Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168445.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20469
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Found at i:1263 original size:25 final size:26
Alignment explanation
Indices: 1224--1275 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1214 CTGGTCCGAT
1224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1250 CTTAGA-TTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1275 C
1 C
1276 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2164 original size:26 final size:26
Alignment explanation
Indices: 2124--2176 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2114 TCGGTCTGAT
*
2124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
2150 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
2176 C
1 C
2177 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:2458 original size:902 final size:901
Alignment explanation
Indices: 1--5712 Score: 7255
Period size: 892 Copynumber: 6.4 Consensus size: 901
* * * *
1 GCTAAAAACTCAAAGTTTACAAGATTTTGTGACGATTTGAAAAAAATGTCCCCATTTCAGACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGA
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
131 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA--TGT
131 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
** * *
193 GCGTACATCCCCCGGCCCCCCGATCGTC-GAAACCCAATGCCGCCGGTCAGGTTCT-C--C-A-G
196 GCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * *
252 ---C-A--ATGGTGCCCAAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTAC
261 CTCCGACGATGGTGCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
311 TGCCACAACCCTCGATCTGATCTGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
325 TGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * *
376 TGAACTCCGTATGCCTAAGTCAACCCACGAGACGAGCGTGCGAGTGTTCAACCGGCCATA-GGGC
390 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * ** * * * * * * *
440 -GGATGAGCAAGCTGGGGATCGGTCGGGTCTCTCTTTACGTGCTACTAATCCTACTGCTGCAACC
455 GGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAACC
* * *
504 C-C-GTCCAGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCTACCGACGAAA-GTA
520 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A
* * * * *
566 GC-GGCGGGCGAGCGGGTGGGCACTACGTCGGCCAGAAAGATGGGATGGCACAAGCTGTGGATCG
584 GCGGGCGGGCG-GC--GCGGGCACTACGCCGGCCAGAGAGACGGGAT-GCACAAGCCGTGGATCG
* *
630 ATAGGGTGGTAGGTGGGTTTA-GCACAACTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCT
645 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* * *
693 TCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT-TTGTTT
710 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT-TTT
** * *
757 CTATTTTTCATGATTTACGAAACTTTTGT--GGTTC-AGGATTTTTTTAAAATTTTTTTGAAAGG
774 CTATTTTTCATGATTTTTGAAACTTTT-TACGGTTCGA-GATTTTTTAAAAATTTTTTCGAAAGG
* *
819 A-TTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTT-GCATGCACAAAAAACTTCA
837 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
882 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTGAAACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
947 TTAGTGGCTACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGA
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
1011 GGTTCGATGAGGGATA-GGGGACAATATAAGGGCCAAGTACCAGCACCCA-C-AACATCA--TGT
131 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
* * * * *
1071 GCGCACACCCCCTGG-CCCCCGATCGCCGG-ACCCCCATGCCGTCGGTCAGGTTCTCC-AGCGAT
196 GCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGAT
* * * *
1133 GCTCTGACGATGGTGCTCCAATGAAG-AAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTG
260 GCTCCGACGATGGTGC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
1197 CTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGA
324 CTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
1261 ATGAACTCCGTATGCCTAAGTCAACGCACAAAACTAGTGTGCAGGCGCTCAGTCGGCCAGAGGGG
389 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
1326 CGGGATGCGCAAGCCGAGGATC-AGCTGGGTCCCCCT-TGCATGCTGCCAATCTTGCTACTGCAA
454 CGGGATGCGCAAGCCGAGGATCGA-CCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAA
* *
1389 CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
518 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
1454 A-CTGGGTGGGCGGGCGAGCGGGCACTATGCCGGCCAGAGAGACGGGATGCACAAGCCATGGATC
583 AGC-GGGCGGGC-GGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATC
* * ** *
1518 GACATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGGCAATGCCATTTTTATGGC
644 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
*
1583 TTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTT
709 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
1647 CTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAAATTTTTTCGAAAGAA
774 CTATTTTTCATGATTTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGAAAGGA
* * * * *
1711 GTTTTGGACCCAAACTTGGTAGACATCATCCTTGTA-TTTTTTTGGCATCCACAAAACAATTCA
838 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
1774 GCTAAAAACTCGAAGTGTACAAGA-TTTGTTACCATTTGAAAAAAGTGTCCCCATTTCA-ACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
** * *
1837 TTAATGGCTTGTTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTCAGGGGGTGTGAGTTCTCG
66 TTAATGGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
1902 AGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
130 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
1967 TGCACACACGCCCCCAG-CCCCCTATCATCGGAACCCCAATGCCGTCGGGCAGGTTCTCCGGCAA
195 TGCACACAC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * *
2031 TGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCAGCACCACCACATGTCCGAGCCCAGCATGT
259 TGCTCCGACGATGGTGCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
2096 GCTGTCGCAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
323 GCTGTCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
2160 CAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
387 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * *
2225 GGCGGGATGCGTAAGCCGAGGATCGACCGGGTCCCCCTCTATGTGCTACCAATCCTACTGCTACA
452 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACA
* *
2290 ACCCTCGGTCTGGTCTGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
517 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * * *
2355 GAGCGGGTGGGCAGGCAGACGGGCACTACGTCGGCCAGGGAGACAGGATGCGCATGCCGTGTATC
582 GAGCGGGCGGGC-GGC-G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATC
* * * * *
2420 GATAGGGTGGTAGGTGGGTTTAAGCACATGTTCATATTTTTTCATGCCGATGCCATTTTTATGGC
644 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
2485 TTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACCACTCATTTT
709 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
2550 CTA-TTTTCATGATTTTTGAAACTTTTTGCAGTTGGGGATTTTTTAAAATTTTTTTGGAAA-GA-
774 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGAAAGGAG
* ** *
2612 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTCACAAGCACAAAAAAATTCA
839 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
2675 GCTAAAAAATCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
2740 TTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGA
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* ** * * *
2805 GGTTTGATGAGGGATAGGGAGCCAATATAAGGGAAAAGTACAAGCACCTATCGCACATCATGTGC
131 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
* * * *
2870 GCACAC-CCCACCCGGCCCCCCGATCATCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGAT
196 GCACACACCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * ***
2934 GCTCCGACGATGGTGCCCCGGA-GAAGAAAAATGCGACACCAGCACATGCCTGAGTGTAGCAT-T
260 GCTCCGACGATGGTG-CCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
**
2997 CGCTACCGCAACCCTCGGTCT-G---G-TC-----C---------A------AT-CTTAGACTGG
323 -GCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * **
3036 GAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCAGAGG
387 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** * * * *
3101 GGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCTCTCTACGTGCTGTCGATCCTGCTGCTGCA
452 GGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACA
* ** * * *
3166 ACCCTCAGTTTGGT-TCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAA
517 ACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
3230 CGAGCGGGCGGGCGG-GCGGGCTCTACGCCGGCCAGAGAGGCGAGATGCACAAGCTGTGGACCGA
581 CGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGA
*
3294 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
646 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* *
3359 GTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCT
711 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
3424 ATTTTTCAAGATTTTTGAAGCTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAAGGGGTT
776 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGAAAGGAGTT
* * * *
3488 TTGGCCCAAAAATTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTTA
841 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * * * *
3548 GCTAAAAACACAAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTCCAAACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
3613 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-A
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
3677 CGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
131 -GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
3742 CGCACAC-CCCCCCGGCCCCCCCGATCGCCGAAACCCTAATGCCGCTGGTCAGGTTCTCCGACGA
195 TGCACACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * *
3806 TGCTCCGACGATGGTGCCCTGGCGAAGAAAAAT-CTGGCACTAGCACATGCCTGAGCCCAGCATG
259 TGCTCCGACGATGGTGCCC-GACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATG
*
3870 TGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
322 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
3935 GAATGAACTTCGTATGCCAAAGTAAACCCACGAATCGAGCTTGTGGGCGCTCAGCCGGCCAGAGG
387 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * * *
4000 GGCGGGATGCGCAAGCTGGGGGTC-ACGCAGGTCCCCCTCTACATGCTGTCGATCCTGCTACCAC
452 GGCGGGATGCGCAAGCCGAGGATCGAC-CGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTAC
* * *
4064 AACCCTCAGTCCGGTCTGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
516 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
4129 CGA----ACGGGCGG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGA
581 CGAGCGGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGA
* ***
4189 TAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGGTTGCCAATGCCATTTTTATGGCTT
646 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* *
4254 GTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCT
711 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
4319 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAAA-TTTTTC-AGATGAAGT
776 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGA-AAGGAGT
4381 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAAAATTCA
840 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCA
* *
4443 GCTAAAAACTAGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
4508 TT--T-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GA
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-
*
4569 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTG
130 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
4634 CGCACAC-CCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCTGACGA
195 TGCACACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
*
4698 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
259 TGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
4763 GCTGTCGCAATCATCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
323 GCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * * *
4828 AATGAACTCTGTATGCTTAAGCCAACCAACGGAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGG
388 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * ** *
4893 GTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAA
453 GCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAA
* * * * *
4958 CTCTTGATCCGGTC-CACTCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
518 CCCTCGGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * *
5022 GAGCGGGCAGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTAGATC
582 GAGCGGGCGGGC-GGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATC
*
5087 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
644 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* *
5152 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTT
709 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** *
5217 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGAAAGGAG
774 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGAAAGGAG
* *
5281 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTTTTTTTGGCATGCACAAAACAATTCA
839 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
5344 GCTAAAAATTGGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
1 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
5409 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGA
66 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
** *
5474 GGTTTGATGAGGGATAGGGGGTGAATA-AAGGGCCAAGTAACAGCACCCATCGCACATCA--TGT
131 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
* * * * *
5536 GCGCACA-------GCCCCCCTGATTGTCGGAACCCCAATGCAGCCTGTCAGGTTCTCCGATGAT
196 GCACACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* ** ** * * *
5594 GCTTCGGTGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAACATGTG
260 GCTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
5659 CTGCCGCAACCCTCGGTCTGGTCTTATCTTAGGCTGGGAATGAACTCCATATGC
324 CTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
5713 CTAAGTCAAC
Statistics
Matches: 4217, Mismatches: 490, Indels: 234
0.85 0.10 0.05
Matches are distributed among these distances:
872 181 0.04
873 343 0.08
874 46 0.01
875 3 0.00
876 189 0.04
877 36 0.01
878 25 0.01
880 83 0.02
881 84 0.02
882 1 0.00
883 2 0.00
886 54 0.01
887 116 0.03
888 37 0.01
889 97 0.02
890 108 0.03
891 140 0.03
892 573 0.14
893 44 0.01
894 62 0.01
895 427 0.10
896 4 0.00
897 14 0.00
898 21 0.00
899 225 0.05
900 326 0.08
901 287 0.07
902 533 0.13
903 74 0.02
904 81 0.02
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT
GCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAACCC
TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGGCGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGAAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
Found at i:3935 original size:26 final size:26
Alignment explanation
Indices: 3899--3951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3889 CTGGTCTGAT
3899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3925 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3951 C
1 C
3952 CAAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4820 original size:26 final size:26
Alignment explanation
Indices: 4791--4846 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
4781 CTGGTCCGAT
4791 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4817 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4843 CTTA
1 CTTA
4847 AGCCAACCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:6202 original size:26 final size:26
Alignment explanation
Indices: 6173--6225 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6163 CTGGTCCGAT
*
6173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
6199 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
6225 C
1 C
6226 CTAAGTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:7985 original size:26 final size:26
Alignment explanation
Indices: 7947--7999 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
7937 CTGGTCCGAT
*
7947 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
7973 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
7999 C
1 C
8000 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:8881 original size:26 final size:26
Alignment explanation
Indices: 8852--8904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8842 CGGGTCCAAT
8852 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
8878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
8904 C
1 C
8905 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:8984 original size:33 final size:33
Alignment explanation
Indices: 8942--9015 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
8932 GGGCGCTCAG
*
8942 TCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGA
1 TCGGCCAGAGGGGCAGGATGCATAAGCCGGGGA
8975 TCGGCCAGAGGGGCAGGATGCATAAGCCGGGGA
1 TCGGCCAGAGGGGCAGGATGCATAAGCCGGGGA
9008 TCGGCCAG
1 TCGGCCAG
9016 GTCCCCTTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.22, C:0.23, G:0.46, T:0.09
Consensus pattern (33 bp):
TCGGCCAGAGGGGCAGGATGCATAAGCCGGGGA
Found at i:9837 original size:26 final size:26
Alignment explanation
Indices: 9786--9838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
9776 TCGGTCCGAT
* * *
9786 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
9812 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
9838 C
1 C
9839 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:10720 original size:26 final size:26
Alignment explanation
Indices: 10684--10736 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10674 CCAGTCCGAT
*
10684 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10710 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10736 C
1 C
10737 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11594 original size:26 final size:26
Alignment explanation
Indices: 11565--11617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11555 CCGGTTCGAT
11565 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
11591 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
11617 C
1 C
11618 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:12487 original size:26 final size:26
Alignment explanation
Indices: 12458--12510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12448 CCGGTCCGAT
*
12458 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12484 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12510 C
1 C
12511 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13245 original size:902 final size:900
Alignment explanation
Indices: 5936--17827 Score: 14722
Period size: 902 Copynumber: 13.3 Consensus size: 900
5926 GAGACAGGCA
*
5936 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * * * *
6001 ATCGTACATAATGTGCGCACACCCCCCTGACCCCCCCGATTGCTGGAACCCTAATACCGTCAGTC
66 ATCGCACATCATGTGCGCACACCCCCC-G-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * *
6066 AGGTTCTCCAGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCC
129 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
6131 CGAGCCCAGCATGTGCTGCTGTAACCCACGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
193 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
6196 ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTTAATCCATGAAACAAGCGTACGGGCGCTC
258 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
6261 AGCTGGCCAGAGGGGAGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCT-ATCG
323 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-G
* * * * *
6325 ATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
387 ATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * *
6390 CCAACTGATAAAATGAACGGGCTGGC--G-GGCAGGCACTACGCCGACTAGAGAGACGGGATGCG
452 CCAACCGACGAAACGAACGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * * * *
6452 TAAGCCTTGTATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATCTTTCT--ATGTAACAA
517 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAA
* *
6515 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGAC
580 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** * *
6580 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTATGGTT-GAGGATTTTTTAAAA
645 AAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAA
* * * ** *
6644 TTTTTTTGGAATGAGTTTTGGTCCTGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGC
709 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
6709 AAAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTC
774 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
6774 CATTTCAGGCATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-G
839 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
6835 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * ** * * *
6900 ATCTCACATCACGTGCG--GACCCCCC-GCCCCATTCGATCACTAGAACCCTAATGTCGTCGGTT
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCC--CCGATCGCCGGAACCCCAATGCCGTCGGTC
* * * ** * * * *
6962 AGGTTCTCCAGCAATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATACGACACCAGAACAAGCC
129 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCC
*
7027 CGAGCCCAGCATGTGCTACCGCAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-
193 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
7067 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGGCGTT
258 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCT
* * * * * *
7131 CAGCCTGCCAGAGAGGTGAGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGCGTCGTAA
322 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT--GCGT-G---
* * * * *
7196 CCCTCGGTCCGGTCCTG-TCGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGGACTC
381 --CT--G-CTGATCCTGCT-GCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* ** * * * * * * *
7260 TGTATGTGTAAGCCAACTGATG--A--AACGTGCGGGC---AGGCGAGCACTACGTCGACCAGAG
440 CGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAG
* * *
7318 AGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTACGCTCATCTTCATATTTC
505 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
7383 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAGTGGTCCCTTGAGCCTTCACGTGAA
570 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
** *
7448 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
635 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGAT
* * * *** * *
7513 TTTTTACAATTTTTTTGAAAGGAGTTTTGGCCTTGAA-TTGGTAGGCGTGATCCTTGTATTTTTT
700 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
7577 TTGGCATGCATAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
765 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
7642 AAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCT
830 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
7707 TCAAGG
895 TTAAGG
* * *
7713 GGGTGTGAGTTCTTGAGGTCTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCG
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
7777 ATCACACATCATGTGCGCACACCCCCCCGGCTCCTCGATCGCCGAAACCCCAATGTCGTCGGTCG
66 ATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* *
7842 GGTTCT-CGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
7906 GTGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATA
194 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
7971 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGTGCTCA
259 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * **
8036 GTCGGCCAGAGGGGCGGGATGCGCAGGTCGGGGATCGGCCGGGTCCTCCTCTACATGCTGCCAAT
324 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGAT
* * * ** * * * *
8101 CCTACAGCCACAACCCTTGGTCTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
389 CCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * * * * *
8166 AACCAACGAAACGAGCGTACGGGCGGTCGGGCGGGCACTACGTCAGCCAAAGAGACGGGATGCAC
454 AACCGACGAAACGAACGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
8231 AAGCCATGGAACGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGC
518 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
8296 CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTGATGGCAAG
583 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
8361 ACGACTCATTTTCTATTTTTCATGATTTTCAAAACATTTTGCGGTTCGGGATTTTTTAAAATTTT
648 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
8426 TTCGAAAGGAGTTTTGGACCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
713 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
8491 AGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCTCCATT
778 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
8556 TCAGACACATTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
843 TCAGACAC--TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
8616 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
8681 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTTA
66 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* *
8746 GGTTCTCCGGTGATGCTCCGACGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * * *
8811 -AGGCCCAGCATGTGCTGTCGCAACCTTCCGTCGGGTCCAATCTTAGACTGGGAATGAACTCCAT
194 GA-GCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
8875 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAATGAGCGTGCGGGCGCTC
258 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * *
8940 AGTCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCCAGAGGGGCAGGATGCATAAGCCGG
323 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT------------C-----G----A-CC-G
* * * * * ** * *
9005 GGATCGGCCAGGTCCCCTTCTACGTGCTACTGATCGTGCTGCCACAATCCTTTGTCTGGTCCAAT
365 GG-T----C----CCCC-TCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGAT
* * * *
9070 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGGTCGGGC-GGCGGA
420 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCGG-
* * * * **
9134 CGGGCACTACGTCGGCTAGAG-GACGGGATTCGCAAGCCGTGGATCAATAGGGTGGTACATGGGT
484 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
9198 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCATGTAAACTCATACAATGG
549 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * * *
9263 GCCCTTAAGCCTTCACGTGAAGTTTCATAGTAAGATGACTCGTTTTCTATTTTTCAAGATTTTTA
614 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCA
* *
9328 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGCA
679 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
9393 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAACTCGATGTGTACAA
744 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
9458 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
809 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
9523 CTGTAAAATCTCAAATGCTCTTTAAAG
874 CTGTAAAATCTCAAATGCTCTTTAAGG
* * *
9550 GGGTGTGAGTTATCGAGGTTTGATGGGGGATAGGGGGCCAATATAA-GGCCAAATACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * **
9614 ATCGTACATCATGTGTGCACACCCCCCCGACTCCCCCGATCGCCGAAACCCCAATGCCACCGGTC
66 ATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * * *
9679 AGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACAAGCACATCCC
129 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCC
* ** * *
9744 CGAGCCCAGCATGTGCTACCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGT
193 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * ** *
9809 ATGCTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAAAGCGTGCGTGCGCTC
258 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
9874 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGTGTGCTGCCGA
323 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGA
* * * * ** *
9939 TCTTACTGCTGCAACCCTCAGTCTGGTCTAATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGC
388 TCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
10004 CAACAGACGAAACGAGCGGGC-GG-GGG-GGCGGGCACTGCGCCAGCTAGAGAGACGGGATGCGC
453 CAACCGACGAAACGAACGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
10066 AAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
518 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
10131 CATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
583 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * ** *
10196 ATGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTT
648 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
10261 TTCGAAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
713 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
10326 AAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
778 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
10391 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAG
843 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
10449 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCA
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
10514 ATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-ACGGAACCCCAATGCCGTCGGTCA
66 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
** **
10578 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATAAAGAAAAATATGGCACCAGCACATGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
10643 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTA
194 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* ** *
10708 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCATGCACTCA
259 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
10773 GTCGGCCAGAGTGGCGGGATGCGCAAGCCGAGGATTG-CCTGGGTCCCCCTCTAG-GTGCTGCTG
324 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGGTCCCCCTCT-GCGTGCTGCTG
* * * * *
10836 ATCTTGCTCCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
387 ATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
10901 CCAATCGACGAAACG-A---GCAGGC--G-GGCGGGCACTATGCCAGCAAGAGAGACGGGATGCG
452 CCAACCGACGAAACGAACGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
10959 CAAGCCGTGGATCG-TAAGGGTGGTAGGTGGCTTTAGGCACGTCTTCATATTTATGCATGCCAAT
517 CAAGCCGTGGATCGAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
11023 GCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
581 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * * *
11088 TGACGACTCATTTTCTATTTTTCATAATTTTCAAACCTTTTTCCGTTTCGAGATTTTTTAAAATT
646 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
** * * *
11153 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATATGATCCTTGAATTTTTGTCGGCCTGCAC
711 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * *
11218 AAAAACATTCAGCTAAAAACTTGAAGCGTACAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCA
776 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
11283 TTCCAGACACTTTAATGGCTACTTGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGG
841 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
** * * * *
11343 GGGCATGTGTTCTCGAGGTTTAATGAGGGATAGGGGGCCGATATAAAGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
11408 ATTGCACATCATGTACGCACACCCCCCGGCCCCCCAGATCGCCGAAACCCAAATGCCGTCGGTCA
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCA
*
11473 GGTTCTCCAGCGATGCT-C--C------G----GCGAAGAAAAATGCGGCACCAGCACATGCCCG
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
11525 AGCCCAGCATGTGCTGCTGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATAAACTCCGTAT
195 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
11590 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGTGCTCAG
260 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
11655 CCGGCCAGAAGGGCGAGATGCACAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGCCAATC
325 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * * *
11720 CTACTACCACAACCCTC-GATCCTGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
390 CTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
11784 AATCGACGAAAC-AA---GCGGGCGGGCGGTC--G--CTACGCCGGCCAGAGAGACGGGATGCGT
454 AACCGACGAAACGAACGGGCGGGCGGGCGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
11841 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGC
518 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* ** *
11906 CATTTTTATGGATTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-ATTGGTAA
583 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAA
* ** *
11970 GATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTT
647 GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * *
12035 TTT-TGAAGGAGTTTTGACCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
712 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
12099 AAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
777 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
12164 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGA
842 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
12223 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* ** *
12288 ATCGCACATCATGTGCGCACACTCCCCCGGCCCCCCGATCGTCAAAACTCCAATGCCG-CGGTCA
66 ATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
** * ** * * *
12352 GGTTCTCTAGCGATGCTCTGGTGATAGTGCCCCAGCAAAGAAAAATGCAGCACCAGCACATGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCC
* * *
12417 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTA
194 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
12482 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
259 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
12547 GACGGCCAGAGTGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGTTGCTAAT
324 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGAT
* * * *
12612 CTTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAAGTCTGTATGCCTAAGCC
389 CCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
12677 AACCGACGAAATGAACGGGCGGGCGGGCAGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGC
454 AACCGACGAAACGAACGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
12742 AAGCCGTGGACCGGTAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTTTGCATGCCAATGC
518 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
12807 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
583 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** *
12872 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAATATTTT
648 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
12937 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
713 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
13002 AAAAATTCAGCTAAAAACTCGTAGTGCACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATT
778 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13067 TC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGG
843 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
13125 GGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
13190 ATCGCACATCATGTGCGCACACCCCCTGGCCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCA
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCA
* * * *
13255 GG-T-T----C--T-CT-AG-CGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACAAGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCC-CCGCGAAGAAAAATGCGGCACCAGCACATGCCC
* * * **
13309 GACCCCAGCATGTTCTGCCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTA
194 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
13374 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAACGTGTC-AGCGATC
259 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTC
*** * * *** *
13438 AGCTTACCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCT-ATCG
323 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-G
** * * * * *
13502 ATGTTGCTGCTGCAACCCTCAGCCCAGTCCGATCTTAGACTGGGAATGAACTACATATGCCTAAG
387 ATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
13567 CCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGC
452 CCAACCGACGAAACGAACGGGCGGGCGGG-CGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
13632 GCAAGCCGTGAATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
516 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
13697 GCCATTTTTACGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
581 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * *
13762 AGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTTG-GATTTTTTAAAAT
646 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TTCGAGATTTTTTAAAAT
* * *
13826 TATTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTCGGCATGCA
710 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
13890 CAAAAAATTTC-GTCTAAAAA-TGCGAAGTGTACAAGATTTTGTGATCATTTG-AAAAAGTGTCC
775 CAAAAAAATTCAG-CTAAAAACT-CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
13952 CCATTTCAGACACTTTCATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
838 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
14015 GGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCG
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * **
14080 ATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCATCGGAACCCCAATGCCGCCCATC
66 ATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTC
** * * * * * *
14145 AGGTTCTTTGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGACAGCAGCACATTCT
129 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCC
* * *
14210 CGAGCCAAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATTAACTCCGT
193 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
14275 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAGGAGCGTGCGGGCACTC
258 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * ** * * * * **
14340 AGCCGGCTAGAGGGGCAAGACGCATAAACCGGGGATCAACCGGTTCCCCCTCTGCATGCTATTGA
323 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGA
* * ** * * *
14405 TCCTACTACCGCAACCCTCAGTCTAGTCCCATCTTAGACTGGGAATGAACTCCCTATGCCCAAGC
388 TCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
14470 CAACCGACGAAACGAGA-GCGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGC
453 CAACCGACGAAACGA-ACGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
14534 GCAAGCCGTGGGTCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
516 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
14599 GCCATTTTTATGGCTTATAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
581 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
14664 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAGTTTTTACGGTTTTGA-ATTTCTTAAAAT
646 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG-TTCGAGATTTTTTAAAAT
* * * *
14728 TATTTCGGAATGAGTTTTTGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
710 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
14793 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCC
775 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCC
*
14858 CATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
839 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
14920 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
14985 ATCGTACATCATGTGCGCACAACCCCCCGGCCCCCCGATCGCCGGAACCACAATGTCGTCAGTCA
66 ATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * * * *
15050 GGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGAC-AAGGAAAAATGCGGCACCATCGCATGGC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAA-GAAAAATGCGGCACCAGCACATGCC
* * * *
15114 CGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGT
193 CGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * **
15179 ATGCTTAGATTGGGATTGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGTTGGCGCTC
258 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
15244 AGCCGGCCAGAGAGGCGAGATGCGTAAGCCGGGGATCTACCGGGTCCCCCTCTACGTGCTG-TCG
323 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCT-G
* * * * *
15308 ATCCTGCTGTCGCAACCCTC-GATCCAGTCTGATCTTATACTGGGAATGAACTCCATATGCCTAA
387 ATCCTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * **
15372 GCCAACTGACGAAACGAGCGGGCGGGCGGGTAGGCGAGCACTACATCGGCCAGAGAGACGGGATG
451 GCCAACCGACGAAACGAACGGGCGGGCGGG-CGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
**
15437 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGTTGCCAA
515 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
15502 TGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
580 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** *
15567 AAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
645 AAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAT
15632 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCA
710 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
15696 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
775 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* **
15761 ATTTCAGACGCTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
840 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
15822 GGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * * **
15887 ATCACACATCATGTGCGCACA-CCCCCGCCCCCCCGATCGCTGGAATCCTAATGCCATCAATCAG
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * *
15951 GTTCTCCGGTGATGCTCCAACGATGGTGCCCCAGTGAAGAAAAATGCGACACCAGCACATGCCCG
131 GTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCG
*
16016 AGCCCAGCATGTGCTGTCGCAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-AT
195 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * **
16056 -CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGTGGGCATTCAG
260 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
16120 CCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
325 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATC
* * ** * * * * *
16185 CTGCTACCACAACAATCAGTCTGGTCTGATCCTAGAATGGAAATGAACTCCGTATGCCTAAGCCA
390 CTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * * *
16250 ACCAACAAAACGAGCAGACAGGCGGGCGGGCGGGCACTACGTCGTCTAGAGAGGCGGGAAGCGCA
455 ACCGACGAAACGAACGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * * *
16315 AGCCGTGGAACGATAGGGTGGCAGGTGGGTTTGGGTACATTTTCATATTTCTACGTGCCAATGCC
519 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
16380 ATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTG-AGTTTCATGGCAAG
584 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAG
* * * * * **
16444 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTTGGGATTTTTTTTAATTTT
648 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * ** * ** * *
16509 TTTGAAAGGCA-TTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGAAATGTATA
713 TTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
16573 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCAT
777 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
16638 TTCAGACATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAG
842 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
16697 GGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * **
16762 ATCGCACATCATGTGCGCACACCCCCAGACCCCCCTGATCGCTGGAATCCCAATGCCATCAATCA
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCA
* * *
16827 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCC
* ** * * *
16892 AAGCCCAGCA--TG-TGCCG----TTTCAATCC--T-TGGTC-----C---G---G---TCCG-A
194 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
16932 T-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCA
259 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
16996 ACCGGCCAGACGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGT--CCC-C--C-T-ATGC-G--
324 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGAT
** *
17051 --TGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
389 CCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ***
17114 AACCGACGAAACGAGCGGACGGGCGGGTGGGCGGGTGGGCTCTGCGCCGGCCAGAGAGGTAGGAT
454 AACCGACGAAACGA----ACGGGCGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * * *
17179 GTGCAAGTCATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTACGTGCCA
514 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
17244 ATGCCATTTTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
579 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
17308 CAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAA
644 CAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA
* ** * * *
17373 TTTTTGC-GAAAAACATTTTGGCTCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATG
709 TTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
17437 TATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCC
773 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
17502 CCATTTTAGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTCTAAGG
838 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
17565 GGGTGTGAGTTATCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * *
17630 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTTGGAATCCCAATGCCATCGATCA
66 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * ** * *
17695 GGTTCTCCGACGATCCTCTGACGATGGTGCCCCAATGAAGAAAAATACGACACCAGCACATGCCC
130 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCC
* * ** * * * *
17760 GAGCCCAACTTGTGCTGCTTCAATCCTCAATCCGATCCGATCTTAGATTGGGAATGAACTCCGTA
194 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
17825 TGC
259 TGC
17828 CTAAGTCAAC
Statistics
Matches: 9646, Mismatches: 1097, Indels: 505
0.86 0.10 0.04
Matches are distributed among these distances:
865 65 0.01
866 1 0.00
867 4 0.00
868 445 0.05
869 124 0.01
870 53 0.01
871 57 0.01
872 6 0.00
873 5 0.00
874 438 0.05
875 226 0.02
876 16 0.00
877 401 0.04
878 334 0.03
879 58 0.01
880 276 0.03
881 484 0.05
882 66 0.01
883 2 0.00
884 3 0.00
885 2 0.00
886 4 0.00
887 2 0.00
888 3 0.00
889 1 0.00
890 155 0.02
891 98 0.01
892 597 0.06
893 284 0.03
894 483 0.05
895 45 0.00
896 108 0.01
897 22 0.00
898 339 0.04
899 519 0.05
900 374 0.04
901 417 0.04
902 966 0.10
903 274 0.03
904 712 0.07
905 366 0.04
906 2 0.00
910 1 0.00
911 2 0.00
912 1 0.00
913 1 0.00
917 2 0.00
922 2 0.00
927 2 0.00
928 3 0.00
929 1 0.00
933 37 0.00
934 329 0.03
935 2 0.00
936 314 0.03
937 23 0.00
938 89 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAACGGGCGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
Found at i:13386 original size:26 final size:26
Alignment explanation
Indices: 13350--13402 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13340 CCAGTCTAAT
13350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13376 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13402 C
1 C
13403 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14281 original size:26 final size:26
Alignment explanation
Indices: 14252--14304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14242 CCGGTCCGAT
*
14252 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14304 C
1 C
14305 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15192 original size:26 final size:26
Alignment explanation
Indices: 15156--15208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15146 CCGGTCCGAT
*
15156 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15182 CTTAGATTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15208 C
1 C
15209 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18755 original size:12 final size:12
Alignment explanation
Indices: 18734--18775 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
18724 GACGAAACAA
*
18734 GCGGGTGAGCGG
1 GCGGGCGAGCGG
*
18746 ACGGGCGAGCGG
1 GCGGGCGAGCGG
*
18758 GCGGGCGGGCGG
1 GCGGGCGAGCGG
18770 GCGGGC
1 GCGGGC
18776 ACTACGCTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.07, C:0.24, G:0.67, T:0.02
Consensus pattern (12 bp):
GCGGGCGAGCGG
Found at i:18763 original size:4 final size:4
Alignment explanation
Indices: 18742--18775 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
18732 AAGCGGGTGA
* *
18742 GCGG ACGG GCGA GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
18776 ACTACGCTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.06, C:0.26, G:0.68, T:0.00
Consensus pattern (4 bp):
GCGG
Done.