Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168444.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_656, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20470
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:18072 original size:22 final size:23
Alignment explanation
Indices: 18046--18107 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
18036 TTTAATTTTA
*
18046 AATTTTAAATTAAT-TAGATATT
1 AATTTTAAATTAATATAGATATC
* *
18068 AATTTTAAATTTATATATATATC
1 AATTTTAAATTAATATAGATATC
18091 AATTTATTAAATTAATA
1 AA-TT-TTAAATTAATA
18108 CTATATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 13 0.39
23 8 0.24
24 2 0.06
25 10 0.30
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
AATTTTAAATTAATATAGATATC
Found at i:20315 original size:2 final size:2
Alignment explanation
Indices: 20310--20362 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
20300 GAAAAAATCC
20310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20352 AT AT AT AT AT A
1 AT AT AT AT AT A
20363 CATACACACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.