Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168441.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20555
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:1941 original size:20 final size:20

Alignment explanation


    Indices: 1902--1941  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1892 ATGAGATGTG

                   *     * *    
       1902 GTGGTCAGTAGACTAGAACA
          1 GTGGTCAATAGACCAAAACA

                                
       1922 GTGGTCAATAGACCAAAACA
          1 GTGGTCAATAGACCAAAACA

       1942 ATGTGCAGTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17


Consensus pattern (20 bp):   
GTGGTCAATAGACCAAAACA

Found at i:12543 original size:45 final size:45

Alignment explanation


    Indices: 12494--12594  Score: 112
    Period size: 45  Copynumber: 2.2  Consensus size: 45

      12484 TAGCGCAAGT

                 *         *     **  **    *             
      12494 TGGCCTTTGGTATGGGCACTTGGCTTGACCATCATTGGCATAAGC
          1 TGGCCCTTGGTATGGACACTTACCTCAACCAACATTGGCATAAGC

                    *         *                       *  
      12539 TGGCCCTTCGTATGGACATTTACCTCAACCAACATTGGCATATGC
          1 TGGCCCTTGGTATGGACACTTACCTCAACCAACATTGGCATAAGC

                       
      12584 TGGCCCTTGGT
          1 TGGCCCTTGGT

      12595 GTGAGCACAT


Statistics
Matches: 45,  Mismatches: 11, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  45   45  1.00

ACGTcount: A:0.19, C:0.26, G:0.25, T:0.31


Consensus pattern (45 bp):   
TGGCCCTTGGTATGGACACTTACCTCAACCAACATTGGCATAAGC

Found at i:12650 original size:44 final size:43

Alignment explanation


    Indices: 12593--12713  Score: 161
    Period size: 44  Copynumber: 2.8  Consensus size: 43

      12583 CTGGCCCTTG

                                  *    *                
      12593 GTGTGAGCACATGCCTCGATCAGCATTAGCATAATCTAGACCTA
          1 GTGTGAGCACATGCCTCGATCAACATTGGCATAATCTAGA-CTA

                 *  *       *   *                     *
      12637 GTGTGGGCGCATGCCTTGATTAACATTGGCATAATCTAGACTT
          1 GTGTGAGCACATGCCTCGATCAACATTGGCATAATCTAGACTA

               *                              
      12680 GTGCGAGCACATGCCTCGATCAACATTGGCATAA
          1 GTGTGAGCACATGCCTCGATCAACATTGGCATAA

      12714 GATGGCCCTT


Statistics
Matches: 65,  Mismatches: 12, Indels: 1
        0.83            0.15        0.01

Matches are distributed among these distances:
  43   31  0.48
  44   34  0.52

ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26


Consensus pattern (43 bp):   
GTGTGAGCACATGCCTCGATCAACATTGGCATAATCTAGACTA

Found at i:12706 original size:43 final size:44

Alignment explanation


    Indices: 12597--12713  Score: 155
    Period size: 43  Copynumber: 2.7  Consensus size: 44

      12587 CCCTTGGTGT

                              *    *                   *
      12597 GAGCACATGCCTCGATCAGCATTAGCATAATCTAGACCTAGTGT
          1 GAGCACATGCCTCGATCAACATTGGCATAATCTAGACCTAGTGC

             *  *       *   *                      *    
      12641 GGGCGCATGCCTTGATTAACATTGGCATAATCTAGA-CTTGTGC
          1 GAGCACATGCCTCGATCAACATTGGCATAATCTAGACCTAGTGC

                                          
      12684 GAGCACATGCCTCGATCAACATTGGCATAA
          1 GAGCACATGCCTCGATCAACATTGGCATAA

      12714 GATGGCCCTT


Statistics
Matches: 61,  Mismatches: 12, Indels: 1
        0.82            0.16        0.01

Matches are distributed among these distances:
  43   31  0.51
  44   30  0.49

ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26


Consensus pattern (44 bp):   
GAGCACATGCCTCGATCAACATTGGCATAATCTAGACCTAGTGC
Done.