Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167885.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64552
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 2 of 2
Found at i:40000 original size:18 final size:19
Alignment explanation
Indices: 39973--40020 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
39963 GAATAAGTTC
*
39973 AAATAGTTATGACTATTT-
1 AAATAATTATGACTATTTA
39991 AAATAATTAT--CTATTTA
1 AAATAATTATGACTATTTA
*
40008 AAATCATTATGAC
1 AAATAATTATGAC
40021 CTTTTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 6 0.24
17 9 0.36
18 9 0.36
19 1 0.04
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (19 bp):
AAATAATTATGACTATTTA
Found at i:40228 original size:531 final size:535
Alignment explanation
Indices: 38756--40581 Score: 1455
Period size: 531 Copynumber: 3.4 Consensus size: 535
38746 TTTGTAAACA
** * * * * * *
38756 AAATTATTATGACTTTTTGTTTTGT-AATAAAACAATT-GTGCTTGTTCATACAAGTTTATTCGA
1 AAATTATTATGACAATTTGTTTAGTCAA-AAAACAATTATTTC-TATTCATACAAGCTTATTCAA
* * * ** * * * * * *
38819 ATTAAAATAATATTAATTTATTAATATTTTGACAATTAATAAGTGAAAGATTTAAAAAATAAATA
64 AATAAAATAATACTAATTTATTAAAATTTAAAAAATTAATAAG-AAAAGTTTTAAATAATATATC
* * * * * * * * * * *
38884 TGTTTATCAAACAAGTTCAAATAGTCAAGACTATTTGAA-TATTATCTATTTCAAATAATTTTGA
128 TATTTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATATATTTAAAATCATTATGA
* * * * * * * * * * * *
38948 CCTTCTATTTTGTAATAAAATAATTGTTTC-AGTTA-ATATAAGCTTATTTGAAATAAAATAGCT
193 CCTTTTATTTTATCATAAAACAACTATTTCTA--TACACAAAAGTTTATCTAAAATAAAATA-AT
* * * * * * * *
39011 -CTAATTTATGAATATACCAAAAATTAATG-AGTAAGAGAATTAAAAAAATGAA-TCTGTTTACC
255 ACTAGTTTATTAATATTCTAAAAATTAA-GAAGTTAGAG-ATTTAAAAAATAAATTC-ATTTACC
* * * * ** * * * * ** *
39073 GAACAAGCTCAAATAGTTATAACTATCTAAATAATTATCTATTTCAAAACATTATGACCATTTGT
317 AAACAAGTTCAAATAATCATGTCCATTTGAATAATTATCTATTTCAAATCATTATGACTTTTTTT
* * *
39138 TTGTCATAAAATAATTAG-TTTTGTTCATGCAAGCTTATTTTGAATAAAATAATA-TAAATTTAT
382 TTGTCATAAAATAATT-GTTTTTATTCATACAAGCTTATTTAGAATAAAATAATACT-AATTTAT
* * * * * *
39201 TAAAACTCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTTTTGAACATA-ATC-AA
445 TAATATTTCAAAAA-T--T-AATAAAGATTT-AAAAATAAATATGTTTTTT-AAAATAGTTCAAA
39264 TAGTTATGACTATTTGAACAATTATCTATTTC
504 TAGTTATGACTATTTGAACAATTATCTATTTC
** * * *
39296 AAATCGTTATGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCAAAA
1 AAATTATTATGACAATTTGTTTAGTCAAAAAACAATTATTTCTATTCATACAAGCTTATTCAAAA
* * ** * *
39361 TAAAATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGTTTTAAATAATATATTTG
66 TAAAATAATACTAATTTATTAAAATTTAAAAAATTAATAAG-AAAAGTTTTAAATAATATATCTA
* * * * * *
39426 TTTACCGAGCAAGTTCAAATAGTTATTACTATTTGAACAATTATATATTTCAAATCTTTATGATC
130 TTTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATATATTTAAAATCATTATGACC
* * * * * * **
39491 TTTTGTTTTGTCATAAAACAATTGTTTCTATTCACAAAAGTTTATTTGGAATAAAATAATACTAG
195 TTTTATTTTATCATAAAACAACTATTTCTATACACAAAAGTTTATCTAAAATAAAATAATACTAG
* * *
39556 TTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTATTTACCAAACAAGT
260 TTTATTAATATTCTAAAAATTAAGAAGTTAGAGATTTAAAAAATAAATTCATTTACCAAACAAGT
* * * * *
39621 TTAAATAGTCATGTCCATTTGAACT-ATTATTTATTTCAAATCATTATGA-TATTTTGTTTTATT
325 TCAAATAATCATGTCCATTTGAA-TAATTATCTATTTCAAATCATTATGACT-TTTT-TTTTGTC
** * *
39684 ATAAAATAATTGTTTTTATTCATACAAAATTATTCAGAATAAAATAATACTAATTTATTATTATT
387 ATAAAATAATTGTTTTTATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATT
* * ** * *
39749 TCAAAAATTAATAAGGATTTAAAAATAAATGTGTTTTTTTTAGTAGTTCAAATAGTTAAGACTAT
452 TCAAAAATTAATAAAGATTTAAAAATAAATATGTTTTTTAAAATAGTTCAAATAGTTATGACTAT
* *
39814 TAGAACAATTATCTATTCC
517 TTGAACAATTATCTATTTC
* * * * * * *
39833 AAATTATTTTGATATTTTGTTTAGTCAAAAAATAATTTTTTC-AGTTCATACATGCTTATTCGAA
1 AAATTATTATGACAATTTGTTTAGTCAAAAAACAATTATTTCTA-TTCATACAAGCTTATTCAAA
* *
39897 ATATAATAATACTAATTTATTAAAATTTAAAAAATTAATAA-AAAA-TTTTTAA-AA-A-ATCTA
65 ATAAAATAATACTAATTTATTAAAATTTAAAAAATTAATAAGAAAAGTTTTAAATAATATATCTA
* * * *
39957 TTTATCGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTAAAATCATTATGACC
130 TTTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATATATTTAAAATCATTATGACC
*
40022 TTTTATTTTATCATAAAACAACTATTT-TAGTACATAAAAGTTT-TCCTAAAATAAAATAATA-T
195 TTTTATTTTATCATAAAACAACTATTTCTA-TACACAAAAGTTTAT-CTAAAATAAAATAATACT
* * * *
40084 TGCTTTATTAATATT-TCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAA-TCAGTTTATCAAA
258 AG-TTTATTAATATTCT-AAAAATTAAGAAGTTAGAGATTTAAAAAATAAATTCA-TTTACCAAA
** *
40147 TTA-TTCAAATAATTATGGT-CATTTGAATAATTATCTATTTCAAATCATTATGAACTTTTTATT
320 CAAGTTCAAATAATCAT-GTCCATTTGAATAATTATCTATTTCAAATCATTATG-ACTTTTT-TT
* * * *
40210 TTGTCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAAATAATACTAATTTACT
382 TTGTCATAAAATAATTGTTTTT-ATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATT
* * ** * *
40274 AATATTTCAAAAATTAGTAAAAGATTTAAAAAGTTAATCA-GTTTACTAAATTAGTTCAAATAGA
446 AATATTTCAAAAATTAAT-AAAGATTTAAAAA-TAAAT-ATGTTTTTTAAAATAGTTCAAATAGT
*
40338 TATGACTATTTGAACAATTATATATTTC
508 TATGACTATTTGAACAATTATCTATTTC
* * ** * * * *
40366 AAATTGTTATAACCTTTTG-TTATCTCATAAAACAATTATTTCTATTCACACAAGTTTATTCAAA
1 AAATTATTATGACAATTTGTTTA-GTCAAAAAACAATTATTTCTATTCATACAAGCTTATTCAAA
* ** * * * * * * * *
40430 ATAAAATAATACTAATATAACAATATTCT-GAAAATTAATAACTAAGAGATTTAAAAAATAAATT
65 ATAAAATAATACTAATTTATTAAAATT-TAAAAAATTAATAA-GAAAAGTTTTAAATAATATATC
** * * * * * * * ** **
40494 TATTTATTGAACTAGTTCAAATATTTAAGGCTATATAAACAATTCTTTATTTTGAATTGTTATGA
128 TATTTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATATATTTAAAATCATTATGA
* *
40559 CCTTTTGTTTTGTCATAAAACAA
193 CCTTTTATTTTATCATAAAACAA
40582 TTTTTTCATT
Statistics
Matches: 1042, Mismatches: 206, Indels: 77
0.79 0.16 0.06
Matches are distributed among these distances:
529 1 0.00
530 48 0.05
531 233 0.22
532 18 0.02
533 126 0.12
534 8 0.01
535 9 0.01
536 26 0.02
537 128 0.12
538 2 0.00
539 74 0.07
540 205 0.20
541 162 0.16
542 2 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (535 bp):
AAATTATTATGACAATTTGTTTAGTCAAAAAACAATTATTTCTATTCATACAAGCTTATTCAAAA
TAAAATAATACTAATTTATTAAAATTTAAAAAATTAATAAGAAAAGTTTTAAATAATATATCTAT
TTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATATATTTAAAATCATTATGACCT
TTTATTTTATCATAAAACAACTATTTCTATACACAAAAGTTTATCTAAAATAAAATAATACTAGT
TTATTAATATTCTAAAAATTAAGAAGTTAGAGATTTAAAAAATAAATTCATTTACCAAACAAGTT
CAAATAATCATGTCCATTTGAATAATTATCTATTTCAAATCATTATGACTTTTTTTTTGTCATAA
AATAATTGTTTTTATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAA
AAATTAATAAAGATTTAAAAATAAATATGTTTTTTAAAATAGTTCAAATAGTTATGACTATTTGA
ACAATTATCTATTTC
Found at i:40970 original size:176 final size:177
Alignment explanation
Indices: 40692--41089 Score: 449
Period size: 176 Copynumber: 2.2 Consensus size: 177
40682 AATTTCTTAC
* * * * * * * * * * *
40692 TTATTAATTGTCAAAATATTAAAAAATTAGTATTATTTTAATCCAAATAAGCTTGTATAAATAGA
1 TTATTAATTTTTAAAATATTAACAAATTTGTATTACTTTATTCTAAATAAACTTATATGAACA-A
* * * * *
40757 AATAATTGTTTTATAACAGAACAAAAAGTCATAATGATTTGAAATAAATAATTACTCAAATAGTC
65 AACATTTGTTTAATAACAAAACAAAAAGTAATAATGATTTGAAATAAATAATTACTCAAATAGT-
* * * * *
40822 ATAACTTTTTGACTTAGTTTGATACATATATTTATTTTTTAAA-TC-AA
129 ATAACTTTTTGAATTAGTTAGATAAATAGAATTATTTTTTAAACTCTAA
* * *
40869 TTATTAATTTTTGAAATATTAATAGATTTGTATTACTTTATTCTAAATAAACTTATATGAACAAA
1 TTATTAATTTTTAAAATATTAACAAATTTGTATTACTTTATTCTAAATAAACTTATATGAACAAA
* * *
40934 ACATTTGTTTAATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTATTCAAATAGTAT
66 ACATTTGTTTAATAACAAAACAAAAAGTAATAATGATTTGAAATAAATAATTACTCAAATAGTAT
* * * *
40999 AATTTTTTGAATTGGTTAGGTAAATAGAATTATTTTTTAAATCTCTTAT
131 AACTTTTTGAATTAGTTAGATAAATAGAATTATTTTTTAAA-CTC-TAA
* *
41048 TTATTAATTTTTAAAATATTAACAAATTTGTTTTATTTTATT
1 TTATTAATTTTTAAAATATTAACAAATTTGTATTACTTTATT
41090 TCGAGTAAGC
Statistics
Matches: 182, Mismatches: 35, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
175 35 0.19
176 57 0.31
177 52 0.29
179 38 0.21
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (177 bp):
TTATTAATTTTTAAAATATTAACAAATTTGTATTACTTTATTCTAAATAAACTTATATGAACAAA
ACATTTGTTTAATAACAAAACAAAAAGTAATAATGATTTGAAATAAATAATTACTCAAATAGTAT
AACTTTTTGAATTAGTTAGATAAATAGAATTATTTTTTAAACTCTAA
Found at i:41571 original size:17 final size:17
Alignment explanation
Indices: 41546--41607 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
41536 ACAAACAACT
*
41546 ATTTGAATATTATTCTA
1 ATTTAAATATTATTCTA
* *
41563 ATTTAAATAATTATTTTC
1 ATTTAAAT-ATTATTCTA
**
41581 A-TTAGTTATTATTCTA
1 ATTTAAATATTATTCTA
*
41597 TTTTAAATATT
1 ATTTAAATATT
41608 TATGTTAAAT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
16 7 0.21
17 18 0.55
18 8 0.24
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTAAATATTATTCTA
Found at i:41726 original size:28 final size:30
Alignment explanation
Indices: 41690--41756 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 30
41680 AAATGATTAT
*
41690 TAATTAAAATATTA-ATTATAATT-TTT-AA
1 TAATAAAAATATTATATTAT-ATTATTTAAA
41718 TAATAAAAATATTATATTATATTATTTGAAA
1 TAATAAAAATATTATATTATATTATTT-AAA
41749 TAATAAAA
1 TAATAAAA
41757 TCTAAATAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
28 16 0.47
29 8 0.24
31 10 0.29
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (30 bp):
TAATAAAAATATTATATTATATTATTTAAA
Found at i:42354 original size:17 final size:16
Alignment explanation
Indices: 42318--42363 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
42308 ATTAGTTTAA
*
42318 ATATTAATATATATCG
1 ATATTAATATATATAG
42334 -TATTAATATATATAG
1 ATATTAATATATATAG
42349 TATATTAAT-TATATA
1 -ATATTAATATATATA
42364 ATTTTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 14 0.52
16 6 0.22
17 7 0.26
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (16 bp):
ATATTAATATATATAG
Found at i:42801 original size:23 final size:23
Alignment explanation
Indices: 42771--42818 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
42761 TAATGTAGTA
42771 ATAATATAAT-TCAAGTTAATAAT
1 ATAATATAATAT-AAGTTAATAAT
42794 ATAATATAATATAAGTTAATAAT
1 ATAATATAATATAAGTTAATAAT
42817 AT
1 AT
42819 TTAACTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (23 bp):
ATAATATAATATAAGTTAATAAT
Found at i:42860 original size:6 final size:6
Alignment explanation
Indices: 42849--42900 Score: 52
Period size: 6 Copynumber: 8.2 Consensus size: 6
42839 TTTAAAATTG
*
42849 TTATAA TTATAATA TTGATAA TTATAA TTATTA TTATAA -TATAAA TTATAA
1 TTATAA TTAT-A-A TT-ATAA TTATAA TTATAA TTATAA TTAT-AA TTATAA
42900 T
1 T
42901 AAATATTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
5 3 0.08
6 23 0.59
7 7 0.18
8 4 0.10
9 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (6 bp):
TTATAA
Found at i:42896 original size:12 final size:13
Alignment explanation
Indices: 42850--42901 Score: 63
Period size: 12 Copynumber: 4.0 Consensus size: 13
42840 TTAAAATTGT
42850 TATAATTATAATA
1 TATAATTATAATA
42863 TTGATAATTATAAT-
1 -T-ATAATTATAATA
*
42877 TATTATTATAATA
1 TATAATTATAATA
42890 TA-AATTATAATA
1 TATAATTATAATA
42902 AATATTAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 19 0.56
13 3 0.09
14 1 0.03
15 11 0.32
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (13 bp):
TATAATTATAATA
Found at i:42902 original size:27 final size:27
Alignment explanation
Indices: 42849--42916 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
42839 TTTAAAATTG
* ** *
42849 TTATAATTATAATATTGATAATTATAA
1 TTATTATTATAATATAAATAATAATAA
*
42876 TTATTATTATAATATAAATTATAATAA
1 TTATTATTATAATATAAATAATAATAA
* *
42903 ATATTAATATAATA
1 TTATTATTATAATA
42917 CAATTTTTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (27 bp):
TTATTATTATAATATAAATAATAATAA
Found at i:42907 original size:24 final size:27
Alignment explanation
Indices: 42854--42908 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 27
42844 AATTGTTATA
* *
42854 ATTATAATATTGATAATTATAATTATT
1 ATTATAATATTGATAATTATAATAAAT
42881 ATTATAATA-T-A-AATTATAATAAAT
1 ATTATAATATTGATAATTATAATAAAT
42905 ATTA
1 ATTA
42909 ATATAATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 15 0.58
25 1 0.04
26 1 0.04
27 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
ATTATAATATTGATAATTATAATAAAT
Found at i:42957 original size:14 final size:15
Alignment explanation
Indices: 42930--42987 Score: 50
Period size: 14 Copynumber: 3.9 Consensus size: 15
42920 TTTTTATTCT
* *
42930 TATACTATAATAATA
1 TATAATATATTAATA
42945 TA-AATATATTAATA
1 TATAATATATTAATA
42959 TATAA-ATTATTAATAA
1 TATAATA-TATTAAT-A
42975 TTATAAT-TATTAA
1 -TATAATATATTAA
42988 ATTAATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 13 0.36
15 11 0.31
16 7 0.19
17 5 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TATAATATATTAATA
Found at i:43909 original size:180 final size:180
Alignment explanation
Indices: 43598--43925 Score: 412
Period size: 180 Copynumber: 1.8 Consensus size: 180
43588 TCTATGAACG
* * * * * * *
43598 ATTATTTATTTCAAATCATTATGACCTTTTCTTTTATTGTAAAATAATTGTTTTGTTCGTACAAG
1 ATTATCTACTTCAAATCATTATGACCTTTTCGTTTATTATAAAACAATTGTTTAGTTCATACAAG
* * * * * *
43663 CTTATTCGTATTAAAATAACACTAATTTAATAATATTTTGAATATTAATAAGTAAGATATTT-AA
66 CTTATTAGTAATAAAATAACACTAATTTAATAACATTTTGAAAATTAATAAGAAAGAGATTTAAA
*
43727 AAATAAATTTGTTTACTAAGTCAGTTCAAATTGTTAAGATTATTAGAATA
131 AAATAAATTTATTTACTAAGTCAGTTCAAATTGTTAAGATTATTAGAATA
*
43777 ATTATCTACTTCAAATCATTATGATCTTTT-GTTTAGTTATAAAACAATTGTTTCAGTTCATACA
1 ATTATCTACTTCAAATCATTATGACCTTTTCGTTTA-TTATAAAACAATTGTTT-AGTTCATACA
* * * *
43841 AGCTTATTAAG-AATAAATTAATACTAATTTATTAACA-TTTGAAAAATTAATATGAAAGAGATT
64 AGCTTATT-AGTAATAAAATAACACTAATTTAATAACATTTTG-AAAATTAATAAGAAAGAGATT
43904 TAAAAAAATAAATTTATTTACT
127 T-AAAAAATAAATTTATTTACT
43926 GAACAAATTC
Statistics
Matches: 124, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
178 4 0.03
179 46 0.37
180 55 0.44
181 1 0.01
182 18 0.15
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (180 bp):
ATTATCTACTTCAAATCATTATGACCTTTTCGTTTATTATAAAACAATTGTTTAGTTCATACAAG
CTTATTAGTAATAAAATAACACTAATTTAATAACATTTTGAAAATTAATAAGAAAGAGATTTAAA
AAATAAATTTATTTACTAAGTCAGTTCAAATTGTTAAGATTATTAGAATA
Found at i:44175 original size:15 final size:12
Alignment explanation
Indices: 44137--44166 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
44127 TAAACTTAAT
44137 ATATATTATTATA
1 ATAT-TTATTATA
44150 ATATTTATTATA
1 ATATTTATTATA
44162 ATATT
1 ATATT
44167 GTTAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATATTTATTATA
Found at i:44572 original size:20 final size:20
Alignment explanation
Indices: 44530--44574 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
44520 AAAGAACATT
*
44530 TAAATATTACTAATTAATAA
1 TAAATATTAATAATTAATAA
* * *
44550 TAAATATTAATTATTTATTA
1 TAAATATTAATAATTAATAA
44570 TAAAT
1 TAAAT
44575 TATACTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TAAATATTAATAATTAATAA
Found at i:44916 original size:16 final size:18
Alignment explanation
Indices: 44887--44921 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
44877 TATATAATTA
44887 AATATAACTATTATTAAT
1 AATATAACTATTATTAAT
44905 AATATAA-T-TTATTAAT
1 AATATAACTATTATTAAT
44921 A
1 A
44922 CAAAATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 1 0.06
18 7 0.41
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AATATAACTATTATTAAT
Found at i:45382 original size:18 final size:19
Alignment explanation
Indices: 45342--45391 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
45332 TAATATCCAA
45342 ATAATATTTATATTAAATATT
1 ATAATA-TTAT-TTAAATATT
*
45363 ATTATATTATTTAAAT-TT
1 ATAATATTATTTAAATATT
45381 ATAATATTATT
1 ATAATATTATT
45392 ATTTTGAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 12 0.44
19 6 0.22
20 4 0.15
21 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATAATATTATTTAAATATT
Found at i:45706 original size:5 final size:5
Alignment explanation
Indices: 45697--45734 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
45687 TAATAATATA
*
45697 ATTAT GTTAT ATTAT ATTAT ATTAT ATTAT ATTA- ATTA
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
45735 AAGTTAAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:47376 original size:182 final size:179
Alignment explanation
Indices: 46982--47448 Score: 469
Period size: 182 Copynumber: 2.6 Consensus size: 179
46972 GTAAGGGTTT
* * * * * * *
46982 AAAAAAAATGTGTTTGCTAAATCAGTTCAAATAGTTAAGACTATTAGAATAATTATCTA-TTACA
1 AAAAAAAATCTATTTACTGAATCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTA-A
* * * * * * *
47046 AATCGTTTTGATCTTTTGTTTAGTCATAAAATAATTGCTTCAACTCATACATGCTTATTTGAAAT
65 AATCGTTATGAACTTTT-TTTA-TCATAAAACAATTGTTTCAACTCATAAAAGCTTATCTGAAAT
*
47111 AAAATAATACTAATTTATTAAAATTCAAAAAATTATTAAGTAAGAAATTAGA
128 AAAATAATACTAATTTATTAAAATTCAAAAAATTAATAAGTAAGAAATTAGA
* * * *
47163 AAAAAAAATCTATTTACTGGA-CAAGTTCAAATATTTTTGACTATTTGAACAATTATCTATTTAA
1 AAAAAAAATCTATTTACTGAATC-AGTTCAAATAATTATGACTATTTGAATAATTATCTATTTAA
* *
47227 AATCGTTATGACCTTATATTTTATCATAAAACAATTGTTTCAAGTTCATAAAAGCTTATCTGAAA
65 AATCGTTATGAACTT-T-TTTTATCATAAAACAATTGTTTCAA-CTCATAAAAGCTTATCTGAAA
* * * * *
47292 TAAAATAATATTACTTTATTAATATT-ACAAAAATTAATAAGTTAGAGATTTA-A
127 TAAAATAATACTAATTTATTAAAATTCA-AAAAATTAATAAGTAAGA-AATTAGA
* * * * * *
47345 AACATAAATC-AGTTTA-TCGAATCAGTTCAAATAATTATGGCCATTTAAATAATTATCTATTTC
1 AAAAAAAATCTA-TTTACT-GAATCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTA
* *
47408 AAATCATTATGAACTTTTGTTTTCTCATAAAACAATTGTTT
64 AAATCGTTATGAAC-TTT-TTTTATCATAAAACAATTGTTT
47449 AAATTATTTT
Statistics
Matches: 237, Mismatches: 38, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
180 1 0.00
181 82 0.35
182 146 0.62
183 8 0.03
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (179 bp):
AAAAAAAATCTATTTACTGAATCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTAAA
ATCGTTATGAACTTTTTTTATCATAAAACAATTGTTTCAACTCATAAAAGCTTATCTGAAATAAA
ATAATACTAATTTATTAAAATTCAAAAAATTAATAAGTAAGAAATTAGA
Found at i:47480 original size:30 final size:29
Alignment explanation
Indices: 47446--47515 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
47436 AAAACAATTG
* *
47446 TTTAAATTATT-TTATTTAAATAATAAGTAA
1 TTTAAATTATTATTAATTAAACAAT-A-TAA
47476 TTTAAATAATATTATTAATTAAACAATATAA
1 TTTAAAT--TATTATTAATTAAACAATATAA
47507 -TTAAATTAT
1 TTTAAATTAT
47516 AACATTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
28 3 0.09
30 13 0.37
31 3 0.09
32 5 0.14
33 11 0.31
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (29 bp):
TTTAAATTATTATTAATTAAACAATATAA
Found at i:47503 original size:17 final size:17
Alignment explanation
Indices: 47477--47529 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
47467 AATAAGTAAT
* *
47477 TTAAATAATATTATTAA
1 TTAAACAATATAATTAA
47494 TTAAACAATATAATTAAA
1 TTAAACAATATAATT-AA
* *
47512 TTATAACATTAAAATTAA
1 TTA-AACAATATAATTAA
47530 AATTATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 13 0.43
18 7 0.23
19 10 0.33
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAACAATATAATTAA
Found at i:47527 original size:19 final size:20
Alignment explanation
Indices: 47492--47535 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
47482 TAATATTATT
*
47492 AATTA-AACAATATAATT-A
1 AATTATAACAATAAAATTAA
*
47510 AATTATAACATTAAAATTAA
1 AATTATAACAATAAAATTAA
47530 AATTAT
1 AATTAT
47536 TTTAATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 10 0.45
20 7 0.32
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTATAACAATAAAATTAA
Found at i:49318 original size:13 final size:13
Alignment explanation
Indices: 49300--49324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49290 AATAAATTAG
49300 TATTATTATTTAT
1 TATTATTATTTAT
49313 TATTATTATTTA
1 TATTATTATTTA
49325 ATTTTAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTATTATTTAT
Found at i:49646 original size:13 final size:13
Alignment explanation
Indices: 49638--49662 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49628 AAATTAAAAG
49638 TTATTATTAATAA
1 TTATTATTAATAA
49651 TTATTATTAATA
1 TTATTATTAATA
49663 CAAATAAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTATTAATAA
Found at i:50824 original size:181 final size:179
Alignment explanation
Indices: 50417--52011 Score: 1134
Period size: 181 Copynumber: 8.9 Consensus size: 179
50407 TTTTGCCTTA
* ** *
50417 TCATAAAAGAATTGTTTCAATTCATATAAACTTATTCAAAATAAAATAATACTAATTTATTAATA
1 TCATAAAACAATTGTTTCTGTTCATACAAACTTATTC-AAATAAAATAATACTAATTTATTAAT-
** * * * * * * * * *
50482 ATCCAAAAATTTATAA-TAAAGAGATTTAAAAAAT-GA-CTGTTTTCTAAAAAAATTTAAATAAT
64 ATTTAAAAATTAATAAGTAAA-AGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGT
* * * * * * * * *
50544 TAGGACTGTTTAAATAATTATTTATTTGAAATAGCTATAACCTTTTGTTTTG
128 TATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTTGTTTTG
* * * * *
50596 TCATAAAAGAATTTTTTCTGTTTAT-CTAAGCTTATTTCGAATAAAATAATAC-ATATTTATTAA
1 TCATAAAACAATTGTTTCTGTTCATAC-AAACTTA-TTCAAATAAAATAATACTA-ATTTATTAA
* *
50659 TATTAAAACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAATAAGTTCAAATCA
63 TATTTAAA-AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAAT-A
* ** * * *
50724 -TTATGGCTATTTGAGCAATTATTTATTTCAACTTGTTATGACTTTTTGTTTTG
126 GTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTTGTTTTG
* * * * * **
50777 TCATCAAATAATTATTTCTGTTCATACAAATTTATTCAAATTAAAATAATATTAATTTACAAATA
1 TCATAAAACAATTGTTTCTGTTCATACAAACTTATTCAAA-TAAAATAATACTAATTTATTAATA
* * * * ** *
50842 TTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTATTAAACAAGTTCAAATAGTC
65 -TTTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTT
* * * * *
50907 ATGAATATTTGAGTAATTATCTATTTCAAATCATTATGACCTTTTCTTTTG
129 ATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTTGTTTTG
** ** ** * * * * *
50958 -CAATAAAACACCTGTTTCAATTCATGTAAGCTTATTTGAAGTAAGATAATACTAATTCATTAAT
1 TC-ATAAAACAATTGTTTCTGTTCATACAAACTTA-TTCAAATAAAATAATACTAATTTATTAAT
* * * * * *
51022 ATTCTAAAAATTAATGAGTAAGAGAATTAAAAAA-AGAATATGTTTATCGAATAAGTTCAAATAG
64 ATT-TAAAAATTAATAAGTAAAAGATTTAAAAAATA-AATATGTTTACCAAACAAGTTCAAATAG
* * * *
51086 TTATGATTATCTGAATAATTATCTATTTCAAAACATTATGA-TCTTTTGTTTTG
127 TTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACT-TTTTGTTTTG
* * * * * *
51139 TCATTAAACAATTGGTTCTGTTCATGCAAGCTTATTTCAAATAAAGTAAT-TTAAATTTATTAAT
1 TCATAAAACAATTGTTTCTGTTCATACAAACTTA-TTCAAATAAAATAATACT-AATTTATTAAT
* * * * ** *
51203 ATTCTGAAAATTAATAAGTAAAA-CTTTAAAAAATAAATATATTTTCTGAACAATTTCAAATAGT
64 ATT-TAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGT
* * * * *
51267 TATAACTATTTGAAGAATTATCTATTTTAAATCGTTATAACCTTTTGTTTTG
128 TATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTTGTTTTG
* * * * *
51319 TCATAAACCAATTGTTTCTATTCATA-AAAGCTTTTTTGAAATAAAATAATACTAATTTATTAAA
1 TCATAAAACAATTGTTTCTGTTCATACAAA-C-TTATTCAAATAAAATAATACTAATTTATTAAT
* * ** * *
51383 ATTTCAAAAATTAATAAGTAGAAGATTTAAAAAATAAATTTGTTTACTGAGCAGGTTCAAATAGT
64 ATTT-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGT
* * * *
51448 TATGACTATTGGAATAATTATTTATTTCAAATGGTTATGA-TCTTTCGTTTTG
128 TATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACT-TTTTGTTTTG
* * * ** * * **
51500 TCACAAAACAATTATTTCTATTCATACAATTTTATTTGAAATAAAATAATGCTAATTTATTGGTA
1 TCATAAAACAATTGTTTCTGTTCATACAAACTTA-TTCAAATAAAATAATACTAATTTATTAATA
* *** * * *
51565 TGCTAAAAATTAATAAGTTTGAGATTTCAAAAATAAATTTGTTTA-CAGAACAAGTTCTAATAGT
65 T-TTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCA-AACAAGTTCAAATAGT
* * * * ** *
51629 CAT-ATTTATTTAAACT-ATTATTTATTTCAAATTATAATGA-TATTTT-TTTTG
128 TATGA-CTATTTGAA-TAATTATCTATTTCAAATCGTTATGACT-TTTTGTTTTG
* * * * * *
51680 TCGTAAAATAATTATTTTTGTTCATGTAC-AA-TTATTCAGAATATAATAATACT-ATGTATTAA
1 TCATAAAACAATTGTTTCTGTTCA--TACAAACTTATTCA-AATAAAATAATACTAATTTATTAA
* * * * *
51742 TATTTTGATAATTAATAAG----ATATTTAAAAACA-AAATCTATTTACCAAA-ATAGTTCAAAT
63 TA-TTTAAAAATTAATAAGTAAAAGATTTAAAAA-ATAAATATGTTTACCAAACA-AGTTCAAAT
* * * * *
51801 ATTTATGACTATTTGAACAATTATCTATCTCAAATCTTTATGATCTTTAT-TTTT-
125 AGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGA-CTTTTTGTTTTG
* * *** * * *
51855 TCATAAAACAAGTGTTTCTTTTCATACTGGCTTATTCAATTCAAATAATACTAATTTAATAATAT
1 TCATAAAACAATTGTTTCTGTTCATACAAACTTATTCAAATAAAATAATACTAATTTATTAATAT
* * * * *
51920 TCCAAAAA-T--T-AGTAAGAGATTTAAAAAAATAAATATGTTTGCTGAACCAA-TTCAAATAGT
66 T-TAAAAATTAATAAGTAAAAGATTT-AAAAAATAAATATGTTTAC-CAAACAAGTTCAAATAGT
* *
51980 TAAGACTATTAGAATAATTATCTATTTCAAAT
128 TATGACTATTTGAATAATTATCTATTTCAAAT
52012 AACAAGTATT
Statistics
Matches: 1118, Mismatches: 241, Indels: 117
0.76 0.16 0.08
Matches are distributed among these distances:
171 2 0.00
172 1 0.00
173 3 0.00
174 15 0.01
175 101 0.09
176 62 0.06
177 4 0.00
178 7 0.01
179 97 0.09
180 199 0.18
181 609 0.54
182 18 0.02
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
TCATAAAACAATTGTTTCTGTTCATACAAACTTATTCAAATAAAATAATACTAATTTATTAATAT
TTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTAT
GACTATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTTGTTTTG
Found at i:51415 original size:361 final size:358
Alignment explanation
Indices: 50417--52011 Score: 1138
Period size: 361 Copynumber: 4.4 Consensus size: 358
50407 TTTTGCCTTA
* * ** * * *
50417 TCATAAAAGAATTGTTTCAATTCATATAAACTTA-TTCAAAATAAAATAATACTAATTTATTAAT
1 TCATAAAACAATTATTTCTGTTCATACAAATTTATTTC-AAATAAAATAATATTAATTTATTAAT
* ** * * * * * *
50481 AATCCAAAAATTTATAA-TAAAGAGATTTAAAAAAT-GAC-TGTTT-TCTAAAAAAATTTAAATA
65 ATTCTGAAAATTAATAAGTAAA-AGATTTAAAAAATAAACATATTTAT-TAAACAAGTTCAAATA
* * * * * * * * * * * *
50542 ATTAGGACTGTTTAAATAATTATTTATTTGAAATAGCTATAACCTTTTGTTTTGTCATAAAAGAA
128 GTCATGAATATTTGAGTAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAA
* * * * * *
50607 TTTTTTCTGTTTATCTAAGCTTATTTCG-AATAAAATAATAC-ATATTTATTAATATTAAAACAA
193 TTGTTTCTATTCATATAAGCTT-TTTTGAAATAAAATAATACTA-ATTTATTAATATTCAAA-AA
* *
50670 TTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAATAAGTTCAAATCA-TTATGGCTAT
255 TTAATAAGT-AAAGATTTAAAAAATAAATATGTTTA-CGAATAAGTTCAAAT-AGTTATGACTA-
** * *
50734 TTGAGCAATTATTTATTTCAACTTGTTATGA-CTTTTTGTTTTG
316 TTGAATAATTATTTATTTCAAATCGTTATGATC-TTTTGTTTTG
* * **
50777 TCATCAAATAATTATTTCTGTTCATACAAATTTA-TTCAAATTAAAATAATATTAATTTACAAAT
1 TCATAAAACAATTATTTCTGTTCATACAAATTTATTTCAAA-TAAAATAATATTAATTTATTAAT
* *
50841 ATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTATTAAACAAGTTCAAATAGT
65 ATTCTGAAAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTATTAAACAAGTTCAAATAGT
* * * **
50906 CATGAATATTTGAGTAATTATCTATTTCAAATCATTATGACCTTTTCTTTTG-CAATAAAACACC
130 CATGAATATTTGAGTAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTC-ATAAAACAAT
* * * * * *
50970 TGTTTCAATTCATGTAAGCTTATTTGAAGTAAGATAATACTAATTCATTAATATTCTAAAAATTA
194 TGTTTCTATTCATATAAGCTTTTTTGAAATAAAATAATACTAATTTATTAATATTC-AAAAATTA
* * *
51035 ATGAGTAAGAGAATTAAAAAA-AGAATATGTTTATCGAATAAGTTCAAATAGTTATGATTATCTG
258 ATAAGTAA-AGATTTAAAAAATA-AATATGTTTA-CGAATAAGTTCAAATAGTTATGACTAT-TG
* * *
51099 AATAATTATCTATTTCAAAACATTATGATCTTTTGTTTTG
319 AATAATTATTTATTTCAAATCGTTATGATCTTTTGTTTTG
* ** * ** *
51139 TCATTAAACAATTGGTTCTGTTCATGCAAGCTTATTTCAAATAAAGTAAT-TTAAATTTATTAAT
1 TCATAAAACAATTATTTCTGTTCATACAAATTTATTTCAAATAAAATAATATT-AATTTATTAAT
* * * *
51203 ATTCTGAAAATTAATAAGTAAAA-CTTTAAAAAATAAATATATTT-TCTGAACAATTTCAAATAG
65 ATTCTGAAAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTAT-TAAACAAGTTCAAATAG
* * *
51266 TTAT-AACTATTTGAAG-AATTATCTATTTTAAATCGTTATAACCTTTTGTTTTGTCATAAACCA
129 TCATGAA-TATTTG-AGTAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACA
* *
51329 ATTGTTTCTATTCATAAAAGCTTTTTTGAAATAAAATAATACTAATTTATTAAAATTTCAAAAAT
192 ATTGTTTCTATTCATATAAGCTTTTTTGAAATAAAATAATACTAATTTATTAATA-TTCAAAAAT
* ** *
51394 TAATAAGTAGAAGATTTAAAAAATAAATTTGTTTACTGAGCAGGTTCAAATAGTTATGACTATTG
256 TAATAAGTA-AAGATTTAAAAAATAAATATGTTTAC-GAATAAGTTCAAATAGTTATGACTATT-
* *
51459 GAATAATTATTTATTTCAAATGGTTATGATCTTTCGTTTTG
318 GAATAATTATTTATTTCAAATCGTTATGATCTTTTGTTTTG
* * * * ** **
51500 TCACAAAACAATTATTTCTATTCATACAATTTTATTTGAAATAAAATAATGCTAATTTATTGGTA
1 TCATAAAACAATTATTTCTGTTCATACAAATTTATTTCAAATAAAATAATATTAATTTATTAATA
* * *** * ** * * *
51565 TGCTAAAAATTAATAAGTTTGAGATTTCAAAAATAAATTTGTTTA-CAGAACAAGTTCTAATAGT
66 TTCTGAAAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTATTA-AACAAGTTCAAATAGT
* * * * ** * * ** * *
51629 CAT-ATTTATTTAAACT-ATTATTTATTTCAAATTATAATGATATTTT-TTTTGTCGTAAAATAA
130 CATGA-ATATTT-GAGTAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAA
* * * * * * * * * ** *
51691 TTATTTTTGTTCATGT-A-CAATTATTCAGAATATAATAATACT-ATGTATTAATATTTTGATAA
193 TTGTTTCTATTCATATAAGC-TTTTTTGA-AATAAAATAATACTAATTTATTAATA-TTCAAAAA
* * * * * *
51753 TTAATAAG---ATATTTAAAAACA-AAATCTATTTACCAAAATAGTTCAAATATTTATGACTATT
255 TTAATAAGTAAAGATTTAAAAA-ATAAATATGTTTACGAATA-AGTTCAAATAGTTATGACTA-T
* * * *
51814 TGAACAATTATCTATCTCAAATCTTTATGATCTTTAT-TTTT-
317 TGAATAATTATTTATTTCAAATCGTTATGATCTTT-TGTTTTG
* * * **** * * * *
51855 TCATAAAACAAGTGTTTCTTTTCATACTGGCTTA-TTCAATTCAAATAATACTAATTTAATAATA
1 TCATAAAACAATTATTTCTGTTCATACAAATTTATTTCAAATAAAATAATATTAATTTATTAATA
* * * * * * * *
51919 TTC--CAAA--AATTAGTAAGAGATTTAAAAAAATAAATATGTTTGCTGAACCAA-TTCAAATAG
66 TTCTGAAAATTAATAAGTAAAAGATTT-AAAAAATAAACATATTT-ATTAAACAAGTTCAAATAG
* * * * *
51979 TTAAGACTATTAGAATAATTATCTATTTCAAAT
129 TCATGAATATTTGAGTAATTATCTATTTCAAAT
52012 AACAAGTATT
Statistics
Matches: 984, Mismatches: 208, Indels: 95
0.76 0.16 0.07
Matches are distributed among these distances:
350 15 0.02
351 44 0.04
352 8 0.01
353 1 0.00
354 25 0.03
355 28 0.03
356 71 0.07
357 3 0.00
359 4 0.00
360 108 0.11
361 341 0.35
362 324 0.33
363 12 0.01
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (358 bp):
TCATAAAACAATTATTTCTGTTCATACAAATTTATTTCAAATAAAATAATATTAATTTATTAATA
TTCTGAAAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTATTAAACAAGTTCAAATAGTC
ATGAATATTTGAGTAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTG
TTTCTATTCATATAAGCTTTTTTGAAATAAAATAATACTAATTTATTAATATTCAAAAATTAATA
AGTAAAGATTTAAAAAATAAATATGTTTACGAATAAGTTCAAATAGTTATGACTATTGAATAATT
ATTTATTTCAAATCGTTATGATCTTTTGTTTTG
Found at i:51443 original size:542 final size:532
Alignment explanation
Indices: 50585--52011 Score: 1311
Period size: 542 Copynumber: 2.6 Consensus size: 532
50575 TAGCTATAAC
* * * * *
50585 CTTTTGTTTTGTCATAAAAGAATTTTTTCTGTTTAT-CTAAGCTTATTTCGAATAAAATAATACA
1 CTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATGC-AAGCTTATTTCAAAT-AAATAAT-TA
** *
50649 TATTTATTAATATTAAAACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAATAA
63 TATTTATTAATATTTGAA-AATTAATAAGT-AAA-ATTTAAAAAATAAATATATTTA-CAAA-AA
* * * * * *
50714 GTTCAAATCATTATGGCTATTTG-AGCAATTATTTATTTCAACTTGTTATGACTTTTTGTTTTGT
123 TTTCAAAT-ATTATGACTATTTGAAG-AATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * * *
50778 CATCAAATAATTATTTCTGTTCATACAAA--TTTATTCAAATTAAAATAATATTAATTTACAAAT
186 CAT-AAACAATTGTTTCTATTCATA-AAAGCTTTATTCAAA-TAAAATAATACTAATTTATAAA-
** * * * * * *
50841 ATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAACATATTTATTAAACAAGTTCAAATAGT
247 ATTTCAAAAATTAATAAGTAGAAGATTTAAAAAATAAATATGTTTACTGAAC-AGTTCAAATAGT
* * * * * *
50906 CATGAATATTTGAGTAATTATCTATTTCAAATCATTATGACCTTTTC-TTTTG-CAATAAAACAC
311 TATGACTATTAGAATAATTATCTATTTCAAATCATTATGACC-TTTCGTTTTGTC-ACAAAACAA
* ** * * *
50969 CTGTTTCAATTCATGTAAGCTTATTTGAAGTAAGATAATACTAATTCATTAATATTCTAAAAATT
374 CTATTTCAATTCATACAAGCTTATTTGAAATAAAATAATACTAATTCATTAATATGCTAAAAATT
* * *
51034 AATGAGTAAGAGAATT-AAAAAAAGAATATGTTTATC-GAATAAGTTCAAATAGTTATGA-TTAT
439 AATAAGTAAGAGAATTCAAAAAAA-AATATGTTTA-CAGAACAAGTTCAAATAGTCAT-ATTTAT
* *
51096 CTGAA-TAATTATCTATTTCAAAACATTATGAT
501 CTAAACT-ATTATCTATTTCAAAACATAATGAT
* ** *
51128 CTTTTGTTTTGTCATTAAACAATTGGTTCTGTTCATGCAAGCTTATTTCAAATAAAGTAATTTAA
1 CTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATGCAAGCTTATTTCAAATAAA-TAA-TTAT
* *
51193 ATTTATTAATATTCTGAAAATTAATAAGTAAAACTTTAAAAAATAAATATATTTTCTGAACAATT
64 ATTTATTAATATT-TGAAAATTAATAAGTAAAA-TTTAAAAAATAAATATATTTAC--AAAAATT
* * *
51258 TCAAATAGTTATAACTATTTGAAGAATTATCTATTTTAAATCGTTATAACCTTTTGTTTTGTCAT
125 TCAAATA-TTATGACTATTTGAAGAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* *
51323 AAACCAATTGTTTCTATTCATAAAAGCTTTTTTGAAATAAAATAATACTAATTTATTAAAATTTC
189 AAA-CAATTGTTTCTATTCATAAAAGCTTTATTCAAATAAAATAATACTAATTTA-TAAAATTTC
* *
51388 AAAAATTAATAAGTAGAAGATTTAAAAAATAAATTTGTTTACTGAGCAGGTTCAAATAGTTATGA
252 AAAAATTAATAAGTAGAAGATTTAAAAAATAAATATGTTTACTGAACA-GTTCAAATAGTTATGA
* * ** * *
51453 CTATTGGAATAATTATTTATTTCAAATGGTTATGATCTTTCGTTTTGTCACAAAACAATTATTTC
316 CTATTAGAATAATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCACAAAACAACTATTTC
* ** * * **
51518 TATTCATACAATTTTATTTGAAATAAAATAATGCTAATTTATTGGTATGCTAAAAATTAATAAGT
381 AATTCATACAAGCTTATTTGAAATAAAATAATACTAATTCATTAATATGCTAAAAATTAATAAGT
** * * * * *
51583 TTGAGATTTCAAAAATAAATTTGTTTACAGAACAAGTTCTAATAGTCATATTTATTTAAACTATT
446 AAGAGAATTCAAAAAAAAATATGTTTACAGAACAAGTTCAAATAGTCATATTTATCTAAACTATT
* **
51648 ATTTATTTCAAATTATAATGAT
511 ATCTATTTCAAAACATAATGAT
* * * *
51670 ATTTT-TTTTGTCGTAAAATAATTATTTTTGTTCATGTACAA--TTA-TTCAGAATATAATAA-T
1 CTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATG--CAAGCTTATTTCA-AATA-AATAATT
* * * *
51730 ACTATGTATTAATATTTTGATAATTAATAAG--ATATTTAAAAACA-AAATCTATTTACCAAAAT
62 A-TATTTATTAATA-TTTGAAAATTAATAAGTAAAATTTAAAAA-ATAAATATATTTA-CAAAA-
* * * * *
51792 AGTTCAAATATTTATGACTATTTGAACAATTATCTATCTCAAATCTTTATGATCTTTAT-TTTT-
122 ATTTCAAATA-TTATGACTATTTGAAGAATTATCTATTTCAAATCGTTATGACCTTT-TGTTTTG
* * *** * * *
51855 TCATAAAACAAGTGTTTCTTTTCATACTGGC-TTATTCAATTCAAATAATACTAATTTAATAATA
185 TCAT-AAACAATTGTTTCTATTCATAAAAGCTTTATTCAAATAAAATAATACTAATTT-ATAAAA
* * * *
51919 TTCCAAAAATTAGT-A--AG-AGATTTAAAAAAATAAATATGTTTGCTGAACCAATTCAAATAGT
248 TTTCAAAAATTAATAAGTAGAAGATTT-AAAAAATAAATATGTTTACTGAA-CAGTTCAAATAGT
*
51980 TAAGACTATTAGAATAATTATCTATTTCAAAT
311 TATGACTATTAGAATAATTATCTATTTCAAAT
52012 AACAAGTATT
Statistics
Matches: 730, Mismatches: 120, Indels: 79
0.79 0.13 0.09
Matches are distributed among these distances:
531 6 0.01
532 61 0.08
533 2 0.00
534 1 0.00
535 38 0.05
536 26 0.04
537 72 0.10
538 5 0.01
539 2 0.00
540 27 0.04
541 53 0.07
542 334 0.46
543 99 0.14
544 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (532 bp):
CTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATGCAAGCTTATTTCAAATAAATAATTATAT
TTATTAATATTTGAAAATTAATAAGTAAAATTTAAAAAATAAATATATTTACAAAAATTTCAAAT
ATTATGACTATTTGAAGAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAACAAT
TGTTTCTATTCATAAAAGCTTTATTCAAATAAAATAATACTAATTTATAAAATTTCAAAAATTAA
TAAGTAGAAGATTTAAAAAATAAATATGTTTACTGAACAGTTCAAATAGTTATGACTATTAGAAT
AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCACAAAACAACTATTTCAATTCATACA
AGCTTATTTGAAATAAAATAATACTAATTCATTAATATGCTAAAAATTAATAAGTAAGAGAATTC
AAAAAAAAATATGTTTACAGAACAAGTTCAAATAGTCATATTTATCTAAACTATTATCTATTTCA
AAACATAATGAT
Found at i:52530 original size:10 final size:10
Alignment explanation
Indices: 52515--52548 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
52505 AAACTACTAT
52515 ATAATAATTA
1 ATAATAATTA
52525 ATAAT-ATTA
1 ATAATAATTA
*
52534 ATAATATTTA
1 ATAATAATTA
52544 ATAAT
1 ATAAT
52549 TTAAGTACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
ATAATAATTA
Found at i:52537 original size:19 final size:19
Alignment explanation
Indices: 52496--52552 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
52486 ATTAATTAAG
* *
52496 ATAATAATTAA-ACTACTA
1 ATAATAATTAATAATATTA
52514 TATAATAATTAATAATATTA
1 -ATAATAATTAATAATATTA
*
52534 ATAATATTTAATAAT-TTA
1 ATAATAATTAATAATATTA
52552 A
1 A
52553 GTACTACTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.12
19 25 0.74
20 5 0.15
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAATAATTAATAATATTA
Found at i:53457 original size:145 final size:146
Alignment explanation
Indices: 53246--53513 Score: 407
Period size: 145 Copynumber: 1.8 Consensus size: 146
53236 TTGAATTAGC
*
53246 TCAGTAAATAGATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAATA
1 TCAGTAAACAGATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAATA
* * *
53311 TTATTTTATTTCA-AATATGCTTATATGAACAGAAACGATTGGTT-TATGACAAAACAAAGGGTT
66 TTATTTTA-TTCATAATAAGCTTATATGAACAGAAACAATT-GTTATAGGACAAAACAAAGGGTT
53374 ATAACTATTTGAACATAT
129 ATAACTATTTGAACATAT
* *
53392 TCAGTAAACATATTTATTTTTAAAA-TTTTTACTTATTAATTTTTGAAATATTAATAAATTTATA
1 TCAGTAAACAGATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAATA
* * * *
53456 TTATTTTATTCATAATAAGCTTGTTTGAATAGAAACAATTGTTATAGGGCAAAACAAA
66 TTATTTTATTCATAATAAGCTTATATGAACAGAAACAATTGTTATAGGACAAAACAAA
53514 ATATCATAAC
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
144 7 0.06
145 80 0.73
146 23 0.21
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.44
Consensus pattern (146 bp):
TCAGTAAACAGATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAATA
TTATTTTATTCATAATAAGCTTATATGAACAGAAACAATTGTTATAGGACAAAACAAAGGGTTAT
AACTATTTGAACATAT
Found at i:53807 original size:137 final size:136
Alignment explanation
Indices: 53577--53826 Score: 353
Period size: 137 Copynumber: 1.8 Consensus size: 136
53567 TTTGTTTGGC
* *
53577 AAACAAATTTTTTTTAAAATCTCCAATTTATTAATTTTTAGAATATTAATTAATTAGTATTATTT
1 AAACAAATTTTTTTTAAAATCTCCAACTTATTAATTTTTAGAATATTAATTAATTAGCATTATTT
* * *
53642 TATTTTGAATAAACTTGTATGAATAGAAAC-ATATGTTTTATGACAAAACCTAATTATTTGAACT
66 TAATATGAATAAACTTGTATGAAAAGAAACGAT-TGTTTTATGACAAAACCTAATTATTTGAACT
53706 GGTTTGT
130 GGTTTGT
* * **
53713 AAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTT-GAAATATT-ATTAAATTAGCATTA
1 AAACAAATTT-TTTTTAAAATCTCCAACTTATTAATTTTTAG-AATATTAATT-AATTAGCATTA
*
53776 TTTTAATATGAATAAGCTTGTATGAAAAGAAACGATTGTTTTATGACAAAA
63 TTTTAATATGAATAAACTTGTATGAAAAGAAACGATTGTTTTATGACAAAA
53827 TAAAAATCAT
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
136 13 0.13
137 85 0.85
138 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (136 bp):
AAACAAATTTTTTTTAAAATCTCCAACTTATTAATTTTTAGAATATTAATTAATTAGCATTATTT
TAATATGAATAAACTTGTATGAAAAGAAACGATTGTTTTATGACAAAACCTAATTATTTGAACTG
GTTTGT
Found at i:54252 original size:181 final size:180
Alignment explanation
Indices: 54065--54393 Score: 453
Period size: 181 Copynumber: 1.8 Consensus size: 180
54055 TTTGACTAAC
* * **
54065 AGATTTATTTTTTAAATCTCCTAC-CTACTAATTTTTAGAGTATTAATCAATTAGTATTATTTTA
1 AGATTTATTTTTAAAATCTCCTACTC-ACTAATTTTTAGAATATTAAGAAATTAGTATTATTTTA
* * *
54129 TTCCAAATAAACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAATATCATAACTATTT
65 TTCCAAATAAACTTGTATAAATAGAAACAATTGGTTTAGGACAAAA-AAAAGATCATAACTATTT
*
54194 GAAATAAATAATTGTTCAAACAATCATGACGATTTAAACTAACTTGGTAAAT
129 GAAATAAATAATTGTGCAAACAATCATGACGATTTAAACTAACTTGGTAAAT
* ** * *
54246 AGATTTATTTTTAAAATTTTTTACTCATTAATTTTTGGAATATTAAGAAATTAGTATTATTTTAT
1 AGATTTATTTTTAAAATCTCCTACTCACTAATTTTTAGAATATTAAGAAATTAGTATTATTTTAT
* * * * * *
54311 TTCAAATACATTTGTATAAATAGAAACAATTGGTTTATGACAAAATAAAGGTCATAACTATTTGA
66 TCCAAATAAACTTGTATAAATAGAAACAATTGGTTTAGGACAAAAAAAAGATCATAACTATTTGA
*
54376 AATAGATAATTGTGCAAA
131 AATAAATAATTGTGCAAA
54394 AAGTCATAAC
Statistics
Matches: 127, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
180 33 0.26
181 93 0.73
182 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (180 bp):
AGATTTATTTTTAAAATCTCCTACTCACTAATTTTTAGAATATTAAGAAATTAGTATTATTTTAT
TCCAAATAAACTTGTATAAATAGAAACAATTGGTTTAGGACAAAAAAAAGATCATAACTATTTGA
AATAAATAATTGTGCAAACAATCATGACGATTTAAACTAACTTGGTAAAT
Found at i:54513 original size:178 final size:180
Alignment explanation
Indices: 54113--54526 Score: 500
Period size: 178 Copynumber: 2.3 Consensus size: 180
54103 AGTATTAATC
* *
54113 AATTAGTATTATTTTATTCCAAATAAACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAA
1 AATTAGTATTATTTTATTTCAAAT-TACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAA
* * * *
54178 AATATCATAACTATTTGAAATAAATAATTGTTCAAACAATCATGACGATTTAAACTAACTTGGTA
65 AAGATCATAACTATTTGAAATAAATAATTGTGCAAACAATCATAACGATTTAAACTAACTTAGTA
* *
54243 AATAGATTTATTTTTAAAATTTTTTACTCATTAATTTTTGGAATATTAAGA
130 AATAGATTTAGTTTTAAAATTTTTTACTCATTAATTTTTGAAATATTAAGA
* * * *
54294 AATTAGTATTATTTTATTTCAAA-TACATTTGTATAAATAGAAACAATTGGTTTATGACAAAA-T
1 AATTAGTATTATTTTATTTCAAATTAC--TTGTATGAATAGAAACAATTGTTTTAGGACAAAACA
* * * * ***
54357 AAAGGTCATAACTATTTGAAATAGATAATTGTGCAAA-AAGTCATAACTATTTGAA-TGTGTTCA
64 AAAGATCATAACTATTTGAAATAAATAATTGTGCAAACAA-TCATAACGATTTAAACTAACTT-A
* * *
54420 G-AAATATATTTAGTTTTAAAA-TTTTTACTCATTAATTTTTGAAATGTTAATA
127 GTAAATAGATTTAGTTTTAAAATTTTTTACTCATTAATTTTTGAAATATTAAGA
* *
54472 AATTTA-TATTATTTTATTTGAAATTAGCTTGTTTGAATAGAAACAATTGTTTTAG
1 AA-TTAGTATTATTTTATTTCAAATTA-CTTGTATGAATAGAAACAATTGTTTTAG
54527 ATTTGAAATA
Statistics
Matches: 199, Mismatches: 27, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
178 69 0.35
179 30 0.15
180 47 0.24
181 53 0.27
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (180 bp):
AATTAGTATTATTTTATTTCAAATTACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAA
AGATCATAACTATTTGAAATAAATAATTGTGCAAACAATCATAACGATTTAAACTAACTTAGTAA
ATAGATTTAGTTTTAAAATTTTTTACTCATTAATTTTTGAAATATTAAGA
Found at i:54638 original size:14 final size:15
Alignment explanation
Indices: 54606--54646 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
54596 ATCTCCAACT
54606 TATTAATTT-TTAGAA
1 TATTAATTTATTA-AA
54621 TATTAATTTATT-AA
1 TATTAATTTATTAAA
*
54635 TATTATTTTATT
1 TATTAATTTATT
54647 TTGAATAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 13 0.54
15 9 0.38
16 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTAATTTATTAAA
Found at i:55227 original size:25 final size:25
Alignment explanation
Indices: 55186--55242 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
55176 ATTATATTCT
55186 ATAATT-TAAATATTATAATTTATA
1 ATAATTATAAATATTATAATTTATA
*
55210 ATGAATTATAAATA-TATAATTTTTA
1 AT-AATTATAAATATTATAATTTATA
55235 ATAATTAT
1 ATAATTAT
55243 TATTTAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 8 0.27
25 16 0.53
26 6 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
ATAATTATAAATATTATAATTTATA
Found at i:55344 original size:22 final size:22
Alignment explanation
Indices: 55318--55367 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
55308 TTATAATTTC
* *
55318 TAATTAGTACA-AATTAGTTAAT
1 TAATTAATACATAAATA-TTAAT
*
55340 TAATTAATATATAAATATTAAT
1 TAATTAATACATAAATATTAAT
55362 TAATTA
1 TAATTA
55368 TAGTATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
TAATTAATACATAAATATTAAT
Found at i:55359 original size:18 final size:17
Alignment explanation
Indices: 55338--55381 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
55328 AAATTAGTTA
55338 ATTAATTAATATATAAAT
1 ATTAATTAATATAT-AAT
*
55356 ATTAATTAAT-TATAGT
1 ATTAATTAATATATAAT
55372 ATTAA-TAATA
1 ATTAATTAATA
55382 ATTTATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 4 0.17
16 7 0.29
17 3 0.12
18 10 0.42
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
ATTAATTAATATATAAT
Found at i:55378 original size:22 final size:21
Alignment explanation
Indices: 55335--55389 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
55325 TACAAATTAG
55335 TTAATTAATTAATATATAAATA
1 TTAATTAATT-ATATATAAATA
*
55357 TTAATTAATTATAGTATTAATA
1 TTAATTAATTATA-TATAAATA
* *
55379 ATAATTTATTA
1 TTAATTAATTA
55390 ATTCAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTAATTAATTATATATAAATA
Found at i:56834 original size:181 final size:182
Alignment explanation
Indices: 56467--56864 Score: 475
Period size: 181 Copynumber: 2.2 Consensus size: 182
56457 AATCTTTTAA
* * * * * *
56467 TCATAATAATTTTAAATAGATAATTGTTTAAATAATCATAACTATTTGAACTTATTTAGTAAATA
1 TCATAATGATTTTAAATAGATAATTGTTCAAATAATCACAACTATTTGAACTGATTGAGTAAACA
* * * ** *
56532 GATTTATTTTTTCAAATCTTTTACTTATTAATTTTTAGAATGTTAATAAATTAGTATTTTTTTTA
66 AATTAACTTTTTCAAATCACTTACTTATTAATTTTTAGAATATTAATAAATTAG-ATTTTTTTTA
** * *
56597 TTTTGAATAATTTTGATTAAACAGAAAGAATTGTTTTATGAAAAAATAAAAGG
130 TTTTGAATAAGCTTGATTAAACAGAAACAATTGTTTTATGAAAAAACAAAAGG
* * *
56650 TCATAATGATTTGAAATAGATAATTGTTCAAATGGA-CACGACTATTTGAACTGATTCGA-TAAA
1 TCATAATGATTTTAAATAGATAATTGTTCAAAT-AATCACAACTATTTGAACTGATT-GAGTAAA
* *
56713 CAAATTAACTTTTT-AAATCACTTAGTTATTAATTTTTGGAATATTAATAAATTA-ATTTTATTT
64 CAAATTAACTTTTTCAAATCACTTACTTATTAATTTTTAGAATATTAATAAATTAGATTTT-TTT
* *
56776 TATTTTGAATAAGCTTG-TATAAACTA-AAACAATTGTTTTCTGACAAAACAAAAGG
128 TATTTTGAATAAGCTTGAT-TAAAC-AGAAACAATTGTTTTATGAAAAAACAAAAGG
* *
56831 TCATAATGATTTTAAACAGACAATTGTTCAAATA
1 TCATAATGATTTTAAATAGATAATTGTTCAAATA
56865 GTCGTAGCTA
Statistics
Matches: 183, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
180 6 0.03
181 78 0.43
182 36 0.20
183 61 0.33
184 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (182 bp):
TCATAATGATTTTAAATAGATAATTGTTCAAATAATCACAACTATTTGAACTGATTGAGTAAACA
AATTAACTTTTTCAAATCACTTACTTATTAATTTTTAGAATATTAATAAATTAGATTTTTTTTAT
TTTGAATAAGCTTGATTAAACAGAAACAATTGTTTTATGAAAAAACAAAAGG
Found at i:57679 original size:177 final size:177
Alignment explanation
Indices: 57240--58220 Score: 738
Period size: 177 Copynumber: 5.4 Consensus size: 177
57230 TTTACCTATC
* * *
57240 AAGTTTAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATCATTATGACATTTTGTTTTG
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACCTTTTGTTTTG
* * * * * *
57305 ACAAAAAATAATTGTTTTAGTTCATAAAAAGCTTATCTAAAATAAAATAATACTAATTTCTTAAT
66 TCATAAAATAATTG-TTTAATTCAT-ACAAGCTTAT-TCAAATAAAATAATACTAATTTATTAAT
*
57370 ATTTCAAAAATTAATAAGCAAGACTTTAAAAAAATTAATTTGTTTACTGAAT
128 ATTTCAAAAATTAATAAG--TGACTTTAAAAAAATTAATTTGTTTACTGAAT
* *
57422 AAATTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCTTTATGACCTTTTGTTTTG
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACCTTTTGTTTTG
*
57487 TCATAAAATAATTGTTTCAATTCATACAAGCTTATTCGAAATAAAATAATAGTAATTTATTAATA
66 TCATAAAATAATTGTTT-AATTCATACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATA
* *
57552 TTTCAAAAATTAATAAGTGA-TTT-AAATAA-TGATTCTGTTTACTGAAT
129 TTTCAAAAATTAATAAGTGACTTTAAAAAAATTAATT-TGTTTACTGAAT
* * * * * * * * *
57599 TAGTTCAAATAATTATGGCTATTTCAACAATTATCTATTTGAAATCAATATTACCTTTTGTTTAG
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACCTTTTGTTTTG
**
57664 TCATATAAA-AATTGTTTTTTATCATACAAGC---TTCAGAATAAAATAATACTAATTTATTAAT
66 TCATA-AAATAATTGTTTAAT-TCATACAAGCTTATTCA-AATAAAATAATACTAATTTATTAAT
* * * * * * *
57725 CTTTCAAAAGTTAATAAGTAAGAAATTT-AAAAAATAAATTTATTTACCGAAC
128 ATTTCAAAAATTAATAAGT--G-ACTTTAAAAAAATTAATTTGTTTACTGAAT
** * * * *
57777 CCGTTTAAATAGTTATGACTATTTGAACAAATGTATAGTTT-AAATCAGTTATTTAAAAAAAAAA
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATATA-TTTAAAATCA-TTA--T---------G
* * * * * * *
57841 ATCTTTTTTGTTCTGTCATAAAACAATTATTCATGTTCATACAAGCTTATTCAAAATACAATAAT
53 A-C-CTTTTGTTTTGTCATAAAATAATTGTTTA-ATTCATACAAGCTTATTC-AAATAAAATAAT
* * * * * * * *
57906 ACTAATCTAATAACACTCTGAAAATTAGTAACTAAGTGA-TTT-AAAAAATAAATTTGTTTGCTG
114 ACTAATTTATTAATA-TTTCAAAA--ATTAA-TAAGTGACTTTAAAAAAATTAATTTGTTTACTG
*
57969 AAC
175 AAT
* * * * * * * * * *
57972 CAGTTTAAATAGTTAAGATTATATGAATAATTATCTATTTTAAATCGTTATGACCTTTTATTTTG
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACCTTTTGTTTTG
* * * * *
58037 TTATAAAACAACTT-TTTCAATTCGTACTAGCTTATTCAGAATAAAATAA-AATGAATTTATTAA
66 TCATAAAATAA-TTGTTT-AATTCATACAAGCTTATTCA-AATAAAATAATACT-AATTTATTAA
** * * *
58100 TATTTCAAATTTTAATAAGAGA-TTT-AACAAA-TAATTCTGCTTACCT-AACT
127 TATTTCAAAAATTAATAAGTGACTTTAAAAAAATTAATT-TGTTTA-CTGAA-T
* * * * *
58150 -AGTTCAAATAATTATGATTATTTGAACAATTATTTATTTCAAATAATTATGACCTTTTGTTTTG
1 AAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACCTTTTGTTTTG
58214 TCATAAA
66 TCATAAA
58221 CAAATGTTTT
Statistics
Matches: 643, Mismatches: 112, Indels: 93
0.76 0.13 0.11
Matches are distributed among these distances:
173 1 0.00
174 44 0.07
176 10 0.02
177 175 0.27
178 62 0.10
179 10 0.02
180 9 0.01
181 108 0.17
182 82 0.13
183 1 0.00
190 1 0.00
191 4 0.01
192 30 0.05
193 1 0.00
194 6 0.01
195 82 0.13
196 8 0.01
197 1 0.00
198 3 0.00
199 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
AAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGACCTTTTGTTTTG
TCATAAAATAATTGTTTAATTCATACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATT
TCAAAAATTAATAAGTGACTTTAAAAAAATTAATTTGTTTACTGAAT
Found at i:58506 original size:16 final size:15
Alignment explanation
Indices: 58487--58564 Score: 61
Period size: 16 Copynumber: 4.9 Consensus size: 15
58477 AATTTAAAAA
58487 TATTATAATAATAATT
1 TATTATAAT-ATAATT
58503 TATTATAACTATAAATT
1 TATTATAA-TAT-AATT
*
58520 TA-AATAAT-TAATAT
1 TATTATAATATAAT-T
* *
58534 TATAATAATTATAAAT
1 TATTATAA-TATAATT
58550 TATTACTAATATAAT
1 TATTA-TAATATAAT
58565 AATTATGTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
13 3 0.06
14 4 0.08
15 6 0.12
16 25 0.49
17 13 0.25
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
TATTATAATATAATT
Found at i:58548 original size:25 final size:25
Alignment explanation
Indices: 58516--58570 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
58506 TATAACTATA
*
58516 AATT-TAAATAATTAATATTATAAT
1 AATTATAAATAATTAATAATATAAT
* *
58540 AATTATAAATTATTACTAATATAAT
1 AATTATAAATAATTAATAATATAAT
58565 AATTAT
1 AATTAT
58571 GTTTATTAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
AATTATAAATAATTAATAATATAAT
Found at i:58694 original size:18 final size:19
Alignment explanation
Indices: 58668--58719 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
58658 TTACATTAAA
*
58668 AAATATAATT-TTTTAATAT
1 AAATATAATTATATTAAT-T
58687 AAAT-TAATTATATTAATT
1 AAATATAATTATATTAATT
*
58705 AAATAGAATTATATT
1 AAATATAATTATATT
58720 CCAATAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
AAATATAATTATATTAATT
Found at i:58702 original size:19 final size:19
Alignment explanation
Indices: 58680--58738 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
58670 ATATAATTTT
58680 TTAATATAAATTAATTATA
1 TTAATATAAATTAATTATA
*
58699 TTAAT-TAAATAGAATTATA
1 TTAATATAAAT-TAATTATA
*
58718 TTCCA-ATAAATT-ATTATA
1 TT-AATATAAATTAATTATA
58736 TTA
1 TTA
58739 GTTATAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 13 0.39
19 14 0.42
20 6 0.18
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (19 bp):
TTAATATAAATTAATTATA
Found at i:58752 original size:16 final size:16
Alignment explanation
Indices: 58731--58765 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
58721 CAATAAATTA
* *
58731 TTATATTAGTTATAAT
1 TTATATTAATAATAAT
58747 TTATATTAATAATAAT
1 TTATATTAATAATAAT
58763 TTA
1 TTA
58766 AACAATAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
TTATATTAATAATAAT
Found at i:60001 original size:33 final size:34
Alignment explanation
Indices: 59954--60026 Score: 87
Period size: 33 Copynumber: 2.1 Consensus size: 34
59944 TAACAATATA
**
59954 TAATAATATTAATTTTACTATCTTA-TAAATATTAT
1 TAATAATA-TAATTTTACTATAATACTAAA-ATTAT
*
59989 TAATAATA-AATTTTATTATAATACTAAAATTAT
1 TAATAATATAATTTTACTATAATACTAAAATTAT
60022 TAATA
1 TAATA
60027 TTATTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 22 0.65
34 4 0.12
35 8 0.24
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (34 bp):
TAATAATATAATTTTACTATAATACTAAAATTAT
Found at i:60025 original size:15 final size:16
Alignment explanation
Indices: 59978--60026 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
59968 TTACTATCTT
59978 ATAAATATTATTAATA
1 ATAAATATTATTAATA
*
59994 ATAAATTTTATT-ATA
1 ATAAATATTATTAATA
*
60009 ATACTAAAATTATTAATA
1 ATA--AATATTATTAATA
60027 TTATTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 6 0.22
16 11 0.41
17 7 0.26
18 3 0.11
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAATATTATTAATA
Found at i:60062 original size:45 final size:42
Alignment explanation
Indices: 59976--60063 Score: 106
Period size: 42 Copynumber: 2.0 Consensus size: 42
59966 TTTTACTATC
*
59976 TTATAAATATTATTAATAATAAATTTTATTATAATACTAAAA
1 TTATAAATATTATTAATAATAAATTTTATAATAATACTAAAA
* *
60018 TTATTAATATTATTAA-AATTAAATTATTATGGAATAATATTAAAA
1 TTATAAATATTATTAATAA-TAAATT-TTAT--AATAATACTAAAA
60063 T
1 T
60064 ATGTAACTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
41 2 0.05
42 21 0.54
43 4 0.10
45 12 0.31
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (42 bp):
TTATAAATATTATTAATAATAAATTTTATAATAATACTAAAA
Found at i:60157 original size:13 final size:14
Alignment explanation
Indices: 60138--60177 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
60128 GTTTTGAAAA
60138 ATAATTAATTAATT
1 ATAATTAATTAATT
60152 -TAATTAA-TAATT
1 ATAATTAATTAATT
60164 ATAA-TAATTAATT
1 ATAATTAATTAATT
60177 A
1 A
60178 ATAACAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 8 0.33
13 16 0.67
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTAATTAATT
Found at i:60160 original size:20 final size:20
Alignment explanation
Indices: 60137--60181 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
60127 TGTTTTGAAA
*
60137 AATAATTA-ATTAATTTAATT
1 AATAATTATAATAA-TTAATT
60157 AATAATTATAATAATTAATT
1 AATAATTATAATAATTAATT
60177 AATAA
1 AATAA
60182 CAAAAGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATAATTATAATAATTAATT
Found at i:60210 original size:27 final size:27
Alignment explanation
Indices: 60167--60228 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
60157 AATAATTATA
*
60167 ATAATTAATTAATAACAA-AAGTATTGTT
1 ATAATT-ATTAAGAACAATAAGTATT-TT
*
60195 ATAATTATTAAGAACAATAATTATTTT
1 ATAATTATTAAGAACAATAAGTATTTT
*
60222 ATTATTA
1 ATAATTA
60229 AACTAATATC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 18 0.60
28 12 0.40
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (27 bp):
ATAATTATTAAGAACAATAAGTATTTT
Found at i:60657 original size:16 final size:16
Alignment explanation
Indices: 60613--60658 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
60603 TAAATCTAAT
60613 TTATTTATATAATTAAAA
1 TTATTTA-A-AATTAAAA
* *
60631 TTAATTGAAATTAAAA
1 TTATTTAAAATTAAAA
60647 TTATTTAAAATT
1 TTATTTAAAATT
60659 TTTGTTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 18 0.75
17 1 0.04
18 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
TTATTTAAAATTAAAA
Found at i:60976 original size:17 final size:17
Alignment explanation
Indices: 60954--60988 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
60944 CCATTTATGA
60954 AATATTAGA-TAATTAAT
1 AATATTA-ATTAATTAAT
60971 AATATTAATTAATTAAT
1 AATATTAATTAATTAAT
60988 A
1 A
60989 TTTTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.06
17 16 0.94
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AATATTAATTAATTAAT
Found at i:60981 original size:13 final size:14
Alignment explanation
Indices: 60963--61006 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
60953 AAATATTAGA
60963 TAATTAA-TAATAT
1 TAATTAATTAATAT
60976 TAATTAATTAATATT
1 TAATTAATTAATA-T
*
60991 TTATTAATTTAATAT
1 TAATTAA-TTAATAT
61006 T
1 T
61007 TTATCATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 7 0.26
14 5 0.19
15 9 0.33
16 6 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:61004 original size:16 final size:15
Alignment explanation
Indices: 60963--61010 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 15
60953 AAATATTAGA
*
60963 TAATTAATAATATTAAT
1 TAATTAAT-AT-TTTAT
60980 TAATTAATATTTTAT
1 TAATTAATATTTTAT
60995 TAATTTAATATTTTAT
1 TAA-TTAATATTTTAT
61011 CATTGATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 7 0.24
16 14 0.48
17 8 0.28
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTAATATTTTAT
Found at i:61134 original size:28 final size:30
Alignment explanation
Indices: 61074--61134 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
61064 TATTAAGATT
* **
61074 TTAATAATAATTATCTATAATTTTAATTTA
1 TTAATAATAATTATATATAATTTTAATAAA
61104 TTAA-AAT-ATTATATATAATTTTAATAAA
1 TTAATAATAATTATATATAATTTTAATAAA
61132 TTA
1 TTA
61135 TATCAATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 21 0.75
29 3 0.11
30 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (30 bp):
TTAATAATAATTATATATAATTTTAATAAA
Found at i:61300 original size:22 final size:22
Alignment explanation
Indices: 61250--61303 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
61240 TATTTGAATA
* *
61250 TTATTCTAATTTAAGTTTAAAT
1 TTATTTTAATTTAACTTTAAAT
*
61272 TT-GTTTAATTTAAACTTT-AAT
1 TTATTTTAATTT-AACTTTAAAT
61293 TTATTTTAATT
1 TTATTTTAATT
61304 ATTTTAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (22 bp):
TTATTTTAATTTAACTTTAAAT
Found at i:61772 original size:179 final size:181
Alignment explanation
Indices: 61399--61911 Score: 516
Period size: 179 Copynumber: 2.8 Consensus size: 181
61389 AATTATGATT
* * * * *
61399 ATGACAATTTGAACAATTATTTATTTGAAATCAG-TATAACCTTTTGTTTTATCATAAAATAAAT
1 ATGACAATTTGAATAATTATTTATTTCAAAT-AGTTATGACATTTTGTTTTGTCATAAAAT-AAT
* * *
61463 TTTTTTTGTTCATACAAGCTTGTCTCGAATAAAATAATATAAATTTATTAATATTAAGACAATTA
64 TGTTTTTGTTCATACAAGCTTATCTAGAATAAAATAATATAAATTTATTAATATTAAGACAATTA
* * * * *
61528 ATAAGTAAAAGATTTTAAAAATAAAATTGTTTATCAAATAAATTCAAATCGCT
129 ATAAGTAAAAGATTTAAAAAATAAAATTGTTTACCAAACAAATTCAAATAGCC
* * * *
61581 ATGACTATTTGAATAATTATTTATTTCAAATTGTTATGACTTTTTGTTTTGCCATAAAATAATTG
1 ATGACAATTTGAATAATTATTTATTTCAAATAGTTATGACATTTTGTTTTGTCATAAAATAATTG
* * * * **
61646 TTTTT-TTCATACAAGGTTATTTAGATTAAAATAATATTAATTTATTAAT-TTTTGACAATTAAT
66 TTTTTGTTCATACAAGCTTATCTAGAATAAAATAATATAAATTTATTAATATTAAGACAATTAAT
* * * *
61709 AAGTAGAAGATTTAAAAAAT-AAATATGTTTACCGAACAAGTTGAAATAGCC
131 AAGTAAAAGATTTAAAAAATAAAAT-TGTTTACCAAACAAATTCAAATAGCC
* ** * * *
61760 ATGACAATTTGAATAATGAACTATTTCAAATCA-TTATGTCATTTTGTTTTGTAATAAAACAATT
1 ATGACAATTTGAATAATTATTTATTTCAAAT-AGTTATGACATTTTGTTTTGTCATAAAATAATT
** * * * * * * *
61824 GTTTCAGTTCAAATAAGCTTAT-TTGAAATAAAAAAAAATACTAATTTATTAATATTATGAAAAT
65 GTTTTTGTTCATACAAGCTTATCTAG-AATAAAATAATATA--AATTTATTAATATTAAGACAAT
* * *
61888 TAATGAGTAAGAGAATTAAAAAAT
127 TAATAAGTAAAAGATTTAAAAAAT
61912 GAATCTATTT
Statistics
Matches: 271, Mismatches: 52, Indels: 15
0.80 0.15 0.04
Matches are distributed among these distances:
178 4 0.01
179 108 0.40
180 60 0.22
181 10 0.04
182 61 0.23
183 28 0.10
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (181 bp):
ATGACAATTTGAATAATTATTTATTTCAAATAGTTATGACATTTTGTTTTGTCATAAAATAATTG
TTTTTGTTCATACAAGCTTATCTAGAATAAAATAATATAAATTTATTAATATTAAGACAATTAAT
AAGTAAAAGATTTAAAAAATAAAATTGTTTACCAAACAAATTCAAATAGCC
Found at i:63425 original size:11 final size:11
Alignment explanation
Indices: 63395--63432 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
63385 AATTTATTTT
63395 TTAAAT-TTAA
1 TTAAATATTAA
63405 TTAAA-A-TAA
1 TTAAATATTAA
63414 TTAAATATTAA
1 TTAAATATTAA
63425 TTAAATAT
1 TTAAATAT
63433 ATGACTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.32
10 6 0.24
11 11 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TTAAATATTAA
Found at i:63845 original size:180 final size:174
Alignment explanation
Indices: 63530--64194 Score: 470
Period size: 180 Copynumber: 3.7 Consensus size: 174
63520 ACAAACAATG
* * * * *
63530 AATTTATTAATATTTTAAAACTTAAGAAGTAAGAAATTTAAAAAGT-AA-AACTGTCTACTAAAC
1 AATTTATTAATATTTTAAAA-TTAATAAGTAA-AGATTTAAAAAATGAATAATTGAC--CT-AAC
* * * * * * * * *
63593 CAGTTCAATTAGTTATAATTATTTGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTG
61 CAGTACAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTA
*
63658 TCATAAAATAATTATTTTTGTTCATAC-AGTCTTATTCAGAATAAAGTAATACT
126 CCATAAAA-AA--ATTTTTGTTCATACAAG-CTTATTCAGAATAAA-TAATACT
* *
63711 AATTTATTAATATTTTAAAATTAATAAGTAATAGATTTAAAAAATGAATCAATTGGCCTGACCAG
1 AATTTATTAATATTTTAAAATTAATAAGTAA-AGATTTAAAAAATGAAT-AATTGACCTAACCAG
*
63776 TGCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCA
64 TACAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCA
* * * *
63841 TAAAAAAATTGTTTGTATCTATACTAGCTTATT-TGAAATACTATAATTCT
129 TAAAAAAATT-TTTGT-TC-ATACAAGCTTATTCAG-AATA-AATAATACT
* * ** * * * *
63891 ATTTTATTAATATTCTAAAAATTAATAAG---AGATTTAAAAAATGAATTTGTTTATCAAACAAG
1 AATTTATTAATATT-TTAAAATTAATAAGTAAAGATTTAAAAAATGAA-TAATTGACCTAACCAG
* * * ** * * *
63953 TACAAATAATTATGACTATTTGAATAATTATCTATTTCTAGTCGCTATAACCTTTTATTTTGTCC
64 TACAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT-ACC
* * *
64018 -TAAAACAAAATTTTCTATTCATACAAGCTTATTTCA-AATAAAATTATACA
128 AT-AAA-AAAATTTT-TGTTCATACAAGCTTA-TTCAGAAT-AAATAATACT
* * * * * * * **
64068 AATTTATTAATA-TTCAGACAACTAATAAGTAAAAGATTTAAAAAATAAATTTATTTATCGAATA
1 AATTTATTAATATTTTA-A-AATTAATAAGT-AAAGATTTAAAAAATGAA-TAATTGACCTAACC
** * * ** *
64132 AGTTTAAATAATTATGACTATTTGAACAATTA-CTTATTTCAAATTGTTATGACTTTTTGTTTT
62 AGTACAAATAGTTATGACTATTTGAATAATTATC-TATTTCAAATCATTATGACCTTTTGTTTT
64195 CTCACGACTC
Statistics
Matches: 396, Mismatches: 63, Indels: 50
0.78 0.12 0.10
Matches are distributed among these distances:
175 2 0.01
176 2 0.01
177 118 0.30
178 18 0.05
179 13 0.03
180 120 0.30
181 118 0.30
183 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (174 bp):
AATTTATTAATATTTTAAAATTAATAAGTAAAGATTTAAAAAATGAATAATTGACCTAACCAGTA
CAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCATA
AAAAAATTTTTGTTCATACAAGCTTATTCAGAATAAATAATACT
Found at i:63983 original size:177 final size:175
Alignment explanation
Indices: 63612--64194 Score: 500
Period size: 177 Copynumber: 3.3 Consensus size: 175
63602 TAGTTATAAT
* * * ** *
63612 TATTTGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAATAATTATTTTT
1 TATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCATAAAACAA--ATTTTT
*
63677 GT-TC-ATACAGTCTTA-TTCAGAATAAAGTAATACTAATTTATTAATATT-TTAAAATTAATAA
64 GTATCTATACAG-CTTATTTCA-AATAAA-TAATACTAATTTATTAATATTCTAAAAATTAATAA
** *** ** * * *
63738 GTAATAGATTTAAAAAATGAATCAATTGGCCTGACCAGTGCAAATAGTTATGAC
126 G----AGATTTAAAAAATGAATTTATTTATCAAACAAGTACAAATAATTATGAC
*
63792 TATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCATAAAA-AAATTGTTTG
1 TATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCATAAAACAAATT-TTTG
* * * *
63856 TATCTATACTAGCTTATTTGAAATACTATAATTCTATTTTATTAATATTCTAAAAATTAATAAGA
65 TATCTATAC-AGCTTATTTCAAATA-AATAATACTAATTTATTAATATTCTAAAAATTAATAAGA
*
63921 GATTTAAAAAATGAATTTGTTTATCAAACAAGTACAAATAATTATGAC
128 GATTTAAAAAATGAATTTATTTATCAAACAAGTACAAATAATTATGAC
* * * ** * * * * *
63969 TATTTGAATAATTATCTATTTCTAGTCGCTATAACCTTTTATTTTGTCC-TAAAACAAAATTTTC
1 TATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT-ACCATAAAACAAATTTTTG
* * *
64033 TAT-TCATACAAGCTTATTTCAAATAAAATTATACAAATTTATTAATATTC-AGACAACTAATAA
65 TATCT-ATAC-AGCTTATTTCAAAT-AAATAATACTAATTTATTAATATTCTA-A-AA--ATTAA
* * * * **
64096 GTAAAAGATTTAAAAAATAAATTTATTTATCGAATAAGTTTAAATAATTATGAC
123 -TAAGAGATTTAAAAAATGAATTTATTTATCAAACAAGTACAAATAATTATGAC
** *
64150 TATTTGAACAATTA-CTTATTTCAAATTGTTATGACTTTTTGTTTT
1 TATTTGAACAATTATC-TATTTCAAATCATTATGACCTTTTGTTTT
64195 CTCACGACTC
Statistics
Matches: 332, Mismatches: 54, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
176 2 0.01
177 128 0.39
178 14 0.04
179 4 0.01
180 84 0.25
181 100 0.30
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (175 bp):
TATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTACCATAAAACAAATTTTTGT
ATCTATACAGCTTATTTCAAATAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGAGAT
TTAAAAAATGAATTTATTTATCAAACAAGTACAAATAATTATGAC
Found at i:63989 original size:16 final size:17
Alignment explanation
Indices: 63957--63989 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63947 AACAAGTACA
63957 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
63975 AATAATTAT-CTATTT
1 AATAATTATACTATTT
63990 CTAGTCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Done.