AT
19228 AATTACTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATCATAAATATTA
Found at i:19410 original size:10 final size:10
Alignment explanation
Indices: 19387--19471 Score: 61
Period size: 10 Copynumber: 8.1 Consensus size: 10
19377 CCCTTTTATT
19387 TTAATAATTTA
1 TTAATAA-TTA
*
19398 TTAATAGTTA
1 TTAATAATTA
19408 TTAATAATTA
1 TTAATAATTA
19418 TT-ATCAGA-TA
1 TTAAT-A-ATTA
19428 -TAATAATTAA
1 TTAATAATT-A
19438 TTAATTAATTA
1 TTAA-TAATTA
19449 -TAATTAAATATA
1 TTAA-T-AAT-TA
19461 TTAATAATTA
1 TTAATAATTA
19471 T
1 T
19472 AACCTAATTA
Statistics
Matches: 62, Mismatches: 2, Indels: 21
0.73 0.02 0.25
Matches are distributed among these distances:
8 1 0.02
9 5 0.08
10 28 0.45
11 17 0.27
12 8 0.13
13 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (10 bp):
TTAATAATTA
Found at i:21086 original size:12 final size:13
Alignment explanation
Indices: 21061--21090 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
21051 ATTGTATATA
21061 ATTTATTATAAAT
1 ATTTATTATAAAT
21074 ATTTATTAT-AAT
1 ATTTATTATAAAT
21086 ATTTA
1 ATTTA
21091 AAACTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTTATTATAAAT
Found at i:21609 original size:180 final size:180
Alignment explanation
Indices: 21204--21805 Score: 600
Period size: 180 Copynumber: 3.4 Consensus size: 180
21194 GAATAGTTCG
* *
21204 ACTATTTGAACAATTATTTATTTCAAATAGTTATAATCTTTTATTTTGTGATAAACCAATTGTTT
1 ACTATTTGAACAATTATTTATTTCAAATAGTTATGATCTTTTGTTTTGTGATAAACCAATTGTTT
* * **
21269 CTGTCCATACAAGCATATTCTGAATAAAATAAT-TAAATTTATTAATATTCCAA-AATTTAATAA
66 CTGTCTATACAAGCTTATTCAAAATAAAATAATCT-AATTTATTAATATTCCAACAA-TTAATAA
* ** * *
21332 GTAAAA-ATTTAAAATA-AAATTAT-TTT-TTGAACATGTTCAAATAGATCTA
129 GTAAAAGATTTAAAAAATAAATT-TGTTTACCGAACATGCTCAAATAGATATA
* * * *
21381 ACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTGATGAACCAATTGTTT
1 ACTATTTGAACAATTATTTATTTCAAATAGTTATGATCTTTTGTTTTGTGATAAACCAATTGTTT
* *
21446 CTGTCTATATAAGCTTATTCAAAATAAAATAATACTAATTTAATAATATTCCAACAATTAATAAG
66 CTGTCTATACAAGCTTATTCAAAATAAAATAAT-CTAATTTATTAATATTCCAACAATTAATAAG
*
21511 TAAAAGATTTAAAAAATAAATTTGTTTACCGAGA-A-GCTCAAATAGTTATA
130 TAAAAGATTTAAAAAATAAATTTGTTTACCGA-ACATGCTCAAATAGATATA
* * * * **
21561 ACTGTTTGAACAATTTTTTATTTCTAATAGTTATGATCTTTTGTTTTGTCATAAAATAATTGTTT
1 ACTATTTGAACAATTATTTATTTCAAATAGTTATGATCTTTTGTTTTGTGATAAACCAATTGTTT
* * * ** *
21626 CTAT-TCATACAAGTTTATTCAAAATAAAATAATGCTATTTTATTAATATT-TTACGACTTAATA
66 CTGTCT-ATACAAGCTTATTCAAAATAAAATAAT-CTAATTTATTAATATTCCAAC-AATTAATA
* ** * * * * *
21689 GGTAGGAGATTT-AAAAATAAATCTGTTTACCAAACAAGTTCAAATAG-TCATG
128 AGTAAAAGATTTAAAAAATAAATTTGTTTACCGAACATGCTCAAATAGAT-ATA
* * * * * * * * *
21741 TCCATTAGAATAATTATCTATTTCAAATTGTTGTGA-CATTTTGTTTTGTCATAAAACAATTGTT
1 ACTATTTGAACAATTATTTATTTCAAATAGTTATGATC-TTTTGTTTTGTGATAAACCAATTGTT
21805 T
65 T
21806 TATAATAAAT
Statistics
Matches: 356, Mismatches: 55, Indels: 25
0.82 0.13 0.06
Matches are distributed among these distances:
177 87 0.24
178 31 0.09
179 38 0.11
180 196 0.55
181 3 0.01
182 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (180 bp):
ACTATTTGAACAATTATTTATTTCAAATAGTTATGATCTTTTGTTTTGTGATAAACCAATTGTTT
CTGTCTATACAAGCTTATTCAAAATAAAATAATCTAATTTATTAATATTCCAACAATTAATAAGT
AAAAGATTTAAAAAATAAATTTGTTTACCGAACATGCTCAAATAGATATA
Found at i:22285 original size:21 final size:21
Alignment explanation
Indices: 22247--22286 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22237 TTAATAATTT
*
22247 ATTAATTATTATTCTTAATAG
1 ATTAATTATTATTATTAATAG
22268 ATTAATT-TTATTAATTAAT
1 ATTAATTATTATT-ATTAAT
22287 CTAATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
ATTAATTATTATTATTAATAG
Found at i:22475 original size:13 final size:13
Alignment explanation
Indices: 22457--22481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22447 TGAATATTCA
22457 ATATTTAATTATT
1 ATATTTAATTATT
22470 ATATTTAATTAT
1 ATATTTAATTAT
22482 CTTAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATATTTAATTATT
Found at i:22487 original size:22 final size:22
Alignment explanation
Indices: 22461--22514 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
22451 TATTCAATAT
*
22461 TTAATTATT-ATATTTAATTATC
1 TTAATTATTAATATTAAATT-TC
22483 TTAA-TATTAATATTAAATTTC
1 TTAATTATTAATATTAAATTTC
22504 TACTAATTATT
1 T--TAATTATT
22515 TAAAGATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 7 0.26
22 13 0.48
23 3 0.11
24 4 0.15
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATTAATATTAAATTTC
Found at i:22996 original size:11 final size:11
Alignment explanation
Indices: 22980--23021 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
22970 TAACTCTATA
*
22980 ATATTATAATT
1 ATATTATTATT
22991 ATATTATTATT
1 ATATTATTATT
*
23002 -TATTTTTATT
1 ATATTATTATT
23012 A-ATTATTATT
1 ATATTATTATT
23022 TAGTTATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATATTATTATT
Found at i:23010 original size:10 final size:10
Alignment explanation
Indices: 22981--23028 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
22971 AACTCTATAA
*
22981 TATTATAATT
1 TATTATTATT
22991 ATATTATTATT
1 -TATTATTATT
*
23002 TATTTTTATT
1 TATTATTATT
*
23012 AATTATTATT
1 TATTATTATT
23022 TAGTTAT
1 TA-TTAT
23029 AATATTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
10 18 0.58
11 13 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
TATTATTATT
Found at i:23088 original size:11 final size:11
Alignment explanation
Indices: 23050--23098 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
23040 TGTTAATAAC
23050 AATTATAGTATT
1 AATTATA-TATT
* * *
23062 AAATATTTAAT
1 AATTATATATT
23073 AATTATATATT
1 AATTATATATT
23084 AATTATATATAT
1 AATTATATAT-T
23096 AAT
1 AAT
23099 AATTGTTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
11 21 0.70
12 9 0.30
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (11 bp):
AATTATATATT
Found at i:23088 original size:26 final size:26
Alignment explanation
Indices: 23025--23108 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
23015 TATTATTTAG
* **
23025 TTATAATATTAAATATGTTAATAACAA
1 TTATAGTATTAAATAT-TTAATAATTA
23052 TTATAGTATTAAATATTTAATAATTA
1 TTATAGTATTAAATATTTAATAATTA
* * * *
23078 -TATATTAATTATATATATAATAATTG
1 TTATAGT-ATTAAATATTTAATAATTA
23104 TTATA
1 TTATA
23109 TTGTTCTATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
25 5 0.10
26 24 0.50
27 19 0.40
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.48
Consensus pattern (26 bp):
TTATAGTATTAAATATTTAATAATTA
Found at i:23168 original size:30 final size:28
Alignment explanation
Indices: 23115--23199 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 28
23105 TATATTGTTC
*
23115 TATAATAATTATTA-TATATAAATATAGTAT
1 TATAATAA-TATTATTTTATAAATAT--TAT
*
23145 TATAATAATATTATTTTACAAATATTAT
1 TATAATAATATTATTTTATAAATATTAT
*
23173 T-TAATATTTATATATTTTATAAATATT
1 TATAATA-ATAT-TATTTTATAAATATT
23200 TATAATTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
27 5 0.10
28 7 0.15
29 19 0.40
30 17 0.35
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (28 bp):
TATAATAATATTATTTTATAAATATTAT
Found at i:23207 original size:18 final size:19
Alignment explanation
Indices: 23175--23213 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23165 AATATTATTT
*
23175 AATATTTATATATTTTATA
1 AATATTTATATATTTAATA
23194 AATATTTATA-ATTTAATA
1 AATATTTATATATTTAATA
23212 AA
1 AA
23214 CAATAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATATTTATATATTTAATA
Found at i:23394 original size:22 final size:23
Alignment explanation
Indices: 23317--23385 Score: 83
Period size: 21 Copynumber: 3.2 Consensus size: 23
23307 TAACAATTAT
*
23317 TAATAATAACTATAA-ATTAAT-
1 TAATAATAAATATAATATTAATA
* *
23338 TATTAAT-AATATAAT-TTATTA
1 TAATAATAAATATAATATTAATA
23359 TAATAATAAATATAATATTAATA
1 TAATAATAAATATAATATTAATA
23382 TAAT
1 TAAT
23386 TTAATTATAG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 10 0.26
21 12 0.31
22 8 0.21
23 9 0.23
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATAATAAATATAATATTAATA
Found at i:23503 original size:14 final size:12
Alignment explanation
Indices: 23477--23527 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 12
23467 TTATATAATA
23477 AATTAATATTATT
1 AATTAAT-TTATT
23490 AATATAATTATATT
1 AAT-TAATT-TATT
23504 AATTAATTTATT
1 AATTAATTTATT
*
23516 GA-TAA-TTATT
1 AATTAATTTATT
23526 AA
1 AA
23528 GTATATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
10 6 0.18
11 3 0.09
12 5 0.15
13 9 0.26
14 11 0.32
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
AATTAATTTATT
Found at i:23526 original size:18 final size:17
Alignment explanation
Indices: 23462--23532 Score: 58
Period size: 18 Copynumber: 4.0 Consensus size: 17
23452 TAATTTTTAT
23462 ATTA-ATTATATAATA-A
1 ATTATATTAT-TAATATA
23478 ATTAATATTATTAATATA
1 ATT-ATATTATTAATATA
*
23496 ATTATATTAATTAAT-TT
1 ATTATATT-ATTAATATA
23513 ATTGATAATTATTAAGTATA
1 ATT-AT-ATTATTAA-TATA
23533 TTAATTGTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
16 3 0.07
17 15 0.33
18 22 0.49
19 4 0.09
20 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
ATTATATTATTAATATA
Found at i:23588 original size:25 final size:25
Alignment explanation
Indices: 23544--23606 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
23534 TAATTGTATA
*
23544 ATTTAAATATTAGTTATTTA-ATAA-T
1 ATTT-AATATTAATTATTTATA-AATT
*
23569 ATATTAATATTAATTTTTTATAAATT
1 AT-TTAATATTAATTATTTATAAATT
23595 ATTTAATATTAA
1 ATTTAATATTAA
23607 ATTAAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 27 0.82
26 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
ATTTAATATTAATTATTTATAAATT
Found at i:24405 original size:14 final size:14
Alignment explanation
Indices: 24355--24405 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
24345 TAAATAGGTA
24355 TAATTATAATTATAT
1 TAATT-TAATTATAT
* *
24370 CAATATAATTATAAT
1 TAATTTAATTAT-AT
24385 TAA-TTAATTATAT
1 TAATTTAATTATAT
24398 TAATTTAA
1 TAATTTAA
24406 GTTAATAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
13 5 0.17
14 18 0.60
15 7 0.23
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATTTAATTATAT
Found at i:24414 original size:30 final size:27
Alignment explanation
Indices: 24353--24417 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
24343 TTTAAATAGG
24353 TATAATT-ATAATTATATCAATATAAT
1 TATAATTAATAATTATATCAATATAAT
* *
24379 TATAATTAATTAATTATATTAATTTAAGT
1 TATAATTAA-TAATTATATCAATATAA-T
24408 TAATAATTAA
1 T-ATAATTAA
24418 ATCTGTTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 7 0.21
27 1 0.03
28 15 0.45
29 2 0.06
30 8 0.24
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
TATAATTAATAATTATATCAATATAAT
Found at i:25518 original size:11 final size:11
Alignment explanation
Indices: 25511--25562 Score: 61
Period size: 11 Copynumber: 4.6 Consensus size: 11
25501 GTTATAATAT
25511 ATAAATAATTA
1 ATAAATAATTA
25522 ATAAAT-ATTAA
1 ATAAATAATT-A
*
25533 ATATAATTATTA
1 ATA-AATAATTA
*
25545 ATATATAATTA
1 ATAAATAATTA
25556 ATAAATA
1 ATAAATA
25563 GTAAATAGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
10 3 0.09
11 22 0.63
12 7 0.20
13 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
ATAAATAATTA
Found at i:25803 original size:24 final size:24
Alignment explanation
Indices: 25776--25821 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
25766 TATGACATTA
*
25776 TAATTATAAAATATAAT-TATTAAC
1 TAATT-TAAAATAAAATATATTAAC
25800 TAATTTAAAATAAAATATATTA
1 TAATTTAAAATAAAATATATTA
25822 CATATTTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TAATTTAAAATAAAATATATTAAC
Found at i:25907 original size:25 final size:25
Alignment explanation
Indices: 25844--25907 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 25
25834 AATAATTTGT
*
25844 TATT-TATAATTATATTATAATAATA
1 TATTATATAA-TATATCATAATAATA
*
25869 TATTAATTAAAATATATCATAACT-ATA
1 TATT-A-TATAATATATCATAA-TAATA
25896 TATTATATAATA
1 TATTATATAATA
25908 ATTTTTTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 10 0.31
26 1 0.03
27 16 0.50
28 5 0.16
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (25 bp):
TATTATATAATATATCATAATAATA
Found at i:25956 original size:27 final size:29
Alignment explanation
Indices: 25925--25988 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
25915 TAGCTCTTAC
25925 TAATAAACATATAAT-AATT-AG-AT-TAAT
1 TAATAAA-AT-TAATCAATTAAGAATATAAT
25952 TAATAAAATTAATCAATTAAGAATAATAAT
1 TAATAAAATTAATCAATTAAGAAT-ATAAT
25982 TAATAAA
1 TAATAAA
25989 TTATTAATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
25 4 0.12
26 6 0.19
27 9 0.28
28 2 0.06
30 11 0.34
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (29 bp):
TAATAAAATTAATCAATTAAGAATATAAT
Found at i:25971 original size:21 final size:22
Alignment explanation
Indices: 25946--25997 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
25936 TAATAATTAG
*
25946 ATTAATTAATAA-AATTAATCA
1 ATTAATTAATAATAATTAATAA
*
25967 ATTAA-GAATAATAATTAATAA
1 ATTAATTAATAATAATTAATAA
25988 ATT-ATTAATA
1 ATTAATTAATA
25998 GATTGGATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTAATTAATAATAATTAATAA
Found at i:26210 original size:27 final size:27
Alignment explanation
Indices: 26180--26238 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
26170 AATTTTAATA
*
26180 TTATTAATTAT-TTGGATAAATTAAAGG
1 TTATTAA-TATCTTGAATAAATTAAAGG
*
26207 TTATTAATATCTTTAATAAATTAAAGG
1 TTATTAATATCTTGAATAAATTAAAGG
26234 -TATTA
1 TTATTA
26239 TCTTAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (27 bp):
TTATTAATATCTTGAATAAATTAAAGG
Found at i:26312 original size:13 final size:13
Alignment explanation
Indices: 26294--26318 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26284 TAATAATAAT
26294 AATAATATTTATC
1 AATAATATTTATC
26307 AATAATATTTAT
1 AATAATATTTAT
26319 TTTAATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
AATAATATTTATC
Found at i:26906 original size:22 final size:24
Alignment explanation
Indices: 26866--26909 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
26856 TATAATACCA
26866 TTTTATTATAACAAATTATATAAT
1 TTTTATTATAACAAATTATATAAT
26890 TTTTATT-TAA-AAATTATATA
1 TTTTATTATAACAAATTATATA
26910 TTAAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 3 0.15
24 7 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTATTATAACAAATTATATAAT
Found at i:26928 original size:15 final size:15
Alignment explanation
Indices: 26893--26937 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
26883 ATATAATTTT
* *
26893 TATTTAAAAATTATA
1 TATTTAAATATAATA
26908 TA-TTAAATATAATA
1 TATTTAAATATAATA
*
26922 TATTTAATTATAATA
1 TATTTAAATATAATA
26937 T
1 T
26938 TATATAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATTTAAATATAATA
Found at i:27229 original size:21 final size:20
Alignment explanation
Indices: 27196--27239 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
27186 ATTTAATTAA
*
27196 TTATTCAAAATATTTAT-TT
1 TTATTCAAAATATTCATATT
27215 TTATATCAAATATATTCATATT
1 TTAT-TCAAA-ATATTCATATT
27237 TTA
1 TTA
27240 AATTATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 5 0.24
21 7 0.33
22 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATTCAAAATATTCATATT
Found at i:27277 original size:36 final size:36
Alignment explanation
Indices: 27237--27306 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
27227 TATTCATATT
* *
27237 TTAAATTATTAT-GTAATAATTACTATTATAATAATA
1 TTAAATAATTATAATAATAA-TACTATTATAATAATA
* *
27273 TTAAATAATTATAATTATAATACTATTATTATAA
1 TTAAATAATTATAATAATAATACTATTATAATAA
27307 AATAATATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 24 0.83
37 5 0.17
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (36 bp):
TTAAATAATTATAATAATAATACTATTATAATAATA
Found at i:27289 original size:25 final size:25
Alignment explanation
Indices: 27251--27300 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
27241 ATTATTATGT
27251 AATAATTACTATTATAATAATATTA
1 AATAATTACTATTATAATAATATTA
*
27276 AATAATTA-TAATTATAATACTATTA
1 AATAATTACT-ATTATAATAATATTA
27301 TTATAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (25 bp):
AATAATTACTATTATAATAATATTA
Found at i:27302 original size:28 final size:27
Alignment explanation
Indices: 27243--27303 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 27
27233 TATTTTAAAT
27243 TATTATGT-AATAATTACTATTATAATA
1 TATTAT-TAAATAATTACTATTATAATA
27270 -A-TATTAAATAATTA-TAATTATAATA
1 TATTATTAAATAATTACT-ATTATAATA
27295 CTATTATTA
1 -TATTATTA
27304 TAAAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
24 2 0.07
25 20 0.69
26 1 0.03
27 1 0.03
28 5 0.17
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (27 bp):
TATTATTAAATAATTACTATTATAATA
Found at i:27738 original size:30 final size:31
Alignment explanation
Indices: 27676--27740 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
27666 CTTTAATTAA
*
27676 TATTATATAATAGAATCTAATAAAAATAATT
1 TATTATATAATAGAAACTAATAAAAATAATT
**
27707 TATTA-ATAATAGAAACATAATTTAAAT-ATT
1 TATTATATAATAGAAAC-TAATAAAAATAATT
27737 TATT
1 TATT
27741 TTATTTATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (31 bp):
TATTATATAATAGAAACTAATAAAAATAATT
Found at i:28111 original size:22 final size:22
Alignment explanation
Indices: 28086--28135 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
28076 TTGTTATTAG
28086 TTAATA-TTAGTTAATTTA-TAAA
1 TTAATATTTA-TTAA-TTAGTAAA
*
28108 TTAACATTTATTAATTAGTAAA
1 TTAATATTTATTAATTAGTAAA
28130 TTAATA
1 TTAATA
28136 ATAAATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAATATTTATTAATTAGTAAA
Found at i:28455 original size:23 final size:23
Alignment explanation
Indices: 28410--28467 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
28400 AAATATTTAA
*
28410 TATAATTAATA-AATTATTTATT
1 TATAATTAATATAATTATTAATT
28432 TATAATTAAGTATAA-TATTAATT
1 TATAATTAA-TATAATTATTAATT
28455 TATAA-TAATATAA
1 TATAATTAATATAA
28468 ATTGTGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 5 0.15
22 12 0.36
23 14 0.42
24 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATAATTAATATAATTATTAATT
Found at i:28558 original size:27 final size:26
Alignment explanation
Indices: 28508--28570 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
28498 ATTGTATATT
* * *
28508 TTAATAAATTTATTACAATTAAATTAG
1 TTAATAATTTTATAACAATCAAA-TAG
*
28535 TTAATAATTTTATAATAATCAAATAG
1 TTAATAATTTTATAACAATCAAATAG
28561 TATAATAATT
1 T-TAATAATT
28571 AAATGTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (26 bp):
TTAATAATTTTATAACAATCAAATAG
Found at i:28566 original size:16 final size:15
Alignment explanation
Indices: 28545--28579 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
28535 TTAATAATTT
28545 TATAATAATCAAATAG
1 TATAATAATCAAAT-G
*
28561 TATAATAATTAAATG
1 TATAATAATCAAATG
28576 TATA
1 TATA
28580 TGTGAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (15 bp):
TATAATAATCAAATG
Found at i:29213 original size:22 final size:22
Alignment explanation
Indices: 29181--29223 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
29171 TATAAAAAAT
*
29181 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
29203 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
29224 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:29319 original size:16 final size:16
Alignment explanation
Indices: 29295--29341 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
29285 CCTTAATAAT
*
29295 TTAAAAAATTATTTAG
1 TTAATAAATTATTTAG
*
29311 TTAATAAATAATTTAG
1 TTAATAAATTATTTAG
29327 -TAATTAAATTATTTA
1 TTAA-TAAATTATTTA
29342 AATTATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 3 0.11
16 24 0.89
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (16 bp):
TTAATAAATTATTTAG
Found at i:29985 original size:13 final size:13
Alignment explanation
Indices: 29963--29992 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
29953 TTACGCATAT
*
29963 ATTTATTATATAG
1 ATTTAGTATATAG
29976 ATTTAGTATATAG
1 ATTTAGTATATAG
29989 ATTT
1 ATTT
29993 TTTATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
ATTTAGTATATAG
Found at i:30360 original size:18 final size:18
Alignment explanation
Indices: 30337--30487 Score: 53
Period size: 18 Copynumber: 8.1 Consensus size: 18
30327 ATTTGGCTAT
30337 TATAATTTAATATATTAA
1 TATAATTTAATATATTAA
30355 TATAATTTCAAT-T-TTAA
1 TATAATTT-AATATATTAA
* * *
30372 -ACTAATAGTCATATATTAG
1 TA-TAAT-TTAATATATTAA
* *
30391 T-TAATATTTATAATATTAT
1 TATAAT-TTAAT-ATATTAA
* *
30410 TACT-ATTTATTATAATAA
1 TA-TAATTTAATATATTAA
* *
30428 T-TAATTTATATAGTATCATG
1 TATAATTTA-ATA-TATTA-A
* *
30448 TAATAATTTAATAAATTAT
1 T-ATAATTTAATATATTAA
*
30467 TATAATTAAATATTATTAA
1 TATAATTTAATA-TATTAA
30486 TA
1 TA
30488 ATATTTTATG
Statistics
Matches: 97, Mismatches: 20, Indels: 31
0.66 0.14 0.21
Matches are distributed among these distances:
16 2 0.02
17 15 0.15
18 37 0.38
19 26 0.27
20 6 0.06
21 4 0.04
22 7 0.07
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
TATAATTTAATATATTAA
Found at i:30529 original size:13 final size:13
Alignment explanation
Indices: 30510--30542 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
30500 TTATATTAAT
30510 TATTATAATATGTA
1 TATTATAAT-TGTA
30524 -ATTATAATTGTA
1 TATTATAATTGTA
30536 TATTATA
1 TATTATA
30543 TATTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (13 bp):
TATTATAATTGTA
Found at i:30545 original size:25 final size:25
Alignment explanation
Indices: 30510--30569 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
30500 TTATATTAAT
* *
30510 TATTATAATATGTA-ATTATAATTGTA
1 TATTAT-ATAT-TATATAATAATTATA
*
30536 TATTATATATTATATAATAATTATT
1 TATTATATATTATATAATAATTATA
30561 TATTATATA
1 TATTATATA
30570 ATTTAATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 22 0.73
26 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
TATTATATATTATATAATAATTATA
Found at i:30564 original size:18 final size:18
Alignment explanation
Indices: 30537--30571 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
30527 ATAATTGTAT
30537 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
30555 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
30572 TTAATTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:31521 original size:19 final size:18
Alignment explanation
Indices: 31482--31554 Score: 62
Period size: 19 Copynumber: 4.1 Consensus size: 18
31472 TTAGAACAAT
* *
31482 TAATTATTACTATATATAA
1 TAATTA-TATTATATAAAA
31501 TAATTATATTATATAAGAA
1 TAATTATATTATATAA-AA
* *
31520 TAATAATTTTA-ATAAAA
1 TAATTATATTATATAAAA
31537 T-ATTATAATTAT-TAAAA
1 TAATTAT-ATTATATAAAA
31554 T
1 T
31555 TATCATTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
16 4 0.09
17 12 0.27
18 12 0.27
19 17 0.38
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (18 bp):
TAATTATATTATATAAAA
Found at i:32257 original size:161 final size:161
Alignment explanation
Indices: 31946--32258 Score: 377
Period size: 161 Copynumber: 1.9 Consensus size: 161
31936 AAACAAAGGA
* *
31946 TCATAATGATTTGAAATAAATAATTATTCTAACAATCATAACTATTTGAACTCACTCGATAAAAA
1 TCATAATGATTTGAAATAAATAATTATTCAAACAATCATAACTATTTCAACTCACTCGATAAAAA
** * *
32011 TATTTATTTTTTAAATATTTTACTTATTAATTTTGGAATATTAATTAATTAGAATTATTTTATTC
66 TATTTATTTCCTAAATATTATACTTATTAATTTTGGAATATTAATAAATTAGAATTATTTTATTC
* **
32076 CAAATAAGCTTGTTTGAATAGAAACAATTGG
131 AAAATAAGCTTGCATGAATAGAAACAATTGG
* * * * ***
32107 TCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTCAA-TGTGTTC-A-AAAA
1 TCATAATGATTTGAAATAAATAATTATTCAAACAATCATAACTATTTCAACT-CACTCGATAAAA
*
32169 ATAGCTTTATTTCCTAAA-ATTATACTTATTAATTTTTGGAATATTAATAAATTTA-TATTATTT
65 ATA--TTTATTTCCTAAATATTATACTTATTAA-TTTTGGAATATTAATAAA-TTAGAATTATTT
32232 TATTCAAAATACA-CTTGCATGAATAGA
126 TATTCAAAATA-AGCTTGCATGAATAGA
32259 TCCAATTGTT
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
159 7 0.05
160 15 0.12
161 103 0.80
162 4 0.03
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.42
Consensus pattern (161 bp):
TCATAATGATTTGAAATAAATAATTATTCAAACAATCATAACTATTTCAACTCACTCGATAAAAA
TATTTATTTCCTAAATATTATACTTATTAATTTTGGAATATTAATAAATTAGAATTATTTTATTC
AAAATAAGCTTGCATGAATAGAAACAATTGG
Found at i:32860 original size:14 final size:17
Alignment explanation
Indices: 32837--32876 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
32827 GAAGTATTTT
32837 TAATTAATAGT-TAT-TA
1 TAATT-ATAGTATATATA
32853 -AATTATAGTATATATA
1 TAATTATAGTATATATA
32869 TAATTATA
1 TAATTATA
32877 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.24
15 7 0.33
16 2 0.10
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
TAATTATAGTATATATA
Found at i:32945 original size:15 final size:16
Alignment explanation
Indices: 32918--32985 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 16
32908 AATTTATTTC
32918 AATTAGTTATTATAAT
1 AATTAGTTATTATAAT
*
32934 AATTAG-TATTATTAT
1 AATTAGTTATTATAAT
32949 AACTTA-TTA--ACTAAT
1 AA-TTAGTTATTA-TAAT
*
32964 AATTA-TTAATA-AAT
1 AATTAGTTATTATAAT
32978 AATT-GTTA
1 AATTAGTTA
32986 ATAGATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
14 17 0.39
15 15 0.34
16 12 0.27
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (16 bp):
AATTAGTTATTATAAT
Found at i:33057 original size:21 final size:23
Alignment explanation
Indices: 33025--33078 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 23
33015 ATATTAATCT
33025 AATTCATT-TTAAAT-TAATAA-A
1 AATT-ATTATTAAATATAATAATA
33046 AATTATTATTAAATATAATAATTA
1 AATTATTATTAAATATAATAA-TA
33070 AATTATTAT
1 AATTATTAT
33079 ATAATTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 3 0.10
21 10 0.34
22 6 0.21
24 10 0.34
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
AATTATTATTAAATATAATAATA
Found at i:33068 original size:19 final size:18
Alignment explanation
Indices: 33037--33089 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 18
33027 TTCATTTTAA
33037 ATTAATA-AA-AATTATT
1 ATTAATATAATAATTATT
*
33053 ATTAAATATAATAATTA-A
1 ATT-AATATAATAATTATT
*
33071 ATTATTAT-ATAATTATT
1 ATTAATATAATAATTATT
33088 AT
1 AT
33090 ATTTTGTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
16 10 0.33
17 10 0.33
18 5 0.17
19 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTAATATAATAATTATT
Found at i:33218 original size:15 final size:15
Alignment explanation
Indices: 33198--33263 Score: 55
Period size: 15 Copynumber: 4.3 Consensus size: 15
33188 CTTTATTAAC
33198 AATATATAAATAATT
1 AATATATAAATAATT
*
33213 AATATAGTAAATATTAT
1 AATATA-TAAATAAT-T
**
33230 AATAT-TATGTAA-T
1 AATATATAAATAATT
*
33243 GATAATATAAATAATT
1 AAT-ATATAAATAATT
33259 AATAT
1 AATAT
33264 TATTATTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
13 3 0.08
14 2 0.05
15 17 0.45
16 10 0.26
17 6 0.16
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (15 bp):
AATATATAAATAATT
Found at i:33374 original size:5 final size:5
Alignment explanation
Indices: 33364--33404 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
33354 ATTTGACATG
* * *
33364 TATAT TATAT TATAT TATAT TATAT TAAAA TATAA TATAT T
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT T
33405 TTAATTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (5 bp):
TATAT
Found at i:33384 original size:15 final size:15
Alignment explanation
Indices: 33364--33432 Score: 56
Period size: 15 Copynumber: 4.8 Consensus size: 15
33354 ATTTGACATG
* *
33364 TATATTATATTATAT
1 TATATTATATTAAAA
33379 TATATTATATTAAAA
1 TATATTATATTAAAA
* **
33394 TATAATATATTTTAA
1 TATATTATATTAAAA
33409 T-TA-TA-ATTAAAA
1 TATATTATATTAAAA
33421 TA-ATATATATTA
1 TATAT-TATATTA
33433 TTACTATAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
12 7 0.16
13 2 0.05
14 4 0.09
15 30 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATTATATTAAAA
Found at i:33440 original size:27 final size:27
Alignment explanation
Indices: 33369--33443 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
33359 ACATGTATAT
*
33369 TATATTATATTA-TATTAT-ATTAAAA
1 TATAATATATTATTATTATAATTAAAA
33394 TATAATATATT-TTAATTATAATTAAAA
1 TATAATATATTATT-ATTATAATTAAAA
*
33421 TA-ATATATATTATTACTATAATT
1 TATA-ATATATTATTATTATAATT
33444 GTTTTAATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 11 0.26
26 6 0.14
27 24 0.56
28 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (27 bp):
TATAATATATTATTATTATAATTAAAA
Found at i:33559 original size:19 final size:19
Alignment explanation
Indices: 33537--33609 Score: 69
Period size: 19 Copynumber: 3.8 Consensus size: 19
33527 ATATAATATG
* *
33537 TTATTAATTGTATTATTAA
1 TTATTAATTATATTATAAA
33556 TTA-TAATTATATTTATAAA
1 TTATTAATTATA-TTATAAA
* *
33575 CTATTAATTATATTATCAA
1 TTATTAATTATATTATAAA
*
33594 TAATT-ATTATTATTAT
1 TTATTAATTA-TATTAT
33610 TACTATAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
18 11 0.24
19 26 0.58
20 8 0.18
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (19 bp):
TTATTAATTATATTATAAA
Found at i:33796 original size:20 final size:19
Alignment explanation
Indices: 33737--33798 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 19
33727 ATATTAACAA
33737 TATTAAAATATAA-TATTT
1 TATTAAAATATAATTATTT
*
33755 TAATTTAATAATATTTATTTATATT
1 T-A-TTAA-AATA--TAATTAT-TT
33780 TATTAAAATATAATTATTT
1 TATTAAAATATAATTATTT
33799 ATAAACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 13
0.70 0.04 0.26
Matches are distributed among these distances:
18 1 0.03
19 3 0.09
20 10 0.29
21 4 0.11
22 4 0.11
23 6 0.17
24 4 0.11
25 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAAAATATAATTATTT
Found at i:33875 original size:12 final size:12
Alignment explanation
Indices: 33858--33882 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33848 TTATTATAGC
33858 TTATTTAAATTA
1 TTATTTAAATTA
33870 TTATTTAAATTA
1 TTATTTAAATTA
33882 T
1 T
33883 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATTTAAATTA
Found at i:34528 original size:181 final size:178
Alignment explanation
Indices: 33905--35036 Score: 640
Period size: 181 Copynumber: 6.3 Consensus size: 178
33895 CTTTAACATG
* * * * **
33905 ACTATTTGAACTTGTTTA-GTAAA-TAGATTCATTTTTTAAATCTCTTAATTATTAATTTTCAAA
1 ACTATTTGAAC-TGGTTAGGTAAACAAAATT-ATTTTTTAAATCTCTTACTTATTAATTTTTGAA
* * *** * * *
33968 ATATTAATAACTT-GATATTATTTTATTTCGAATAAGCTTATATGAATTGAAATAATTTTTTTAA
64 ATATTAATAAATTAG-TATTATTTTA-TTCGAATAAACTTATAT-AAACAAAATCATTGTTTTAT
* * * * ** * * * *
34032 GATAGAAGAAAAGGTCATAATGATTTGAAATAGATAACTATTCAAATAATCATT
126 GACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTGTTC-AATAGTCATA
* * * * * * * * * **
34086 ACTGTTTGATCTAGTTCA-GTAAACATATTTAATGTTTTACATTTTTTACTTATT-ATTTGTCAA
1 ACTATTTGAACTGGTT-AGGTAAACAAAATT-ATTTTTTAAATCTCTTACTTATTAATTT-TTGA
* * * * * * *
34149 AATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGA-ATAAATAGAAA-CTATTATCTT
63 AATATTAATAAATTAGTATTATTTTATTC-GAATAAACTT-ATATAAACA-AAATC-ATTGTTTT
* * * * ** * * *
34212 ATAACAGAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTTAAATAGTC-TT
124 ATGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTG-TTCAATAGTCATA
** * * * * * *
34267 A--ATTTGAACCAGTTTGATAAATAGATTTATTTTTTAAA-AT-TT--TTATTAATTTTTGAAAT
1 ACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAT
* *
34326 ATTAATAGATTAGTATTATTTTAGTTCGAACAAACTTATATAAACAAAATCATTAGTTTTATGAC
66 ATTAATAAATTAGTATTATTTTA-TTCGAATAAACTTATATAAACAAAATCATT-GTTTTATGAC
* * *
34391 AAAACAAAA-GTGCATAACAGTTTAAAATAGATAATTGTTCACATAGTCATA
129 AAAACAAAAGGT-TATAACAATTTGAAATAGATAATTGTTCA-ATAGTCATA
* *
34442 ATTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAAAT
1 ACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAT
* * * **
34507 -TGTAATAAATTTA-TTTTATTTTATTCTAAATAATC-TAGTATGAATTGAAAAT-ATTGTTTTA
66 AT-TAATAAA-TTAGTATTATTTTATTC-GAATAAACTTA-TAT-AA-ACAAAATCATTGTTTTA
* ** **
34568 TGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTAG-TCATATAGTTTTA
125 TGACAAAACAAAAGGTTATAACAATTTGAAATAGATAATT-GTTCA-ATAGTCATA
* * ** * * *
34623 ACTATTTGAACTAGTTCA-ATAAACAATTTTATTTTTT-AATCTTTTAGTTATTAA-TTTTCATA
1 ACTATTTGAACTGGTT-AGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGA-A
* * * * * * * * *
34685 ATATTATTAGATTAGTTTTTATTTTATTTCAAATAAGCTTGTATGAACATAAATAATTATTTTAT
64 ATATTAATAAATTAG-TATTATTTTA-TTCGAATAAACTTATATAAACA-AAATCATTGTTTTAT
* * * * * *
34750 GACAAAACAAAAAGTTATAACAATTTGAAGTATATAACTGCTCTAATAATCATA
126 GACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTGTTC-AATAGTCATA
* ** * * * *
34804 ACTATTTGAATTGGTTTTGTAAATAGATTTA-TTTTTAAATCTCTTACTTATTAATTTTTGAAAG
1 ACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAT
* * * * ** *
34868 ATTAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGATCAAAAACAATTGTCATATAAC
66 ATTAATAAATTAGTATTATTTTATT-CGAATAAACTTATATAAACAAAATC-ATTGTTTTATGAC
* * * * * *
34933 CAAACAAAAGGTAAGAACAATTTGAAATAGATAATTGTTGAAATGGCCATA
129 AAAACAAAAGGTTATAACAATTTGAAATAGATAATTGTT-CAATAGTCATA
* * * * * * *
34984 ATTATTTGAATTGATTTGGTAAAC-ATATTCACTTTTTAAATCACTTACTTATT
1 ACTATTTGAACTGGTTAGGTAAACAAAATT-ATTTTTTAAATCTCTTACTTATT
35037 TGAATTTGTT
Statistics
Matches: 743, Mismatches: 157, Indels: 102
0.74 0.16 0.10
Matches are distributed among these distances:
173 12 0.02
174 86 0.12
175 8 0.01
176 2 0.00
177 30 0.04
178 9 0.01
179 37 0.05
180 136 0.18
181 285 0.38
182 129 0.17
183 9 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (178 bp):
ACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAT
ATTAATAAATTAGTATTATTTTATTCGAATAAACTTATATAAACAAAATCATTGTTTTATGACAA
AACAAAAGGTTATAACAATTTGAAATAGATAATTGTTCAATAGTCATA
Found at i:34596 original size:355 final size:359
Alignment explanation
Indices: 33952--34893 Score: 840
Period size: 355 Copynumber: 2.6 Consensus size: 359
33942 AAATCTCTTA
* * * * * * *
33952 ATTATTAATTTTCAAAATATTAATA-ACTT-GATATTATTTTATTTCGAATAAGCTTATATGAA-
1 ATTATTAATTTTCATAATATTAATAGA-TTAGTTATTATTTTAGTTCAAACAAACTTATATAAAC
* * * * * * * ** * ** *
34014 TTGAAATAATTTTTTTAAGATAGAAGAAAAGGTCATAATGATTTGAAATAGATAACTATTCAAAT
65 AT-AAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTAAAATAGATAACTGCTCTAAT
* * * * * * * * *
34079 AATCATTACTGTTTGATCTAGTTCA-GTAAACATATTTAATGTTTTACATTTTTTACTTATT-AT
129 AATCATAACTATTTGAACTGGTT-AGGTAAACAAAATT-AT-TTTTAAATCTCTTACTTATTAAT
** * * * * *
34142 TTGTCAAAATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGAATAAATAGAAACTATT
191 TT-TTGAAAGATTAATAAATTTATATTATTTTATTCTAAATAAGCTAGAATAAATAGAAAATATT
* *
34207 ATCTTATAACAGAACAAAAAGTCATAATGATTTGAAATAAATAATT-GCTTAAATAGTCTT-A-A
255 ATCTTATAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTAG-TCAAATAGTCTTAACA
** *
34269 TTTGAACCAGTTTGATAAATAGA-TTTATTTTTTAA-AATTT
319 TTTGAACCAGTTCAATAAACA-ATTTTATTTTTTAATAATTT
* *
34309 -TTATTAATTTTTGA-AATATTAATAGATTAG-TATTATTTTAGTTCGAACAAACTTATATAAAC
1 ATTATTAA-TTTTCATAATATTAATAGATTAGTTATTATTTTAGTTCAAACAAACTTATATAAAC
* * * *
34371 A-AAATCATTAGTTTTATGACAAAAC-AAAAGTGCATAACAGTTTAAAATAGATAATTGTTC-AC
65 ATAAATAATTA-TTTTATGACAAAACAAAAAGT-CATAACAATTTAAAATAGATAACTGCTCTA-
* * *
34433 ATAGTCATAATTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAATTCTCTTACTTATTAAT
127 ATAATCATAACTATTTGAACTGGTTAGGTAAACAAAATTA-TTTTTAAATCTCTTACTTATTAAT
* * * * * *
34498 TTTTGAAA-TTGTAATAAATTTATTTTATTTTATTCTAAATAATCTAGTATGAATTGAAAATATT
191 TTTTGAAAGAT-TAATAAATTTATATTATTTTATTCTAAATAAGCTAGAATAAATAGAAAATATT
* * * * * * * * *
34562 GTTTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTAGTCATATAGTTTTAACTA
255 ATCTTATAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTAGTCAAATAGTCTTAAC-A
* **
34627 TTTGAACTAGTTCAATAAACAATTTTATTTTTTAATCTTTT
319 TTTGAACCAGTTCAATAAACAATTTTATTTTTTAATAATTT
* * * * * * *
34668 AGTTATTAATTTTCATAATATTATTAGATTAGTTTTTATTTTATTTCAAATAAGCTTGTATGAAC
1 A-TTATTAATTTTCATAATATTAATAGATTAGTTATTATTTTAGTTCAAACAAACTTATATAAAC
* * * *
34733 ATAAATAATTATTTTATGACAAAACAAAAAGTTATAACAATTTGAAGTATATAACTGCTCTAATA
65 ATAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTAAAATAGATAACTGCTCTAATA
* ** * * *
34798 ATCATAACTATTTGAATTGGTTTTGTAAATAGATTTATTTTTAAATCTCTTACTTATTAATTTTT
130 ATCATAACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTAAATCTCTTACTTATTAATTTTT
34863 GAAAGATTAATAAA-TTAGTATTATTTTATTC
195 GAAAGATTAATAAATTTA-TATTATTTTATTC
34894 CGAATAAACT
Statistics
Matches: 471, Mismatches: 88, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
354 1 0.00
355 126 0.27
356 114 0.24
357 8 0.02
358 30 0.06
359 3 0.01
360 8 0.02
361 72 0.15
362 94 0.20
363 15 0.03
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (359 bp):
ATTATTAATTTTCATAATATTAATAGATTAGTTATTATTTTAGTTCAAACAAACTTATATAAACA
TAAATAATTATTTTATGACAAAACAAAAAGTCATAACAATTTAAAATAGATAACTGCTCTAATAA
TCATAACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTAAATCTCTTACTTATTAATTTTTG
AAAGATTAATAAATTTATATTATTTTATTCTAAATAAGCTAGAATAAATAGAAAATATTATCTTA
TAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTAGTCAAATAGTCTTAACATTTGAAC
CAGTTCAATAAACAATTTTATTTTTTAATAATTT
Found at i:34992 original size:361 final size:361
Alignment explanation
Indices: 34309--34993 Score: 767
Period size: 361 Copynumber: 1.9 Consensus size: 361
34299 TTTAAAATTT
* *
34309 TTATTAATTTTTGAAATATTAATAGATTAGTATTATTTTAGTTCGAACAAACTTATATAAACAAA
1 TTATTAATTTTTCAAATATTAATAGATTAGTATTATTTTAGTTCAAACAAACTTATATAAACAAA
* * * * *
34374 ATCATTAGTTTTATGACAAAACAAAAGTGCATAACAGTTTAAAATAGATAATTGTTCACATAGTC
66 ATAATTAGTTTTATGACAAAACAAAAGTGCATAACAATTTAAAATAGATAACTGCTCACATAATC
* *
34439 ATAATTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAATTCTCTTACTTATTAATTTTTGA
131 ATAACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGA
* * * * ** * **
34504 AATTGTAATAAATTTATTTTATTTTATTCTAAATAATCTAGTATGAATTGAAAATATTGTTTTAT
196 AAATGTAATAAATTTATATTATTTTATTCCAAATAAACTAGTATGAATCAAAAAAATTGTCATAT
* * * * ** * ***
34569 GATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTAGTCATATAGTTTTAACTATTTGAAC
261 AACAAAACAAAAGGTAAGAACAATTTGAAATAGATAATTAGTCAAATAGCCATAACTATTTGAAC
34634 TAGTTCAATAAACAATTTTATTTTTTAATCTTTTAG
326 TAGTTCAATAAACAATTTTATTTTTTAATCTTTTAG
* * * * * * *
34670 TTATTAA-TTTTCATAATATTATTAGATTAGTTTTTATTTTATTTCAAATAAGCTTGTATGAACA
1 TTATTAATTTTTCA-AATATTAATAGATTAG-TATTATTTTAGTTCAAACAAACTTATATAAACA
* * * *
34734 TAAATAATTA-TTTTATGACAAAACAAAAAGT-TATAACAATTTGAAGTATATAACTGCTCTA-A
64 -AAATAATTAGTTTTATGACAAAAC-AAAAGTGCATAACAATTTAAAATAGATAACTGCTC-ACA
* ** * * *
34796 TAATCATAACTATTTGAATTGGTTTTGTAAATAGATTTA-TTTTTAAATCTCTTACTTATTAATT
126 TAATCATAACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATT
* *
34860 TTTGAAAGAT-TAATAAA-TTAGTATTATTTTATTCCGAATAAACTTGTATG-ATCAAAAACAAT
191 TTTGAAA-ATGTAATAAATTTA-TATTATTTTATTCCAAATAAACTAGTATGAATCAAAAA-AAT
* * * *
34922 TGTCATATAACCAAACAAAAGGTAAGAACAATTTGAAATAGATAATT-GTTGAAATGGCCATAAT
253 TGTCATATAACAAAACAAAAGGTAAGAACAATTTGAAATAGATAATTAG-TCAAATAGCCATAAC
34986 TATTTGAA
317 TATTTGAA
34994 TTGATTTGGT
Statistics
Matches: 264, Mismatches: 51, Indels: 18
0.79 0.15 0.05
Matches are distributed among these distances:
360 15 0.06
361 140 0.53
362 94 0.36
363 15 0.06
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (361 bp):
TTATTAATTTTTCAAATATTAATAGATTAGTATTATTTTAGTTCAAACAAACTTATATAAACAAA
ATAATTAGTTTTATGACAAAACAAAAGTGCATAACAATTTAAAATAGATAACTGCTCACATAATC
ATAACTATTTGAACTGGTTAGGTAAACAAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGA
AAATGTAATAAATTTATATTATTTTATTCCAAATAAACTAGTATGAATCAAAAAAATTGTCATAT
AACAAAACAAAAGGTAAGAACAATTTGAAATAGATAATTAGTCAAATAGCCATAACTATTTGAAC
TAGTTCAATAAACAATTTTATTTTTTAATCTTTTAG
Found at i:35065 original size:542 final size:537
Alignment explanation
Indices: 34008--35036 Score: 1159
Period size: 542 Copynumber: 1.9 Consensus size: 537
33998 AATAAGCTTA
* * * *
34008 TATGAATTGAAATAATTTTTTTAAGATAGAAGAAAAGGTCATAATGATTTGAAATAGATAACTAT
1 TATGAATTGAAATAATTGTTTTAAGATAAAACAAAAGGTCATAATGATTTGAAATAGATAACTAG
* * * *
34073 TCAAATAATCATTACTGTTTGATCTAGTTCAGTAAACATATTTAATGTTTTACATTTTTTACTTA
66 TCAAATAATCATTACTATTTGAACTAGTTCAATAAACATATTTAATGTTTTACATCTTTTACTTA
* *
34138 TTATTTGTCAAAATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGAATAAATAGAAAC
131 TTATTTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAATAAGCTTGAATAAACAGAAAC
* ** * * *
34203 TATTATCTTATAACAGAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTTAAATAGTCTTA
196 TATTATCTTATAACAAAACAAAAAGTCATAACAATTTGAAATAAATAACTGCTTAAATAATCTAA
*
34268 ATTTGAACCAGTTTGATAAATAGATTTATTTTTTAAAATTTTTATTAATTTTTGAAATATTAATA
261 ATTTGAACCAGTTTGATAAATAGATTTATTTTTTAAAATTTTTATTAATTTTTGAAAGATTAATA
* * ** *
34333 GATTAGTATTATTTTAGTTCGAACAAACTTATATAAACAAAATCATTAGTTTTATGACAAAACAA
326 AATTAGTATTATTTTAGTTCGAACAAACTTATATAAACAAAAACATTAGTCATATAACAAAACAA
* * * * * *
34398 AAGTGCATAACAGTTTAAAATAGATAATTGTTCACATAGTCATAATTATTTGAACTGGTTAGGTA
391 AAGTGAAGAACAATTTAAAATAGATAATTGTTCAAATAGCCATAATTATTTGAACTGATTAGGTA
* * * * *
34463 AACAAAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAAATTGTAATAAATTTATTTTATTT
456 AACAAAATTACTTTTTAAATCACTTACTTATTAATTTTTGAAATTGAAACAAATTTATTTTATTT
34528 TATTCTAAATAATCTAG
521 TATTCTAAATAATCTAG
* * *
34545 TATGAATTGAAA-ATATTGTTTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTA
1 TATGAATTGAAATA-ATTGTTTTAAGATAAAACAAAAGGTCATAATGATTTGAAATAGATAACTA
* * * * * *
34609 GTCATATAGT-TTTAACTATTTGAACTAGTTCAATAAACA-ATTTTATTTTTTA-ATCTTTTAGT
65 GTCAAATAATCATT-ACTATTTGAACTAGTTCAATAAACATATTTAATGTTTTACATCTTTTACT
* * * * * * *
34671 TATTAATTT-TCATAATATTATTAGATTAGTTTTTATTTT-ATTTCAAATAAGCTTGTATGAACA
129 TATT-ATTTGTCAAAATATTAATAAATTAG-TATTATTTTAATCT-AAATAAGCTTGAATAAACA
* * * * * *
34734 TAAA-TAATTATTTTATGACAAAACAAAAAGTTATAACAATTTGAAGTATATAACTGCTCT-AAT
191 GAAACT-ATTATCTTATAACAAAACAAAAAGTCATAACAATTTGAAATAAATAACTGCT-TAAAT
*** *
34797 AATCATAACTATTTGAATTGGTTTTG-TAAATAGATTTA-TTTTTAAATCTCTTACTTATTAATT
254 AATC-TAA--ATTTGAACCAG-TTTGATAAATAGATTTATTTTTTAAA-AT-TT--TTATTAATT
* * * *
34860 TTTGAAAGATTAATAAATTAGTATTATTTTA-TTCCGAATAAACTTGTATGATCAAAAACAATT-
311 TTTGAAAGATTAATAAATTAGTATTATTTTAGTT-CGAACAAACTTATATAAACAAAAAC-ATTA
* * * *
34923 GTCATATAACCAAACAAAAG-GTAAGAACAATTTGAAATAGATAATTGTTGAAATGGCCATAATT
374 GTCATATAACAAAACAAAAGTG-AAGAACAATTTAAAATAGATAATTGTTCAAATAGCCATAATT
* * *
34987 ATTTGAATTGATTTGGTAAAC-ATATTCACTTTTTAAATCACTTACTTATT
438 ATTTGAACTGATTAGGTAAACAAAATT-ACTTTTTAAATCACTTACTTATT
35037 TGAATTTGTT
Statistics
Matches: 405, Mismatches: 68, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
535 32 0.08
536 94 0.23
537 88 0.22
538 8 0.02
539 21 0.05
540 6 0.01
541 7 0.02
542 146 0.36
543 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (537 bp):
TATGAATTGAAATAATTGTTTTAAGATAAAACAAAAGGTCATAATGATTTGAAATAGATAACTAG
TCAAATAATCATTACTATTTGAACTAGTTCAATAAACATATTTAATGTTTTACATCTTTTACTTA
TTATTTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAATAAGCTTGAATAAACAGAAAC
TATTATCTTATAACAAAACAAAAAGTCATAACAATTTGAAATAAATAACTGCTTAAATAATCTAA
ATTTGAACCAGTTTGATAAATAGATTTATTTTTTAAAATTTTTATTAATTTTTGAAAGATTAATA
AATTAGTATTATTTTAGTTCGAACAAACTTATATAAACAAAAACATTAGTCATATAACAAAACAA
AAGTGAAGAACAATTTAAAATAGATAATTGTTCAAATAGCCATAATTATTTGAACTGATTAGGTA
AACAAAATTACTTTTTAAATCACTTACTTATTAATTTTTGAAATTGAAACAAATTTATTTTATTT
TATTCTAAATAATCTAG
Found at i:35424 original size:179 final size:181
Alignment explanation
Indices: 35239--35645 Score: 471
Period size: 181 Copynumber: 2.3 Consensus size: 181
35229 CAGTAAACAA
35239 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATC
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATC
** * * *
35304 CAAATAAGCTTGTACGAACA-AA-CAATTGTTTTACGTTAAAAGAAAAGG-TCATAACGATTTGA
66 CAAATAAAATAGTACGAACAGAACCAATTGTTTGACGATAAAAGAAAAGGCT-ATAACGATTTGA
* * ** * **
35366 AATAGATAATCATTCATAGAGTCTTAACTATTTGAATTGGTTCGACAATTAG
130 AATAAATAATCATTCAAAGAGTCAAAACTATTTGAAATGGTTCGACAAGCAG
* * ** * *
35418 ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTCAAAATATTATTAAATTAGTATTATTTTATTC
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATC
* * * * *
35483 TAAATAAAATAGTATGAATAGAACCAATTGTTTGATGATAAAATAAAAGGCTATAACGATTTGAA
66 CAAATAAAATAGTACGAACAGAACCAATTGTTTGACGATAAAAGAAAAGGCTATAACGATTTGAA
* * * * **
35548 ATAAATAATTATTGAAATAGTCAAAACTATTTGAAATGGTTTGGTAAGCAG
131 ATAAATAATCATTCAAAGAGTCAAAACTATTTGAAATGGTTCGACAAGCAG
** * * *
35599 ATTT-TTTTTTAAATCTCTTACAAATTTATTTTCTAAATATTAATAAA
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAA
35646 ACAATATTAT
Statistics
Matches: 186, Mismatches: 39, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
179 73 0.39
180 35 0.19
181 77 0.41
182 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATC
CAAATAAAATAGTACGAACAGAACCAATTGTTTGACGATAAAAGAAAAGGCTATAACGATTTGAA
ATAAATAATCATTCAAAGAGTCAAAACTATTTGAAATGGTTCGACAAGCAG
Found at i:36319 original size:11 final size:10
Alignment explanation
Indices: 36285--36334 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
36275 TTTATTAATA
36285 ATAATT-TAT
1 ATAATTATAT
*
36294 ATTAATTGTATT
1 A-TAATTATA-T
36306 ATAATTATTAT
1 ATAATTA-TAT
36317 ATAATTA-AT
1 ATAATTATAT
36326 ATAATTATA
1 ATAATTATA
36335 ATAGTATAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
9 10 0.29
10 6 0.17
11 15 0.43
12 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (10 bp):
ATAATTATAT
Found at i:36328 original size:20 final size:22
Alignment explanation
Indices: 36305--36355 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 22
36295 TTAATTGTAT
*
36305 TATAATTATTATA-TA-ATTAA
1 TATAATTATTATAGTATAGTAA
*
36325 TATAATTATAATAGTATAGTAA
1 TATAATTATTATAGTATAGTAA
36347 TA-AATTATT
1 TATAATTATT
36356 GTATTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 12 0.46
21 8 0.31
22 6 0.23
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TATAATTATTATAGTATAGTAA
Found at i:36765 original size:180 final size:178
Alignment explanation
Indices: 36504--38073 Score: 1157
Period size: 180 Copynumber: 8.8 Consensus size: 178
36494 GAAAACATAT
* * *
36504 AATCTCTTACTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTTATTCT-AATTAGGCTT
1 AATCTCTTACTTATTAATTTTTGAAA-ATTAATAAAGTAGTATTATTTTATTTTGAA-TAAGCTT
* * * *
36568 GTATG-ATGAACAACAATTGTTTTATGACAAAACAAAAGTTCAAAATGATTTGAAATAGATAATT
64 TTATGAATG-A-AACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATT
* * *
36632 GTTCAAATGGCCATAACTATTTGAACTGATTCAATAAA-ATGATTTATGTTTTA
127 ATTCAAATAGTCATAACTATTTGAACTG-TTCAATAAACATGATTTAT-TTTTA
** * * *
36685 AATCTCCAACTTCTTAATTTTTGAAAATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTT
1 AATCTCTTACTTATTAATTTTTGAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTTT
* * * *
36750 ATGAAATGAAACAATTGTTTTATGATAAAACAAAAGTTCATAACGATTTTAAA-ATGATAATTGT
66 ATG-AATGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATA-GATAATTAT
* * * *** *
36814 TTAAATAGTCATAACTATTTAAACTTATTTGGTAAACA-GATTTATTTTTT
129 TCAAATAGTCATAACTATTTGAAC-TGTTCAATAAACATGATTTATTTTTA
* ** * ** *
36864 AAT-TCCTTGCTTATTAATTTTCTGAATGTTAATAAAATAGTATTATTTTATTTCAAATAAGCAT
1 AATCT-CTTACTTATTAATTTT-TGAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTT
* * * * *
36928 GTATGAACT-AAACAATTATTTTATGACTAAATAAAAGGTCATAATGATTTGAAATAGATAATTA
64 TTATGAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTA
* * ** * *
36992 TT-ATAATAGTCTTAACTGTTTGAACTGGTTCAACGAATA-CA-TT-TTTTTA
128 TTCA-AATAGTCATAACTATTTGAACT-GTTCAATAAACATGATTTATTTTTA
* * *** * * **
37041 AATCTCTTACTTATTAATTTTTAGAATATTATTAGTTTAGTAATATTTTACTCCGAATAAG-TTT
1 AATCTCTTACTTATTAATTTTT-GAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTT
* * *
37105 GTATGGATAGAAACAATTG-TTTATGACAAAAC-AAAGATCAT-ACTGATTTGAGATAGATAATT
65 -TATGAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC-GATTTGAAATAGATAATT
* * *
37167 ATTCAAATAGTCATAACTATTTGAATTGGTCCTAATAAACA-GATATAGTTTTTA
127 ATTCAAATAGTCATAACTATTTGAACT-GTTC-AATAAACATGATTTA-TTTTTA
** * * *
37221 AA--TC-T-CTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTAAATAA-TTTT
1 AATCTCTTACTTATTAATTTTTGAAA-ATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTT
* *
37281 GTATGAATAGAAACAATTGTTTTATTACAAAAC-AAAGGATCATAACGATTTGAAAT-GAACAAT
65 -TATGAAT-GAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAATAG-ATAAT
* * * * ** *
37344 TATTTAAATAGTCATAATTATATAAACTCACTCAATAAACA-AATTTATTTTTTA
126 TATTCAAATAGTCATAACTATTTGAACT-GTTCAATAAACATGATTTA-TTTTTA
* * * * ** **
37398 AATATTTTACTTATT-ATTTTTGAAATTTTAATAAATTAGTATTATTTTATTTCAAATAAAATTT
1 AATCTCTTACTTATTAATTTTTGAAA-ATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTT
* * *
37462 TATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACAATTTGAAATACG-TAATTG
65 TATGAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATA-GATAATTA
* * * *
37526 TTCAAATGGTCATAATTATTTTAAACGTGTTCAA-AAA-ATAAATTTATTTTATA
128 TTCAAATAGTCATAACTA-TTTGAAC-TGTTCAATAAACAT-GATTTATTTT-TA
* * * * * * *
37579 TAT-TTTTATTTGTTAATCTTTGGAATATTAGTAAAGTTA-TATTATTTTA-TTTGAAATAAGCT
1 AATCTCTTACTTATTAAT-TTTTGAAAATTAATAAAG-TAGTATTATTTTATTTTG-AATAAGCT
* * * * *
37641 TGTATGAACAGAAACAATTATTTTATGGCAAAACAAAAGGTCATAACAATTTGAAATAGATAATT
63 TTTATGAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATT
* * ** * *
37706 GTTCAAATAGTCATAACTATGTGAACTTGTT-TGTAAATA-GATTCATTTTTGA
127 ATTCAAATAGTCATAACTATTTGAAC-TGTTCAATAAACATGATTTATTTTT-A
* * * * *
37758 AATCTCTTACTCATTAATTTTTGGAATAGTAAT-AAGTTAGTATTATTCTATTTTGAATAAGCCT
1 AATCTCTTACTTATTAATTTTT-GAAAATTAATAAAG-TAGTATTATTTTATTTTGAATAAGCTT
* * * * * * *
37822 ATATGAATTGATATAATTGTTTCATGGCAAAATAAAAGGTCATAACGATTTAAAATAGATAATTA
64 TTATGAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTA
* * **
37887 TTCAAATAGTTATTACTATTTGAACTTGTTCGGTAAACAT-ATTTATTTTTTA
128 TTCAAATAGTCATAACTATTTGAAC-TGTTCAATAAACATGATTTA-TTTTTA
* * * * * ***
37939 AATCTTTTACTTGTTAA---TTG-----T--TGAA--A-TATTATTTTAATTCGAATAAGCCAAT
1 AATCTCTTACTTATTAATTTTTGAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTTT
** * * *
37991 ATGAACAAAATTAATTGTTTTATGACAAAACAAAAGGTTATAACGATTTGAAATAAATAATTATT
66 ATGAATGAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATT
*
38056 CTAATAGTCATAACTATT
130 CAAATAGTCATAACTATT
38074 CAAAATTATT
Statistics
Matches: 1130, Mismatches: 199, Indels: 134
0.77 0.14 0.09
Matches are distributed among these distances:
166 2 0.00
167 90 0.08
168 1 0.00
170 1 0.00
171 2 0.00
172 1 0.00
175 3 0.00
176 112 0.10
177 114 0.10
178 61 0.05
179 117 0.10
180 418 0.37
181 190 0.17
182 18 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (178 bp):
AATCTCTTACTTATTAATTTTTGAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTTT
ATGAATGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTC
AAATAGTCATAACTATTTGAACTGTTCAATAAACATGATTTATTTTTA
Found at i:38421 original size:181 final size:181
Alignment explanation
Indices: 38099--38740 Score: 669
Period size: 181 Copynumber: 3.5 Consensus size: 181
38089 AACAGATTTG
* * * * *
38099 AAATAAGCTTGTATGAATAGAAAA-AATTATTTTATGACAATACAAAAGGTTATAACAATTTGAA
1 AAATAAGCTTATATGAACA-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAA
* * * * * *
38163 CTAGATAATTGTTCAAATAGCCATAATTATTTAAACTTGTTC-AGTAAACAGATTCATTTTTTAA
65 ATAGATAATTGATCAAATAGTCATAATTATTTGAAC-TGGTCAAGCAAACAGATTCATTTTTTAA
*
38227 ATCTCTCACTTATTAATTTTTAGAATATTAATAAATTAGA-ATTATGTTATTTTC
129 ATCTCTTACTTATTAATTTTTAGAATATTAATAAATTA-ACATTAT-TTATTTTC
* * * **
38281 -AATAAGCTTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAATGATTTGAAA
1 AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
* * * * * *
38345 TAGATAATTGAACAAATAGTCATAATTGTTTGCACTGGTCAAGCCAAA-GGATACATTTTCTAAA
66 TAGATAATTGATCAAATAGTCATAATTATTTGAACTGGTCAAG-CAAACAGATTCATTTTTTAAA
* * *
38409 TC-CATTACTTATTAATTTTCAAAATATTAATAAATTAACATTACTTTA-TTCC
130 TCTC-TTACTTATTAATTTTTAGAATATTAATAAATTAACATTA-TTTATTTTC
* * * * **
38461 AAATAAGATTATATGAACAGAAACAATTGTTTTATGATAAAACAAATGGTCATAATGATTTGAAA
1 AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
* * * * * * * *
38526 TAAATATTTGGTCAAATAGAT-ATAACTAATTGAACTAGT-ATGGCAAACAGATTTATTTTTTAA
66 TAGATAATTGATCAAATAG-TCATAATTATTTGAACTGGTCA-AGCAAACAGATTCATTTTTTAA
* *
38589 ATCTCTTACGTATTAATTTTT-GAAATATTAATAAATTAATATTATTT-TTTTCC
129 ATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAACATTATTTATTTT-C
* * * * *
38642 AAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAGGTAATAACAATTTAAAA
1 AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
38707 TAGATAATT-ATTCAAATAGTCATAATTATTTGAA
66 TAGATAATTGA-TCAAATAGTCATAATTATTTGAA
38741 ATAGTTTTGT
Statistics
Matches: 379, Mismatches: 65, Indels: 33
0.79 0.14 0.07
Matches are distributed among these distances:
180 24 0.06
181 349 0.92
182 6 0.02
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (181 bp):
AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
TAGATAATTGATCAAATAGTCATAATTATTTGAACTGGTCAAGCAAACAGATTCATTTTTTAAAT
CTCTTACTTATTAATTTTTAGAATATTAATAAATTAACATTATTTATTTTC
Found at i:38725 original size:16 final size:17
Alignment explanation
Indices: 38704--38736 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
38694 TAACAATTTA
38704 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
38720 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
38737 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:39174 original size:181 final size:181
Alignment explanation
Indices: 38761--40657 Score: 1219
Period size: 181 Copynumber: 10.6 Consensus size: 181
38751 AAACAAAATT
** * * * * * *
38761 ATTATGACTTTTTGTTTTGTAATAAAACAATTG-TGCTTGTTCATACAAGTTTATTCGAATTAAA
1 ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTC-TATTCATACAAGCTTATTTGAAATAAA
* *** *
38825 ATAATATTAATTTATTAATATTTTGACAATTAATAAGTGAA-AGATTTAAAAAATAAATATGTTT
65 ATAATACTAATTTATTAATATTCCAAAAATTAATAAGT-AAGAGATTTAAAAAATAAATATGTTT
* * * *
38889 ATCAAACAAGTTCAAATAGTCA-AGACTATTTGAA-TATTATCTATTTCAAATA-
129 ACCGAACAAGTTCAAATAGTTATA-ACTATTTGAACAATTATCTATTTCAAA-AC
* * * * * *
38941 ATTTTGACC-TTCTATTTTGTAATAAAATAATTGTTTC-AGTTAATATAAGCTTATTTGAAATAA
1 ATTATGACCATT-TGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTGAAATAA
* * * * * * *
39004 AATAGCT-CTAATTTATGAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATCTGT
64 AATA-ATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAG-ATTTAAAAAATAAATATGT
* * * *
39068 TTACCGAACAAGCTCAAATAGTTATAACTATCTAAATAATTATCTATTTCAAAAC
127 TTACCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAAC
* * *
39123 ATTATGACCATTTG-TTTGTCATAAAATAATTAGTTT-TGTTCATGCAAGCTTATTTTG-AATAA
1 ATTATGACCATTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTA-TTTGAAATAA
* * * *
39185 AATAATA-TAAATTTATTAAAACTCCAAAAATTAATAAATAA-AAATTTAAAAAATAAATATGTT
64 AATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTT
*** * * *
39248 TTTTGAACATA-ATC-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATC
128 TACCGAACA-AGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAAC
* * * * **
39301 GTTATGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCAAAATAAAA
1 ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAA
* * * * * * * *
39366 TAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGTTTTAAATAATATATTTGTTTAC
66 TAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTAC
* * * *
39431 CGAGCAAGTTCAAATAGTTATTACTATTTGAACAATTATATATTTCAAATC
131 CGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAAC
* * * * * * *
39482 TTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCACAAAAGTTTATTTGGAATAAAA
1 ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAA
* * * * * *
39547 TAATACTAGTTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTATTTAC
66 TAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTAC
* * * ** * * * *
39612 CAAACAAGTTTAAATAGTCATGTCCATTTGAACTATTATTTATTTCAAATC
131 CGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAAC
* * * * * ** *
39663 ATTATGA-TATTTTGTTTTATTATAAAATAATTGTTTTTATTCATACAAAATTA-TTCAGAATAA
1 ATTATGACCA-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGA-AATAA
* * *
39726 AATAATACTAATTTATTATTATTTCAAAAA-T--TAA-TAAG-GATTT-AAAAATAAATGTGTTT
64 AATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT
***** ** * * **
39785 TTTTTAGTAGTTCAAATAGTTA-AGACTATTAGAACAATTATCTATTCCAAATT
129 ACCGAACAAGTTCAAATAGTTATA-ACTATTTGAACAATTATCTATTTCAAAAC
* * * * * * * * *
39838 ATTTTGA-TATTTTGTTTAGTCAAAAAATAATTTTTTC-AGTTCATACATGCTTATTCGAAATAT
1 ATTATGACCA-TTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTGAAATAA
* ** ** * *
39901 AATAATACTAATTTATTAAAATTTAAAAAATTAATAA--AA-A-ATTT-TTAAA-AAATCTATTT
64 AATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT
* * * * *
39960 ATCGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTT-AAAATC
129 ACCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAA-C
* * * * * * * *
40013 ATTATGACCTTTTATTTTATCATAAAACAACTATTT-TAGTACATAAAAG-TT-TTCCTAAAATA
1 ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATT--TGAAATA
* ** * * ** *
40075 AAATAATATTGCTTTATTAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCA-GT
63 AAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-ATGT
* * ** * ** * *
40139 TTATCAAATTA-TTCAAATAATTAT-GGTCATTTGAATAATTATCTATTTCAAATC
127 TTACCGAACAAGTTCAAATAGTTATAACT-ATTTGAACAATTATCTATTTCAAAAC
** * * * *
40193 ATTATGAACTTTTTATTTTGTCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAA
1 ATTATG-ACCATTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTTGAAATAA
* * * * *
40257 AATAATACTAATTTACTAATATTTCAAAAA-T--T-AGTAAAAGATTTAAAAAGTTAATCA-GTT
64 AATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-ATGTT
** ** * * * **
40317 TACTAAATTAGTTCAAATAGATATGACTATTTGAACAATTATATATTTCAAATT
128 TACCGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAAC
* * * * * * * * **
40371 GTTATAACCTTTTGTTATCTCATAAAACAATTATTTCTATTCACACAAGTTTATTCAAAATAAAA
1 ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAA
* ** ** * * * *
40436 TAATACTAATATAACAATATTCTGAAAATTAATAACTAAGAGATTTAAAAAATAAATTTATTTAT
66 TAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTAC
* * * * * * ** **
40501 TGAACTAGTTCAAATA-TT-TAAGGCTATATAAACAATTCTTTATTTTGAATT
131 CGAACAAGTTCAAATAGTTATAA--CTATTTGAACAATTATCTATTTCAAAAC
* * * * * * *
40552 GTTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC-ATTTCTTAGTAA-CTTATTCGGAATAA
1 ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATA-CAAGCTTATTTGAAATAA
* * * * * *
40615 AGTAAAAACAAATTTATTAATATTTCAAAACTTAATAAATAAG
64 AAT-AATACTAATTTATTAATATTCCAAAAATTAATAAGTAAG
40658 TGTGGTAAAC
Statistics
Matches: 1344, Mismatches: 308, Indels: 128
0.76 0.17 0.07
Matches are distributed among these distances:
173 2 0.00
174 6 0.00
175 234 0.17
176 16 0.01
177 102 0.08
178 97 0.07
179 105 0.08
180 152 0.11
181 559 0.42
182 66 0.05
183 5 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (181 bp):
ATTATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAA
TAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTAC
CGAACAAGTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAAC
Done.