Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168439.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_651, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20629
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34


Found at i:9061 original size:18 final size:18

Alignment explanation


    Indices: 9038--9075  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       9028 CATTATGTGA

                              
       9038 GCACCATAGAGCCTATTG
          1 GCACCATAGAGCCTATTG

                              
       9056 GCACCATAGAGCCTATTG
          1 GCACCATAGAGCCTATTG

              
       9074 GC
          1 GC

       9076 CTAGGTGCTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21


Consensus pattern (18 bp):   
GCACCATAGAGCCTATTG

Found at i:10229 original size:167 final size:167

Alignment explanation


    Indices: 9953--10289  Score: 647
    Period size: 167  Copynumber: 2.0  Consensus size: 167

       9943 ATGCTAGAAG

                                                                             
       9953 ATGGTTACTTAAGGAGACTCAATGTGGCACACCTCTATACGAGTTCTTATAGAGTTGGTGCTCAA
          1 ATGGTTACTTAAGGAGACTCAATGTGGCACACCTCTATACGAGTTCTTATAGAGTTGGTGCTCAA

                                                                             
      10018 GACTTTAGTGCTTGTGAGTAATAAATTAGTGCTTAAGGCCACTTAGAGATGTGTAGGCTAGTGAT
         66 GACTTTAGTGCTTGTGAGTAATAAATTAGTGCTTAAGGCCACTTAGAGATGTGTAGGCTAGTGAT

                                                 
      10083 GTGATGAAGTTGGGTTCCTCTCACAACGAGTTTGGGA
        131 GTGATGAAGTTGGGTTCCTCTCACAACGAGTTTGGGA

                                *                                            
      10120 ATGGTTACTTAAGGAGACTCGATGTGGCACACCTCTATACGAGTTCTTATAGAGTTGGTGCTCAA
          1 ATGGTTACTTAAGGAGACTCAATGTGGCACACCTCTATACGAGTTCTTATAGAGTTGGTGCTCAA

                  *                                        *                 
      10185 GACTTTGGTGCTTGTGAGTAATAAATTAGTGCTTAAGGCCACTTAGATATGTGTAGGCTAGTGAT
         66 GACTTTAGTGCTTGTGAGTAATAAATTAGTGCTTAAGGCCACTTAGAGATGTGTAGGCTAGTGAT

                                                 
      10250 GTGATGAAGTTGGGTTCCTCTCACAACGAGTTTGGGA
        131 GTGATGAAGTTGGGTTCCTCTCACAACGAGTTTGGGA

               
      10287 ATG
          1 ATG

      10290 CCACCGATGA


Statistics
Matches: 167,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 167  167  1.00

ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32


Consensus pattern (167 bp):   
ATGGTTACTTAAGGAGACTCAATGTGGCACACCTCTATACGAGTTCTTATAGAGTTGGTGCTCAA
GACTTTAGTGCTTGTGAGTAATAAATTAGTGCTTAAGGCCACTTAGAGATGTGTAGGCTAGTGAT
GTGATGAAGTTGGGTTCCTCTCACAACGAGTTTGGGA

Found at i:12178 original size:24 final size:24

Alignment explanation


    Indices: 12151--12209  Score: 68
    Period size: 24  Copynumber: 2.5  Consensus size: 24

      12141 AATTTTTATC

                               *     
      12151 TATAACAAAATT-AAAAATTAAAAA
          1 TATAA-AAAATTCAAAAATAAAAAA

                         *           
      12175 TATAAAAAATATCTAAAATAAAAAA
          1 TATAAAAAAT-TCAAAAATAAAAAA

                       
      12200 T-TAAAAAATT
          1 TATAAAAAATT

      12210 TTACTTTTCT


Statistics
Matches: 31,  Mismatches: 2, Indels: 5
        0.82            0.05        0.13

Matches are distributed among these distances:
  23    6  0.19
  24   14  0.45
  25   11  0.35

ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27


Consensus pattern (24 bp):   
TATAAAAAATTCAAAAATAAAAAA

Found at i:17450 original size:39 final size:38

Alignment explanation


    Indices: 17341--17472  Score: 149
    Period size: 39  Copynumber: 3.4  Consensus size: 38

      17331 GATTGGATGG

                                *             *    
      17341 GGTGGGGA-GGATTGGGTGTTGTGGGGCGTTTGGGGGAA
          1 GGTGGGGAGGGATTGGGTGTGGTGGGGCG-TTGGAGGAA

                    **                             
      17379 GGTGGGGAAAGATTGGGTGTGGTGGGGCGTTGGAAGGAA
          1 GGTGGGGAGGGATTGGGTGTGGTGGGGCGTTGG-AGGAA

                                      **            
      17418 GGTGGGGAGGGATTGGGTGTGGTGGGATGTTGGGAGGTAA
          1 GGTGGGGAGGGATTGGGTGTGGTGGGGCGTT-GGAGG-AA

               * *         
      17458 GGTAGAGAGGGATTG
          1 GGTGGGGAGGGATTG

      17473 ATGGGGTGGG


Statistics
Matches: 81,  Mismatches: 9, Indels: 6
        0.84            0.09        0.06

Matches are distributed among these distances:
  38   12  0.15
  39   52  0.64
  40   17  0.21

ACGTcount: A:0.17, C:0.02, G:0.58, T:0.23


Consensus pattern (38 bp):   
GGTGGGGAGGGATTGGGTGTGGTGGGGCGTTGGAGGAA

Found at i:17987 original size:26 final size:26

Alignment explanation


    Indices: 17959--18007  Score: 82
    Period size: 25  Copynumber: 1.9  Consensus size: 26

      17949 TAAAAAATAA

                    *                 
      17959 AAAATATAGGTTTGAAAA-TTTTATT
          1 AAAATATAAGTTTGAAAACTTTTATT

                                    
      17984 AAAATATAAGTTTGAAAACTTTTA
          1 AAAATATAAGTTTGAAAACTTTTA

      18008 ATTTTTAAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  25   17  0.77
  26    5  0.23

ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41


Consensus pattern (26 bp):   
AAAATATAAGTTTGAAAACTTTTATT

Found at i:20206 original size:16 final size:16

Alignment explanation


    Indices: 20177--20214  Score: 51
    Period size: 18  Copynumber: 2.3  Consensus size: 16

      20167 TTATGAAGTC

                              
      20177 AAAAAAATCATTTTGCAA
          1 AAAAAAAT-ATTTTG-AA

                            
      20195 AAAAAAAT-TTTTGAA
          1 AAAAAAATATTTTGAA

                 
      20210 AAAAA
          1 AAAAA

      20215 GCAGGTGATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    7  0.35
  16    5  0.25
  18    8  0.40

ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26


Consensus pattern (16 bp):   
AAAAAAATATTTTGAA
Done.