genome.fa.s600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168425.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20930

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2134--2186	26	2.0	26	85	7	72	30	22	16	30	1.96
2696--2748	26	2.0	26	88	0	79	30	26	16	26	1.97
2730--3221	157	3.1	155	76	4	464	19	27	29	24	1.98
4355--4799	157	2.8	154	78	8	432	18	27	30	23	1.98
4771--4823	26	2.0	26	92	0	88	28	24	18	28	1.98
5600--5652	26	2.0	26	88	0	79	28	26	18	26	1.98
6642--6694	26	2.0	26	88	0	79	28	26	18	26	1.98
6270--6892	346	1.8	346	82	2	822	21	25	28	23	1.99
6668--7487	159	5.2	158	75	5	596	19	27	30	23	1.98
6668--7487	317	2.6	316	83	3	1004	19	27	30	23	1.98
7460--7512	26	2.0	26	89	7	81	26	22	20	30	1.98
8227--8721	158	3.1	158	76	7	416	20	27	28	22	1.99
8695--8747	26	2.0	26	89	7	81	28	24	16	30	1.97
9563--9615	26	2.0	26	85	7	72	28	20	20	30	1.98
10412--10857	195	2.3	197	84	3	562	21	26	28	23	1.99
10986--11331	159	2.2	159	81	3	383	20	26	28	23	1.99
11544--12126	315	1.8	317	84	3	807	20	26	28	24	1.99
11525--12138	160	3.9	158	75	5	497	20	26	28	24	1.99
12112--12164	26	2.0	26	92	0	88	28	28	18	24	1.98
13132--13184	26	2.0	26	82	7	63	35	24	15	24	1.94
13660--13709	26	1.9	26	88	8	75	26	24	20	30	1.98
14156--14208	26	2.0	26	92	7	90	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14971--15409	158	2.8	156	75	11	369	17	27	31	23	1.97
15388--15440	26	2.0	26	85	7	72	26	20	22	30	1.98
16155--16648	158	3.1	154	77	10	512	18	27	30	23	1.98
16622--16674	26	2.0	26	85	7	72	28	22	18	30	1.98
17423--17855	159	2.8	156	79	8	443	16	27	31	24	1.96
17834--17886	26	2.0	26	85	7	72	26	20	22	30	1.98
18560--18616	26	2.1	27	78	12	64	24	26	15	33	1.95
18893--18946	26	2.1	26	92	0	90	25	27	20	25	1.99
19356--19408	26	2.0	26	85	7	72	28	18	20	32	1.97
20061--20113	26	2.0	26	92	0	88	28	28	18	24	1.98
20246--20298	26	2.0	26	82	7	63	32	22	16	28	1.96

Tables:   1

The End!