Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168443.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20505
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Found at i:245 original size:22 final size:22
Alignment explanation
Indices: 220--268 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
210 ATTAATATTC
220 AAAAATTAATAACTAAGTGATT
1 AAAAATTAATAACTAAGTGATT
242 AAAAATTAATAACTAAGTGATT
1 AAAAATTAATAACTAAGTGATT
*
264 TAAAA
1 AAAAA
269 CGTCAGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (22 bp):
AAAAATTAATAACTAAGTGATT
Found at i:661 original size:16 final size:18
Alignment explanation
Indices: 630--670 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
620 CACAGTTATT
630 AATTATTAATTAAAAATA
1 AATTATTAATTAAAAATA
648 AATTA-TAA-TAAAAATA
1 AATTATTAATTAAAAATA
*
664 AACTATT
1 AATTATT
671 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 12 0.57
17 4 0.19
18 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATTAATTAAAAATA
Found at i:1590 original size:16 final size:18
Alignment explanation
Indices: 1559--1599 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
1549 CACAATTATT
1559 AATTATTAATTAAAAATA
1 AATTATTAATTAAAAATA
1577 AATTA-TAA-TAAAAATA
1 AATTATTAATTAAAAATA
*
1593 AACTATT
1 AATTATT
1600 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 12 0.57
17 4 0.19
18 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATTAATTAAAAATA
Found at i:1696 original size:20 final size:19
Alignment explanation
Indices: 1671--1710 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1661 TTCATAATTA
1671 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
1691 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
1710 A
1 A
1711 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:1898 original size:17 final size:16
Alignment explanation
Indices: 1858--1907 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
1848 ATCTATACAG
1858 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
1873 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
1887 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
1905 TTA
1 TTA
1908 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:2269 original size:16 final size:16
Alignment explanation
Indices: 2248--2281 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
2238 ATTTGAAATA
2248 AATAATTATGGCCTTG
1 AATAATTATGGCCTTG
2264 AATAATTATGGCCTTG
1 AATAATTATGGCCTTG
2280 AA
1 AA
2282 ATAACTAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (16 bp):
AATAATTATGGCCTTG
Found at i:3235 original size:17 final size:18
Alignment explanation
Indices: 3204--3245 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
3194 CACAATTATT
*
3204 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
3222 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
3239 AACTATT
1 AATTATT
3246 TGTTATGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:4150 original size:17 final size:18
Alignment explanation
Indices: 4119--4160 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
4109 CACAGTTATT
*
4119 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
4137 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
4154 AACTATT
1 AATTATT
4161 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:5054 original size:17 final size:18
Alignment explanation
Indices: 5032--5072 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
5022 CACAGTTATT
*
5032 AATTATTAAT-TAAAATA
1 AATTATTAATAAAAAATA
5049 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
5066 AACTATT
1 AATTATT
5073 TGTTATGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 4 0.20
17 15 0.75
18 1 0.05
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:5999 original size:17 final size:18
Alignment explanation
Indices: 5968--6009 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
5958 CACAATTATT
*
5968 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
5986 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
6003 AACTATT
1 AATTATT
6010 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:6098 original size:17 final size:17
Alignment explanation
Indices: 6076--6120 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
6066 ATTTATTCCT
*
6076 AATTAATAAATAATTAA
1 AATTAATAAATAATAAA
*
6093 AATTAATATAAATCATAAA
1 AATT-A-ATAAATAATAAA
6112 AATTAATAA
1 AATTAATAA
6121 TTATATTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 8 0.33
18 2 0.08
19 14 0.58
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTAATAAATAATAAA
Found at i:6103 original size:19 final size:19
Alignment explanation
Indices: 6081--6119 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
6071 TTCCTAATTA
*
6081 ATAAATAATTAAAATTAAT
1 ATAAATAATAAAAATTAAT
*
6100 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
6119 A
1 A
6120 ATTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:6308 original size:17 final size:16
Alignment explanation
Indices: 6268--6317 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
6258 ATCTATACAG
6268 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
6283 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
6297 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
6315 TTA
1 TTA
6318 ATAAAACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:7221 original size:16 final size:17
Alignment explanation
Indices: 7200--7232 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7190 ATTGAATTTC
7200 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
7216 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
7233 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:7693 original size:22 final size:22
Alignment explanation
Indices: 7655--7696 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7645 GAATGTTAAT
*
7655 AATTAAAAGTTTTAAATATTTA
1 AATTAAAAGTTTAAAATATTTA
7677 AATTAAAA-TATTAAAATATT
1 AATTAAAAGT-TTAAAATATT
7697 ATTAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATTAAAAGTTTAAAATATTTA
Found at i:9025 original size:17 final size:18
Alignment explanation
Indices: 8994--9035 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
8984 CACAGTTATC
*
8994 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
9012 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
9029 AACTATT
1 AATTATT
9036 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:9951 original size:17 final size:18
Alignment explanation
Indices: 9920--9961 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
9910 CACAATTATT
*
9920 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
9938 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
9955 AACTATT
1 AATTATT
9962 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:10056 original size:20 final size:19
Alignment explanation
Indices: 10031--10070 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
10021 ATTCTAATTA
10031 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
10051 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
10070 A
1 A
10071 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:10172 original size:21 final size:20
Alignment explanation
Indices: 10128--10172 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
10118 TACTATTATC
*
10128 TAATTTATCATAAATAAATT
1 TAATTTATCATAAATAAATA
*
10148 TAATTTATCTATAAATATATA
1 TAATTTATC-ATAAATAAATA
10169 TAAT
1 TAAT
10173 AATAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATTTATCATAAATAAATA
Found at i:10386 original size:16 final size:18
Alignment explanation
Indices: 10365--10410 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 18
10355 TATTTCTTGG
10365 TTATAATTATT-T-ATTA
1 TTATAATTATTATAATTA
*
10381 TTATAAATACTTATAATTA
1 TTATAATTA-TTATAATTA
10400 TTATTAATTAT
1 TTA-TAATTAT
10411 CTGGAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 8 0.33
17 2 0.08
18 1 0.04
19 8 0.33
20 5 0.21
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATAATTATTATAATTA
Found at i:10407 original size:10 final size:9
Alignment explanation
Indices: 10365--10410 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 9
10355 TATTTCTTGG
10365 TTATAATTA
1 TTATAATTA
10374 TT-T-ATTA
1 TTATAATTA
*
10381 TTATAAATA
1 TTATAATTA
10390 CTTATAATTA
1 -TTATAATTA
10400 TTATTAATTA
1 TTA-TAATTA
10410 T
1 T
10411 CTGGAATTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
7 6 0.19
8 2 0.06
9 8 0.26
10 15 0.48
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (9 bp):
TTATAATTA
Found at i:10444 original size:929 final size:911
Alignment explanation
Indices: 8429--10248 Score: 2665
Period size: 907 Copynumber: 2.0 Consensus size: 911
8419 CTTTTTGTCA
* * * *
8429 TAAAACAATTGATTTTCAACTTATAAACTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
1 TAAAACAATTGATTTTAAACTTATAAGCTTATTTGAAACAAAATAATACTAAATATTTAATACTT
* * * *
8494 CAAGAATTAGTAAGAGATTTAAAAAATAAATTTATTTACCAAACCGGTTTAAATAATTATGACCA
66 -AAGAATTAGTAAAAGATTTAAAAAATAAATTGATTTA-C--ACCGGTTTAAATAATTATAAACA
* *
8559 CCTCAAATAGTTATTACTA-T--TTG---------A-A---C--A--ATTATAAATAAAAAAAGG
127 CTTCAAATAGTTATTACTACTAATTGAACAATTAAATATTTCAAATTATTATAAATAAAAAAAGC
* * * *
8604 CATATAGATAATAATTATGATTTAAAACGTCAGATTTTGTTTCTGAACAATTTTGGGCTTAAAAA
192 CATATAGATAATAATTATGATTTAAAACATCAGACTTTGTTTCTAAACAATTCTGGGCTTAAAAA
8669 CCATTCGCACAATTATTGCACGATTTTAATTTTTCACTGTATTTCATACTTATTTGCTTTTAGAT
257 CCATTCGCACAATTATTGCACGATTTTAATTTTTCACTGTATTTCATACTTATTTGCTTTTAGAT
8734 ACATTTTTAGGTGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGA
322 ACATTTTTAGGTGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGA
*
8799 AATTTCAAATATTAGTATCTTATTATTTAAAATTAAACAAATTGATACTTAAATTAGAATAATAT
387 AATTTCAAATATTAGTATCTTATTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATAT
8864 TCAAATAGTTATGAATATTTGAATGCATTAACATAACCATATTTATTGTTATAAATAATTTTTAA
452 TCAAATAGTTATGAATATTTGAATGCATTAACATAACCATATTTATTGTTATAAATAATTTTTAA
*
8929 TTAGCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATC
517 TTAGCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATC
8994 AATTATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATAA
582 AATTATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATAA
*
9059 ATTTATATGCTATCCAATAAATTTATTTATAATTAAAAATTAATATAAATCTTAAAAATTAATAT
647 ATTTATATGCAATCCAATAAATTTATTTATAATT--AAATTAATATAAA-CTTAAAAATTAATA-
** * * *
9124 TTAAATATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTTAATTTTGTCCTGAGATCTT
708 TTAAATA---TTAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCATGAGATCTT
9189 ATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTAATAAAATAT
770 ATATCTACTATTATCTAATTTATCATAAATAAA-TT-ATT-AAATT--ATTATCTAATAAAATAT
*
9254 ATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTATAATTAATTT
830 ATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGCTATAATTAATTT
9319 AATTAAATAATTTTAAT
895 AATTAAATAATTTTAAT
* * *
9336 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
1 TAAAACAATTGATTTTAAACTTATAAGCTTATTTGAAACAAAATAATACTAAATATTTAATACTT
*
9401 CAAGAATTAGTAAAAGATTTAAAAAATAAATTGATTTACCAAACCGGTTTAAATAATTATAACCA
66 -AAGAATTAGTAAAAGATTTAAAAAATAAATTGATTTA-C--ACCGGTTTAAATAATTATAAACA
* * **
9466 GTTCAAATAGTTATTACTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGC
127 CTTCAAATAGTTATTACTACTAATTGAACAATTAAATATTTCAAATTATTATAAATAAAAAAAGC
9531 CATATAGATAATAATTATGATTTAAAACATCAGACTTTGTTTTGCTAAACAATTCTGGGCTTAAA
192 CATATAGATAATAATTATGATTTAAAACATCAGACTTTG-TTT-CTAAACAATTCTGGGCTTAAA
* * *
9596 AACCATTCGCACAATTATTGCGCGATTTTAATTTTTCATTGTGTTTCATACTTATTTGCTTTTAG
255 AACCATTCGCACAATTATTGCACGATTTTAATTTTTCACTGTATTTCATACTTATTTGCTTTTAG
* *
9661 ATACATTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTAT-CAATGATGGAATTTTTT
320 ATACATTTTTAGGTGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTA
*
9725 GAAATTTCAAATATTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAAT
385 GAAATTTCAAATATTAGTATCTTATTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAAT
* *
9790 ATTCAAATAGTTATGAATATTT-AATGCATTGACATAACTATATTTATTGTTATAAATAATTTTT
450 ATTCAAATAGTTATGAATATTTGAATGCATTAACATAACCATATTTATTGTTATAAATAATTTTT
9854 AATTAGCTACTTAATAAATCAAATAATATATAT-TTTAACAAAATAGCTACAATTAACACAATTA
515 AATTAGCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTA
*
9918 TTAATTATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATAT
580 TCAATTATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATA-
*
9983 TACGTAATTATATAATTTATAAGCAATCCAATAAATTTA-TTCTAATT-AA-TAA-AT-AA-TTA
644 TA---AA-T-T-T-A--TAT--GCAATCCAATAAATTTATTTATAATTAAATTAATATAAACTTA
*
10042 AAAATTAATA-TAAATCA-TAAAAATTAATAATTATATTATTAATAAAAGCTTTAAATTTGTCAT
698 AAAATTAATATTAAAT-ATTAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCAT
10105 GAGATCTTATATCTACTATTATCTAATTTATCATAAATAAA-T-TT-AA-T-TTATCT-AT-AAA
762 GAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTATTAAATTATTATCTAATAAAA
*
10163 TATATATAATAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGCTAT-ATTAA
827 TATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGCTATAATTAA
10227 TTTAATTAAATAATTTTAAT
892 TTTAATTAAATAATTTTAAT
10247 TA
1 TA
10249 TCAATTAATT
Statistics
Matches: 845, Mismatches: 33, Indels: 66
0.90 0.03 0.07
Matches are distributed among these distances:
907 143 0.17
908 1 0.00
910 3 0.00
911 27 0.03
912 60 0.07
913 2 0.00
914 6 0.01
917 1 0.00
918 2 0.00
920 3 0.00
922 1 0.00
923 1 0.00
924 81 0.10
925 1 0.00
926 93 0.11
927 134 0.16
928 105 0.12
929 140 0.17
930 2 0.00
931 3 0.00
932 3 0.00
933 4 0.00
934 3 0.00
936 3 0.00
937 7 0.01
938 16 0.02
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (911 bp):
TAAAACAATTGATTTTAAACTTATAAGCTTATTTGAAACAAAATAATACTAAATATTTAATACTT
AAGAATTAGTAAAAGATTTAAAAAATAAATTGATTTACACCGGTTTAAATAATTATAAACACTTC
AAATAGTTATTACTACTAATTGAACAATTAAATATTTCAAATTATTATAAATAAAAAAAGCCATA
TAGATAATAATTATGATTTAAAACATCAGACTTTGTTTCTAAACAATTCTGGGCTTAAAAACCAT
TCGCACAATTATTGCACGATTTTAATTTTTCACTGTATTTCATACTTATTTGCTTTTAGATACAT
TTTTAGGTGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGAAATT
TCAAATATTAGTATCTTATTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCAA
ATAGTTATGAATATTTGAATGCATTAACATAACCATATTTATTGTTATAAATAATTTTTAATTAG
CTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATCAATT
ATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATAAATTT
ATATGCAATCCAATAAATTTATTTATAATTAAATTAATATAAACTTAAAAATTAATATTAAATAT
TAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCATGAGATCTTATATCTACTAT
TATCTAATTTATCATAAATAAATTATTAAATTATTATCTAATAAAATATATATAACAATAATTAA
ATAAGAATATTAAATTCTTAGTTATAATCTATACAGCTATAATTAATTTAATTAAATAATTTTAA
T
Found at i:11223 original size:16 final size:17
Alignment explanation
Indices: 11202--11234 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
11192 TATTGATTTC
11202 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
11218 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
11235 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:11730 original size:181 final size:178
Alignment explanation
Indices: 11296--11775 Score: 520
Period size: 180 Copynumber: 2.7 Consensus size: 178
11286 AAATTTTAAT
* * * * *
11296 AAATAATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAG
1 AAATCATTATGATCTTTTGTTTTG-TAATAAAACAATTGTTTCAG-TCATAAAAGCTTATCCAAA
* *
11361 ATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATTAGCAAGAGTTTAAAAAAATTAATTT
64 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAA-TAACAAGAGTTTAAAAAAATTAATTT
** * * * *
11426 GTTTATTTAACAAATTTAAATAGTTATGGCTATGTGAATATTATCTATTTA
128 GTTTATCGAACAAATTCAAACAGTAATGGCCATGTGAATATTATCTATTTA
* * * * *
11477 AAATCATTATGATCTTTTGTTTTGTAATAAAACAATTATTTCATTTCATACAAGCTTATTCGAAA
1 AAATCATTATGATCTTTTGTTTTGTAATAAAACAATTGTTTCA-GTCATAAAAGCTTATCCAAAA
* * * *
11542 TAAAATAATAGTAATTTATTAATATTCCAAAAATTAATAACTAAGTGATTT-AAAAAGTTAATTT
65 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAC-AAGAG-TTTAAAAAAATTAATTT
* * * * *
11606 TTTTATCGAATC-AGTTCAAACAGTAATGTCCATTTGAATAGTTATCTATTTC
128 GTTTATCGAA-CAAATTCAAACAGTAATGGCCATGTGAATA-TTATCTATTTA
* * * * * *
11658 AAATCGTTATGACCTTTTTTGTTTTTTCATAAAATAATTGTTTCAGT-ATAAAAGCTTATGCAAA
1 AAATCATTATGA--TCTTTTGTTTTGTAATAAAACAATTGTTTCAGTCATAAAAGCTTATCCAAA
* *
11722 ATAAAATAATACTACTTTATTAATATTTCAAAAATTAATAA-GAGA-TTTAAAAAA
64 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACAAGAGTTTAAAAAA
11776 TAAATCAGCT
Statistics
Matches: 249, Mismatches: 42, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
177 3 0.01
178 5 0.02
179 5 0.02
180 110 0.44
181 99 0.40
182 1 0.00
183 26 0.10
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (178 bp):
AAATCATTATGATCTTTTGTTTTGTAATAAAACAATTGTTTCAGTCATAAAAGCTTATCCAAAAT
AAAATAATACTAATTTATTAATATTTCAAAAATTAATAACAAGAGTTTAAAAAAATTAATTTGTT
TATCGAACAAATTCAAACAGTAATGGCCATGTGAATATTATCTATTTA
Found at i:12855 original size:15 final size:15
Alignment explanation
Indices: 12830--12865 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
12820 ATGCAGTTAT
12830 AATAA-TTTAATTAA
1 AATAATTTTAATTAA
12844 AATAATTTTAATTAA
1 AATAATTTTAATTAA
*
12859 AACAATT
1 AATAATT
12866 GATTTTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAATTTTAATTAA
Found at i:13466 original size:17 final size:18
Alignment explanation
Indices: 13435--13476 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
13425 CACAATTATT
*
13435 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
13453 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
13470 AACTATT
1 AATTATT
13477 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:13569 original size:19 final size:18
Alignment explanation
Indices: 13547--13584 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13537 TTCATAATTA
13547 ATAAATAATTAAAATTAAT
1 ATAAATAA-TAAAATTAAT
*
13566 ATAAATCATAAAATTAAT
1 ATAAATAATAAAATTAAT
13584 A
1 A
13585 ATTATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAAATAATAAAATTAAT
Found at i:15440 original size:17 final size:16
Alignment explanation
Indices: 15400--15449 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
15390 ATCTATACAG
15400 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
15415 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
15429 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
15447 TTA
1 TTA
15450 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:16826 original size:22 final size:22
Alignment explanation
Indices: 16788--16829 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
16778 GAATGTTAAT
*
16788 AATTAAAAGTTTTAAATATTTA
1 AATTAAAAGTTTAAAATATTTA
16810 AATTAAAA-TATTAAAATATT
1 AATTAAAAGT-TTAAAATATT
16830 ATTAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATTAAAAGTTTAAAATATTTA
Found at i:18182 original size:26 final size:26
Alignment explanation
Indices: 18153--18205 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18143 CCGATCCCAT
18153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18179 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18205 C
1 C
18206 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18501 original size:26 final size:26
Alignment explanation
Indices: 18472--18523 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18462 CCGGTCTGAT
18472 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
18498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18524 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19415 original size:26 final size:26
Alignment explanation
Indices: 19365--19417 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19355 CCGGTCCGAT
* *
19365 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTAGGAATGAAACTCGTATG
19391 CTTAGACTAGGAATG-AACTCGGTATG
1 CTTAGACTAGGAATGAAACTC-GTATG
19417 C
1 C
19418 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAACTCGTATG
Found at i:20315 original size:26 final size:26
Alignment explanation
Indices: 20264--20316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20254 CCAGTCCGAT
**
20264 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20290 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20316 C
1 C
20317 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20443 original size:898 final size:893
Alignment explanation
Indices: 18286--20496 Score: 3028
Period size: 893 Copynumber: 2.5 Consensus size: 893
18276 TCAGTCGGGT
* * * **
18286 CAAGTACCAGCACCCATCACACATCGTGTGCGCACACCTCCCCCGG-CCCCCTGATCACCGGAAC
1 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGACCCCCAGATCGTCGGAAC
* * * *
18350 CCCAATGCCGTCGGTCAAGTTCTCCGACAATGCTCCGGCGAT-GTGCCCCGACGAAGAAAAATGG
65 CCCAATGCCGTCGATCAGGTTCTCCGACTATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
* *
18414 AGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGAC
130 AGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* *
18479 TAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAAC
195 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT-GCTAAGTCAACCCACGAAAC
* * * * *** *
18544 GAGT-GTGCGGGCGCTCAATCAGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTTGGGTGCC
259 GA-TCGTGCGGGCGCTCAACCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGACCGGGTCCC
* * * * ** *
18608 CCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCTGAAATTAGACTTGGAATGA
323 CCTCTACGTGCTG-CGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* * *
18673 ACTCCGTATGCCTAAGCCAACCAATGAAAC-AAGCGGGCGGGCGGGCATTACGTCGGCCAGAGAG
387 ACTCCGTATGCCTAAGCCAACCAATGAAACGAAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAG
* * * * *
18737 ACGGGATGCGCAAGTCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
452 ACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTA
18802 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
517 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* **
18867 TTCATGGCAAAACAACACGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTT
582 TTCATGGCAAAACAACACGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGAGATTT
* ** *
18932 TTAAAATTTTTTTGGAAGGAGTTTTTTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
647 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTG
* * *
18997 GCATGCATAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAATATT
712 GCATGCACAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGT
* *
19062 GTCCCCATTTTAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
777 GTCCCCATTTCAAACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
** *
19127 GGGGGTATGAGTTCTCCAAGTTTGATGAGGCATAGGGGGATAATATAAGGGC
842 GGGGGTATGAGCACTCCAAGTTTGATGAGGCATAGGGGGACAATATAAGGGC
* * *
19179 CAGGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GACCCCTCAGATCGTCGAAAA
1 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCC-CAGATCGTCGGAAC
* * ** *
19242 CCTAATGCCGTC-AGTCAGGTTCTCCG-GTGATGCTCCGATGATGGTGCCCCAACGAAGAAAAAT
65 CCCAATGCCGTCGA-TCAGGTTCTCCGACT-ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
** * *
19305 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAG
128 GCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * *
19370 ACTGGGAATGAAAT-TCGTATGCTTAGACTAGGAATGAACTCGGTATGCCTAAGTCAACCCA-GA
193 ACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACG-
* * * * * *
19433 AAATGAACGTGCGGGCGCTCAACCGGCCAAAGGGGATGGATGCGCAAGCCAGGGATCGACCGAGT
255 AAACGATCGTGCGGGCGCTCAACCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGACCGGGT
* * *
19498 CCCCCTCTACATGCTATCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAA
320 CCCCCTCTACGTGCT-GCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAA
* * *
19563 TGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCACTACGCCGGCC
384 TGAACTCCGTATGCCTAAGCCAACCAATGAAACGA--AG-CGGGCGGGCGGGCACTACGCCGGCC
19628 AAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATA
446 AAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATA
19693 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
511 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * * *
19758 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGGTTTTCAAAACTTTTTGCGGTTCG
576 TGAAGTTTCATGGCAAAACAACACGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCG
**
19823 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATT
641 AGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATT
* * ** *
19888 TTT-TTGGCATGCACAAAAAATTTCAGC-AAAAGACTCGAAGTGTATGAGATTTTGTGACCATTT
705 TTTGTTGGCATGCACAAAAAA-ATCAGCTAAAA-ACTCAAAGTGTACAAGATTTTCTGACCATTT
* * *
19951 GAAAAAAGTGTTCCCATTTCAAACATTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAAT
768 GAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAAT
* * * * * * *
20016 GCTCTTTACGGGGGTGTGAGCACTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGC
833 GCTCTTTAAGGGGGTATGAGCACTCCAAGTTTGATGAGGCATAGGGGGACAATATAAGGGC
* *
20077 CAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGACCCCCCGATCGTCGGAACC
1 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCAGATCGTCGGAACC
* * * *
20142 CCAATGCCGCCGATCAGGTTCTCCGACTATGCTCCGGCAATGGTGCCCCGATGAAAAAAAATGCA
66 CCAATGCCGTCGATCAGGTTCTCCGACTATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA
* * * *
20207 GCACCAACACATGGTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACT
131 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
*
20272 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACG
196 GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC-TAAGTCAACCCACGAAACG
* * * * * *
20337 ATCGTGCTGGTGCTCAACCGGCCAGATGGGCGGGATGCGCATGTCGGGGATCGACCGGGTCCCCC
260 ATCGTGCGGGCGCTCAACCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* * * *
20402 TCTATGTG-TGGCTGATCCTGCTGCCACAACCCTC-GTCTGGTCCGATCTTAGACTGGGAATGAA
325 TCTACGTGCT-GC-GATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
* *
20465 CTCCGTATGCCTGAGCCAACCTATGAAACGAA
388 CTCCGTATGCCTAAGCCAACCAATGAAACGAA
20497 TAAGCGGGC
Statistics
Matches: 1143, Mismatches: 150, Indels: 47
0.85 0.11 0.04
Matches are distributed among these distances:
890 1 0.00
891 9 0.01
892 45 0.04
893 299 0.26
894 1 0.00
896 1 0.00
897 226 0.20
898 292 0.26
899 259 0.23
900 10 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (893 bp):
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCAGATCGTCGGAACC
CCAATGCCGTCGATCAGGTTCTCCGACTATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA
GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTAAGTCAACCCACGAAACGA
TCGTGCGGGCGCTCAACCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
CTACGTGCTGCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCAATGAAACGAAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGG
GATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTACATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAAACAACACGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGAGATTTTTAA
AATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCC
CCATTTCAAACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTATGAGCACTCCAAGTTTGATGAGGCATAGGGGGACAATATAAGGGC
Done.